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Tetranychus urticae


Gene ID
tetur08g01870
Locus
tetur08g01870
Functional Description
PREDICTED: similar to mosaic protein LR11
Gene Type
protein-coding gene
Contig
scaffold_8
Last Modified On
19 February 2016 0h00
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
TETUR03g21290
Definition
PREDICTED: similar to mosaic protein LR11
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Read Counts 

Gene Ontology 

n/a
 

Protein Domains 

n/a
 

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
XP_015785250.1 PREDICTED: low-density lipoprotein receptor-related protein 5-like [Tetranychus urticae]
Evalue: 2e-12 | Bitscore: 69
Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
tetur08g01870
Redo Blast
CDS Length
237 nucleotides
CDS Sequence

Protein 

Locus ID
tetur08g01870
Redo Blast
Protein Length
79 aminoacids
Protein Sequence
Signal Peptide
na
Subcellular Localisation
na

Associated ESTs/cDNAs 

View in GenomeView | View in Artemini


EST IDCCZA3394.b1 Support ModelY More Info
EST IDCCZA3394.g1 Support ModelY More Info
EST IDJUNC00032246.lar Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00032247.lar Support ModelY More Info
EST IDJUNC00033109.nym Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00033110.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00033111.nym Support ModelY More Info
EST IDJUNC00034982.emb Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00038479.ara Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00038481.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00038482.ara Support ModelY More Info
EST IDCCZA3394.b1 Support ModelY More Info
EST IDCCZA3394.g1 Support ModelY More Info
EST IDJUNC00032246.lar Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00032247.lar Support ModelY More Info
EST IDJUNC00033109.nym Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00033110.nym Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00033111.nym Support ModelY More Info
EST IDJUNC00034982.emb Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00038479.ara Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDJUNC00038481.ara Support ModelN More Info
CommentEST has one or more non canonical splice site(s) EST is mapped on the opposite strand of the predicted model
EST IDJUNC00038482.ara Support ModelY More Info
EST IDJUNC00024081.adu Support ModelY More Info
EST IDJUNC00032248.lar Support ModelY More Info
EST IDJUNC00033112.nym Support ModelY More Info
EST IDJUNC00038483.ara Support ModelY More Info
 
General Comments
n/a"20160216000000