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Ostreococcus tauri


Gene ID
Ot05g00510
Locus
Ot05g00510
Functional Description
topoisomerase 6 subunit A (ISS)
Gene Type
protein-coding gene
Contig
chrom05
Last Modified On
09 March 2010 1h35
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
topoisomerase 6 subunit A (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
chromosome

Molecular Function
1.
DNA binding

2.
catalytic activity

3.
DNA topoisomerase type II (ATP-hydrolyzing) activity

4.
ATP binding

Biological Process
1.
DNA metabolic process

2.
DNA topological change

Protein Domains 


Domain IDDescriptionDatabase
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding InterPro
IPR013049 Spo11/DNA topoisomerase VI, subunit A, N-terminal InterPro
IPR004085 DNA topoisomerase VI, subunit A InterPro
G3DSA:3.40.1360.10 no description Gene3D
IPR002815 Spo11/DNA topoisomerase VI, subunit A InterPro
IPR008162 Inorganic pyrophosphatase InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL53806.1 topoisomerase 6 subunit A (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 863
Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)
NCBI
Show Blast
XP_002507137.1 type II DNA topoisomerase VI subunit A 2 [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 665
Identities = 316/389 (81%), Positives = 351/389 (90%), Gaps = 0/389 (0%)
NCBI
Show Blast
XP_001417667.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 663
Identities = 314/339 (92%), Positives = 328/339 (96%), Gaps = 0/339 (0%)
NCBI
Show Blast
NP_195902.1 RHL2 (ROOT HAIRLESS 2); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ identical protein binding / protein
Evalue: 3e-156 | Bitscore: 555
Identities = 253/371 (68%), Positives = 319/371 (85%), Gaps = 0/371 (0%)
NCBI
Show Blast
XP_001763679.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 2e-154 | Bitscore: 549
Identities = 252/392 (64%), Positives = 322/392 (82%), Gaps = 0/392 (0%)
NCBI
Show Blast
XP_002274790.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 1e-151 | Bitscore: 540
Identities = 245/389 (62%), Positives = 321/389 (82%), Gaps = 1/389 (0%)
NCBI
Show Blast
XP_002525197.1 meiotic recombination protein spo11, putative [Ricinus communis]
Evalue: 2e-151 | Bitscore: 540
Identities = 245/365 (67%), Positives = 311/365 (85%), Gaps = 0/365 (0%)
NCBI
Show Blast
CBI32617.1 unnamed protein product [Vitis vinifera]
Evalue: 2e-151 | Bitscore: 539
Identities = 245/389 (62%), Positives = 321/389 (82%), Gaps = 1/389 (0%)
NCBI
Show Blast
AAO17008.1 Hypothetical protein [Oryza sativa Japonica Group]
Evalue: 4e-151 | Bitscore: 538
Identities = 246/361 (68%), Positives = 301/361 (83%), Gaps = 0/361 (0%)
NCBI
Show Blast
EAY89531.1 hypothetical protein OsI_11065 [Oryza sativa Indica Group]
Evalue: 5e-151 | Bitscore: 538
Identities = 246/361 (68%), Positives = 301/361 (83%), Gaps = 0/361 (0%)
NCBI
Show Blast

Gene Structure 

View in GenomeView|View in Artemini


Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
OT05G00510
Redo Blast
CDS Length
1269 nucleotides
CDS Sequence

Protein 

Locus ID
OT05G00510
Redo Blast
Protein Length
423 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

n/a