Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p12770 Brassica napus HOM05D003281 ORTHO05D004128 2.2e-114 415.6 204 100.0
BcaC06g36709 Brassica carinata HOM05D000169 ORTHO05D014492 8.5e-34 147.9 135 60.0
BolC7t40524H Brassica oleracea HOM05D000169 ORTHO05D014492 1.1e-33 147.5 136 59.6
C07p00850 Brassica napus HOM05D000169 ORTHO05D014492 1.8e-31 140.2 69 92.8
A06p28210 Brassica napus HOM05D001413 ORTHO05D001385 4.4e-22 109.0 71 78.9
BraA06t25765Z Brassica rapa HOM05D003281 ORTHO05D014492 4.4e-22 109.0 71 78.9
BcaC02g11585 Brassica carinata HOM05D003281 ORTHO05D004128 5.7e-14 82.0 49 77.6
BcaB02g09485 Brassica carinata HOM05D003281 ORTHO05D004128 7.5e-14 81.6 42 85.7
CARHR129210 Cardamine hirsuta HOM05D003281 ORTHO05D004128 7.5e-14 81.6 42 85.7
Thhalv10016407m.g Eutrema salsugineum HOM05D003281 ORTHO05D004128 7.5e-14 81.6 42 85.7
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 2.2e-13 80.1 41 85.4
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 2.2e-13 80.1 41 85.4
THA.LOC104798558 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 2.2e-13 80.1 42 83.3
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.7e-13 79.3 37 94.6
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 3.7e-13 79.3 37 94.6
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 3.7e-13 79.3 37 94.6
AL4G31070 Arabidopsis lyrata HOM05D003281 ORTHO05D004128 4.8e-13 79.0 86 51.2
AT2G35040 Arabidopsis thaliana HOM05D003281 ORTHO05D004128 4.8e-13 79.0 86 51.2
Carub.0004s1674 Capsella rubella HOM05D003281 ORTHO05D004128 4.8e-13 79.0 86 51.2
THA.LOC104814352 Tarenaya hassleriana HOM05D003281 ORTHO05D004128 8.2e-13 78.2 42 81.0
Ah.01g022040 Amaranthus hybridus HOM05D003281 ORTHO05D004128 1.1e-12 77.8 42 78.6
COL.COLO4_17637 Corchorus olitorius HOM05D003281 ORTHO05D004128 1.1e-12 77.8 42 81.0
Gohir.D12G047400 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.1e-12 77.8 42 81.0
Nn7g38195 Nelumbo nucifera HOM05D003281 ORTHO05D004128 1.1e-12 77.8 42 81.0
Thecc.02G006200 Theobroma cacao HOM05D003281 ORTHO05D004128 1.1e-12 77.8 42 81.0
Atru.chr10.431 Acer truncatum HOM05D003281 ORTHO05D004128 1.4e-12 77.4 57 64.9
BcaB06g29137 Brassica carinata HOM05D003281 ORTHO05D014492 2.4e-12 76.6 62 62.9
Gorai.008G050100 Gossypium raimondii HOM05D003281 ORTHO05D004128 2.4e-12 76.6 42 78.6
BcaC02g07361 Brassica carinata HOM05D000169 ORTHO05D014492 3.1e-12 76.3 41 87.8
C04p67860 Brassica napus HOM05D000169 ORTHO05D014492 3.1e-12 76.3 41 87.8
BolC4t28291H Brassica oleracea HOM05D000169 ORTHO05D014492 3.1e-12 76.3 41 87.8
Cpa.g.c33226 Carica papaya HOM05D003281 ORTHO05D004128 3.1e-12 76.3 42 78.6
Haze_06128 Corylus avellana HOM05D003281 ORTHO05D004128 3.1e-12 76.3 42 78.6
Gohir.A01G124000 Gossypium hirsutum HOM05D003281 ORTHO05D004128 3.1e-12 76.3 42 78.6
Gohir.A12G048600 Gossypium hirsutum HOM05D003281 ORTHO05D004128 3.1e-12 76.3 42 78.6
CANSAT56G2301 Cannabis sativa HOM05D003281 ORTHO05D004128 4.1e-12 75.9 42 78.6
CANSAT56G3182 Cannabis sativa HOM05D003281 ORTHO05D004128 4.1e-12 75.9 42 78.6
Duzib248G1352 Durio zibethinus HOM05D003281 ORTHO05D004128 4.1e-12 75.9 42 78.6
CiPaw.10G062800 Carya illinoinensis HOM05D003281 ORTHO05D004128 7.0e-12 75.1 42 76.2
VMungo1080G1879 Vigna mungo HOM05D003281 ORTHO05D004128 7.0e-12 75.1 42 76.2
Ciclev10014669m.g Citrus clementina HOM05D003281 ORTHO05D004128 9.1e-12 74.7 42 76.2
Eucgr.A00708 Eucalyptus grandis HOM05D003281 ORTHO05D004128 9.1e-12 74.7 42 76.2
Os08g0206600 Oryza sativa ssp. japonica HOM05D003281 ORTHO05D004128 9.1e-12 74.7 43 72.1
Phvul.005G018700 Phaseolus vulgaris HOM05D003281 ORTHO05D004128 9.1e-12 74.7 64 56.2
Actinidia11434 Actinidia chinensis HOM05D003281 ORTHO05D004128 1.2e-11 74.3 42 76.2
Ca_18076_v3 Cicer arietinum L. HOM05D003281 ORTHO05D004128 1.2e-11 74.3 62 59.7
RcHm_v2.0_Chr2g0124681 Rosa chinensis HOM05D003281 ORTHO05D004128 1.2e-11 74.3 42 76.2
TAR626G1141 Trochodendron aralioides HOM05D003281 ORTHO05D004128 1.2e-11 74.3 42 76.2
Cpa.g.sc30.140 Carica papaya HOM05D003281 ORTHO05D004128 1.6e-11 73.9 37 86.5
DCAR_001294 Daucus carota HOM05D003281 ORTHO05D004128 1.6e-11 73.9 42 76.2
Gohir.D01G111800 Gossypium hirsutum HOM05D003281 ORTHO05D004128 1.6e-11 73.9 42 76.2
Hma1.2p1_0181F.1_g079910 Hydrangea macrophylla HOM05D003281 ORTHO05D004128 1.6e-11 73.9 42 73.8
MD12G1033700 Malus domestica HOM05D003281 ORTHO05D004128 1.6e-11 73.9 42 73.8
Manes.08G044300 Manihot esculenta HOM05D003281 ORTHO05D004128 1.6e-11 73.9 42 76.2
Prupe.5G007600 Prunus persica HOM05D003281 ORTHO05D004128 1.6e-11 73.9 42 73.8
TWI34G0807 Tripterygium wilfordii HOM05D003281 ORTHO05D004128 1.6e-11 73.9 42 73.8
arahy.Tifrunner.gnm1.ann1.D0LQY1 Arachis hypogaea HOM05D003281 ORTHO05D004128 2.0e-11 73.6 62 59.7
arahy.Tifrunner.gnm1.ann1.F6IBWZ Arachis hypogaea HOM05D003281 ORTHO05D004128 2.0e-11 73.6 62 59.7
AUR62022320 Chenopodium quinoa HOM05D003281 ORTHO05D004128 2.0e-11 73.6 42 76.2
Lalb_Chr07g0189731 Lupinus albus HOM05D003281 ORTHO05D004128 2.0e-11 73.6 62 59.7
MBI14_g44727_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 2.0e-11 73.6 42 73.8
SalBow1G2706 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.0e-11 73.6 42 76.2
SalBow1G7114 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.0e-11 73.6 42 76.2
SalBow3G0238 Salvia bowleyana HOM05D003281 ORTHO05D004128 2.0e-11 73.6 42 76.2
Hund10057 Selenicereus undatus HOM05D003281 ORTHO05D004128 2.0e-11 73.6 42 76.2
GSVIVG01012120001 Vitis vinifera HOM05D003281 ORTHO05D004128 2.0e-11 73.6 42 78.6
Dinv18011 Davidia involucrata HOM05D003281 ORTHO05D004128 2.7e-11 73.2 42 73.8
Migut.B00724 Erythranthe guttata HOM05D003281 ORTHO05D004128 2.7e-11 73.2 42 71.4
Glyma.11G158400 Glycine max HOM05D003281 ORTHO05D004128 2.7e-11 73.2 62 59.7
Medtr3g013710 Medicago truncatula HOM05D003281 ORTHO05D004128 2.7e-11 73.2 62 59.7
TPR.G29009 Trifolium pratense HOM05D003281 ORTHO05D004128 2.7e-11 73.2 42 73.8
MSTRG.16470 Avicennia marina HOM05D003281 ORTHO05D004128 3.5e-11 72.8 42 73.8
Eucgr.A00733 Eucalyptus grandis HOM05D003281 ORTHO05D004128 3.5e-11 72.8 42 73.8
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 3.5e-11 72.8 42 73.8
AUR62015011 Chenopodium quinoa HOM05D003281 ORTHO05D004128 4.5e-11 72.4 42 73.8
MBI14_g40671_MAGBIO Magnolia biondii HOM05D003281 ORTHO05D004128 4.5e-11 72.4 42 73.8
Potri.010G114400 Populus trichocarpa HOM05D003281 ORTHO05D004128 4.5e-11 72.4 42 73.8
Zm00001eb413740 Zea mays HOM05D003281 ORTHO05D004128 4.5e-11 72.4 42 73.8
Aqoxy5G04041 Aquilegia oxysepala HOM05D003281 ORTHO05D004128 5.9e-11 72.0 42 73.8
AUR62034379 Chenopodium quinoa HOM05D003281 ORTHO05D004128 5.9e-11 72.0 42 71.4
Glyma.04G133100 Glycine max HOM05D003281 ORTHO05D004128 5.9e-11 72.0 62 58.1
Duzib132G1085 Durio zibethinus HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 76.2
FvH4_1g24580 Fragaria vesca HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 73.8
FvH4_7g04800 Fragaria vesca HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 73.8
FAN06G1854 Fragaria x ananassa HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 73.8
FAN06G3868 Fragaria x ananassa HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 73.8
FAN19G0112 Fragaria x ananassa HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 73.8
FAN20G2649 Fragaria x ananassa HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 73.8
FAN23G2047 Fragaria x ananassa HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 73.8
FAN26G3221 Fragaria x ananassa HOM05D003281 ORTHO05D004128 7.7e-11 71.6 42 73.8
Gorai.002G136700 Gossypium raimondii HOM05D003281 ORTHO05D004128 7.7e-11 71.6 37 83.8
Lj2A344T44 Lonicera japonica HOM05D003281 ORTHO05D004128 7.7e-11 71.6 43 72.1
Lj3g0002589 Lotus japonicus HOM05D003281 ORTHO05D004128 7.7e-11 71.6 62 58.1
Medtr5g095820 Medicago truncatula HOM05D003281 ORTHO05D004128 7.7e-11 71.6 62 58.1
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 7.7e-11 71.6 37 83.8
TPR.G1398 Trifolium pratense HOM05D003281 ORTHO05D004128 7.7e-11 71.6 62 58.1
Dinv01965 Davidia involucrata HOM05D003281 ORTHO05D004128 1.0e-10 71.2 42 73.8
Rhsim01G0054700 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.0e-10 71.2 42 73.8
Zm00001eb070920 Zea mays HOM05D003281 ORTHO05D004128 1.0e-10 71.2 42 71.4
BcaB06g28811 Brassica carinata HOM05D003281 ORTHO05D004128 1.3e-10 70.9 47 70.2
A04p28850 Brassica napus HOM05D003281 ORTHO05D004128 1.3e-10 70.9 35 85.7
BraA09t41745Z Brassica rapa HOM05D003281 ORTHO05D004128 1.3e-10 70.9 35 85.7
Psat5g222920 Pisum sativum HOM05D003281 ORTHO05D004128 1.3e-10 70.9 42 71.4
PGR004G1969 Punica granatum HOM05D003281 ORTHO05D004128 1.3e-10 70.9 42 73.8
Sed0004438 Sechium edule HOM05D003281 ORTHO05D004128 1.3e-10 70.9 60 55.0
C06p12120 Brassica napus HOM05D000169 ORTHO05D014492 1.7e-10 70.5 114 42.1
Cfa000681 Carpinus fangiana HOM05D003281 ORTHO05D004128 1.7e-10 70.5 42 73.8
CDE06G0368 Ceratophyllum demersum HOM05D003281 ORTHO05D004128 1.7e-10 70.5 42 73.8
ClCG03G004230 Citrullus lanatus HOM05D003281 ORTHO05D004128 1.7e-10 70.5 42 71.4
CAN.G514.6 Capsicum annuum HOM05D003281 ORTHO05D004128 2.2e-10 70.1 42 73.8
Nitab4.5_0000443g0070 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.2e-10 70.1 42 71.4
Nitab4.5_0006246g0040 Nicotiana tabacum HOM05D003281 ORTHO05D004128 2.2e-10 70.1 42 71.4
PSO017G0093 Papaver somniferum HOM05D003281 ORTHO05D004128 2.2e-10 70.1 43 65.1
PSO675G6428 Papaver somniferum HOM05D003281 ORTHO05D004128 2.2e-10 70.1 43 65.1
Psat5g186600 Pisum sativum HOM05D003281 ORTHO05D004128 2.2e-10 70.1 42 71.4
Solyc08g075160.3 Solanum lycopersicum HOM05D003281 ORTHO05D004128 2.2e-10 70.1 42 73.8
Sopen08g023790 Solanum pennellii HOM05D003281 ORTHO05D004128 2.2e-10 70.1 42 73.8
PGSC0003DMG400020817 Solanum tuberosum HOM05D003281 ORTHO05D004128 2.2e-10 70.1 42 73.8
Cc02_g28610 Coffea canephora HOM05D003281 ORTHO05D004128 2.9e-10 69.7 42 71.4
MELO3C002406.2 Cucumis melo HOM05D003281 ORTHO05D004128 2.9e-10 69.7 42 71.4
CsaV3_1G010170 Cucumis sativus L. HOM05D003281 ORTHO05D004128 2.9e-10 69.7 42 71.4
CSS0018694 Camellia sinensis var. sinensis HOM05D003281 ORTHO05D004128 3.8e-10 69.3 42 71.4
RcHm_v2.0_Chr1g0326741 Rosa chinensis HOM05D003281 ORTHO05D004128 3.8e-10 69.3 43 74.4
SGA_v2.0_scaffold254G45247 Striga asiatica HOM05D003281 ORTHO05D004128 3.8e-10 69.3 62 54.8
EL10Ac1g01734 Beta vulgaris HOM05D003281 ORTHO05D004128 5.0e-10 68.9 58 55.2
SGA_v2.0_scaffold202G41492 Striga asiatica HOM05D003281 ORTHO05D004128 5.0e-10 68.9 42 71.4
HPP92_009463 Vanilla planifolia HOM05D003281 ORTHO05D004128 5.0e-10 68.9 42 73.8
FAN15G0156 Fragaria x ananassa HOM05D003281 ORTHO05D004128 6.5e-10 68.6 42 71.4
QL11p013631 Quercus lobata HOM05D003281 ORTHO05D004128 6.5e-10 68.6 42 69.0
Cc02_g09680 Coffea canephora HOM05D003281 ORTHO05D004128 8.5e-10 68.2 42 69.0
ECA232G1899 Erigeron canadensis HOM05D003281 ORTHO05D004128 1.1e-09 67.8 57 54.4
Lsat_1_v5_gn_4_97540 Lactuca sativa HOM05D003281 ORTHO05D004128 1.1e-09 67.8 43 65.1
A09p44800 Brassica napus HOM05D003281 ORTHO05D014492 1.5e-09 67.4 33 90.9
FAN01G0101 Fragaria x ananassa HOM05D003281 ORTHO05D004128 1.5e-09 67.4 42 69.0
unitig_46.g18375 Utricularia gibba HOM05D003281 ORTHO05D004128 1.5e-09 67.4 37 81.1
unitig_48.g30290 Utricularia gibba HOM05D003281 ORTHO05D004128 1.5e-09 67.4 37 81.1
vmacro14666 Vaccinium macrocarpon HOM05D003281 ORTHO05D004128 1.5e-09 67.4 39 74.4
ATR0150G008 Amborella trichopoda HOM05D003281 ORTHO05D004128 2.5e-09 66.6 42 71.4
Pp3c4_1350 Physcomitrium patens HOM05D003281 ORTHO05D004128 2.5e-09 66.6 42 66.7
Sc26g0004530 Simmondsia chinensis HOM05D003281 ORTHO05D004128 2.5e-09 66.6 42 69.0
Peaxi162Scf00199g00516 Petunia axillaris HOM05D003281 ORTHO05D004128 5.5e-09 65.5 37 78.4
AagrBONN_evm.TU.Sc2ySwM_368.3406 Anthoceros agrestis HOM05D003281 ORTHO05D004128 7.2e-09 65.1 42 64.3
Pp3c12_24590 Physcomitrium patens HOM05D003281 ORTHO05D004128 7.2e-09 65.1 42 64.3
SMO228G0099 Selaginella moellendorffii HOM05D003281 ORTHO05D004128 7.2e-09 65.1 43 62.8
Mapoly0032s0021 Marchantia polymorpha HOM05D003281 ORTHO05D004128 9.4e-09 64.7 42 64.3
HanXRQChr13g0406911 Helianthus annuus HOM05D003281 ORTHO05D004128 1.6e-08 63.9 57 50.9
Rhsim04G0089200 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.7e-08 63.2 40 70.0
Rhsim04G0089900 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.7e-08 63.2 40 70.0
Rhsim04G0092800 Rhododendron simsii HOM05D003281 ORTHO05D004128 2.7e-08 63.2 40 70.0
EL10Ac5g10906 Beta vulgaris HOM05D003281 ORTHO05D004128 3.6e-08 62.8 39 66.7
Cc01_g05380 Coffea canephora HOM05D003281 ORTHO05D004128 3.6e-08 62.8 57 52.6
SEGI_14905 Sequoiadendron giganteum HOM05D003281 ORTHO05D004128 6.1e-08 62.0 42 61.9
CBR_g50928 Chara braunii HOM05D003281 ORTHO05D004128 1.0e-07 61.2 57 50.9
Duzib248G0655 Durio zibethinus HOM05D003281 ORTHO05D004128 1.0e-07 61.2 41 65.9
Rhsim04G0114800 Rhododendron simsii HOM05D003281 ORTHO05D004128 1.0e-07 61.2 40 65.0
MCO04G009 Micromonas commoda HOM05D003281 ORTHO05D004128 5.2e-07 58.9 42 59.5
Cre12.g537581 Chlamydomonas reinhardtii HOM05D003281 ORTHO05D004128 8.8e-07 58.2 97 35.1
A04p14840 Brassica napus HOM05D001227 ORTHO05D033289 2.0e-06 57.0 39 74.4
BraA04t17122Z Brassica rapa HOM05D001227 ORTHO05D033289 2.0e-06 57.0 39 74.4
SHI29162 Sapria himalayana HOM05D003281 ORTHO05D004128 2.0e-06 57.0 39 61.5
BcaC09g50395 Brassica carinata HOM05D000076 ORTHO05D006089 9.8e-06 54.7 33 84.8
BcaNung00164 Brassica carinata HOM05D000076 ORTHO05D006089 9.8e-06 54.7 33 84.8
A01p20820 Brassica napus HOM05D000062 ORTHO05D006089 9.8e-06 54.7 33 84.8
A04p18890 Brassica napus HOM05D001227 ORTHO05D033289 9.8e-06 54.7 70 50.0
C01p25980 Brassica napus HOM05D000062 ORTHO05D006089 9.8e-06 54.7 33 84.8
BolC1t02543H Brassica oleracea HOM05D000062 ORTHO05D006089 9.8e-06 54.7 33 84.8


User provided reference genes

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