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Ostreococcus tauri


Gene ID
Ot16g00480
Locus
Ot16g00480
Functional Description
CG18271-PA (ISS)
Gene Type
protein-coding gene
Contig
chrom16
Last Modified On
09 March 2010 13h10
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
CG18271-PA (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
catalytic activity

Biological Process
n/a

Protein Domains 


Domain IDDescriptionDatabase
PTHR20208 FAMILY NOT NAMED HMMPanther

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL58047.1 GIY-YIG type nuclease (ISS) [Ostreococcus tauri]
Evalue: 3e-158 | Bitscore: 561
Identities = 303/303 (100%), Positives = 303/303 (100%), Gaps = 0/303 (0%)
NCBI
Show Blast
XP_001421690.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 1e-54 | Bitscore: 217
Identities = 135/291 (46%), Positives = 177/291 (60%), Gaps = 31/291 (10%)
NCBI
Show Blast
EAD96340.1 unknown [environmental sequence]
Evalue: 3e-49 | Bitscore: 194
Identities = 127/266 (47%), Positives = 163/266 (61%), Gaps = 16/266 (6%)
GOS
Show Blast
XP_002502748.1 predicted protein [Micromonas sp. RCC299]
Evalue: 4e-23 | Bitscore: 112
Identities = 79/254 (31%), Positives = 119/254 (46%), Gaps = 28/254 (11%)
NCBI
Show Blast
EEH54504.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 4e-15 | Bitscore: 86
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 0/92 (0%)
NCBI
Show Blast
XP_001898482.1 GIY-YIG catalytic domain containing protein [Brugia malayi] sp|A8PV03.1|SLX1_BRUMA RecName: Full=Structure-specific endonuclease subunit SLX1 homolog
Evalue: 7e-13 | Bitscore: 79
Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 45/218 (20%)
NCBI
Show Blast
A8PV03 Structure-specific endonuclease subunit SLX1 homolog OS=Brugia malayi GN=Bm1_35165 PE=3 SV=1
Evalue: 1e-13 | Bitscore: 77
Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 45/218 (20%)
SwissP
Show Blast
XP_002170246.1 PREDICTED: hypothetical protein [Hydra magnipapillata]
Evalue: 1e-11 | Bitscore: 74
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 21/234 (8%)
NCBI
Show Blast
NP_001090376.1 structure-specific endonuclease subunit slx1 [Xenopus laevis] sp|Q0IH86.1|SLX1_XENLA RecName: Full=Structure-specific endonuclease subunit slx1; AltNa
Evalue: 3e-10 | Bitscore: 70
Identities = 67/217 (30%), Positives = 92/217 (42%), Gaps = 30/217 (13%)
NCBI
Show Blast
Q0IH86 Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=giyd1 PE=2 SV=1
Evalue: 3e-11 | Bitscore: 69
Identities = 68/218 (31%), Positives = 96/218 (44%), Gaps = 32/218 (14%)
SwissP
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
OT16G00480
Redo Blast
CDS Length
912 nucleotides
CDS Sequence

Protein 

Locus ID
OT16G00480
Redo Blast
Protein Length
304 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

View in GenomeView | View in Artemini


EST IDOtEST02418 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand
EST IDOtEST03143 Support ModelN More Info
CommentEST is not matching the given gene model. EST is mapped on the opposite strand