Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-85 320.1 177 100.0
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 4.5e-84 314.7 156 100.0
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 2.2e-78 295.8 184 91.8
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.5e-71 273.1 184 82.6
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.5e-71 273.1 184 82.6
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 4.7e-65 251.5 192 71.9
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 3.2e-61 238.8 169 78.1
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 6.0e-60 234.6 190 71.6
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 7.8e-60 234.2 170 76.5
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-58 230.3 169 75.7
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.6e-57 226.5 177 74.0
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 9.9e-55 217.2 166 76.5
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 7.1e-53 211.1 170 70.0
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.6e-52 209.9 171 67.3
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.6e-52 209.9 173 72.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 2.3e-51 206.1 173 71.1
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 8.9e-48 194.1 176 61.9
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.6e-44 183.3 173 59.0
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.7e-43 179.9 175 60.6
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.6e-25 120.2 66 90.9
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 4.8e-25 118.6 176 46.6
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 5.3e-24 115.2 177 45.2
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-23 113.6 172 48.3
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 2.6e-23 112.8 172 45.3
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 4.5e-23 112.1 172 47.7
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.0e-22 110.9 172 47.1
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 1.7e-22 110.2 151 46.4
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 4.9e-22 108.6 176 45.5
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.5e-22 108.2 171 46.8
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.4e-21 107.1 174 42.5
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 5.5e-21 105.1 157 42.0
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 7.1e-21 104.8 152 50.7
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.2e-20 104.0 183 44.3
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 1.6e-20 103.6 150 51.3
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 2.1e-20 103.2 178 44.4
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 2.1e-20 103.2 160 43.8
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 3.5e-20 102.4 167 41.9
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 7.9e-20 101.3 169 42.6
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.3e-19 100.5 153 49.0
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.8e-19 100.1 173 42.2
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.8e-19 100.1 153 49.0
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.8e-19 100.1 169 42.0
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 2.3e-19 99.8 190 40.5
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.3e-19 99.8 175 41.7
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 3.0e-19 99.4 187 35.8
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.1e-19 98.6 186 41.4
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.7e-19 98.2 153 48.4
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.1e-18 97.4 183 41.5
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.5e-18 97.1 181 42.5
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.5e-18 97.1 183 39.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.9e-18 96.7 164 37.2
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.5e-18 96.3 170 40.6
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 2.5e-18 96.3 169 40.2
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 3.3e-18 95.9 161 41.6
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 5.7e-18 95.1 206 39.3
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 5.7e-18 95.1 183 39.3
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 5.7e-18 95.1 183 39.3
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 5.7e-18 95.1 141 51.1
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 7.4e-18 94.7 190 38.4
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 9.6e-18 94.4 172 38.4
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.3e-17 94.0 173 37.6
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.1e-17 93.2 146 46.6
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 2.1e-17 93.2 175 37.7
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 2.8e-17 92.8 173 39.9
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.8e-17 92.8 171 42.7
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 2.8e-17 92.8 186 42.5
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.7e-17 92.4 173 41.0
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.8e-17 92.0 171 42.7
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 4.8e-17 92.0 171 39.2
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 6.2e-17 91.7 184 38.0
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 6.2e-17 91.7 154 36.4
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 8.2e-17 91.3 183 40.4
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 8.2e-17 91.3 169 40.2
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 1.1e-16 90.9 158 39.9
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.4e-16 90.5 183 41.0
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.8e-16 90.1 180 40.0
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.8e-16 90.1 178 38.8
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.4e-16 89.7 188 35.1
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.4e-16 89.7 168 40.5
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 5.3e-16 88.6 164 37.8
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.3e-16 88.6 143 45.5
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 5.3e-16 88.6 143 45.5
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 5.3e-16 88.6 192 35.9
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 6.9e-16 88.2 160 38.8
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 9.0e-16 87.8 151 41.7
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.5e-15 87.0 160 38.1
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 2.6e-15 86.3 158 35.4
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 7.6e-15 84.7 176 38.6
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 7.6e-15 84.7 170 40.0
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 7.6e-15 84.7 148 41.2
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.7e-14 83.6 197 36.0
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 2.2e-14 83.2 172 37.2
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.2e-14 83.2 128 48.4
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.9e-14 82.8 158 39.9
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.8e-14 82.4 164 38.4
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 3.8e-14 82.4 149 37.6
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 5.0e-14 82.0 141 40.4
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 6.5e-14 81.6 176 36.4
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 6.5e-14 81.6 169 38.5
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 8.4e-14 81.3 153 39.2
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 8.4e-14 81.3 195 34.9
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.9e-13 80.1 199 34.2
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 2.5e-13 79.7 166 38.6
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.2e-13 79.3 114 43.0
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.2e-13 79.3 114 43.0
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.2e-13 79.0 155 40.0
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 5.5e-13 78.6 176 37.5
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 5.5e-13 78.6 159 36.5
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 9.3e-13 77.8 148 37.8
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 9.3e-13 77.8 164 35.4
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.2e-12 77.4 146 37.7
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.6e-12 77.0 175 36.0
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.6e-12 77.0 162 41.4
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 3.5e-12 75.9 76 53.9
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 4.6e-12 75.5 171 37.4
CARHR119180 Cardamine hirsuta HOM05D004654 ORTHO05D005414 6.1e-12 75.1 84 58.3
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.3e-11 73.9 69 55.1
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.8e-11 73.6 170 35.9
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.8e-11 73.6 69 52.2
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.8e-11 73.6 69 52.2
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.3e-11 73.2 167 38.3
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 2.3e-11 73.2 164 37.8
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 3.0e-11 72.8 139 38.8
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 3.0e-11 72.8 168 35.1
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.0e-11 72.8 120 40.8
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 3.9e-11 72.4 178 34.3
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.7e-11 71.6 155 38.7
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 6.7e-11 71.6 107 43.9
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 6.7e-11 71.6 179 35.8
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 8.7e-11 71.2 188 34.6
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 2.5e-10 69.7 154 34.4
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 3.3e-10 69.3 125 39.2
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 7.4e-10 68.2 133 38.3
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.3e-09 67.4 74 50.0
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.6e-09 67.0 68 55.9
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 6.3e-09 65.1 173 32.9
C01p51750 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-08 64.3 38 78.9
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 2.4e-08 63.2 74 48.6
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 6.9e-08 61.6 122 41.8
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 9.0e-08 61.2 63 54.0
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 9.0e-08 61.2 61 49.2
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.2e-07 60.8 156 32.1
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.0e-07 60.1 66 45.5
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 3.4e-07 59.3 76 46.1
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 4.5e-07 58.9 117 38.5
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.7e-07 58.2 67 47.8
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.7e-06 57.0 192 33.9
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 2.9e-06 56.2 92 41.3
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 3.8e-06 55.8 98 37.8
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 8.5e-06 54.7 151 30.5


User provided reference genes

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