Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 0.0e+00 1108.2 570 100.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 0.0e+00 1108.2 570 100.0
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 0.0e+00 1095.1 565 99.1
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 0.0e+00 1095.1 565 99.1
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 0.0e+00 1095.1 565 99.1
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.7e-311 1071.2 570 96.1
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 5.8e-311 1070.1 570 96.3
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 7.8e-311 1069.7 570 96.3
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 2.3e-310 1068.1 570 96.1
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 6.1e-308 1060.1 567 95.1
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 6.4e-305 1050.0 567 94.0
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 4.6e-303 1043.9 567 93.8
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.9e-301 1038.5 599 90.7
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 5.8e-298 1026.9 570 93.2
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 8.3e-297 1023.1 574 92.9
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-294 1016.1 570 92.1
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.8e-275 952.2 548 89.1
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 2.3e-270 935.3 566 84.6
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 1.0e-262 909.8 476 96.8
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.0e-262 909.8 558 83.2
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.3e-262 908.7 571 82.1
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.0e-262 908.3 552 83.2
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.9e-262 907.9 554 83.6
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 5.1e-262 907.5 552 83.0
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.8e-260 901.7 503 88.7
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.8e-260 901.0 554 82.3
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 6.2e-260 900.6 549 83.4
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 8.1e-260 900.2 569 82.2
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 2.0e-258 895.6 573 80.5
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.0e-257 893.3 524 85.3
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.3e-257 892.9 554 81.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.2e-257 892.1 554 81.4
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.9e-257 891.7 569 81.2
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.4e-256 889.4 569 80.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 3.2e-256 888.3 524 84.2
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 3.2e-256 888.3 513 85.8
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 5.5e-256 887.5 574 79.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 4.6e-255 884.4 554 80.9
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 7.9e-255 883.6 523 83.6
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.3e-254 882.9 571 79.3
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 2.3e-254 882.1 565 79.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 3.0e-254 881.7 568 79.4
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 3.9e-254 881.3 529 83.4
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 5.1e-254 880.9 563 79.6
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 8.7e-254 880.2 569 79.4
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.1e-253 879.8 580 77.6
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.1e-253 879.8 531 84.2
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 2.5e-253 878.6 550 81.3
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.7e-253 877.5 566 80.2
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 9.6e-253 876.7 555 80.2
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 9.6e-253 876.7 561 79.0
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.6e-252 875.9 557 80.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.8e-252 875.2 533 83.3
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-252 874.8 577 78.5
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 6.2e-252 874.0 538 82.5
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.4e-251 872.8 540 81.3
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.4e-251 872.8 562 80.1
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.8e-251 872.5 518 84.6
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 2.4e-251 872.1 554 80.1
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 3.1e-251 871.7 525 83.2
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 4.1e-251 871.3 558 79.2
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 5.3e-251 870.9 563 79.0
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 6.9e-251 870.5 536 82.1
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 6.9e-251 870.5 572 78.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 6.9e-251 870.5 563 78.2
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 9.0e-251 870.2 541 80.6
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 9.0e-251 870.2 565 77.9
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-250 869.4 542 81.9
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.5e-250 869.4 566 78.6
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.5e-250 869.4 544 80.5
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.6e-250 868.6 574 77.5
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 3.4e-250 868.2 590 75.9
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.4e-250 868.2 532 82.3
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 7.6e-250 867.1 575 77.7
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.3e-249 866.3 541 80.6
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.2e-249 865.5 537 80.6
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.2e-249 865.5 544 80.0
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.2e-249 865.5 563 78.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.8e-249 864.8 559 79.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 5.0e-249 864.4 555 78.2
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-248 862.8 562 78.3
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.5e-248 862.1 561 78.1
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.6e-247 859.4 521 82.5
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 6.1e-247 857.4 579 76.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.0e-246 855.1 551 78.9
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.7e-246 853.6 571 77.1
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.1e-245 853.2 546 79.1
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-245 853.2 556 78.1
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 5.7e-245 850.9 576 76.2
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 6.3e-244 847.4 549 78.3
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.8e-243 845.9 526 78.9
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.5e-242 841.3 560 76.2
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.8e-241 838.2 556 75.4
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.4e-238 829.7 566 74.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.3e-238 828.9 550 75.8
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 5.1e-238 827.8 563 77.1
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.5e-237 826.2 563 74.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 9.7e-237 823.5 549 76.3
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.3e-233 813.1 558 74.7
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 4.2e-232 808.1 468 85.5
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 6.7e-230 800.8 571 71.6
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.6e-223 779.6 575 73.4
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.1e-221 773.5 513 72.7
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.2e-220 769.2 480 80.4
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.8e-219 766.1 537 70.4
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 4.5e-218 761.5 501 72.3
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.9e-218 761.1 517 74.9
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 1.5e-216 756.5 510 71.2
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.2e-212 742.7 476 78.4
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 5.9e-210 734.6 405 90.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.7e-204 716.5 451 79.8
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 2.9e-201 705.7 445 79.8
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.2e-199 700.3 567 63.7
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.7e-196 688.7 530 68.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-194 683.3 543 66.1
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.3e-190 669.5 562 61.0
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 6.4e-188 661.4 562 66.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.4e-187 660.2 470 70.0
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 4.1e-187 658.7 587 63.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 4.6e-186 655.2 530 64.2
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.0e-185 652.5 527 61.1
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 2.1e-175 619.8 549 63.2
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 9.6e-168 594.3 318 90.3
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 6.6e-161 571.6 512 59.2
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.8e-159 565.5 532 58.1
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.1e-158 564.3 356 82.9
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.2e-157 560.8 427 64.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 4.5e-157 558.9 495 59.2
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.8e-157 558.5 495 59.0
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.6e-157 558.1 494 59.7
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 2.2e-156 556.6 492 60.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.5e-138 496.1 331 73.1
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-132 477.2 492 52.6
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.0e-124 451.4 536 46.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 4.8e-111 406.0 597 44.2
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.0e-105 388.3 547 40.8
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.2e-99 366.3 437 49.0
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.0e-89 333.2 346 55.5
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 3.4e-88 330.1 440 41.6
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.2e-70 270.4 171 83.0
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.3e-67 260.0 185 67.6
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 6.8e-65 252.7 553 36.9
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.7e-61 240.7 256 51.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.8e-55 220.3 410 38.0
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 4.0e-49 200.3 129 77.5
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.2e-46 190.3 504 32.5
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.5e-43 181.0 105 81.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 3.4e-40 170.6 106 84.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 7.1e-38 162.9 117 76.9
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 2.7e-37 161.0 80 100.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 7.9e-29 132.9 102 75.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-27 128.6 91 76.9
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.3e-27 127.5 137 52.6
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-21 109.0 65 84.6
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 2.1e-21 108.2 71 81.7
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 2.5e-19 101.3 85 62.4
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 4.1e-17 94.0 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 7.6e-16 89.7 50 84.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.9e-14 85.1 53 81.1
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 2.5e-14 84.7 98 54.1
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 9.3e-14 82.8 55 78.2
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.7e-12 76.6 69 59.4
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 5.7e-11 73.6 43 83.7
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 6.3e-10 70.1 94 41.5
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 9.1e-09 66.2 74 44.6
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 7.7e-08 63.2 52 59.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.3e-07 62.4 46 63.0
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.1e-06 59.3 50 58.0


User provided reference genes

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