Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 5.8e-25 116.7 57 100.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 7.2e-15 83.2 50 78.0
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 9.3e-15 82.8 50 78.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.2e-14 82.4 50 76.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.2e-14 82.4 50 76.0
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.2e-14 82.4 50 76.0
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.2e-14 82.4 50 78.0
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.2e-14 82.4 50 76.0
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.6e-14 82.0 50 76.0
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.6e-14 82.0 50 76.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.6e-14 82.0 50 76.0
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.6e-14 82.0 50 76.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-14 81.6 47 76.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-14 81.6 47 76.6
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.1e-14 81.6 49 77.6
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.1e-14 81.6 50 76.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.7e-14 81.3 50 76.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.7e-14 81.3 50 76.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.7e-14 81.3 50 76.0
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.7e-14 81.3 50 76.0
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 2.7e-14 81.3 50 76.0
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 2.7e-14 81.3 50 76.0
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 2.7e-14 81.3 50 76.0
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.7e-14 81.3 50 76.0
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 74.0
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 74.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.6e-14 80.9 50 76.0
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.6e-14 80.5 50 76.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.6e-14 80.5 50 76.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.6e-14 80.5 50 74.0
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 4.6e-14 80.5 50 76.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 4.6e-14 80.5 50 76.0
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 4.6e-14 80.5 50 76.0
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 4.6e-14 80.5 50 76.0
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 4.6e-14 80.5 50 76.0
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 6.1e-14 80.1 50 72.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 6.1e-14 80.1 50 76.0
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 6.1e-14 80.1 50 74.0
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 6.1e-14 80.1 50 74.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 6.1e-14 80.1 50 74.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 6.1e-14 80.1 50 72.0
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 6.1e-14 80.1 49 75.5
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 6.1e-14 80.1 50 74.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.9e-14 79.7 50 74.0
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.0e-13 79.3 50 72.0
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.0e-13 79.3 50 72.0
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.0e-13 79.3 50 72.0
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.0e-13 79.3 50 70.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.0e-13 79.3 50 74.0
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.0e-13 79.3 50 76.0
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.4e-13 79.0 49 75.5
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.4e-13 79.0 50 74.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.4e-13 79.0 50 74.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.4e-13 79.0 50 74.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.4e-13 79.0 50 74.0
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.4e-13 79.0 50 74.0
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.8e-13 78.6 50 72.0
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.8e-13 78.6 50 70.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 2.3e-13 78.2 50 74.0
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 3.0e-13 77.8 50 72.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.9e-13 77.4 50 72.0
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.9e-13 77.4 50 70.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 5.1e-13 77.0 50 72.0
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 6.7e-13 76.6 50 70.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.8e-13 76.3 54 70.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 8.8e-13 76.3 50 70.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 8.8e-13 76.3 50 70.0
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 8.8e-13 76.3 50 68.0
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-12 75.9 50 68.0
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-12 75.9 50 68.0
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.5e-12 75.5 50 72.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.5e-12 74.7 50 70.0
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 2.5e-12 74.7 50 70.0
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.3e-12 73.9 56 67.9
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 7.4e-12 73.2 50 70.0
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 9.7e-12 72.8 50 70.0
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.2e-11 71.6 50 64.0
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 4.8e-11 70.5 50 66.0
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 4.8e-11 70.5 50 66.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 6.3e-11 70.1 50 58.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.4e-10 68.2 50 64.0
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.4e-10 68.2 50 64.0
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.9e-10 66.6 39 76.9
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.6e-09 64.7 50 58.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.6e-09 64.7 50 58.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.4e-09 64.3 48 60.4
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.7e-08 62.0 50 56.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.7e-08 62.0 51 60.8
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.2e-08 61.6 51 60.8
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 5.0e-08 60.5 51 56.9
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 8.5e-08 59.7 36 83.3
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.1e-07 59.3 49 55.1
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 7.2e-07 56.6 49 55.1


User provided reference genes

Program Settings