Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 5.1e-179 630.9 316 100.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.9e-96 356.7 396 53.5
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-96 356.7 396 53.5
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.9e-96 356.7 401 54.9
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 9.2e-96 354.4 396 53.3
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-94 350.5 397 52.9
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-94 349.7 396 52.5
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 2.3e-94 349.7 396 52.5
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 7.3e-93 344.7 400 53.5
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.6e-92 343.6 397 54.2
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 8.1e-92 341.3 404 52.0
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.4e-91 339.7 397 53.1
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.4e-91 339.7 404 52.2
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 7.1e-88 328.2 402 50.5
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 3.9e-86 322.4 225 73.3
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.3e-81 307.4 230 69.6
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.2e-81 306.6 394 48.2
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 4.9e-81 305.4 230 69.1
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.7e-79 299.7 397 47.4
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 4.6e-79 298.9 355 50.4
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 6.6e-78 295.0 369 46.6
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.7e-78 294.7 342 47.7
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 5.6e-77 292.0 342 47.7
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.6e-76 290.4 357 46.2
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.1e-76 290.0 222 66.2
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 2.8e-76 289.7 342 47.7
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 3.6e-76 289.3 222 65.8
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 4.8e-76 288.9 342 48.8
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 4.8e-76 288.9 367 46.3
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 6.2e-76 288.5 366 45.6
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.1e-76 288.1 342 48.0
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 8.1e-76 288.1 342 46.8
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 1.1e-75 287.7 343 48.1
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.4e-75 287.3 344 46.5
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.4e-75 287.3 339 48.4
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.4e-75 287.3 342 47.4
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.4e-75 286.6 222 64.4
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 2.4e-75 286.6 342 47.4
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.4e-75 286.6 342 48.0
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 2.4e-75 286.6 342 47.1
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.1e-75 286.2 328 48.2
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 4.0e-75 285.8 343 47.5
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 5.3e-75 285.4 351 45.3
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 5.3e-75 285.4 340 48.8
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 6.9e-75 285.0 322 48.4
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 6.9e-75 285.0 360 46.1
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 6.9e-75 285.0 346 47.1
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 9.0e-75 284.6 309 49.8
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 9.0e-75 284.6 381 44.9
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.2e-74 284.3 349 46.4
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.2e-74 284.3 349 46.1
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.2e-74 284.3 358 46.1
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.0e-74 283.5 222 64.0
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-74 283.5 222 64.0
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 2.0e-74 283.5 337 47.8
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 2.6e-74 283.1 327 48.3
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 3.4e-74 282.7 328 47.6
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 3.4e-74 282.7 343 46.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 3.4e-74 282.7 350 46.0
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 4.5e-74 282.3 361 44.9
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.5e-74 282.3 343 46.6
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 5.8e-74 282.0 369 44.2
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 5.8e-74 282.0 327 48.9
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 5.8e-74 282.0 380 45.5
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 7.6e-74 281.6 354 46.9
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 7.6e-74 281.6 343 45.8
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 7.6e-74 281.6 342 46.5
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 9.9e-74 281.2 366 43.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.3e-73 280.8 356 44.7
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.9e-73 279.6 341 49.0
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.9e-73 279.6 343 46.4
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 3.8e-73 279.3 329 46.8
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.8e-73 279.3 343 46.1
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 3.8e-73 279.3 389 44.0
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 4.9e-73 278.9 327 47.7
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 4.9e-73 278.9 343 46.6
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 8.4e-73 278.1 328 47.6
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 8.4e-73 278.1 346 48.0
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.4e-72 277.3 389 44.2
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.9e-72 276.9 344 47.7
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.9e-72 276.9 328 47.0
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.4e-72 276.6 374 43.6
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.4e-72 276.6 383 43.1
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 3.2e-72 276.2 390 43.6
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 5.4e-72 275.4 343 45.8
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 5.4e-72 275.4 221 61.1
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 7.1e-72 275.0 343 45.8
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.3e-72 274.6 374 42.8
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 9.3e-72 274.6 343 46.1
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 9.3e-72 274.6 221 60.6
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.1e-71 273.5 370 43.8
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 2.1e-71 273.5 343 45.8
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.7e-71 273.1 322 47.8
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.7e-71 273.1 219 63.0
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 3.5e-71 272.7 347 45.2
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 6.0e-71 271.9 222 61.7
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 7.9e-71 271.6 348 44.8
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.0e-70 271.2 340 45.3
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.3e-70 270.8 346 44.8
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.3e-70 270.8 343 44.9
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 2.3e-70 270.0 367 43.6
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 2.3e-70 270.0 345 44.9
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.3e-70 270.0 366 44.0
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.1e-70 268.9 221 60.6
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 5.1e-70 268.9 227 58.6
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 6.7e-70 268.5 221 60.2
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 2.5e-69 266.5 368 42.7
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 2.5e-69 266.5 365 43.3
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 5.6e-69 265.4 222 59.5
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 9.6e-69 264.6 221 57.9
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 2.8e-68 263.1 219 58.9
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 6.2e-68 261.9 334 45.8
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 5.3e-67 258.8 329 44.1
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 9.0e-67 258.1 213 60.6
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.4e-66 256.1 221 57.9
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 8.4e-65 251.5 231 61.5
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.1e-64 251.1 342 42.7
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.4e-64 250.8 332 49.4
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 4.2e-64 249.2 332 49.4
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 3.9e-62 242.7 217 55.8
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 7.4e-61 238.4 212 51.9
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 7.4e-61 238.4 337 41.2
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 2.8e-60 236.5 221 52.9
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 8.2e-60 235.0 341 42.2
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 6.9e-59 231.9 202 59.4
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 5.8e-58 228.8 314 43.6
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 7.6e-58 228.4 343 42.3
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.7e-57 227.3 312 44.2
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.9e-57 226.5 217 49.8
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 9.3e-56 221.5 377 36.1
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 7.9e-55 218.4 220 50.5
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.8e-54 217.2 221 49.3
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 5.7e-53 212.2 343 41.1
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 7.4e-53 211.8 271 46.1
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 2.2e-52 210.3 346 38.4
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 5.0e-49 199.1 318 40.3
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 5.0e-49 199.1 249 41.8
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 2.5e-48 196.8 274 42.3
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.1e-47 193.7 232 46.1
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.0e-46 191.4 252 44.4
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 3.3e-45 186.4 217 47.0
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 7.7e-42 175.3 271 40.2
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.3e-41 174.5 288 39.9
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.9e-40 170.6 277 40.4
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.4e-38 164.5 232 44.4
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.6e-37 160.2 285 39.3
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.3e-33 147.9 306 36.6
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 2.7e-31 140.2 256 42.2
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 6.7e-30 135.6 147 54.4
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 2.6e-26 123.6 227 34.4
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.1e-24 118.2 219 32.4
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.1e-23 114.0 182 41.2
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 3.6e-23 113.2 220 37.3
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 4.8e-20 102.8 47 95.7
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.4e-19 101.3 121 47.9
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 5.4e-19 99.4 80 61.2
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.5e-16 90.5 71 62.0
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.1e-15 87.4 56 76.8
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 3.6e-15 86.7 56 76.8
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 3.6e-15 86.7 56 76.8
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 3.6e-15 86.7 49 73.5
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 4.7e-15 86.3 48 72.9
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-14 85.1 63 68.3
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-14 85.1 56 75.0
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-14 85.1 56 75.0
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-14 84.7 53 77.4
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 4.0e-14 83.2 68 54.4
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 6.8e-14 82.4 53 75.5
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 4.4e-13 79.7 55 70.9
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 2.8e-12 77.0 41 87.8
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 2.8e-12 77.0 41 87.8
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 8.3e-12 75.5 41 90.2
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 5.4e-11 72.8 51 66.7
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 4.0e-06 56.6 122 30.3


User provided reference genes

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