Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 5.4e-66 254.2 131 100.0
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 5.4e-66 254.2 131 100.0
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 5.0e-64 247.7 131 96.9
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 2.5e-63 245.4 131 96.2
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.3e-63 244.6 129 96.9
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.6e-57 226.1 132 90.9
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 6.0e-57 224.2 132 91.7
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 6.6e-56 220.7 132 89.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.0e-52 209.1 130 85.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 9.2e-50 200.3 132 84.1
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.0e-48 196.8 132 81.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 3.0e-48 195.3 132 83.3
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 8.6e-48 193.7 132 82.6
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 8.6e-48 193.7 132 82.6
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 7.1e-42 174.1 132 72.7
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.3e-38 163.3 138 68.1
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 9.9e-36 153.7 123 69.1
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 5.4e-34 147.9 92 88.0
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 5.4e-34 147.9 92 88.0
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 5.1e-24 114.8 124 58.1
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 6.7e-24 114.4 124 58.9
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 8.7e-24 114.0 125 54.4
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.5e-23 112.5 125 55.2
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 3.3e-23 112.1 125 55.2
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 3.3e-23 112.1 123 55.3
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.1e-22 109.4 130 53.1
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 4.8e-22 108.2 117 53.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 8.1e-22 107.5 123 56.1
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.1e-21 107.1 131 52.7
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-21 106.7 123 56.1
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.4e-21 105.9 123 56.1
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 6.9e-21 104.4 119 55.5
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 9.0e-21 104.0 120 54.2
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.5e-20 103.2 131 48.9
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.5e-20 103.2 126 54.0
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.5e-20 103.2 123 54.5
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.0e-20 102.8 126 50.0
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.4e-20 102.1 125 50.4
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.6e-20 100.9 113 51.3
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.3e-19 100.1 118 51.7
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.2e-19 99.4 123 52.0
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 2.2e-19 99.4 136 50.0
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.9e-19 99.0 123 52.0
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.9e-19 99.0 112 52.7
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 3.8e-19 98.6 124 53.2
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 4.9e-19 98.2 124 53.2
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 4.9e-19 98.2 128 53.1
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.9e-19 98.2 123 51.2
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 6.5e-19 97.8 126 49.2
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 6.5e-19 97.8 119 53.8
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.1e-18 97.1 124 50.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-18 96.3 119 53.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.1e-18 94.4 129 50.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 9.3e-18 94.0 116 45.7
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.6e-17 93.2 117 47.0
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.6e-17 93.2 128 48.4
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.6e-17 93.2 125 51.2
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.6e-17 93.2 139 44.6
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.1e-17 92.8 125 48.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.1e-17 92.8 114 50.0
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.1e-17 92.8 123 49.6
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.7e-17 92.4 130 50.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 3.5e-17 92.0 135 47.4
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.5e-17 92.0 133 48.9
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.8e-16 89.7 130 52.3
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.3e-16 89.4 123 45.5
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.3e-16 89.4 137 43.8
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 2.3e-16 89.4 114 50.9
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 3.0e-16 89.0 136 45.6
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 5.1e-16 88.2 125 48.8
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.7e-16 87.4 122 45.9
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 8.7e-16 87.4 133 47.4
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 8.7e-16 87.4 111 48.6
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.9e-15 86.3 137 44.5
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.9e-15 86.3 112 50.9
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.3e-15 85.5 125 50.4
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.3e-15 85.1 122 45.1
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.3e-15 85.1 122 45.1
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.3e-15 85.1 122 45.1
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 4.3e-15 85.1 113 49.6
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 5.7e-15 84.7 112 45.5
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 7.4e-15 84.3 120 43.3
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.6e-14 83.2 120 50.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.3e-14 81.3 116 44.8
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.1e-13 80.5 146 39.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.4e-13 80.1 136 41.9
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.4e-13 80.1 119 45.4
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.8e-13 79.7 110 47.3
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.8e-13 79.7 112 48.2
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.4e-13 79.3 126 46.0
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.4e-13 79.3 116 39.7
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 3.1e-13 79.0 122 47.5
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 3.1e-13 79.0 131 45.8
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.1e-13 78.6 125 42.4
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.1e-13 78.6 121 43.0
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 9.0e-13 77.4 108 47.2
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.0e-13 77.4 118 44.9
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.0e-13 77.4 118 44.9
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 9.0e-13 77.4 123 39.8
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-12 77.0 129 45.0
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.2e-12 77.0 120 40.8
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 96 52.1
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 120 40.8
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.2e-12 77.0 118 45.8
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.5e-12 76.6 131 41.2
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-12 76.6 120 41.7
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.0e-12 76.3 122 41.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.0e-12 76.3 111 43.2
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.0e-12 76.3 118 44.9
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.6e-12 75.9 128 39.1
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 2.6e-12 75.9 119 46.2
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 4.5e-12 75.1 119 41.2
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.5e-12 75.1 126 43.7
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 4.5e-12 75.1 114 44.7
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 4.5e-12 75.1 123 39.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.9e-12 74.7 114 43.9
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.9e-12 74.7 96 51.0
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 7.6e-12 74.3 86 53.5
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.0e-11 73.9 111 42.3
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-11 73.2 113 45.1
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.0e-11 71.6 114 40.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-11 71.2 115 43.5
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 8.4e-11 70.9 128 35.2
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.4e-11 70.9 108 46.3
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-10 70.5 114 43.9
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-10 70.5 110 40.9
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.4e-10 70.1 126 40.5
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.9e-10 69.7 154 35.7
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.9e-10 69.7 128 39.8
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.5e-10 69.3 128 39.1
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 2.5e-10 69.3 111 42.3
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 4.2e-10 68.6 149 35.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 9.3e-10 67.4 117 44.4
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.2e-09 67.0 137 40.9
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.6e-09 66.6 132 40.2
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.6e-09 66.6 110 42.7
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.1e-09 66.2 117 43.6
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.1e-09 66.2 114 37.7
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.7e-09 65.9 109 43.1
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.5e-09 65.5 115 37.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 6.1e-09 64.7 127 40.9
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.8e-08 63.2 122 39.3
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.3e-08 62.8 101 45.5
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.3e-08 62.8 69 53.6
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.0e-08 62.4 140 32.9
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 5.1e-08 61.6 150 33.3


User provided reference genes

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