Genomic sequence stats seq id seq length %GC nr contigs nr gaps Cara001_chrA_sgCC 59034463 37.72 1 0 ptg000002l 27834 37.59 1 0 Cara002_chrA_sgEE 57716770 37.02 4 3 Cara003_chrB_sgCC 76906396 36.72 2 1 ptg000003l 85510 35.86 1 0 Cara004_chrB_sgEE 77301657 36.79 4 3 Cara005_chrC_sgCC 44587295 36.86 4 3 ptg000005l 11286 37.38 1 0 ptg000006l 165930 39.90 1 0 Cara006_chrC_sgEE 49228674 36.99 4 3 Cara007_chrD_sgCC 52323663 37.30 1 0 ptg000007l 72139 38.68 1 0 Cara008_chrD_sgEE 48754064 37.09 6 5 ptg000008l 88571 42.04 1 0 ptg000009l 85180 36.04 1 0 Cara009_chrE_sgCC 49172495 37.12 4 3 Cara010_chrE_sgEE 55030746 37.42 1 0 ptg000010l 83483 37.62 1 0 ptg000011l 106409 36.38 1 0 Cara011_chrF_sgCC 63716479 37.36 8 7 Cara012_chrF_sgEE 63214365 37.14 3 2 ptg000012l 59250 35.88 1 0 Cara013_chrG_sgCC 40515400 36.85 3 2 ptg000014l 160555 36.59 1 0 Cara014_chrG_sgEE 50646195 38.55 12 11 Cara015_chrH_sgCC 46623164 36.79 4 3 ptg000015l 83150 44.32 1 0 ptg000016l 86285 39.73 1 0 Cara016_chrH_sgEE 53737150 36.91 4 3 ptg000017l 81071 39.76 1 0 Cara017_chrI_sgCC 44254144 37.40 4 3 ptg000018l 10235 44.89 1 0 Cara018_chrI_sgEE 41449412 37.34 3 2 ptg000019l 84827 40.45 1 0 Cara019_chrJ_sgCC 54177763 37.13 3 2 ptg000020l 20037 38.10 1 0 Cara020_chrJ_sgEE 48872521 37.37 6 5 ptg000021l 51748 56.88 1 0 Cara021_chrK_sgCC 45802622 37.81 10 9 Cara022_chrK_sgEE 69529632 41.93 37 36 ptg000022l 6834 37.37 1 0 ptg000023l 137395 40.43 1 0 ptg000024l 81056 56.82 1 0 ptg000025l 88264 39.80 1 0 ptg000026l 25189 45.69 1 0 ptg000027l 51392 44.03 1 0 ptg000028l 114993 34.84 1 0 ptg000029l 25971 38.03 1 0 ptg000030l 82386 35.56 1 0 ptg000031l 149956 51.65 1 0 ptg000032l 98811 36.57 1 0 ptg000033l 34951 40.61 1 0 ptg000034l 18777 44.80 1 0 ptg000035l 97437 35.62 1 0 ptg000036l 50892 35.62 1 0 ptg000037l 45501 40.58 1 0 ptg000038l 92025 40.53 1 0 ptg000039l 101479 36.72 1 0 ptg000040l 170650 36.21 1 0 ptg000042l 35175 56.65 1 0 ptg000043l 56500 40.72 1 0 ptg000044l 23128 56.97 1 0 ptg000045l 36459 44.47 1 0 ptg000046l 54609 36.89 1 0 ptg000047l 21013 37.33 1 0 ptg000048l 65727 34.38 1 0 ptg000049l 26852 42.09 1 0 ptg000050l 32264 44.93 1 0 ptg000051l 14337 45.33 1 0 ptg000053l 67567 45.15 1 0 ptg000054l 160454 35.10 1 0 ptg000055l 84315 37.15 1 0 ptg000056l 67244 37.57 1 0 ptg000057l 25458 45.69 1 0 ptg000058l 39518 45.35 1 0 ptg000059l 50354 34.76 1 0 ptg000060l 38848 42.00 1 0 ptg000061l 95218 38.83 1 0 ptg000062l 68090 36.88 1 0 ptg000063l 135785 40.63 1 0 ptg000064l 51633 34.61 1 0 ptg000065l 19557 45.89 1 0 ptg000066l 71401 37.21 1 0 ptg000067l 69457 36.49 1 0 ptg000070l 24638 35.62 1 0 ptg000071l 6964 42.39 1 0 ptg000072l 36710 45.38 1 0 ptg000073l 18858 46.66 1 0 ptg000074l 24221 45.78 1 0 ptg000075l 12882 44.88 1 0 ptg000076l 21154 44.61 1 0 ptg000077l 64073 34.11 1 0 ptg000078l 51569 34.30 1 0 ptg000080l 23531 44.97 1 0 ptg000081l 48698 43.12 1 0 ptg000082l 18336 57.49 1 0 ptg000083l 68777 35.92 1 0 ptg000084l 18692 37.82 1 0 ptg000085l 7556 36.92 1 0 ptg000086l 8604 38.27 1 0 ptg000087l 77378 38.13 1 0 ptg000089l 36398 41.97 1 0 ptg000090l 17465 45.27 1 0 ptg000091l 17172 44.96 1 0 ptg000092l 62221 34.13 1 0 ptg000094l 19583 45.68 1 0 ptg000095l 12334 45.23 1 0 ptg000096l 29992 38.46 1 0 ptg000097l 29413 35.29 1 0 ptg000098l 43474 45.39 1 0 ptg000099l 20665 45.31 1 0 ptg000100l 25916 44.15 1 0 ptg000101l 16735 45.95 1 0 ptg000103l 35727 36.99 1 0 ptg000104l 18285 45.34 1 0 ptg000105l 40427 45.47 1 0 ptg000106l 60304 36.78 1 0 ptg000107l 12746 44.47 1 0 ptg000108l 20808 45.19 1 0 ptg000109l 9122 39.54 1 0 ptg000110l 8768 40.05 1 0 ptg000111l 9360 43.57 1 0 ptg000112l 31503 45.03 1 0 ptg000114l 41413 35.91 1 0 ptg000115l 17512 45.19 1 0 ptg000116l 17800 45.76 1 0 ptg000118l 8647 56.00 1 0 ptg000119l 19051 45.17 1 0 ptg000120l 11300 41.67 1 0 ptg000121l 40430 44.93 1 0 ptg000122l 9552 44.60 1 0 ptg000123l 12784 45.73 1 0 genome size (scaffolds): 1198133040 nt genome size (contigs): 1198080104 nt largest scaffold: 77301657 nt av. scaffold lenght: 9076765.45 nt number of contigs: 238 largest contig: 59034463 nt av. contig lenght: 5033950.02 nt gaps (>50N): 106 (52936 nt) cut-off (small CDS,big intron): -1, 20000 nt Cara_r6_tgs15k_ChrNames_racon_w3kb_chrs_NoOrganelles.fa fixed_final_annotation.neat.gff nr.big_introns: 299 nr_loci (exons+introns): 69313 av.length.loci: 3571.83 nt loci density: 17285.07 nt/gene nr_genes: 69313 gene density: 57.85 genes/Mb av.length.genes: 1187.69 nt median.length.genes: 921 nt nr_exons: 347353 %GC of CDS: 44.03 cumul_exon_length: 82322679 nt av.length.exons: 237.00 nt median.length.exons: 133 nt longest.exons: 6574 nt (Cara019g010860.exon3) av.nr.exons/gene: 5.01 most exons/gene: 75 Cara015g016380.mRNA cumul_CDS_length: 82322679 nt av.length.CDS: 1187.69 nt cumul_intron_length: 211764868 nt av.length.intron: 762.50 nt median.length.introns: 448 nt longest.intron: 59701 nt (Cara001g004550.exon10-Cara001g004550.exon11) %GC of intron: 35.97 longest CDS: 16413 nt shortest CDS: 39 nt shortest,longest exon: (2 2 3 3 3 3)(6218 6218 6507 6537 6574 6574) nt shortest,longest intron: (29 29 29 29 29 29)(19648 19817 19848 19902 19918 19937) nt most occurring number of exons/gene: 1 => 13316 most occurring number of exons/gene: 2 => 12858 most occurring number of exons/gene: 3 => 9821 most occurring number of exons/gene: 4 => 7047 most occurring number of exons/gene: 5 => 5189 most occurring number of exons/gene: 6 => 3904 most occurring number of exons/gene: 7 => 3280 most occurring number of exons/gene: 8 => 2505 most occurring number of exons/gene: 9 => 2081 most occurring number of exons/gene: 10 => 1704 most occurring number of exons/gene: 11 => 1284 most occurring number of exons/gene: 12 => 1061 most occurring number of exons/gene: 13 => 975 most occurring number of exons/gene: 14 => 854 most occurring number of exons/gene: 15 => 570 most occurring number of exons/gene: 16 => 462 most occurring number of exons/gene: 17 => 317 most occurring number of exons/gene: 18 => 362 most occurring number of exons/gene: 19 => 309 most occurring number of exons/gene: 20 => 229 most occurring number of exons/gene: 21 => 178 most occurring number of exons/gene: 22 => 142 most occurring number of exons/gene: 23 => 135 most occurring number of exons/gene: 24 => 110 most occurring number of exons/gene: 25 => 89 most occurring number of exons/gene: 26 => 82 most occurring number of exons/gene: 27 => 57 most occurring number of exons/gene: 28 => 60 most occurring number of exons/gene: 29 => 40 most occurring number of exons/gene: 30 => 34 most occurring number of exons/gene: 31 => 24 most occurring number of exons/gene: 32 => 17 most occurring number of exons/gene: 33 => 20 most occurring number of exons/gene: 34 => 23 most occurring number of exons/gene: 35 => 16 most occurring number of exons/gene: 36 => 24 most occurring number of exons/gene: 37 => 13 most occurring number of exons/gene: 38 => 13 most occurring number of exons/gene: 39 => 11 most occurring number of exons/gene: 40 => 11 most occurring number of exons/gene: 41 => 8 most occurring number of exons/gene: 42 => 10 most occurring number of exons/gene: 43 => 6 most occurring number of exons/gene: 44 => 4 most occurring number of exons/gene: 45 => 5 most occurring number of exons/gene: 46 => 4 most occurring number of exons/gene: 47 => 4 most occurring number of exons/gene: 48 => 8 most occurring number of exons/gene: 49 => 3 most occurring number of exons/gene: 50 => 3 most occurring number of exons/gene: 51 => 3 most occurring number of exons/gene: 52 => 1 most occurring number of exons/gene: 53 => 3 most occurring number of exons/gene: 54 => 1 most occurring number of exons/gene: 55 => 0 most occurring number of exons/gene: 56 => 1 most occurring number of exons/gene: 57 => 1 most occurring number of exons/gene: 58 => 2 most occurring number of exons/gene: 59 => 0 most occurring number of exons/gene: 60 => 0 most occurring number of exons/gene: 61 => 2 most occurring number of exons/gene: 62 => 2 most occurring number of exons/gene: 63 => 5 most occurring number of exons/gene: 64 => 0 most occurring number of exons/gene: 65 => 1 most occurring number of exons/gene: 66 => 0 most occurring number of exons/gene: 67 => 0 most occurring number of exons/gene: 68 => 0 most occurring number of exons/gene: 69 => 0 most occurring number of exons/gene: 70 => 1 most occurring number of exons/gene: 71 => 2 most occurring number of exons/gene: 72 => 1 most occurring number of exons/gene: 73 => 2 most occurring number of exons/gene: 74 => 2 most occurring number of exons/gene: 75 => 1