# This template name is tera-blastp
# Tera-BLASTP seatch amino vs amino

# The following block should not be changed by the user
-algorithm tera-blastp
-database_path %TARGETPATH%
-result_path %RESULTPATH%
-query_type aa
-query_search 1
-database_type aa
-database_frames 1

# The following block will rarely be changed by the user
-neighborhood_threshold off
-word_size 4
-extension_threshold 20
-gapped_alignment banded
-matrix %MATRIXPATH%/blosum62.maa
-open_penalty -11
-extend_penalty -1

# The following block will often be changed by the user
-filter_query n
-max_scores 500
-max_alignments 500
-significance evalue
-threshold significance=0.001
-output_format ncbi tab numbernucleic countdowncomplement nogrouping percentage fieldrecord
-field querylocus targetlocus percentalignment alignmentlength mismatches gaps querystart queryend targetstart targetend significance score targetdescription status