Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p18250 Brassica napus HOM05D002205 ORTHO05D018573 1.3e-125 453.0 220 100.0
C02p23320 Brassica napus HOM05D002205 ORTHO05D018573 5.8e-81 304.7 216 73.1
BolC8t50387H Brassica oleracea HOM05D002205 ORTHO05D018573 4.3e-76 288.5 213 73.7
BcaC07g39606 Brassica carinata HOM05D002205 ORTHO05D018573 9.7e-60 234.2 136 85.3
C08p27660 Brassica napus HOM05D002205 ORTHO05D018573 2.2e-59 233.0 135 85.2
BcaC03g14864 Brassica carinata HOM05D002205 ORTHO05D018573 8.2e-51 204.5 146 74.7
A07p39660 Brassica napus HOM05D002205 ORTHO05D018573 3.4e-36 156.0 90 85.6
A10p19760 Brassica napus HOM05D002205 ORTHO05D018573 3.4e-36 156.0 90 85.6
BcaC05g27062 Brassica carinata HOM05D002205 ORTHO05D004847 1.5e-31 140.6 104 69.2
C05p29210 Brassica napus HOM05D002205 ORTHO05D004847 1.5e-31 140.6 104 69.2
BolC5t31653H Brassica oleracea HOM05D002205 ORTHO05D004847 1.5e-31 140.6 104 69.2
BcaB07g32640 Brassica carinata HOM05D002205 ORTHO05D004847 2.5e-31 139.8 104 68.3
Sp1g26160 Schrenkiella parvula HOM05D002205 ORTHO05D004847 1.2e-30 137.5 104 68.3
A09p36150 Brassica napus HOM05D002205 ORTHO05D004847 2.1e-30 136.7 104 68.3
BraA09t39142Z Brassica rapa HOM05D002205 ORTHO05D004847 2.1e-30 136.7 104 68.3
CARHR029690 Cardamine hirsuta HOM05D002205 ORTHO05D004847 2.8e-30 136.3 104 69.2
Thhalv10008197m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 3.6e-30 136.0 104 68.3
AT1G30300 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 1.0e-29 134.4 104 68.3
A08p24530 Brassica napus HOM05D002205 ORTHO05D004847 1.0e-29 134.4 116 64.7
GSVIVG01021548001 Vitis vinifera HOM05D002205 ORTHO05D004847 1.4e-29 134.0 129 55.8
VMungo0540G1690 Vigna mungo HOM05D002205 ORTHO05D004847 1.8e-29 133.7 104 63.5
BraA08t34409Z Brassica rapa HOM05D002205 ORTHO05D004847 2.3e-29 133.3 104 68.3
AL1G44250 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 3.0e-29 132.9 104 67.3
Phvul.006G168145 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 3.0e-29 132.9 104 64.4
Aa31LG6G5440 Aethionema arabicum HOM05D002205 ORTHO05D004847 4.0e-29 132.5 104 66.3
BcaC01g00182 Brassica carinata HOM05D002205 ORTHO05D004847 4.0e-29 132.5 104 67.3
BolC3t19922H Brassica oleracea HOM05D002205 ORTHO05D004847 4.0e-29 132.5 104 67.3
Carub.0001s2853 Capsella rubella HOM05D002205 ORTHO05D004847 6.8e-29 131.7 104 68.3
Aqoxy1G01658 Aquilegia oxysepala HOM05D002205 ORTHO05D004847 1.2e-28 131.0 128 54.7
BcaB03g12208 Brassica carinata HOM05D002205 ORTHO05D004847 1.2e-28 131.0 104 67.3
C03p76660 Brassica napus HOM05D002205 ORTHO05D004847 1.5e-28 130.6 104 66.3
FAN21G0057 Fragaria x ananassa HOM05D002205 ORTHO05D004847 1.5e-28 130.6 104 62.5
Glyma.13G221800 Glycine max HOM05D002205 ORTHO05D004847 1.5e-28 130.6 104 63.5
Glyma.15G090400 Glycine max HOM05D002205 ORTHO05D004847 1.5e-28 130.6 104 63.5
Lj6g0014068 Lotus japonicus HOM05D002205 ORTHO05D004847 1.5e-28 130.6 104 63.5
TPR.G26265 Trifolium pratense HOM05D002205 ORTHO05D004847 1.5e-28 130.6 104 63.5
Ca_00510_v3 Cicer arietinum L. HOM05D002205 ORTHO05D004847 2.0e-28 130.2 104 63.5
Lj4g0000856 Lotus japonicus HOM05D002205 ORTHO05D004847 2.0e-28 130.2 112 60.7
PGR083G2813 Punica granatum HOM05D002205 ORTHO05D004847 2.0e-28 130.2 104 62.5
Cpa.g.sc17.50 Carica papaya HOM05D002205 ORTHO05D004847 2.6e-28 129.8 104 62.5
Lalb_Chr15g0086621 Lupinus albus HOM05D002205 ORTHO05D004847 2.6e-28 129.8 104 63.5
Ciclev10015916m.g Citrus clementina HOM05D002205 ORTHO05D004847 4.4e-28 129.0 104 63.5
MBI18_g11219_MAGBIO Magnolia biondii HOM05D002205 ORTHO05D004847 7.5e-28 128.3 106 60.4
Medtr2g018660 Medicago truncatula HOM05D002205 ORTHO05D004847 7.5e-28 128.3 104 62.5
TWI09G0418 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 7.5e-28 128.3 104 62.5
arahy.Tifrunner.gnm1.ann1.4B2CWV Arachis hypogaea HOM05D002205 ORTHO05D004847 9.8e-28 127.9 115 56.5
arahy.Tifrunner.gnm1.ann1.WT34VK Arachis hypogaea HOM05D002205 ORTHO05D004847 9.8e-28 127.9 115 56.5
TWI73G0911 Tripterygium wilfordii HOM05D002205 ORTHO05D004847 9.8e-28 127.9 104 61.5
Glyma.05G143300 Glycine max HOM05D002205 ORTHO05D004847 1.7e-27 127.1 104 63.5
PSO541G1418 Papaver somniferum HOM05D002205 ORTHO05D004847 2.2e-27 126.7 104 62.5
BcaC08g44593 Brassica carinata HOM05D002205 ORTHO05D017586 2.8e-27 126.3 149 53.7
CANSAT35G0337 Cannabis sativa HOM05D002205 ORTHO05D004847 2.8e-27 126.3 104 62.5
Gohir.D06G144600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 2.8e-27 126.3 104 62.5
Gorai.010G168300 Gossypium raimondii HOM05D002205 ORTHO05D004847 2.8e-27 126.3 104 62.5
Hma1.2p1_0318F.1_g123750 Hydrangea macrophylla HOM05D002205 ORTHO05D004847 2.8e-27 126.3 109 62.4
Psat1g192120 Pisum sativum HOM05D002205 ORTHO05D004847 2.8e-27 126.3 104 62.5
Sc05g0005980 Simmondsia chinensis HOM05D002205 ORTHO05D004847 2.8e-27 126.3 104 61.5
CiPaw.09G119700 Carya illinoinensis HOM05D002205 ORTHO05D004847 3.7e-27 125.9 104 60.6
CDE05G1148 Ceratophyllum demersum HOM05D002205 ORTHO05D004847 3.7e-27 125.9 104 61.5
COL.COLO4_31010 Corchorus olitorius HOM05D002205 ORTHO05D004847 3.7e-27 125.9 104 62.5
FAN25G1086 Fragaria x ananassa HOM05D002205 ORTHO05D004847 3.7e-27 125.9 104 60.6
Manes.17G074200 Manihot esculenta HOM05D002205 ORTHO05D004847 3.7e-27 125.9 104 61.5
BcaC03g15881 Brassica carinata HOM05D003212 ORTHO05D017586 4.9e-27 125.6 149 53.7
Nn3g20332 Nelumbo nucifera HOM05D002205 ORTHO05D004847 4.9e-27 125.6 104 58.7
TAR627G0288 Trochodendron aralioides HOM05D002205 ORTHO05D004847 4.9e-27 125.6 104 59.6
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 6.3e-27 125.2 104 58.7
FAN11G0257 Fragaria x ananassa HOM05D002205 ORTHO05D004847 6.3e-27 125.2 104 59.6
Zm00001eb031800 Zea mays HOM05D002205 ORTHO05D004847 6.3e-27 125.2 154 48.1
Gohir.A06G139900 Gossypium hirsutum HOM05D002205 ORTHO05D004847 1.1e-26 124.4 104 61.5
Oeu015213.1 Olea europaea HOM05D002205 ORTHO05D004847 1.1e-26 124.4 104 61.5
Gohir.A06G196100 Gossypium hirsutum HOM05D002205 ORTHO05D004847 1.4e-26 124.0 104 61.5
Ah.14g086280 Amaranthus hybridus HOM05D002205 ORTHO05D004847 1.8e-26 123.6 107 58.9
Potri.011G081600 Populus trichocarpa HOM05D002205 ORTHO05D004847 1.8e-26 123.6 104 59.6
Prupe.4G085600 Prunus persica HOM05D002205 ORTHO05D004847 1.8e-26 123.6 155 44.5
Cfa000899 Carpinus fangiana HOM05D002205 ORTHO05D004847 2.4e-26 123.2 104 58.7
RcHm_v2.0_Chr5g0014931 Rosa chinensis HOM05D002205 ORTHO05D004847 2.4e-26 123.2 104 59.6
Atru.chr10.1082 Acer truncatum HOM05D002205 ORTHO05D004847 4.1e-26 122.5 103 58.3
MD05G1279500 Malus domestica HOM05D002205 ORTHO05D004847 4.1e-26 122.5 154 44.8
Gohir.D06G203600 Gossypium hirsutum HOM05D002205 ORTHO05D004847 5.4e-26 122.1 104 59.6
Gorai.010G237500 Gossypium raimondii HOM05D002205 ORTHO05D004847 5.4e-26 122.1 104 59.6
Thecc.06G144400 Theobroma cacao HOM05D002205 ORTHO05D004847 5.4e-26 122.1 104 60.6
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 1.2e-25 120.9 104 61.5
BcaC01g06666 Brassica carinata HOM05D002205 ORTHO05D004847 2.0e-25 120.2 108 58.3
Dinv21519 Davidia involucrata HOM05D002205 ORTHO05D004847 2.0e-25 120.2 109 59.6
Duzib235G1243 Durio zibethinus HOM05D002205 ORTHO05D004847 2.0e-25 120.2 133 51.9
AUR62030135 Chenopodium quinoa HOM05D002205 ORTHO05D004847 2.7e-25 119.8 104 59.6
arahy.Tifrunner.gnm1.ann1.R7LP1S Arachis hypogaea HOM05D002205 ORTHO05D004847 3.5e-25 119.4 115 52.2
EL10Ac8g19627 Beta vulgaris HOM05D002205 ORTHO05D004847 3.5e-25 119.4 129 51.9
A09p02870 Brassica napus HOM05D002205 ORTHO05D004847 3.5e-25 119.4 107 57.9
Duzib192G0694 Durio zibethinus HOM05D002205 ORTHO05D004847 3.5e-25 119.4 129 51.9
MD10G1258200 Malus domestica HOM05D002205 ORTHO05D004847 3.5e-25 119.4 128 49.2
FAN16G1117 Fragaria x ananassa HOM05D002205 ORTHO05D004847 4.5e-25 119.0 122 51.6
BolC3t15977H Brassica oleracea HOM05D002205 ORTHO05D004847 7.8e-25 118.2 108 57.4
ATR1098G096 Amborella trichopoda HOM05D002205 ORTHO05D004847 1.0e-24 117.9 104 55.8
AT4G03610 Arabidopsis thaliana HOM05D002205 ORTHO05D004847 1.0e-24 117.9 106 57.5
MSTRG.7513 Avicennia marina HOM05D002205 ORTHO05D004847 1.3e-24 117.5 104 57.7
PGSC0003DMG400002293 Solanum tuberosum HOM05D002205 ORTHO05D004847 1.3e-24 117.5 105 60.0
HPP92_018655 Vanilla planifolia HOM05D002205 ORTHO05D004847 1.3e-24 117.5 92 62.0
Actinidia13441 Actinidia chinensis HOM05D002205 ORTHO05D004847 1.7e-24 117.1 109 57.8
BcaB01g02544 Brassica carinata HOM05D002205 ORTHO05D004847 1.7e-24 117.1 106 58.5
Phvul.002G178000 Phaseolus vulgaris HOM05D002205 ORTHO05D004847 1.7e-24 117.1 104 58.7
Sabra11G0065700 Salix brachista HOM05D002205 ORTHO05D004847 1.7e-24 117.1 104 57.7
BraA09t35932Z Brassica rapa HOM05D002205 ORTHO05D004847 2.3e-24 116.7 106 57.5
CSS0050225 Camellia sinensis var. sinensis HOM05D002205 ORTHO05D004847 2.3e-24 116.7 97 60.8
Manes.01G173000 Manihot esculenta HOM05D002205 ORTHO05D004847 2.3e-24 116.7 129 48.8
Solyc08g023500.4 Solanum lycopersicum HOM05D002205 ORTHO05D004847 2.3e-24 116.7 112 57.1
SGA_v2.0_scaffold120G32940 Striga asiatica HOM05D002205 ORTHO05D004847 2.3e-24 116.7 104 59.6
BcaB01g01908 Brassica carinata HOM05D002205 ORTHO05D004847 2.9e-24 116.3 106 57.5
BraA03t12216Z Brassica rapa HOM05D002205 ORTHO05D004847 2.9e-24 116.3 108 57.4
C03p36630 Brassica napus HOM05D002205 ORTHO05D004847 3.8e-24 115.9 108 56.5
Sp6g03600 Schrenkiella parvula HOM05D002205 ORTHO05D004847 3.8e-24 115.9 106 56.6
Sed0018506 Sechium edule HOM05D002205 ORTHO05D004847 3.8e-24 115.9 104 56.7
Sopen08g008680 Solanum pennellii HOM05D002205 ORTHO05D004847 3.8e-24 115.9 104 59.6
AL6G49170 Arabidopsis lyrata HOM05D002205 ORTHO05D004847 5.0e-24 115.5 106 57.5
BcaC04g23959 Brassica carinata HOM05D002205 ORTHO05D004847 5.0e-24 115.5 106 56.6
BolC9t53222H Brassica oleracea HOM05D002205 ORTHO05D004847 5.0e-24 115.5 106 56.6
CARHR252020 Cardamine hirsuta HOM05D002205 ORTHO05D004847 5.0e-24 115.5 106 56.6
C09p02950 Brassica napus HOM05D002205 ORTHO05D004847 6.6e-24 115.2 106 56.6
C02p36490 Brassica napus HOM05D002205 ORTHO05D017586 8.6e-24 114.8 169 47.3
C06p20640 Brassica napus HOM05D002205 ORTHO05D017586 1.1e-23 114.4 169 47.3
A03p30340 Brassica napus HOM05D002205 ORTHO05D004847 1.5e-23 114.0 108 56.5
SEGI_24320 Sequoiadendron giganteum HOM05D002205 ORTHO05D004847 1.5e-23 114.0 104 53.8
CAN.G103.15 Capsicum annuum HOM05D002205 ORTHO05D004847 2.5e-23 113.2 104 57.7
Nitab4.5_0002071g0030 Nicotiana tabacum HOM05D002205 ORTHO05D004847 2.5e-23 113.2 104 58.7
Carub.0006s3345 Capsella rubella HOM05D002205 ORTHO05D004847 3.3e-23 112.8 106 56.6
MELO3C002770.2 Cucumis melo HOM05D002205 ORTHO05D004847 4.3e-23 112.5 104 55.8
Sed0018770 Sechium edule HOM05D002205 ORTHO05D004847 4.3e-23 112.5 133 47.4
Hund17750 Selenicereus undatus HOM05D002205 ORTHO05D004847 4.3e-23 112.5 104 55.8
CsaV3_1G036870 Cucumis sativus L. HOM05D002205 ORTHO05D004847 5.6e-23 112.1 104 55.8
Peaxi162Scf00045g02427 Petunia axillaris HOM05D002205 ORTHO05D004847 5.6e-23 112.1 104 58.7
Actinidia09937 Actinidia chinensis HOM05D002205 ORTHO05D004847 7.3e-23 111.7 109 56.0
Cc00_g02010 Coffea canephora HOM05D002205 ORTHO05D004847 7.3e-23 111.7 116 51.7
Manes.01G173100 Manihot esculenta HOM05D002205 ORTHO05D004847 7.3e-23 111.7 104 56.7
VMungo0251G1393 Vigna mungo HOM05D002205 ORTHO05D004847 7.3e-23 111.7 123 50.4
Migut.K01167 Erythranthe guttata HOM05D002205 ORTHO05D004847 9.5e-23 111.3 116 52.6
Eucgr.D00270 Eucalyptus grandis HOM05D002205 ORTHO05D004847 9.5e-23 111.3 104 58.7
Thhalv10028809m.g Eutrema salsugineum HOM05D002205 ORTHO05D004847 9.5e-23 111.3 106 54.7
Nitab4.5_0000315g0040 Nicotiana tabacum HOM05D002205 ORTHO05D004847 9.5e-23 111.3 104 57.7
THA.LOC104812309 Tarenaya hassleriana HOM05D002205 ORTHO05D004847 9.5e-23 111.3 112 51.8
QL05p055095 Quercus lobata HOM05D002205 ORTHO05D004847 1.6e-22 110.5 158 42.4
Rhsim13G0117500 Rhododendron simsii HOM05D002205 ORTHO05D004847 1.6e-22 110.5 104 57.7
Lsat_1_v5_gn_4_29840 Lactuca sativa HOM05D002205 ORTHO05D004847 4.7e-22 109.0 104 56.7
BolC2t09647H Brassica oleracea HOM05D003212 ORTHO05D017586 1.4e-21 107.5 93 61.3
ECA234G0538 Erigeron canadensis HOM05D002205 ORTHO05D004847 3.0e-21 106.3 104 53.8
HanXRQChr17g0564031 Helianthus annuus HOM05D002205 ORTHO05D004847 3.0e-21 106.3 109 54.1
Aa31LG9G8880 Aethionema arabicum HOM05D002205 ORTHO05D004847 6.8e-21 105.1 106 53.8
Os03g0643250 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 1.5e-20 104.0 107 50.5
unitig_37.g12087 Utricularia gibba HOM05D002205 ORTHO05D004847 3.4e-20 102.8 104 51.0
Rhsim13G0117600 Rhododendron simsii HOM05D002205 ORTHO05D004847 4.4e-20 102.4 109 52.3
arahy.Tifrunner.gnm1.ann1.PSQD3A Arachis hypogaea HOM05D002205 ORTHO05D004847 5.7e-20 102.1 93 53.8
SMO118G0510 Selaginella moellendorffii HOM05D002205 ORTHO05D004847 5.7e-20 102.1 126 47.6
Dinv32214 Davidia involucrata HOM05D002205 ORTHO05D004847 1.3e-19 100.9 95 57.9
Pp3c3_9110 Physcomitrium patens HOM05D002205 ORTHO05D004847 1.8e-18 97.1 104 50.0
vmacro03432 Vaccinium macrocarpon HOM05D002205 ORTHO05D004847 1.8e-18 97.1 125 44.8
AUR62002680 Chenopodium quinoa HOM05D002205 ORTHO05D004847 7.8e-17 91.7 87 56.3
ClCG03G006500 Citrullus lanatus HOM05D002205 ORTHO05D004847 7.8e-17 91.7 158 36.7
Mapoly0054s0026 Marchantia polymorpha HOM05D002205 ORTHO05D004847 1.3e-16 90.9 105 46.7
FvH4_3g05040 Fragaria vesca HOM05D002205 ORTHO05D004847 5.0e-16 89.0 55 72.7
Gorai.007G245400 Gossypium raimondii HOM05D002205 ORTHO05D004847 4.3e-15 85.9 55 74.5
Glyma.08G231600 Glycine max HOM05D002205 ORTHO05D004847 6.2e-14 82.0 74 58.1
Glyma.08G099700 Glycine max HOM05D002205 ORTHO05D004847 4.0e-13 79.3 74 59.5
C04p36940 Brassica napus HOM05D002205 ORTHO05D101377 8.9e-13 78.2 39 89.7
AagrBONN_evm.TU.Sc2ySwM_344.1912 Anthoceros agrestis HOM05D002205 ORTHO05D004847 1.5e-12 77.4 118 40.7
BraA10t43114Z Brassica rapa HOM05D002205 ORTHO05D017586 5.8e-12 75.5 61 63.9
Zm00001eb083760 Zea mays HOM05D002205 ORTHO05D004847 1.1e-10 71.2 53 64.2
Os03g0642900 Oryza sativa ssp. japonica HOM05D002205 ORTHO05D004847 1.4e-10 70.9 53 64.2
Zm00001eb050530 Zea mays HOM05D002205 ORTHO05D004847 7.0e-10 68.6 57 63.2
SHI10514 Sapria himalayana HOM05D002205 ORTHO05D004847 1.7e-08 63.9 40 70.0
PRCOL_00004844 Prasinoderma coloniale HOM05D002205 ORTHO05D004847 3.0e-08 63.2 102 37.3
BcaB01g04040 Brassica carinata HOM05D003212 ORTHO05D017537 1.5e-07 60.8 45 66.7
BcaB05g24115 Brassica carinata HOM05D003212 ORTHO05D017537 3.3e-07 59.7 45 64.4
BolC6t37247H Brassica oleracea HOM05D003212 ORTHO05D017586 4.3e-07 59.3 120 40.0
Gohir.D11G230780 Gossypium hirsutum HOM05D002205 ORTHO05D004847 7.3e-07 58.5 35 74.3
BcaC05g27724 Brassica carinata HOM05D003212 ORTHO05D017537 9.5e-07 58.2 49 69.4
C05p37050 Brassica napus HOM05D003212 ORTHO05D017537 9.5e-07 58.2 49 69.4
C09p44450 Brassica napus HOM05D003212 ORTHO05D017537 9.5e-07 58.2 49 69.4
DCAR_027888 Daucus carota HOM05D002205 ORTHO05D004847 1.6e-06 57.4 68 47.1
BcaC03g17911 Brassica carinata HOM05D003212 ORTHO05D017537 2.1e-06 57.0 45 64.4


User provided reference genes

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