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Ostreococcus tauri


Gene ID
Ot02g00220
Locus
Ot02g00220
Functional Description
Animal-type fatty acid synthase and related proteins (ISS)
Gene Type
protein-coding gene
Contig
chrom02
Last Modified On
08 March 2010 20h41
History

Annotator  

Name
EuGene Automatic Prediction
Email
beg-orcae@psb.ugent.be
Lab
UGent
Status
active

Gene Actions  

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Gene Function 

Short Name
n/a
Alternative Names
n/a
Definition
Animal-type fatty acid synthase and related proteins (ISS)
Additional Functional Description
n/a
Pubmed ID
n/a
EC Number
n/a
KOGid
n/a

Gene Ontology 

Cellular Component
n/a
Molecular Function
1.
oxidoreductase activity

Biological Process
1.
metabolic process

Protein Domains 


Domain IDDescriptionDatabase
IPR000794 Beta-ketoacyl synthase InterPro
IPR014031 Beta-ketoacyl synthase, C-terminal InterPro
IPR006163 Phosphopantetheine-binding InterPro
G3DSA:1.10.1200.10 no description Gene3D
IPR014030 Beta-ketoacyl synthase, N-terminal InterPro
IPR016038 Thiolase-like, subgroup InterPro
IPR016039 Thiolase-like InterPro
IPR016040 NAD(P)-binding domain InterPro
IPR009081 Acyl carrier protein-like InterPro
IPR013968 Polyketide synthase, KR InterPro

Protein Homologs 

View in Jalview


ProteinIDDescription / BlastScore DatabaseActions
CAL52001.1 polyketide synthase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 9062
Identities = 4841/4841 (100%), Positives = 4841/4841 (100%), Gaps = 0/4841 (0%)
NCBI
Show Blast
XP_001416177.1 polyketide synthase [Ostreococcus lucimarinus CCE9901]
Evalue: 0.0 | Bitscore: 2275
Identities = 1473/2543 (57%), Positives = 1725/2543 (67%), Gaps = 89/2543 (3%)
NCBI
Show Blast
CAL52003.1 polyketide synthase (ISS) [Ostreococcus tauri]
Evalue: 0.0 | Bitscore: 1598
Identities = 882/915 (96%), Positives = 893/915 (97%), Gaps = 0/915 (0%)
NCBI
Show Blast
Ot02g00240 chrom02.0001 [45740..45752,45790..46751,46787..46900,46974..47360, 47404..50102,50135..50432,50489..52933] inframe stop
Evalue: 0.0 | Bitscore: 1471
Identities = 792/903 (87%), Positives = 801/903 (88%)
Self
Show Blast
CAL57604.1 Animal-type fatty acid synthase and related proteins (ISS) [Ostreococcus tauri]
Evalue: 2e-151 | Bitscore: 543
Identities = 274/281 (97%), Positives = 276/281 (98%), Gaps = 0/281 (0%)
NCBI
Show Blast
Ot15g01850 chrom15.0001 [303592..304437] incomplete
Evalue: 1e-139 | Bitscore: 494
Identities = 274/281 (97%), Positives = 276/281 (98%)
Self
Show Blast
CAL56184.1 Animal-type fatty acid synthase and related proteins (ISS) [Ostreococcus tauri]
Evalue: 6e-132 | Bitscore: 478
Identities = 257/273 (94%), Positives = 258/273 (94%), Gaps = 12/273 (4%)
NCBI
Show Blast
Ot10g02270 chrom10.0001 [369662..372116,372155..372217,372253..372971]
Evalue: 1e-123 | Bitscore: 441
Identities = 251/273 (91%), Positives = 252/273 (92%), Gaps = 12/273 (4%)
Self
Show Blast
XP_002507643.1 modular polyketide synthase type I [Micromonas sp. RCC299]
Evalue: 1e-85 | Bitscore: 325
Identities = 311/980 (31%), Positives = 444/980 (45%), Gaps = 118/980 (12%)
NCBI
Show Blast
EAI17918.1 unknown [environmental sequence]
Evalue: 7e-86 | Bitscore: 320
Identities = 230/553 (41%), Positives = 295/553 (53%), Gaps = 57/553 (10%)
GOS
Show Blast

Gene Structure 

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Download gene in EMBL format

Structure
Sequence Type
mRNA
Strand
-
Structure Quality
2

CDS  

Locus ID
OT02G00220
Redo Blast
CDS Length
14526 nucleotides
CDS Sequence

Protein 

Locus ID
OT02G00220
Redo Blast
Protein Length
4836 aminoacids
Protein Sequence
Signal Peptide
n/a
Subcellular Localisation
n/a

Associated ESTs/cDNAs 

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EST IDCH1_PKS3 Support ModelN More Info
CommentEST is not matching the given gene model.