Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 2.7e-251 871.7 494 100.0
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.3e-216 756.5 437 99.1
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.3e-216 756.5 437 98.9
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 6.9e-215 750.7 438 98.6
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 2.2e-208 729.2 437 86.5
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 9.1e-207 723.8 438 95.4
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.9e-189 665.6 438 87.4
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 5.0e-189 664.8 438 87.2
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 2.5e-188 662.5 455 85.3
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 7.2e-188 661.0 438 87.2
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 5.9e-182 641.3 436 85.3
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 2.1e-163 579.7 438 79.0
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 4.0e-154 548.9 438 74.0
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 1.1e-138 497.7 429 58.7
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 5.8e-137 491.9 431 57.8
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 9.9e-137 491.1 431 57.8
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 6.0e-134 481.9 441 56.9
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.0e-133 481.1 433 56.1
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.3e-133 479.9 431 66.1
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 3.0e-133 479.6 428 56.5
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 5.1e-133 478.8 429 57.8
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.3e-132 476.1 455 55.6
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.3e-132 476.1 437 57.2
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 4.7e-131 472.2 435 55.6
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.8e-130 470.3 439 53.1
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 9.0e-130 468.0 428 56.1
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 1.3e-128 464.2 436 54.8
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 1.7e-128 463.8 433 55.7
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 1.7e-128 463.8 432 63.9
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 2.2e-128 463.4 429 55.9
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 1.1e-127 461.1 431 59.9
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.1e-127 461.1 427 54.3
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 4.2e-127 459.1 427 54.3
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.2e-126 457.6 442 53.6
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.0e-125 454.5 433 61.7
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 1.3e-125 454.1 431 54.5
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 2.1e-123 446.8 444 55.4
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 3.1e-122 443.0 427 58.5
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.2e-121 441.0 429 64.3
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.2e-121 441.0 431 62.2
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 2.6e-121 439.9 433 55.7
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 4.5e-121 439.1 433 61.9
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.7e-120 437.2 433 61.2
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 3.8e-120 436.0 463 51.6
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 6.4e-120 435.3 432 52.8
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 8.4e-120 434.9 436 56.7
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 8.4e-120 434.9 438 56.4
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.1e-119 434.5 428 57.0
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 1.9e-119 433.7 439 61.0
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 2.4e-119 433.3 434 52.1
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 9.3e-119 431.4 432 54.9
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 3.5e-118 429.5 439 54.2
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.1e-117 425.6 438 55.5
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 8.7e-117 424.9 434 51.6
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 9.6e-116 421.4 438 52.5
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.3e-115 421.0 434 54.4
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 4.8e-115 419.1 430 62.1
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.1e-114 417.9 441 53.1
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.4e-114 416.8 431 59.9
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 2.4e-114 416.8 428 54.0
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 1.2e-113 414.5 492 46.1
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.2e-113 414.5 427 61.4
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 1.5e-113 414.1 425 55.1
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 2.6e-113 413.3 431 59.4
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 2.2e-112 410.2 438 48.9
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.4e-111 407.5 421 56.8
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 5.5e-111 405.6 440 50.9
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 3.5e-110 402.9 424 60.6
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 2.3e-109 400.2 429 56.4
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.0e-109 399.8 427 60.0
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.9e-108 397.1 429 52.2
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 3.3e-108 396.4 417 51.8
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 5.6e-108 395.6 414 58.5
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 7.4e-108 395.2 427 59.3
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.1e-107 393.7 426 52.8
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 1.1e-106 391.3 432 50.7
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.4e-106 391.0 432 49.5
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.2e-105 387.9 448 54.0
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 1.2e-105 387.9 411 59.4
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 2.0e-105 387.1 414 50.0
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 4.5e-105 386.0 427 49.6
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 7.6e-105 385.2 431 58.0
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 2.2e-104 383.6 426 49.3
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 6.5e-104 382.1 435 57.2
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.4e-103 380.9 425 57.4
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 3.5e-102 376.3 411 48.7
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 1.8e-101 374.0 373 60.9
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 1.6e-99 367.5 287 62.0
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 5.3e-98 362.5 437 46.7
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 1.2e-97 361.3 434 55.3
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 1.7e-96 357.5 353 53.0
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 1.4e-93 347.8 323 61.3
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 2.3e-93 347.1 341 51.3
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 5.1e-93 345.9 442 54.1
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 5.7e-92 342.4 288 55.9
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 7.4e-92 342.0 359 53.2
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.8e-82 310.8 311 54.0
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.7e-80 304.3 299 69.2
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 6.5e-80 302.4 248 58.9
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.9e-72 276.9 276 52.2
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 2.3e-69 267.3 271 60.5
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 4.8e-67 259.6 325 43.7
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.1e-66 258.5 217 62.2
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.4e-61 241.5 326 45.1
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.0e-53 215.3 402 41.5
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 4.4e-52 209.9 404 41.1
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 2.4e-50 204.1 399 33.8
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 8.6e-48 195.7 392 40.6
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 8.0e-46 189.1 159 57.9
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 6.8e-45 186.0 111 85.6
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 1.7e-40 171.4 399 37.3
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 1.1e-39 168.7 405 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 3.3e-39 167.2 406 37.4
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 4.0e-37 160.2 269 36.8
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.9e-35 154.1 159 52.2
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 7.8e-33 146.0 209 43.5
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 3.0e-32 144.1 111 61.3
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.1e-30 137.9 215 46.0
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 3.6e-30 137.1 98 63.3
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 8.1e-30 136.0 118 55.9
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 7.5e-28 129.4 214 36.9
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 1.6e-25 121.7 146 45.2
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 6.0e-25 119.8 109 54.1
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 8.6e-24 115.9 104 55.8
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 4.7e-22 110.2 131 45.8
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 6.8e-21 106.3 78 61.5
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.7e-16 91.7 193 34.2
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 2.4e-13 81.3 55 65.5
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 3.4e-12 77.4 65 53.8
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.3e-11 75.5 66 54.5
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.3e-08 65.5 66 53.0
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 3.0e-08 64.3 41 70.7
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 3.3e-07 60.8 50 56.0
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 9.6e-07 59.3 41 63.4
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 1.6e-06 58.5 38 68.4
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 8.1e-06 56.2 38 65.8


User provided reference genes

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