Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 4.1e-125 451.4 233 100.0
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 2.6e-95 352.4 193 94.8
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.2e-92 343.6 196 92.9
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.3e-91 340.1 196 91.8
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 7.3e-90 334.3 197 91.4
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 9.5e-90 334.0 193 91.2
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 4.0e-88 328.6 193 89.1
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.9e-85 319.7 194 86.1
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 2.3e-83 312.8 193 84.5
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 3.0e-83 312.4 194 84.0
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.5e-82 310.1 196 86.7
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.5e-82 310.1 193 84.5
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.4e-80 303.5 190 84.7
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.2e-79 300.4 190 84.2
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 2.0e-79 299.7 190 83.2
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 7.6e-79 297.7 194 83.0
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 2.1e-76 289.7 184 83.2
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.3e-70 270.4 173 80.9
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.7e-67 260.0 198 70.7
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 5.1e-67 258.5 178 75.8
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 3.3e-66 255.8 157 81.5
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 5.6e-66 255.0 206 68.4
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.1e-65 253.1 175 74.3
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.8e-65 252.7 203 67.0
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.8e-65 252.7 203 67.0
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.6e-65 252.3 201 67.2
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 3.6e-65 252.3 174 73.0
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 8.1e-65 251.1 185 71.4
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 1.1e-64 250.8 156 80.1
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.4e-64 249.6 157 79.0
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 2.4e-64 249.6 156 79.5
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 2.4e-64 249.6 201 67.7
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 3.1e-64 249.2 157 78.3
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.0e-64 248.8 193 67.9
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.0e-64 248.8 156 79.5
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 6.9e-64 248.1 179 72.6
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 6.9e-64 248.1 202 66.3
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 9.0e-64 247.7 156 81.4
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 7.6e-63 244.6 174 70.7
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.7e-62 243.4 157 75.8
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 2.9e-62 242.7 155 79.4
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.9e-62 241.9 185 67.0
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 6.4e-62 241.5 151 79.5
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 6.4e-62 241.5 157 75.2
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 8.4e-62 241.1 157 77.7
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.9e-61 240.0 185 66.5
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.9e-61 240.0 185 67.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.4e-61 238.4 221 57.0
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 7.1e-61 238.0 156 76.3
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 7.1e-61 238.0 156 76.3
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 7.1e-61 238.0 185 65.9
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 9.3e-61 237.7 198 63.6
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 9.3e-61 237.7 158 74.7
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 9.3e-61 237.7 162 72.8
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.2e-60 237.3 172 72.1
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.6e-60 236.9 172 72.1
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 2.1e-60 236.5 155 76.1
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.1e-60 236.5 155 76.1
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 2.7e-60 236.1 178 69.7
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.7e-60 236.1 161 75.2
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 3.5e-60 235.7 178 70.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 7.9e-60 234.6 157 75.8
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.0e-59 234.2 199 62.8
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.3e-59 233.0 154 75.3
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.3e-59 233.0 148 79.1
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.0e-59 232.6 162 72.8
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 3.0e-59 232.6 154 76.0
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 3.9e-59 232.3 172 70.3
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 5.1e-59 231.9 172 71.5
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 5.1e-59 231.9 163 72.4
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 6.7e-59 231.5 156 73.7
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 6.7e-59 231.5 172 70.3
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 6.7e-59 231.5 155 73.5
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 8.7e-59 231.1 177 68.4
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 8.7e-59 231.1 156 73.1
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 1.5e-58 230.3 209 61.2
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.9e-58 229.9 157 75.8
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.5e-58 229.6 159 73.6
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.3e-58 228.8 156 73.1
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 7.4e-58 228.0 156 74.4
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 9.6e-58 227.6 154 74.0
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.3e-57 227.3 161 72.7
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 2.8e-57 226.1 156 73.7
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 2.8e-57 226.1 177 68.4
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.8e-57 226.1 147 76.2
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.7e-57 225.7 158 72.8
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 8.1e-57 224.6 156 74.4
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 8.1e-57 224.6 156 74.4
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.8e-56 223.4 154 72.1
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.8e-56 223.4 156 71.2
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 2.4e-56 223.0 155 71.6
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 6.9e-56 221.5 157 72.6
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.9e-56 221.5 155 71.0
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 6.9e-56 221.5 155 72.9
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 9.0e-56 221.1 195 63.1
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.2e-55 220.7 155 70.3
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.5e-55 220.3 157 70.7
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.0e-55 219.9 156 71.2
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 2.6e-55 219.5 156 70.5
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 2.6e-55 219.5 156 71.2
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.4e-55 219.2 154 71.4
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 3.4e-55 219.2 156 70.5
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.3e-54 217.2 155 70.3
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.3e-54 217.2 153 72.5
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.2e-54 216.5 156 69.9
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 2.2e-54 216.5 146 74.7
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 3.8e-54 215.7 156 71.2
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.9e-54 215.3 151 72.2
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 8.4e-54 214.5 154 70.1
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 8.4e-54 214.5 152 71.1
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 8.4e-54 214.5 152 71.1
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.1e-53 214.2 156 70.5
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.1e-53 214.2 163 68.1
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 4.2e-53 212.2 165 67.3
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.6e-52 210.3 165 66.7
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.0e-51 207.6 155 68.4
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.8e-51 206.8 200 57.0
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 2.3e-51 206.5 157 67.5
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.3e-51 206.5 158 67.7
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.1e-50 204.1 164 66.5
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.9e-50 203.4 187 57.8
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 4.8e-49 198.7 150 67.3
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.1e-48 197.6 154 65.6
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 4.0e-48 195.7 139 70.5
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 5.3e-48 195.3 147 66.7
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.0e-46 191.0 138 68.8
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.7e-46 190.3 141 66.0
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 4.2e-45 185.7 132 72.0
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.6e-44 183.7 147 67.3
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.5e-44 182.6 184 54.9
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.5e-44 182.6 184 54.9
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 3.9e-43 179.1 161 60.2
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.3e-42 176.0 161 59.0
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.3e-41 174.1 156 60.9
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 3.7e-41 172.6 109 78.9
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.1e-40 171.0 156 60.3
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.4e-40 169.9 153 59.5
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.5e-39 167.2 199 47.7
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 1.1e-37 161.0 125 65.6
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 5.5e-37 158.7 100 81.0
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 5.1e-35 152.1 128 66.4
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.7e-35 151.4 154 57.8
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.7e-33 146.0 132 59.8
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.7e-33 146.0 132 61.4
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.6e-31 139.8 99 66.7
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 3.8e-30 136.0 103 68.9
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.4e-29 134.0 132 54.5
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 2.5e-29 133.3 71 95.8
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 3.9e-27 125.9 93 74.2
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 3.9e-27 125.9 93 74.2
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 2.6e-23 113.2 64 92.2
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 3.4e-23 112.8 75 72.0
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.3e-22 110.9 79 70.9
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.1e-16 89.4 68 60.3
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 2.2e-14 83.6 103 41.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 3.2e-13 79.7 105 38.1
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 6.1e-12 75.5 118 38.1


User provided reference genes

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