88888888888 B i O i n f O R m a t i C S G e n T O N l i n E 8888888888888 888 8888 8888888888888 88 88 8888 88888888888888 8888 88 8888888888 888 8888 88888888888 88 88 88 88888 888 888 88888888 88 88 88 88 88 8888 8888888888888 88 88 88 888 888 88888888 8888 888 888 88 88 88 88888 888888888888 88 88888 888 888 8888 88 88 88 88 888 888 88 888 88888888888888 88888888 88888888888 888 888 888888888888 8888888888888 8888888888 G e N o m e A N N o t a T I O n s Y s T E m ******************************************************************************** ******* ******* ******* Populus trichocarpa file download ******* ******* ******* ******************************************************************************** This readme file contains general information and descriptions of the files available for download. All files are zipped with gzip to reduce the size and thus increase download time. To unzip a gzip file use 'gunzip' on unix, on windows systems use a program like 7-zip (freeware). Some of the downloadable files are actually tar archives that contain several files (sometimes quite a lot), this is typically for embl and gff files. The most up-to-date version of the data files is always called _LATEST. No record is being kept of these files so when updates are available, the present files will be overwritten by the new ones. Embl files only contain information on the features present on a genomic scaffold (=> feature tables), they do not contain the sequence itself. ================================================================================= Files and Directories: ================================================================================= Poptr_genome_V2.tfa.gz Fasta file with the version 2 genomic sequence Poptr_CDS_LATEST.tfa.gz Fasta file with coding sequences as extracted from the BOGAS system (gene structure updates will be available in this file) Poptr_PROT_LATEST.tfa.gz The protein fasta file as extracted from the DB. gene structure updates will be available in this file) Version1/ Directory containing data files of the version 1 release RESTRICTED/ Directory with restricted access, only for authorised collaborators ================================================================================= Last Modified on: 7 June 2010 Contact: beg-bogas[at]psb.vib-ugent.be