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Ostreococcus tauri


Gene ID
Ot02g06490
Locus
Ot02g06490
Functional Description
importin beta-2, putative (ISS)
Gene Type
protein-coding gene
Contig
chrom02
Last Modified On
12 July 2012 16h07
History

Annotator  

Name
Pierre Rouzé
Email
pierre.rouze@psb.ugent.be
Lab
VIB U.Gent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
importin beta-2, putative (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
1.
nucleus

2.
nuclear pore

3.
cytoplasm

Molecular Function
1.
binding

2.
protein transporter activity

Biological Process
1.
protein import into nucleus, docking

Protein Domains 


Domain IDDescriptionDatabase
IPR000357 HEAT InterPro
IPR001494 Importin-beta, N-terminal InterPro
IPR011989 Armadillo-like helical InterPro
IPR021133 HEAT, type 2 InterPro
PTHR10527 IMPORTIN BETA HMMPanther
IPR016024 Armadillo-type fold InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL52524.1 importin beta-2, putative (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1759
Identities = 859/859 (100%), Positives = 859/859 (100%), Gaps = 0/859 (0%)
NCBI
Show Blast
XP_001416317.1 predicted protein [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 1207
Identities = 610/869 (70%), Positives = 685/869 (78%), Gaps = 25/869 (2%)
NCBI
Show Blast
EEH54858.1 predicted protein [Micromonas pusilla CCMP1545]
Evalue: 0.0 | Bitscore: 870
Identities = 457/877 (52%), Positives = 598/877 (68%), Gaps = 37/877 (4%)
NCBI
Show Blast
XP_002503190.1 predicted protein [Micromonas sp. RCC299]
Evalue: 0.0 | Bitscore: 852
Identities = 449/874 (51%), Positives = 590/874 (67%), Gaps = 36/874 (4%)
NCBI
Show Blast
XP_002276600.1 PREDICTED: hypothetical protein [Vitis vinifera]
Evalue: 0.0 | Bitscore: 768
Identities = 409/879 (46%), Positives = 565/879 (64%), Gaps = 52/879 (5%)
NCBI
Show Blast
CBI23029.1 unnamed protein product [Vitis vinifera]
Evalue: 0.0 | Bitscore: 768
Identities = 412/890 (46%), Positives = 569/890 (63%), Gaps = 54/890 (6%)
NCBI
Show Blast
XP_002526256.1 importin beta-1, putative [Ricinus communis]
Evalue: 0.0 | Bitscore: 762
Identities = 403/879 (45%), Positives = 566/879 (64%), Gaps = 52/879 (5%)
NCBI
Show Blast
XP_002515853.1 importin beta-1, putative [Ricinus communis]
Evalue: 0.0 | Bitscore: 756
Identities = 402/877 (45%), Positives = 560/877 (63%), Gaps = 48/877 (5%)
NCBI
Show Blast
XP_002318437.1 predicted protein [Populus trichocarpa]
Evalue: 0.0 | Bitscore: 755
Identities = 400/872 (45%), Positives = 565/872 (64%), Gaps = 38/872 (4%)
NCBI
Show Blast
XP_001782481.1 predicted protein [Physcomitrella patens subsp. patens]
Evalue: 0.0 | Bitscore: 755
Identities = 408/877 (46%), Positives = 556/877 (63%), Gaps = 44/877 (5%)
NCBI
Show Blast

Gene Structure 

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Structure
Sequence Type
mRNA
Strand
+
Structure Quality
2

CDS  

Locus ID
OT02G06490
Redo Blast
CDS Length
2580 nucleotides
CDS Sequence

Protein 

Locus ID
OT02G06490
Redo Blast
Protein Length
860 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

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EST IDCH1_ImpB Support ModelY More Info