Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 0.0e+00 1774.6 888 100.0
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 0.0e+00 1740.3 888 98.4
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 0.0e+00 1700.6 888 96.6
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 0.0e+00 1695.6 888 96.4
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 0.0e+00 1524.2 897 86.5
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 0.0e+00 1444.1 897 82.1
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 0.0e+00 1436.4 897 81.8
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 0.0e+00 1410.2 896 81.0
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 0.0e+00 1378.2 897 78.7
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 0.0e+00 1263.1 889 73.9
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 0.0e+00 1122.5 911 65.1
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 3.7e-251 872.1 545 80.9
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 2.8e-238 829.3 917 49.6
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 1.2e-236 823.9 923 48.5
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 3.4e-236 822.4 933 49.7
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 4.9e-235 818.5 913 49.6
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 6.1e-230 801.6 934 48.0
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 4.4e-228 795.4 910 47.8
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 4.9e-227 792.0 934 47.6
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 2.4e-226 789.6 909 47.3
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.9e-223 780.0 897 48.9
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 3.3e-223 779.2 902 48.4
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 3.3e-223 779.2 913 47.1
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 3.3e-223 779.2 921 47.4
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 4.4e-220 768.8 904 47.5
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 4.9e-219 765.4 908 47.4
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 6.4e-219 765.0 904 47.8
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 2.4e-218 763.1 915 47.0
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 2.0e-217 760.0 897 47.4
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.1e-215 754.2 904 46.9
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 7.3e-215 751.5 1115 42.2
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 2.8e-214 749.6 1113 40.7
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 4.0e-213 745.7 899 46.6
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 2.0e-212 743.4 900 47.4
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 3.7e-211 739.2 921 45.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 2.1e-209 733.4 919 45.0
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 2.4e-202 709.9 869 48.0
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 4.6e-201 705.7 898 45.1
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 1.0e-200 704.5 903 44.5
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 2.5e-199 699.9 895 44.6
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 7.3e-199 698.4 901 44.5
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 9.6e-199 698.0 903 43.7
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.6e-198 697.2 907 44.3
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 4.7e-198 695.7 905 43.5
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 2.4e-197 693.3 1116 39.4
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 2.0e-196 690.3 1103 39.9
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 4.4e-196 689.1 828 47.0
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 4.4e-196 689.1 904 44.0
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 9.9e-196 688.0 914 43.8
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 3.8e-195 686.0 893 44.1
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 4.9e-195 685.6 906 43.2
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 4.9e-195 685.6 896 45.1
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.1e-194 684.5 886 43.5
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 4.6e-193 679.1 1120 39.6
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.1e-191 674.5 912 42.9
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 1.5e-191 674.1 900 43.2
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 3.3e-191 672.9 909 43.7
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 5.6e-191 672.2 907 43.1
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 4.8e-190 669.1 901 43.1
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 3.1e-189 666.4 919 41.7
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 1.3e-187 661.0 929 41.3
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 1.4e-186 657.5 919 41.7
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 9.3e-186 654.8 904 41.2
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.8e-181 640.6 910 43.1
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 2.9e-179 633.3 1102 36.8
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 3.2e-178 629.8 891 41.9
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 8.2e-174 615.1 847 42.4
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 2.7e-169 600.1 1086 36.0
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 1.0e-168 598.2 911 40.3
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.0e-168 596.7 650 49.8
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 5.1e-168 595.9 898 41.1
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.1e-167 594.7 893 40.8
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.5e-167 593.6 905 40.0
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 4.8e-166 589.3 805 41.5
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.4e-165 587.0 919 40.3
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.1e-165 586.3 902 40.4
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.2e-164 584.7 633 49.4
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 5.0e-163 579.3 809 41.8
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.7e-161 573.5 903 39.9
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.3e-160 571.2 857 40.1
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 5.1e-160 569.3 1062 36.2
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 3.3e-159 566.6 293 96.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 7.4e-159 565.5 802 41.0
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.7e-158 564.3 922 38.2
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 9.1e-157 558.5 810 40.5
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.0e-155 555.1 967 36.5
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 8.5e-155 552.0 1061 35.5
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 3.2e-154 550.1 700 45.7
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 2.9e-147 526.9 1128 32.4
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 6.7e-144 515.8 775 39.7
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.8e-142 510.4 857 38.7
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.5e-135 488.0 1019 33.3
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 3.8e-131 473.4 956 33.7
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.6e-129 468.0 517 49.3
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 2.7e-129 467.2 482 51.7
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 6.8e-128 462.6 668 41.6
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.0e-119 434.5 901 33.6
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 2.4e-117 427.6 963 32.6
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 7.8e-116 422.5 949 31.8
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 4.0e-112 410.2 579 40.8
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.7e-110 403.7 606 39.4
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 5.6e-106 389.8 605 40.5
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 4.7e-105 386.7 506 42.3
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.1e-104 385.6 211 91.5
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 3.7e-102 377.1 558 40.5
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.1e-98 365.5 943 29.9
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 4.3e-98 363.6 1196 28.0
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.7e-91 341.7 732 32.9
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 3.3e-90 337.4 447 42.7
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.8e-84 316.2 388 47.9
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 9.0e-80 302.8 474 39.7
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 6.0e-68 263.5 371 41.8
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 7.9e-68 263.1 917 26.4
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 3.3e-66 257.7 678 30.5
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 6.9e-64 250.0 375 40.3
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.0e-54 219.5 209 53.6
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 8.4e-54 216.5 419 35.1
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.4e-53 215.7 373 35.7
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 7.1e-53 213.4 207 54.6
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 4.6e-52 210.7 109 95.4
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.8e-48 198.7 155 60.0
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.9e-47 193.7 215 48.8
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.0e-46 190.7 289 39.1
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.8e-43 182.2 274 40.1
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 9.7e-42 176.4 201 46.8
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.7e-38 165.6 195 44.6
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 3.3e-34 151.4 346 31.5
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 7.2e-29 133.7 759 23.7
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 7.5e-18 97.1 85 60.0
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.8e-17 95.1 214 29.4
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.1e-16 93.2 82 50.0
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 5.3e-16 90.9 79 50.6
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 9.1e-16 90.1 168 37.5
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 8.0e-12 77.0 159 34.0
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 8.8e-11 73.6 140 40.0
MD10G1174900 Malus domestica HOM05D006183 ORTHO05D007844 1.7e-06 59.3 169 29.6
Lsat_1_v5_gn_5_180141 Lactuca sativa HOM05D006183 ORTHO05D007844 8.6e-06 57.0 159 32.1


User provided reference genes

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