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Tetranychus urticae


Gene ID
tetur15g03220
Locus
tetur15g03220
Functional Description
Low density lipoprotein-receptor; class A (cysteine-rich) repeat
Gene Type
protein-coding gene
Contig
scaffold_15
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR02g15250
Definition
Low density lipoprotein-receptor; class A (cysteine-rich) repeat
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
protein binding

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
IPR002172 Low-density lipoprotein (LDL) receptor class A repeat InterPro
PTHR10529:SF242 n/a PANTHER
TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. TMHMM
PTHR10529 n/a PANTHER
SIGNAL_PEPTIDE Signal peptide region Phobius
SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. Phobius
SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. Phobius
CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. Phobius
NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region Phobius
SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. Phobius
TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. Phobius

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015788548.1 PREDICTED: low-density lipoprotein receptor-like [Tetranychus urticae]
Evalue: 0.0 | Bitscore: 602
Identities = 293/293 (100%), Positives = 293/293 (100%), Gaps = 0/293 (0%)
NCBI
Show Blast
XP_013401810.1 PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Lingula anatina]
Evalue: 1e-16 | Bitscore: 91
Identities = 64/195 (33%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
NCBI
Show Blast
XP_015517572.1 PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein [Neodiprion lecontei]
Evalue: 2e-16 | Bitscore: 90
Identities = 57/197 (29%), Positives = 87/197 (44%), Gaps = 32/197 (16%)
NCBI
Show Blast
XP_012538163.1 PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein isoform X21 [Monomorium pharaonis]
Evalue: 6e-16 | Bitscore: 89
Identities = 63/234 (27%), Positives = 97/234 (41%), Gaps = 54/234 (23%)
NCBI
Show Blast
XP_012138777.1 PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein isoform X18 [Megachile rotundata]
Evalue: 1e-15 | Bitscore: 88
Identities = 64/211 (30%), Positives = 88/211 (42%), Gaps = 42/211 (20%)
NCBI
Show Blast
XP_012944719.1 PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Aplysia californica]
Evalue: 1e-15 | Bitscore: 88
Identities = 60/190 (32%), Positives = 90/190 (47%), Gaps = 19/190 (10%)
NCBI
Show Blast
XP_011685083.1 PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein [Wasmannia auropunctata]
Evalue: 2e-15 | Bitscore: 87
Identities = 62/222 (28%), Positives = 99/222 (45%), Gaps = 26/222 (12%)
NCBI
Show Blast
XP_012138773.1 PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein isoform X14 [Megachile rotundata]
Evalue: 3e-15 | Bitscore: 87
Identities = 64/211 (30%), Positives = 88/211 (42%), Gaps = 42/211 (20%)
NCBI
Show Blast
XP_396216.2 PREDICTED: similar to corin isoform 1 [Apis mellif 2733
Evalue: 3e-16 | Bitscore: 81
Identities = 75/253 (30%), Positives = 107/253 (42%), Gaps = 34/253 (13%)
Insects
Show Blast
XP_396216.2 PREDICTED: similar to corin isoform 1 [Apis mellif 2733
Evalue: 3e-16 | Bitscore: 81
Identities = 75/253 (30%), Positives = 107/253 (42%), Gaps = 34/253 (13%)
Insects
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur15g03220
Redo Blast
CDS Length
918 nucleotides
CDS Sequence

Protein 

Locus ID
tetur15g03220
Redo Blast
Protein Length
306 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView | View in Artemini


EST IDCCZB13622.b1 Support ModelY More Info
EST IDJUNC00009076.lar Support ModelY More Info
EST IDJUNC00009077.lar Support ModelY More Info
EST IDJUNC00009322.nym Support ModelY More Info
EST IDJUNC00009323.nym Support ModelY More Info
EST IDJUNC00009324.nym Support ModelY More Info
EST IDJUNC00009939.emb Support ModelY More Info
EST IDJUNC00009940.emb Support ModelY More Info
EST IDJUNC00009941.emb Support ModelY More Info
EST IDJUNC00010772.ara Support ModelY More Info
EST IDJUNC00010773.ara Support ModelY More Info
EST IDJUNC00010774.ara Support ModelY More Info
EST IDCCZB13622.g1 Support ModelY More Info
EST IDJUNC00009075.lar Support ModelY More Info
EST IDJUNC00010771.ara Support ModelY More Info
 
General Comments
n/a"20160216000000