88888888888 B i O i n f O R m a t i C S G e n T O N l i n E 8888888888888 888 8888 8888888888888 88 88 8888 88888888888888 8888 88 8888888888 888 8888 88888888888 88 88 88 88888 888 888 88888888 88 88 88 88 88 8888 8888888888888 88 88 88 888 888 88888888 8888 888 888 88 88 88 88888 888888888888 88 88888 888 888 8888 88 88 88 88 888 888 88 888 88888888888888 88888888 88888888888 888 888 888888888888 8888888888888 8888888888 G e N o m e A N N o t a T I O n s Y s T E m ******************************************************************************** ******* ******* ******* Malus domestica file download ******* ******* ******* ******************************************************************************** This readme file contains general information and descriptions of the files available for download. All files are zipped with gzip to reduce the size and thus increase download time. To unzip a gzip file use 'gunzip' on unix, on windows systems use a program like 7-zip (freeware). Some of the downloadable files are actually tar archives that contain several files (sometimes quite a lot), this is typically for embl and gff files. The most up-to-date version of the data files is always called _LATEST. No record is being kept of these files so when updates are available, the present files will be overwritten by the new ones. Embl files only contain information on the features present on a genomic scaffold (=> feature tables), they do not contain the sequence itself. ================================================================================= Files and Directories: ================================================================================= Files starting with 'apple_' are the original files as provided by IASMA. Files starting with 'Madom_' are sets derived from a first initial release from BOGAS Madom_cds_LATEST.tfa.gz CDS of the most recent version of the gene models Madom_prot_LATEST.tfa.gz Proteins of the most recent version of the gene models Madom_mRNA_LATEST.tfa.gz mRNA sequences of the most recent annotation. mRNA = CDS + UTR (UTR is only assigned based on EST evidence). Madom_embl_LATEST.tar.gz Embl-formatted file of the genome annotation Madom_gff_LATEST.tar.gz GFF formatted file of the genome annotation Madom_gff3_LATEST.tar.gz GFF3 formatted file of the genome annotation apple_genome.seq.tar.gz Fasta file of all the scaffolds in the genome assembly file apple_genome.gff3.tar.gz GFF3 formatted file of the annotation from IASMA ================================================================================= File formats: ================================================================================= ================================================================================= Last Modified on: January, 21th, 2011 contact: beg-bogas[at]psb.vib-ugent.be