{"text_format":"5","workbook":"xlsx","n_sheets":2,"sheets":["S4 index","S4A"],"props":{"creator":"donges","last_modified_by":"Rensing","company":"Philipps-Universität Marburg"},"not_rendered":{"defined_names":1},"read":"whole","wrapped":"gz","date_system":"1900"}

{"sheet":"S4 index","index":0,"n_rows":16,"n_cols":2,"rows_kept":16}
["INDEX OF SUPPLEMENTARY TABLE 4"]
[]
["C. braunii protein coding gene annotation"]
[]
["Table","Table content"]
["S4A","C. braunii protein coding gene annotation (Gene Ontology, best blast hits, trihelix TFs, expression data, overlap with TE evidence, decontamination)"]
[]
[]
["GO_term_BP","Gene Ontology term Biological Function"]
["GO_annot_BP","Gene Ontology annotation Biological Function"]
["TAIR_id","TAIR database ident number "]
["uniprot_reviewed_id","UniProt database ident number"]
["ncbi_nr_id","NCBI GenBank nr database ident number "]
["trihelix","trihelix TF annotation"]
["expression evidence","RNA-seq expression evidence data"]
["TE","Transposable Element evidence overlapping with gene model"]

{"sheet":"S4A","index":1,"n_rows":36884,"n_cols":24,"rows_kept":4500,"cut":true,"merged":[[4,13,4,19],[5,13,5,15],[5,16,5,19]],"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["C. braunii protein coding gene annotation (Gene Ontology, best blast hits, trihelix TFs, expression data, overlap with TE evidence, decontamination)"]
[]
[36878,"proteins","w/o annotation",13822,{"v":0.37,"d":"37%"},"expressed",12388,{"$f":"G3/A3","v":{"v":0.335918433754542,"d":"34%"}}]
[]
[null,"GO annotation",{"$nulls":5},"BLAST annotation\n(homology filtering Rost et al. 1999)",null,"BLAST annotation\n(homology filtering Rost et al. 1999)",null,"BLAST annotation\n(homology filtering Rost et al. 1999)",null,"expression evidence"]
[null,8996,{"$nulls":5},14327,null,17398,null,21332,null,"blast query: ALL Chara proteins",null,null,"Langdale lab RNA-seq reproduction + vegetative FPKM (>= 2 considered expressed)"]
["gene_id_chara","GO_term_BP","GO_term_MF","GO_term_CC","GO_annot_BP","GO_annot_MF","GO_annot_CC","TAIR_id","TAIR_desc","uniprot_reviewed_id","uniprot__reviewed_desc","ncbi_nr_id","trihelix","CHABC FLcDNA vegetative","trinity assembly vegetative and reproductive","COMBINED (trinity and FLcDNA)","whole plant","archegonia","antheridia","zygote","TE overlap 100%","TE overlap >= 50%","considered not protein coding","putative contamination"]
["g1.t1",{"$nulls":13},"x","x",{"v":1.75608581346444,"d":"1.76"},{"v":8.62588655191366,"d":"8.63"},{"v":3.36525060935563,"d":"3.37"},{"v":9.22478775702622,"d":"9.22"}]
["g2.t1",{"$nulls":20},"X","X"]
["g3.t1",{"$nulls":10},"gi|695022977|ref|XP_009398635.1|",null,null,"x","x",{"v":4.8828037781425,"d":"4.88"},{"v":5.33312224646109,"d":"5.33"},{"v":4.12845300050978,"d":"4.13"},{"v":6.09886039517777,"d":"6.10"}]
["g4.t1",55114,"0032542:0005524:0003677",null,"oxidation-reduction process","sulfiredoxin activity:ATP binding:DNA binding",null,"ARATHwo_AT1G31170.4","encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress","sp|Q8GY89|SRX_ARATH","Sulfiredoxin, chloroplastic/mitochondrial","gi|604345027|gb|EYU43666.1|",null,null,"x","x",{"v":7.24294502442815,"d":"7.24"},{"v":1.35743363895466,"d":"1.36"},{"v":2.13175952173185,"d":"2.13"},{"v":1.99712479713928,"d":"2.00"}]
["g4.t2",55114,"0032542:0005524:0003677",null,"oxidation-reduction process","sulfiredoxin activity:ATP binding:DNA binding",{"$nulls":5},"gi|604345027|gb|EYU43666.1|",null,null,"x","x",{"v":7.24294502442815,"d":"7.24"},{"v":1.35743363895466,"d":"1.36"},{"v":2.13175952173185,"d":"2.13"},{"v":1.99712479713928,"d":"2.00"}]
["g5.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q09575|YRD6_CAEEL","Uncharacterized protein K02A2.6","gi|661175376|emb|CDH61339.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0915804992752433,"d":"0.09"},null,"X"]
["g6.t1",{"$nulls":10},"gi|6650019|gb|AAF21678.1|AF051915_2",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.408486229236889,"d":"0.41"},{"v":0,"d":"0.00"},"X"]
["g7.t1",{"$nulls":6},"ARATHwo_AT5G57580.1","Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 341 Blast hits to 322 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|Q9FKL6|CB60B_ARATH","Calmodulin-binding protein 60 B","gi|901819523|gb|KMZ72245.1|",null,null,"x","x",{"v":31.9347888272052,"d":"31.93"},{"v":12.8456005304231,"d":"12.85"},{"v":9.1070130737963,"d":"9.11"},{"v":15.8706244044977,"d":"15.87"}]
["g7.t2",{"$nulls":10},"gi|901819523|gb|KMZ72245.1|",null,null,"x","x",{"v":31.9347888272052,"d":"31.93"},{"v":12.8456005304231,"d":"12.85"},{"v":9.1070130737963,"d":"9.11"},{"v":15.8706244044977,"d":"15.87"}]
["g8.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.07114140039357,"d":"1.07"},{"v":0,"d":"0.00"},"X",null,"X"]
["g9.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).","sp|O75132|ZBED4_HUMAN","Zinc finger BED domain-containing protein 4","gi|670417192|ref|XP_008649452.1|"]
["g10.t1",{"$nulls":15},{"v":0.0838864499367445,"d":"0.08"},{"v":0.040260596884779,"d":"0.04"},{"v":0.089009341287447,"d":"0.09"},{"v":0,"d":"0.00"}]
["g11.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":0.194498297066862,"d":"0.19"},{"v":3.4926724022672,"d":"3.49"},{"v":10.0415677758233,"d":"10.04"},{"v":5.50519766774211,"d":"5.51"},null,"X"]
["g12.t1",{"$nulls":20},"X","X"]
["g13.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|294461638|gb|ADE76379.1|",{"$nulls":4},{"v":0.0370354252439833,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.088218808952184,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g14.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0155019458031512,"d":"0.02"},{"v":0.0178658575925955,"d":"0.02"},{"v":0.0570842680731327,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g15.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0883941283384547,"d":"0.09"},{"v":0.155681067632731,"d":"0.16"},{"v":0,"d":"0.00"},"X",null,"X"]
["g16.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|769794566|ref|XP_011628706.1|",{"$nulls":4},{"v":0.147006577667258,"d":"0.15"},{"v":0.254079948981118,"d":"0.25"},{"v":1.73918383074098,"d":"1.74"},{"v":0.262592110282496,"d":"0.26"}]
["g17.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.148452360483623,"d":"0.15"},{"v":0,"d":"0.00"},null,"X","X"]
["g18.t1",{"$nulls":8},"sp|P27401|POL_SFV3L","Pro-Pol polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0.0505130489602799,"d":"0.05"},{"v":0.028964744987589,"d":"0.03"},{"v":0.680774156214001,"d":"0.68"},{"v":0.111049183715949,"d":"0.11"},"X"]
["g19.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.03792881037286,"d":"0.04"},{"v":0.291450752824737,"d":"0.29"},{"v":0,"d":"0.00"},"X"]
["g20.t1","0043170:0044238",5488,16020,"macromolecule metabolic process:primary metabolic process","binding","membrane","ARATHwo_AT5G16930.1","AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G03060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|38346992|emb|CAD40278.2|",{"$nulls":4},{"v":0.130402477489625,"d":"0.13"},{"v":0.651181131743204,"d":"0.65"},{"v":2.78312424761132,"d":"2.78"},{"v":3.68202691091164,"d":"3.68"},null,"X"]
["g21.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.075590792782142,"d":"0.08"},{"v":0.40569445687313,"d":"0.41"},{"v":0,"d":"0.00"},"X",null,"X"]
["g22.t1",{"$nulls":19},"X",null,"X"]
["g23.t1",6351,"0016779:0046872:0097159:1901363",44424,"transcription, DNA-dependent","nucleotidyltransferase activity:metal ion binding:organic cyclic compound binding:heterocyclic compound binding","intracellular part","ARATHwo_AT4G35800.1","Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.","sp|P18616|NRPB1_ARATH","DNA-directed RNA polymerase II subunit 1","gi|68300821|gb|AAY89351.1|"]
["g24.t1",null,5488,null,null,"binding",null,"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","sp|Q18DN4|HMU_HALWD","Halomucin","gi|685276785|ref|XP_009129348.1|",{"$nulls":4},{"v":0.114421529754743,"d":"0.11"},{"v":0.268215697394964,"d":"0.27"},{"v":0.558690045526277,"d":"0.56"},{"v":0.476723892986476,"d":"0.48"}]
["g25.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|38346992|emb|CAD40278.2|",{"$nulls":9},"X"]
["g26.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.175745253280259,"d":"0.18"},{"v":0.184183237678352,"d":"0.18"},{"v":0.148336041509013,"d":"0.15"},null,"X","X"]
["g27.t1",{"$nulls":8},"sp|Q9WJR5|POK19_HUMAN","Endogenous retrovirus group K member 19 Pol protein","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0447311597410593,"d":"0.04"},{"v":0.723269441592899,"d":"0.72"},{"v":0.39345694064979,"d":"0.39"},"X"]
["g28.t1",{"$nulls":6},"ARATHwo_AT3G13010.1","hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 542 Blast hits to 530 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 539; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).",null,null,"gi|222640338|gb|EEE68470.1|",{"$nulls":4},{"v":0.0191455645891014,"d":"0.02"},{"v":0.0220244296719067,"d":"0.02"},{"v":0.121229628484657,"d":"0.12"},{"v":0,"d":"0.00"}]
["g29.t1",{"$nulls":15},{"v":0.663500766535691,"d":"0.66"},{"v":0,"d":"0.00"},{"v":0.700445583024353,"d":"0.70"},{"v":0.36987646138583,"d":"0.37"}]
["g30.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.153727998088258,"d":"0.15"},{"v":0.287946231498953,"d":"0.29"},"X",null,"X"]
["g31.t1",{"$nulls":10},"gi|688556529|ref|XP_009300006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0206316311213695,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.0404561424517247,"d":"0.04"},"X"]
["g32.t1",{"$nulls":12},"x","x","x",{"v":19.0916602655476,"d":"19.09"},{"v":7.95148243711972,"d":"7.95"},{"v":5.3576111651117,"d":"5.36"},{"v":28.249515909861,"d":"28.25"}]
["g33.t1","0044249:0008610:0044255:0044283",16491,16020,"cellular biosynthetic process:lipid biosynthetic process:cellular lipid metabolic process:small molecule biosynthetic process","oxidoreductase activity","membrane","ARATHwo_AT1G67730.1","Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.","sp|Q8L9C4|KCR1_ARATH","Very-long-chain 3-oxoacyl-CoA reductase 1","gi|148910781|gb|ABR18457.1|",null,"x","x","x",{"v":57.7385563022493,"d":"57.74"},{"v":56.2097838303654,"d":"56.21"},{"v":15.8880522050822,"d":"15.89"},{"v":37.2702584978878,"d":"37.27"}]
["g34.t1","0007018:0008152","0008017:0005524:0003777","0005871:0005874","microtubule-based movement:metabolic process","microtubule binding:ATP binding:microtubule motor activity","kinesin complex:microtubule","ARATHwo_AT3G17360.1","PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.","sp|Q27IK7|POK1_ARATH","Phragmoplast orienting kinesin-1","gi|567197330|ref|XP_006406539.1|"]
["g35.t1"]
["g36.t1",null,5488,5856,null,"binding","cytoskeleton",{"$nulls":4},"gi|698477436|ref|XP_009785936.1|",null,null,"x","x",{"v":0.337554846156314,"d":"0.34"},{"v":3.82209291517296,"d":"3.82"},{"v":4.36662932093688,"d":"4.37"},{"v":13.4874293385201,"d":"13.49"}]
["g36.t2",null,5488,5856,null,"binding","cytoskeleton",{"$nulls":4},"gi|698477436|ref|XP_009785936.1|",null,null,"x","x",{"v":0.337554846156314,"d":"0.34"},{"v":3.82209291517296,"d":"3.82"},{"v":4.36662932093688,"d":"4.37"},{"v":13.4874293385201,"d":"13.49"}]
["g37.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727568580|ref|XP_010456761.1|",{"$nulls":8},"X"]
["g38.t1",{"$nulls":19},"X",null,"X"]
["g39.t1",{"$nulls":15},{"v":0.16183644917248,"d":"0.16"},{"v":0,"d":"0.00"},{"v":7.52804924371064,"d":"7.53"},{"v":0,"d":"0.00"},null,"X","X"]
["g40.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923749700|ref|XP_013673944.1|",{"$nulls":4},{"v":0.396944097274567,"d":"0.40"},{"v":0.649528299984732,"d":"0.65"},{"v":3.1821548409303,"d":"3.18"},{"v":1.09383255498022,"d":"1.09"},null,"X"]
["g41.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.110298871173841,"d":"0.11"},{"v":0,"d":"0.00"}]
["g42.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0351674234216183,"d":"0.04"},{"v":0.292446097161495,"d":"0.29"},{"v":0.471822110552975,"d":"0.47"},"X",null,"X"]
["g43.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).",null,null,"gi|919094182|ref|XP_013383945.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":1.68607856803982,"d":"1.69"},{"v":10.5006482498264,"d":"10.50"},{"v":0.16179934403792,"d":"0.16"}]
["g44.t1",{"$nulls":10},"gi|612392085|ref|XP_007511563.1|",null,null,"x","x",{"v":0.0389531182196138,"d":"0.04"},{"v":0.61917524356829,"d":"0.62"},{"v":9.44687766311243,"d":"9.45"},{"v":0.044268423480198,"d":"0.04"}]
["g45.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.195659034169387,"d":"0.20"},{"v":0.0687095078078187,"d":"0.07"},null,"X"]
["g46.t1","0009072:0000096:0006086:0016126:0006636:0006766:0006546:0019748:0009106:0019288:0007020:0008652:0009695:0016132:0006733:0009117",4742,"0009941:0016020:0022626:0009570:0009534:0005739","aromatic amino acid family metabolic process:sulfur amino acid metabolic process:acetyl-CoA biosynthetic process from pyruvate:sterol biosynthetic process:unsaturated fatty acid biosynthetic process:vitamin metabolic process:glycine catabolic process:secondary metabolic process:lipoate metabolic process:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:microtubule nucleation:cellular amino acid biosynthetic process:jasmonic acid biosynthetic process:brassinosteroid biosynthetic process:oxidoreduction coenzyme metabolic process:nucleotide metabolic process","dihydrolipoyllysine-residue acetyltransferase activity","chloroplast envelope:membrane:cytosolic ribosome:chloroplast stroma:chloroplast thylakoid:mitochondrion","ARATHwo_AT1G34430.1","embryo defective 3003 (EMB3003); FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, acyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cytosolic ribosome, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: 2-oxoacid dehydrogenases acyltransferase family protein (TAIR:AT3G25860.1); Has 22237 Blast hits to 19790 proteins in 2346 species: Archae - 125; Bacteria - 13063; Metazoa - 719; Fungi - 466; Plants - 373; Viruses - 0; Other Eukaryotes - 7491 (source: NCBI BLink).","sp|Q9C8P0|ODP25_ARATH","Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic","gi|302753466|ref|XP_002960157.1|",null,null,"x","x",{"v":49.6442466144663,"d":"49.64"},{"v":371.634956821078,"d":"371.63"},{"v":138.813256861383,"d":"138.81"},{"v":15.1465942064341,"d":"15.15"}]
["g47.t1",null,16787,null,null,"hydrolase activity",null,"ARATHwo_AT4G14570.1","Encodes an acylamino acid-releasing enzyme (AARE) catalyzing the N-terminal hydrolysis of N[alpha]-acylpeptides to release N[alpha]-acylated amino acids","sp|Q8R146|APEH_MOUSE","Acylamino-acid-releasing enzyme","gi|159485732|ref|XP_001700898.1|",null,null,"x","x",{"v":2.25712704947594,"d":"2.26"},{"v":1.9312927336956,"d":"1.93"},{"v":8.01511177486501,"d":"8.02"},{"v":0.115111642979532,"d":"0.12"}]
["g48.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":3.07219155864124,"d":"3.07"},{"v":2.29302756186701,"d":"2.29"},{"v":2.46705713365779,"d":"2.47"},"X",null,"X"]
["g49.t1",{"$nulls":6},"ARATHwo_AT1G19580.1","Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.","sp|Q9FWR5|GCA1_ARATH","Gamma carbonic anhydrase 1, mitochondrial","gi|659087978|ref|XP_008444737.1|",null,"x","x","x",{"v":114.674743718396,"d":"114.67"},{"v":314.15411971465,"d":"314.15"},{"v":148.061149711181,"d":"148.06"},{"v":150.493457773778,"d":"150.49"}]
["g50.t1",{"$nulls":8},"sp|P51517|POL_SRV2","Pol polyprotein","gi|661185511|emb|CDH52155.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.033701719877281,"d":"0.03"},{"v":0.0871261582450306,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g51.t1",{"$nulls":10},"gi|313184307|emb|CBL94172.1|",{"$nulls":8},"X"]
["g52.t1"]
["g53.t1",{"$nulls":6},"ARATHwo_AT2G20680.1","Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G28320.1); Has 827 Blast hits to 815 proteins in 205 species: Archae - 18; Bacteria - 244; Metazoa - 38; Fungi - 187; Plants - 310; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","sp|Q7Y223|MAN2_ARATH","Mannan endo-1,4-beta-mannosidase 2","gi|729343341|ref|XP_010540874.1|",null,null,"x","x",{"v":24.6555196909031,"d":"24.66"},{"v":72.8372682407624,"d":"72.84"},{"v":39.5460405373284,"d":"39.55"},{"v":1.17496527053491,"d":"1.17"}]
["g54.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|595484032|gb|EXX71174.1|",{"$nulls":8},"X"]
["g55.t1",{"$nulls":13},"x","x",{"v":3.0037985899382,"d":"3.00"},{"v":2.13979661553525,"d":"2.14"},{"v":0.826852075212437,"d":"0.83"},{"v":16.0164551525527,"d":"16.02"}]
["g56.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|3810595|gb|AAC69377.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.652667409700908,"d":"0.65"},{"v":0,"d":"0.00"},"X"]
["g57.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).","sp|O75132|ZBED4_HUMAN","Zinc finger BED domain-containing protein 4","gi|923597104|ref|XP_013739946.1|"]
["g58.t1"]
["g59.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|672158093|ref|XP_008798775.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0365047603208591,"d":"0.04"},{"v":0.224287779648262,"d":"0.22"},{"v":0,"d":"0.00"},"X"]
["g60.t1",{"$nulls":6},"ARATHwo_AT3G26420.1","Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance. Members of this protein family include AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b) and AT5G04280 (AtRZ-1c)."]
["g61.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.456259538410953,"d":"0.46"},{"v":0,"d":"0.00"},"X",null,"X"]
["g62.t1","0007018:0001539:0008152","0003777:0005524:0016887",5858,"microtubule-based movement:ciliary or bacterial-type flagellar motility:metabolic process","microtubule motor activity:ATP binding:ATPase activity","axonemal dynein complex",null,null,"sp|Q9C0G6|DYH6_HUMAN","Dynein heavy chain 6, axonemal","gi|168015796|ref|XP_001760436.1|",null,null,"x","x",{"v":0.143851118988074,"d":"0.14"},{"v":0.0859678406871125,"d":"0.09"},{"v":17.2031369438998,"d":"17.20"},{"v":0,"d":"0.00"}]
["g63.t1",{"$nulls":10},"gi|923854260|ref|XP_013704502.1|",{"$nulls":4},{"v":0.0311564873355017,"d":"0.03"},{"v":0.309461219252195,"d":"0.31"},{"v":1.09626249416588,"d":"1.10"},{"v":0.509156695418479,"d":"0.51"},"X"]
["g64.t1","0007018:0001539:0008152","0003777:0005524:0016887",5858,"microtubule-based movement:ciliary or bacterial-type flagellar motility:metabolic process","microtubule motor activity:ATP binding:ATPase activity","axonemal dynein complex",null,null,"sp|Q9SMH3|DYH1A_CHLRE","Dynein-1-alpha heavy chain, flagellar inner arm I1 complex","gi|302771800|ref|XP_002969318.1|",{"$nulls":9},"X"]
["g65.t1","0007018:0001539:0008152","0003777:0005524:0016887",5858,"microtubule-based movement:ciliary or bacterial-type flagellar motility:metabolic process","microtubule motor activity:ATP binding:ATPase activity","axonemal dynein complex",null,null,"sp|Q754R2|DDI1_ASHGO","DNA damage-inducible protein 1","gi|168015796|ref|XP_001760436.1|",{"$nulls":9},"X"]
["g66.t1",6928,"0017111:0000166",30286,"cellular component movement","nucleoside-triphosphatase activity:nucleotide binding","dynein complex",{"$nulls":4},"gi|302771800|ref|XP_002969318.1|",{"$nulls":9},"X"]
["g67.t1",{"$nulls":10},"gi|302828088|ref|XP_002945611.1|",{"$nulls":4},{"v":5.58443846077486,"d":"5.58"},{"v":4.32230279452952,"d":"4.32"},{"v":19.770119974569,"d":"19.77"},{"v":3.56425831198885,"d":"3.56"}]
["g68.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0183449652329823,"d":"0.02"},{"v":1.16963888099032,"d":"1.17"},{"v":0.179690059047575,"d":"0.18"},"X"]
["g69.t1",{"$nulls":8},"sp|Q754R2|DDI1_ASHGO","DNA damage-inducible protein 1","gi|698564737|ref|XP_009773064.1|",{"$nulls":9},"X"]
["g70.t1","0044699:0016070:0006464","0003824:0005488",null,"single-organism process:RNA metabolic process:cellular protein modification process","catalytic activity:binding",null,"ARATHwo_AT1G55250.1","Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.","sp|Q336R3|BRE1B_ORYSJ","E3 ubiquitin-protein ligase BRE1-like 2","gi|168016988|ref|XP_001761030.1|",{"$nulls":4},{"v":0.167165796271856,"d":"0.17"},{"v":0.503503792239613,"d":"0.50"},{"v":1.19914388897338,"d":"1.20"},{"v":0.560474743743012,"d":"0.56"}]
["g71.t1",6928,17111,30286,"cellular component movement","nucleoside-triphosphatase activity","dynein complex",null,null,"sp|Q9C0G6|DYH6_HUMAN","Dynein heavy chain 6, axonemal","gi|159476346|ref|XP_001696272.1|",{"$nulls":9},"X"]
["g72.t1",{"$nulls":10},"gi|551634824|ref|XP_005820251.1|",{"$nulls":4},{"v":0.036748759082235,"d":"0.04"},{"v":1.21989291080644,"d":"1.22"},{"v":4.40876062443906,"d":"4.41"},{"v":2.13395724090858,"d":"2.13"},"X"]
["g73.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|38347553|emb|CAD39388.2|",{"$nulls":4},{"v":3.56596065590026,"d":"3.57"},{"v":3.34972319740346,"d":"3.35"},{"v":5.00977227087559,"d":"5.01"},{"v":3.25255988752094,"d":"3.25"},null,"X"]
["g74.t1","0048438:0006261:0016458:0048827:0051276:0019219:0048449:0043414:0044710:0007059:0022402:2000112:0007126:0040029","0003916:0003676:0046872",null,"floral whorl development:DNA-dependent DNA replication:gene silencing:phyllome development:chromosome organization:regulation of nucleobase-containing compound metabolic process:floral organ formation:macromolecule methylation:single-organism metabolic process:chromosome segregation:cell cycle process:regulation of cellular macromolecule biosynthetic process:meiosis:regulation of gene expression, epigenetic","DNA topoisomerase activity:nucleic acid binding:metal ion binding",null,"ARATHwo_AT5G63920.1","Encodes topoisomerase 3alpha. Suppresses somatic crossovers. Essential for resolution of meiotic recombination intermediates.","sp|Q9LVP1|TOP3A_ARATH","DNA topoisomerase 3-alpha","gi|168067139|ref|XP_001785482.1|",null,null,"x","x",{"v":1.00850968849484,"d":"1.01"},{"v":0.914664016370051,"d":"0.91"},{"v":2.36949684781771,"d":"2.37"},{"v":0.37835735665746,"d":"0.38"}]
["g75.t1","0031047:0007067:0006275:0051567:0000712:0048453:0006265:0006342:0006306:0051726:0048451:0006270:0006281","0003917:0008270:0003677",5694,"gene silencing by RNA:mitosis:regulation of DNA replication:histone H3-K9 methylation:resolution of meiotic recombination intermediates:sepal formation:DNA topological change:chromatin silencing:DNA methylation:regulation of cell cycle:petal formation:DNA replication initiation:DNA repair","DNA topoisomerase type I activity:zinc ion binding:DNA binding","chromosome","ARATHwo_AT2G32000.1","DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim domain, subgroup (InterPro:IPR006154), Toprim domain (InterPro:IPR006171), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q8T2T7|TOP3_DICDI","DNA topoisomerase 3","gi|168067139|ref|XP_001785482.1|",{"$nulls":4},{"v":0.251903828666611,"d":"0.25"},{"v":0.254279226107826,"d":"0.25"},{"v":0.534736974065988,"d":"0.53"},{"v":0.485944419605985,"d":"0.49"},null,"X"]
["g76.t1",{"$nulls":10},"gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.101213679628971,"d":"0.10"},{"v":0.666834779812676,"d":"0.67"},{"v":0.54160229171605,"d":"0.54"},"X"]
["g77.t1"]
["g78.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|731312369|ref|XP_010674186.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.047778692066666,"d":"0.05"},{"v":0.345689702548703,"d":"0.35"},{"v":0,"d":"0.00"}]
["g79.t1",8152,16758,16021,"metabolic process","transferase activity, transferring hexosyl groups","integral to membrane","ARATHwo_AT4G37690.1","Galactosyl transferase GMA12/MNN10 family protein; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: Galactosyl transferase GMA12/MNN10 family protein (TAIR:AT2G22900.1); Has 507 Blast hits to 506 proteins in 109 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 185; Plants - 285; Viruses - 4; Other Eukaryotes - 29 (source: NCBI BLink).","sp|P50108|MNN10_YEAST","Probable alpha-1,6-mannosyltransferase MNN10","gi|302793604|ref|XP_002978567.1|",null,null,"x","x",{"v":9.05097121731529,"d":"9.05"},{"v":4.11784360255323,"d":"4.12"},{"v":8.13808437839725,"d":"8.14"},{"v":3.66169740532365,"d":"3.66"}]
["g80.t1",{"$nulls":15},{"v":0.133642665781241,"d":"0.13"},{"v":0.0879643797467117,"d":"0.09"},{"v":12.3814635963495,"d":"12.38"},{"v":0.126238111003152,"d":"0.13"}]
["g81.t1"]
["g82.t1"]
["g83.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0727944507416293,"d":"0.07"},{"v":0.0844173628190397,"d":"0.08"},{"v":0,"d":"0.00"},"X",null,"X"]
["g84.t1","0044699:0006810",5215,5622,"single-organism process:transport","transporter activity","intracellular","ARATHwo_AT4G39170.1","Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT2G21520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|F4JVA6|SFH6_ARATH","Phosphatidylinositol/phosphatidylcholine transfer protein SFH6","gi|168031077|ref|XP_001768048.1|",null,null,"x","x",{"v":20.9404565835901,"d":"20.94"},{"v":5.04213376477812,"d":"5.04"},{"v":2.59735585682912,"d":"2.60"},{"v":18.2929109273662,"d":"18.29"}]
["g85.t1",{"$nulls":10},"gi|602627394|ref|XP_007420645.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.125310111271358,"d":"0.13"},{"v":0,"d":"0.00"}]
["g86.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.446889436235597,"d":"0.45"},{"v":0,"d":"0.00"}]
["g87.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.331096828037334,"d":"0.33"},{"v":1.99364310794977,"d":"1.99"},{"v":0.103636271595961,"d":"0.10"},"X"]
["g88.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595496422|gb|EXX77696.1|",{"$nulls":4},{"v":0.343567454056015,"d":"0.34"},{"v":0.699244644919793,"d":"0.70"},{"v":17.3198544877353,"d":"17.32"},{"v":0.329948106747097,"d":"0.33"},null,"X"]
["g89.t1",null,16787,null,null,"hydrolase activity",{"$nulls":3},"sp|P22222|E13B_CELCE","Glucan endo-1,3-beta-glucosidase","gi|521300118|ref|WP_020464386.1|",null,null,"x","x",{"v":1.61283404943473,"d":"1.61"},{"v":0.299506526654507,"d":"0.30"},{"v":0.220889140893924,"d":"0.22"},{"v":0,"d":"0.00"}]
["g90.t1",{"$nulls":15},{"v":0.515544379900558,"d":"0.52"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.288778667183027,"d":"0.29"}]
["g91.t1",{"$nulls":15},{"v":0.0384131276011502,"d":"0.04"},{"v":0.723909684250603,"d":"0.72"},{"v":18.0172157903037,"d":"18.02"},{"v":1.62250699143757,"d":"1.62"}]
["g92.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.222768645922046,"d":"0.22"},{"v":0.957482010560481,"d":"0.96"},{"v":0.170289469297379,"d":"0.17"},"X"]
["g93.t1",{"$nulls":15},{"v":0.461672630651152,"d":"0.46"},{"v":1.25527715150588,"d":"1.26"},{"v":27.6664778674706,"d":"27.67"},{"v":0.723541999285123,"d":"0.72"},null,"X","X"]
["g94.t1",{"$nulls":12},"x","x","x",{"v":25.8659848907131,"d":"25.87"},{"v":62.0785690141235,"d":"62.08"},{"v":23.1371812718715,"d":"23.14"},{"v":76.3333090144004,"d":"76.33"}]
["g95.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink)."]
["g96.t1"]
["g97.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|77555663|gb|ABA98459.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.174332591893001,"d":"0.17"},{"v":0.209656534398119,"d":"0.21"},{"v":0.075579871833832,"d":"0.08"},"X"]
["g98.t1",16192,null,5737,"vesicle-mediated transport",null,"cytoplasm","ARATHwo_AT2G27460.1","sec23/sec24 transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G07100.1); Has 1620 Blast hits to 1606 proteins in 237 species: Archae - 0; Bacteria - 2; Metazoa - 540; Fungi - 539; Plants - 300; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink).","sp|Q5E9J1|HNRPF_BOVIN","Heterogeneous nuclear ribonucleoprotein F","gi|147785809|emb|CAN62128.1|",{"$nulls":4},{"v":12.7593483761488,"d":"12.76"},{"v":8.46348599408707,"d":"8.46"},{"v":5.72688986480266,"d":"5.73"},{"v":9.47954818189839,"d":"9.48"}]
["g99.t1",null,null,"0044444:0043231",null,null,"cytoplasmic part:intracellular membrane-bounded organelle","ARATHwo_AT1G47640.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); Has 204 Blast hits to 204 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).","sp|Q6DFI2|TM147_XENLA","Transmembrane protein 147","gi|661889153|emb|CDP07596.1|",null,"x","x","x",{"v":33.4208794714679,"d":"33.42"},{"v":28.4509782648776,"d":"28.45"},{"v":11.487994528524,"d":"11.49"},{"v":24.0211481778517,"d":"24.02"}]
["g100.t1",{"$nulls":19},"X",null,"X"]
["g101.t1","0001510:0006626:0042255",3723,"0005829:0005730","RNA methylation:protein targeting to mitochondrion:ribosome assembly","RNA binding","cytosol:nucleolus","ARATHwo_AT4G15770.1","RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome assembly, ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosome biogenesis factor NIP7-like (InterPro:IPR005155), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Ribosome biogenesis factor, NIP7 (InterPro:IPR016686); Has 438 Blast hits to 438 proteins in 213 species: Archae - 5; Bacteria - 0; Metazoa - 151; Fungi - 132; Plants - 49; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).","sp|A4QND5|NIP7_XENTR","60S ribosome subunit biogenesis protein NIP7 homolog","gi|168032128|ref|XP_001768571.1|",null,null,"x","x",{"v":10.6934118213041,"d":"10.69"},{"v":6.68969136418014,"d":"6.69"},{"v":4.45847834098665,"d":"4.46"},{"v":2.93857483545756,"d":"2.94"}]
["g102.t1","0009653:0000278:0048364:0003006:0010033:0044267:0051301:0042023:0051726:0016043:0030154:0007276:0006950",null,"0044446:0005634","anatomical structure morphogenesis:mitotic cell cycle:root development:developmental process involved in reproduction:response to organic substance:cellular protein metabolic process:cell division:DNA endoreduplication:regulation of cell cycle:cellular component organization:cell differentiation:gamete generation:response to stress",null,"intracellular organelle part:nucleus","ARATHwo_AT2G20000.1","Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap.","sp|Q8LGU6|CD27B_ARATH","Cell division cycle protein 27 homolog B","gi|302822466|ref|XP_002992891.1|",{"$nulls":4},{"v":2.81677426148117,"d":"2.82"},{"v":1.39238419449835,"d":"1.39"},{"v":1.95427102460056,"d":"1.95"},{"v":0.878906482735089,"d":"0.88"}]
["g103.t1","0071704:0044238",16798,"0030529:0005739","organic substance metabolic process:primary metabolic process","hydrolase activity, acting on glycosyl bonds","ribonucleoprotein complex:mitochondrion","ARATHwo_AT3G49880.1","glycosyl hydrolase family protein 43; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 43 (InterPro:IPR006710); BEST Arabidopsis thaliana protein match is: Arabinanase/levansucrase/invertase (TAIR:AT5G67540.2); Has 1254 Blast hits to 1248 proteins in 224 species: Archae - 2; Bacteria - 1011; Metazoa - 1; Fungi - 133; Plants - 55; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).",null,null,"gi|670440280|ref|XP_008660435.1|",{"$nulls":4},{"v":5.72212333291318,"d":"5.72"},{"v":2.48149610558391,"d":"2.48"},{"v":9.83199240286893,"d":"9.83"},{"v":3.37156360076524,"d":"3.37"}]
["g104.t1"]
["g105.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g106.t1"]
["g107.t1","0044249:0008610:0006665:0044283","0004312:0016628",5789,"cellular biosynthetic process:lipid biosynthetic process:sphingolipid metabolic process:small molecule biosynthetic process","fatty acid synthase activity:oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","endoplasmic reticulum membrane","ARATHwo_AT3G55360.1","Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport.","sp|Q9M2U2|TECR_ARATH","Very-long-chain enoyl-CoA reductase","gi|702424057|ref|XP_010067405.1|",null,null,"x","x",{"v":34.3976933416834,"d":"34.40"},{"v":45.8531332600291,"d":"45.85"},{"v":15.3315329825908,"d":"15.33"},{"v":10.9023516036779,"d":"10.90"}]
["g108.t1",{"$nulls":8},"sp|P0C6U3|R1A_CVHN1","Replicase polyprotein 1a",{"$nulls":5},{"v":0.0373265989631267,"d":"0.04"},{"v":0.0850960093060037,"d":"0.09"},{"v":0.883532631886835,"d":"0.88"},{"v":0.327064028780383,"d":"0.33"},null,"X"]
["g109.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659121350|ref|XP_008460615.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.180595048145207,"d":"0.18"},{"v":0.596787661400853,"d":"0.60"},{"v":0.270431674196199,"d":"0.27"},"X"]
["g110.t1",{"$nulls":6},"ARATHwo_AT3G52140.4","tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1).","sp|F4J5S1|CLU_ARATH","Clustered mitochondria protein","gi|590724852|ref|XP_007052585.1|",null,null,"x","x",{"v":3.17957084316304,"d":"3.18"},{"v":12.5378514207797,"d":"12.54"},{"v":8.59571988973073,"d":"8.60"},{"v":15.5355213059974,"d":"15.54"}]
["g111.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.112570801530506,"d":"0.11"},{"v":0,"d":"0.00"},"X",null,"X"]
["g112.t1",{"$nulls":8},"sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab"]
["g113.t1",{"$nulls":15},{"v":0.0375162120435225,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.0494598929595097,"d":"0.05"},{"v":0,"d":"0.00"}]
["g114.t1",{"$nulls":8},"sp|Q76634|POL_HV2UC","Gag-Pol polyprotein"]
["g115.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).","sp|O75132|ZBED4_HUMAN","Zinc finger BED domain-containing protein 4","gi|566156681|ref|XP_006386323.1|"]
["g116.t1"]
["g117.t1",{"$nulls":10},"gi|302814899|ref|XP_002989132.1|",{"$nulls":9},"X"]
["g118.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|255582388|ref|XP_002531983.1|",{"$nulls":8},"X"]
["g119.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",{"$nulls":12},"X"]
["g120.t1"]
["g121.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595441411|gb|EXX53826.1|",{"$nulls":8},"X"]
["g122.t1",{"$nulls":10},"gi|748551144|dbj|GAM43382.1|",{"$nulls":8},"X"]
["g123.t1",{"$nulls":6},"ARATHwo_AT2G43210.1","Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).","sp|Q9ZW74|PUX11_ARATH","Plant UBX domain-containing protein 11","gi|470451627|ref|XP_004340525.1|",null,null,"x","x",{"v":7.02085023361769,"d":"7.02"},{"v":4.66668553387649,"d":"4.67"},{"v":5.04928614127483,"d":"5.05"},{"v":5.51009144931372,"d":"5.51"}]
["g124.t1",{"$nulls":6},"ARATHwo_AT1G43260.1","hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a","gi|593783193|ref|XP_007154637.1|",{"$nulls":4},{"v":0.568061281093185,"d":"0.57"},{"v":0.559526974874809,"d":"0.56"},{"v":1.01068524398075,"d":"1.01"},{"v":1.09370427787515,"d":"1.09"}]
["g125.t1",{"$nulls":15},{"v":4.10777706546288,"d":"4.11"},{"v":6.97326432120568,"d":"6.97"},{"v":8.27721769676309,"d":"8.28"},{"v":7.41325617705653,"d":"7.41"}]
["g126.t1",9987,null,null,"cellular process",null,null,"ARATHwo_AT4G08980.1","Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response.","sp|Q9UF56|FXL17_HUMAN","F-box/LRR-repeat protein 17","gi|586686944|ref|XP_006842065.1|",null,null,"x","x",{"v":2.48474253829592,"d":"2.48"},{"v":6.87992757564889,"d":"6.88"},{"v":7.64594633058347,"d":"7.65"},{"v":4.47507481198797,"d":"4.48"}]
["g127.t1"]
["g128.t1"]
["g129.t1"]
["g130.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",null,"ARATHwo_AT1G76480.2","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20890.1).","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923929682|ref|XP_013733635.1|",{"$nulls":4},{"v":0.357167643915635,"d":"0.36"},{"v":4.24903556445089,"d":"4.25"},{"v":3.99619894447878,"d":"4.00"},{"v":5.95959839108635,"d":"5.96"},null,"X"]
["g131.t1",{"$nulls":10},"gi|697141604|ref|XP_009624918.1|",null,null,"x","x",{"v":26.0377846447405,"d":"26.04"},{"v":25.8487968103817,"d":"25.85"},{"v":14.9066611109084,"d":"14.91"},{"v":52.3724156066179,"d":"52.37"}]
["g131.t2",{"$nulls":6},"ARATHwo_AT5G19430.1","RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G12310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P48754|BRCA1_MOUSE","Breast cancer type 1 susceptibility protein homolog","gi|697141604|ref|XP_009624918.1|",null,null,"x","x",{"v":26.0377846447405,"d":"26.04"},{"v":25.8487968103817,"d":"25.85"},{"v":14.9066611109084,"d":"14.91"},{"v":52.3724156066179,"d":"52.37"}]
["g132.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.147222525249237,"d":"0.15"},{"v":0.607663546700486,"d":"0.61"},{"v":0.353042509463564,"d":"0.35"},"X"]
["g133.t1",{"$nulls":8},"sp|Q6YK44|SUT4_ORYSJ","Sucrose transport protein SUT4","gi|260175557|gb|ACX33146.1|",{"$nulls":4},{"v":1.6742109276751,"d":"1.67"},{"v":1.97749921074378,"d":"1.98"},{"v":2.71463525181532,"d":"2.71"},{"v":2.93249494002149,"d":"2.93"},null,"X"]
["g134.t1",{"$nulls":10},"gi|694385212|ref|XP_009368442.1|",{"$nulls":4},{"v":7.1500844576045,"d":"7.15"},{"v":48.465907643473,"d":"48.47"},{"v":12.4484767176446,"d":"12.45"},{"v":18.216082900803,"d":"18.22"}]
["g135.t1","0044763:0044765",22857,"0044464:0016020","single-organism cellular process:single-organism transport","transmembrane transporter activity","cell part:membrane","ARATHwo_AT2G02860.1","encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.","sp|O80605|SUC3_ARATH","Sucrose transport protein SUC3","gi|168050414|ref|XP_001777654.1|",null,null,"x","x"]
["g136.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":5},{"v":9.95952771095226,"d":"9.96"},{"v":18.020611344967,"d":"18.02"},{"v":104.115494145232,"d":"104.12"},{"v":28.2072349124201,"d":"28.21"},"X"]
["g137.t1","0048235:0006355:0007060",8270,5634,"pollen sperm cell differentiation:regulation of transcription, DNA-dependent:male meiosis chromosome segregation","zinc ion binding","nucleus","ARATHwo_AT1G66170.1","encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.","sp|Q7X6Y7|MMD1_ARATH","PHD finger protein MALE MEIOCYTE DEATH 1","gi|303275057|ref|XP_003056828.1|",{"$nulls":4},{"v":0.0609664397390437,"d":"0.06"},{"v":0.0507411569720156,"d":"0.05"},{"v":0.273783081994325,"d":"0.27"},{"v":0.077437115945703,"d":"0.08"},null,"X"]
["g138.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|727473960|ref|XP_010412735.1|"]
["g139.t1","0048856:0007275:0006351",46872,null,"anatomical structure development:multicellular organismal development:transcription, DNA-dependent","metal ion binding",null,"ARATHwo_AT5G22260.1","Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.","sp|Q9FMS5|MS1_ARATH","PHD finger protein MALE STERILITY 1","gi|302768629|ref|XP_002967734.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.664559473077422,"d":"0.66"},{"v":0.729585225763613,"d":"0.73"}]
["g140.t1",{"$nulls":10},"gi|599117036|ref|XP_007386384.1|",{"$nulls":8},"X"]
["g141.t1",8152,16301,null,"metabolic process","kinase activity",null,"ARATHwo_AT3G58690.1","Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink).","sp|O49339|PTI12_ARATH","PTI1-like tyrosine-protein kinase 2","gi|902232767|gb|KNA22788.1|",null,null,"x","x",{"v":16.5994403783968,"d":"16.60"},{"v":4.17316276365434,"d":"4.17"},{"v":2.13132756230155,"d":"2.13"},{"v":1.07055301820843,"d":"1.07"}]
["g142.t1",null,5488,16020,null,"binding","membrane",{"$nulls":4},"gi|62734325|gb|AAX96434.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0542870350607933,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.0772746999629603,"d":"0.08"},null,"X"]
["g143.t1",{"$nulls":6},"ARATHwo_AT3G51690.1","DNA helicase homolog PIF1.","sp|Q381V6|PIF4_TRYB2","ATP-dependent DNA helicase PIF4","gi|848859757|ref|XP_012830753.1|",{"$nulls":4},{"v":0.0142216457674159,"d":"0.01"},{"v":0.15916380505212,"d":"0.16"},{"v":0.301703662392506,"d":"0.30"},{"v":0.198366069713837,"d":"0.20"}]
["g144.t1",{"$nulls":8},"sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|923732912|ref|XP_013668695.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.042344314236163,"d":"0.04"},{"v":0.572833419130617,"d":"0.57"},{"v":0.120203464909995,"d":"0.12"},"X"]
["g145.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",null,null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|731355723|ref|XP_010689289.1|",{"$nulls":4},{"v":0.2999654671554,"d":"0.30"},{"v":0.573222338503181,"d":"0.57"},{"v":2.68882695067188,"d":"2.69"},{"v":0.353907259097846,"d":"0.35"},"X"]
["g146.t1"]
["g147.t1",8152,16740,9507,"metabolic process","transferase activity","chloroplast","ARATHwo_AT2G41040.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to karrikin; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G78140.1); Has 8121 Blast hits to 8118 proteins in 1828 species: Archae - 365; Bacteria - 6420; Metazoa - 92; Fungi - 271; Plants - 324; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).","sp|Q0WPT7|Y2104_ARATH","Uncharacterized methyltransferase At2g41040, chloroplastic","gi|168052697|ref|XP_001778776.1|",null,"x","x","x",{"v":30.8175894578637,"d":"30.82"},{"v":4.4794321695104,"d":"4.48"},{"v":5.46528581397961,"d":"5.47"},{"v":2.20102131114279,"d":"2.20"}]
["g148.t1"]
["g149.t1","0001510:0000154:0009220",null,"0005829:0005618:0009506:0031428","RNA methylation:rRNA modification:pyrimidine ribonucleotide biosynthetic process",null,"cytosol:cell wall:plasmodesma:box C/D snoRNP complex","ARATHwo_AT1G56110.1","NOP56-like protein","sp|Q5RA29|NOP56_PONAB","Nucleolar protein 56","gi|168028810|ref|XP_001766920.1|",null,null,"x","x",{"v":44.4124612518248,"d":"44.41"},{"v":29.7798618469151,"d":"29.78"},{"v":12.340881680048,"d":"12.34"},{"v":42.6073497415755,"d":"42.61"}]
["g150.t1"]
["g151.t1",{"$nulls":6},"ARATHwo_AT3G07720.1","Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 5 (TAIR:AT5G48180.1); Has 10920 Blast hits to 5857 proteins in 349 species: Archae - 8; Bacteria - 366; Metazoa - 5368; Fungi - 1057; Plants - 2178; Viruses - 16; Other Eukaryotes - 1927 (source: NCBI BLink).","sp|P80197|AFK_PHYPO","Actin-fragmin kinase","gi|465793127|emb|CCU98247.1|",{"$nulls":4},{"v":3.8694242736447E-3,"d":"0.00"},{"v":0.00862496464779607,"d":"0.01"},{"v":31.4932219037276,"d":"31.49"},{"v":0.039184969788493,"d":"0.04"}]
["g152.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0470891295290587,"d":"0.05"},{"v":0.108974887330812,"d":"0.11"},{"v":0,"d":"0.00"},"X"]
["g153.t1",null,8270,null,null,"zinc ion binding",null,"ARATHwo_AT3G19950.1","RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink).","sp|P0CH30|RING1_GOSHI","E3 ubiquitin-protein ligase RING1","gi|593704353|ref|XP_007152550.1|",null,null,"x","x",{"v":6.09991856759621,"d":"6.10"},{"v":27.8029379208782,"d":"27.80"},{"v":22.3893451514835,"d":"22.39"},{"v":24.6899315389726,"d":"24.69"}]
["g154.t1","0009909:0048449:0008033:0032259:0016570",9019,"0005829:0005739","regulation of flower development:floral organ formation:tRNA processing:methylation:histone modification","tRNA (guanine-N1-)-methyltransferase activity","cytosol:mitochondrion","ARATHwo_AT3G56120.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Met10 (InterPro:IPR003402); BEST Arabidopsis thaliana protein match is: Met-10+ like family protein (TAIR:AT4G27340.1); Has 1391 Blast hits to 1232 proteins in 427 species: Archae - 416; Bacteria - 202; Metazoa - 266; Fungi - 150; Plants - 114; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).","sp|Q93YU6|TRM51_ARATH","tRNA (guanine(37)-N1)-methyltransferase 1","gi|645274956|ref|XP_008242584.1|",null,null,"x","x",{"v":6.50766265678109,"d":"6.51"},{"v":5.50859502520497,"d":"5.51"},{"v":4.13792130403868,"d":"4.14"},{"v":3.76910931859229,"d":"3.77"}]
["g155.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.193414769491036,"d":"0.19"},{"v":0.35680662176089,"d":"0.36"}]
["g156.t1"]
["g157.t1"]
["g158.t1",{"$nulls":15},{"v":2.02483375819029,"d":"2.02"},{"v":2.43717891735742,"d":"2.44"},{"v":4.74238307443708,"d":"4.74"},{"v":1.98468389167686,"d":"1.98"}]
["g159.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|384494287|gb|EIE84778.1|",{"$nulls":8},"X"]
["g160.t1",{"$nulls":6},"ARATHwo_AT2G33550.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.0629586007098303,"d":"0.06"},{"v":0.104265773443047,"d":"0.10"},{"v":0,"d":"0.00"}]
["g161.t1",{"$nulls":8},"sp|O94248|MDN1_SCHPO","Midasin",{"$nulls":5},{"v":0.192792683018194,"d":"0.19"},{"v":0.22910951936149,"d":"0.23"},{"v":16.9904934065839,"d":"16.99"},{"v":0.974177772558881,"d":"0.97"}]
["g162.t1",{"$nulls":6},"ARATHwo_AT1G25375.1","Metallo-hydrolase/oxidoreductase superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 5673 Blast hits to 5670 proteins in 1426 species: Archae - 148; Bacteria - 3668; Metazoa - 137; Fungi - 138; Plants - 124; Viruses - 0; Other Eukaryotes - 1458 (source: NCBI BLink).","sp|Q1LZ83|LACB2_BOVIN","Beta-lactamase-like protein 2","gi|168053575|ref|XP_001779211.1|",null,null,"x","x",{"v":10.3734589778807,"d":"10.37"},{"v":5.71684386708505,"d":"5.72"},{"v":6.19980889402734,"d":"6.20"},{"v":16.0206539897312,"d":"16.02"}]
["g163.t1",null,null,"0043231:0044444",null,null,"intracellular membrane-bounded organelle:cytoplasmic part","ARATHwo_AT3G55250.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|116781885|gb|ABK22284.1|",null,null,"x","x",{"v":15.7968264060621,"d":"15.80"},{"v":10.6622404184383,"d":"10.66"},{"v":14.2517393181755,"d":"14.25"},{"v":2.8832058374626,"d":"2.88"}]
["g164.t1",6811,null,null,"ion transport",null,null,"ARATHwo_AT3G08650.2","ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G20870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q9C9Z1|ZTP50_ARATH","Putative zinc transporter At3g08650","gi|302811823|ref|XP_002987600.1|",null,null,"x","x",{"v":4.71417927834079,"d":"4.71"},{"v":4.75992563418732,"d":"4.76"},{"v":9.25939473819328,"d":"9.26"},{"v":3.37272722652812,"d":"3.37"}]
["g165.t1",6629,null,null,"lipid metabolic process",null,null,"ARATHwo_AT1G73920.1","alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: lipase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: AB-hydrolase-associated lipase region (InterPro:IPR006693); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G18460.1); Has 1703 Blast hits to 1686 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1158; Fungi - 276; Plants - 166; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).","sp|Q29458|LIPG_BOVIN","Gastric triacylglycerol lipase","gi|168001783|ref|XP_001753594.1|",null,null,"x","x",{"v":5.10519021961156,"d":"5.11"},{"v":10.8921258338634,"d":"10.89"},{"v":7.62814519972796,"d":"7.63"},{"v":13.5657265213507,"d":"13.57"}]
["g166.t1",{"$nulls":20},"X","X"]
["g167.t1",{"$nulls":6},"ARATHwo_AT4G20520.1","RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|141475|sp|P14381.1|YTX2_XENLA",{"$nulls":4},{"v":0.0328445518575435,"d":"0.03"},{"v":0.157156656634609,"d":"0.16"},{"v":0.209952974455575,"d":"0.21"},{"v":0,"d":"0.00"},null,"X"]
["g168.t1",71266,16846,9507,"'de novo' L-methionine biosynthetic process","carbon-sulfur lyase activity","chloroplast","ARATHwo_AT3G57050.1","Encodes second enzyme in the methionine biosynthetic pathway","sp|P53780|METC_ARATH","Cystathionine beta-lyase, chloroplastic","gi|734397938|gb|KHN30379.1|",null,null,"x",null,{"v":48.7225083557903,"d":"48.72"},{"v":14.8396685893677,"d":"14.84"},{"v":11.181800091757,"d":"11.18"},{"v":18.3556034181226,"d":"18.36"}]
["g169.t1",71266,16846,9507,"'de novo' L-methionine biosynthetic process","carbon-sulfur lyase activity","chloroplast",null,null,"sp|P00935|METB_ECOLI","Cystathionine gamma-synthase","gi|734397938|gb|KHN30379.1|",{"$nulls":4},{"v":2.51157715568786,"d":"2.51"},{"v":27.8197585013285,"d":"27.82"},{"v":2.51288064933023,"d":"2.51"},{"v":0.903630332274525,"d":"0.90"}]
["g170.t1"]
["g171.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.090336002862586,"d":"0.09"},{"v":0.0894226633570153,"d":"0.09"},{"v":0,"d":"0.00"},"X",null,"X"]
["g172.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|595484032|gb|EXX71174.1|",{"$nulls":8},"X"]
["g173.t1",null,3824,null,null,"catalytic activity",null,"ARATHwo_AT4G15880.1","EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.","sp|Q96HI0|SENP5_HUMAN","Sentrin-specific protease 5","gi|242025267|ref|XP_002433047.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0232366947076685,"d":"0.02"},{"v":0,"d":"0.00"}]
["g174.t1"]
["g175.t1",71266,16846,9507,"'de novo' L-methionine biosynthetic process","carbon-sulfur lyase activity","chloroplast","ARATHwo_AT3G57050.1","Encodes second enzyme in the methionine biosynthetic pathway","sp|P53780|METC_ARATH","Cystathionine beta-lyase, chloroplastic","gi|460407544|ref|XP_004249212.1|"]
["g176.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0652705539303093,"d":"0.07"},{"v":0,"d":"0.00"}]
["g177.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|586720326|ref|XP_006848698.1|",{"$nulls":4},{"v":0.0326566363310721,"d":"0.03"},{"v":0.0220410303736218,"d":"0.02"},{"v":0.042576265339869,"d":"0.04"},{"v":0,"d":"0.00"}]
["g178.t1",71266,16846,9507,"'de novo' L-methionine biosynthetic process","carbon-sulfur lyase activity","chloroplast",{"$nulls":4},"gi|460407544|ref|XP_004249212.1|"]
["g179.t1",71266,16846,9507,"'de novo' L-methionine biosynthetic process","carbon-sulfur lyase activity","chloroplast","ARATHwo_AT1G64660.1","Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.","sp|P50125|CYSD_EMENI","O-acetylhomoserine (thiol)-lyase","gi|460407544|ref|XP_004249212.1|",{"$nulls":4},{"v":15.829255161745,"d":"15.83"},{"v":38.7472460967437,"d":"38.75"},{"v":3.35857592575588,"d":"3.36"},{"v":0.869039737876293,"d":"0.87"}]
["g180.t1","0000075:0006259:0006974",null,null,"cell cycle checkpoint:DNA metabolic process:response to DNA damage stimulus",null,null,"ARATHwo_AT3G05480.3","Involved in the regulation of DNA damage repair and homologous recombination.","sp|Q99638|RAD9A_HUMAN","Cell cycle checkpoint control protein RAD9A","gi|672132669|ref|XP_008789921.1|",null,null,"x","x",{"v":11.4273359154309,"d":"11.43"},{"v":14.2901717707956,"d":"14.29"},{"v":8.28280830571602,"d":"8.28"},{"v":5.052829280778,"d":"5.05"}]
["g181.t1"]
["g182.t1",{"$nulls":10},"gi|695535224|ref|XP_009541633.1|",{"$nulls":4},{"v":0.113940650272354,"d":"0.11"},{"v":0.150721546610756,"d":"0.15"},{"v":0.265445550922584,"d":"0.27"},{"v":0.107820132300512,"d":"0.11"},"X"]
["g183.t1",{"$nulls":8},"sp|P27401|POL_SFV3L","Pro-Pol polyprotein","gi|596024107|ref|XP_007219137.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.305055451911966,"d":"0.31"},{"v":0.636522520671487,"d":"0.64"},{"v":0.043162468664156,"d":"0.04"},"X"]
["g184.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|727509438|ref|XP_010430902.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.146459194134754,"d":"0.15"},{"v":1.35528681220261,"d":"1.36"},{"v":0,"d":"0.00"},null,"X"]
["g185.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q6XKE6|POLG_PVCV2","Genome polyprotein","gi|923851487|ref|XP_013704088.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.055045529296919,"d":"0.06"},{"v":0.230227916796609,"d":"0.23"},{"v":0,"d":"0.00"},null,"X"]
["g186.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.28144500471627,"d":"1.28"},{"v":0,"d":"0.00"},"X"]
["g187.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.036007262544263,"d":"0.04"},{"v":0.0641526439926334,"d":"0.06"},{"v":0,"d":"0.00"}]
["g188.t1",{"$nulls":15},{"v":0.145589777150031,"d":"0.15"},{"v":0.0844731797303053,"d":"0.08"},{"v":0.106476620163851,"d":"0.11"},{"v":0,"d":"0.00"}]
["g189.t1",{"$nulls":13},"x","x",{"v":4.81978627209779,"d":"4.82"},{"v":5.85685658388434,"d":"5.86"},{"v":7.19330468133268,"d":"7.19"},{"v":1.00854959153985,"d":"1.01"}]
["g190.t1",{"$nulls":13},"x","x",{"v":1.83654876126898,"d":"1.84"},{"v":0.797502107055055,"d":"0.80"},{"v":0.441296975828788,"d":"0.44"},{"v":0.218138487505153,"d":"0.22"},null,"X","X"]
["g191.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.082127929900709,"d":"0.08"},{"v":0.0534967713698687,"d":"0.05"},{"v":0,"d":"0.00"}]
["g192.t1"]
["g193.t1"]
["g194.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|599127480|gb|AHN53418.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.137349815344268,"d":"0.14"},{"v":0,"d":"0.00"},null,"X"]
["g195.t1"]
["g196.t1",{"$nulls":6},"ARATHwo_AT1G17270.1","O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G50420.1); Has 98 Blast hits to 96 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","sp|Q66H30|GIN1_RAT","Gypsy retrotransposon integrase-like protein 1","gi|672186099|ref|XP_008812999.1|",null,null,"x","x",{"v":2.40959178729334,"d":"2.41"},{"v":3.96081486893634,"d":"3.96"},{"v":3.43183292398849,"d":"3.43"},{"v":4.33124464340834,"d":"4.33"}]
["g197.t1",null,46872,null,null,"metal ion binding",null,"ARATHwo_AT4G21160.1","ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.","sp|Q9FVJ3|AGD12_ARATH","ADP-ribosylation factor GTPase-activating protein AGD12","gi|695047714|ref|XP_009411745.1|",null,null,"x","x",{"v":18.8742709752096,"d":"18.87"},{"v":21.4227083170615,"d":"21.42"},{"v":23.8952626080685,"d":"23.90"},{"v":36.5569441731827,"d":"36.56"}]
["g198.t1",{"$nulls":8},"sp|Q2NL30|SUV91_BOVIN","Histone-lysine N-methyltransferase SUV39H1","gi|672206794|ref|XP_008779530.1|",null,null,"x","x",{"v":13.7579502774352,"d":"13.76"},{"v":14.5496586741279,"d":"14.55"},{"v":16.3867438481873,"d":"16.39"},{"v":33.5667015012507,"d":"33.57"},null,"X"]
["g199.t1",{"$nulls":13},"x","x",{"v":4.63207903719479,"d":"4.63"},{"v":4.05063600113718,"d":"4.05"},{"v":3.26087424126791,"d":"3.26"},{"v":4.99427651213305,"d":"4.99"}]
["g200.t1",44765,null,null,"single-organism transport",null,null,"ARATHwo_AT5G02040.1","prenylated RAB acceptor 1.A1 (PRA1.A1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11402.2); Has 236 Blast hits to 236 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 12; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","sp|Q9LZM7|PR1A1_ARATH","PRA1 family protein A1","gi|168066559|ref|XP_001785203.1|",null,null,"x","x",{"v":4.89194149136723,"d":"4.89"},{"v":7.33940020123308,"d":"7.34"},{"v":4.08152853175429,"d":"4.08"},{"v":12.7947516953299,"d":"12.79"}]
["g201.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.218148085506178,"d":"0.22"},{"v":0,"d":"0.00"}]
["g202.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink)."]
["g203.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|586677744|ref|XP_006839025.1|",{"$nulls":8},"X"]
["g204.t1",{"$nulls":15},{"v":0.06139025966291,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.129159842083848,"d":"0.13"},{"v":0,"d":"0.00"}]
["g205.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.120934836268343,"d":"0.12"},{"v":0.287527396934313,"d":"0.29"},{"v":0,"d":"0.00"}]
["g206.t1",{"$nulls":6},"ARATHwo_AT4G38050.1","Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 12 (TAIR:AT2G27810.1); Has 9537 Blast hits to 9467 proteins in 1922 species: Archae - 69; Bacteria - 7876; Metazoa - 365; Fungi - 138; Plants - 431; Viruses - 1; Other Eukaryotes - 657 (source: NCBI BLink).","sp|Q6SZ87|NAT11_ARATH","Nucleobase-ascorbate transporter 11","gi|926641364|ref|XP_013786811.1|",null,null,"x","x",{"v":0.866143445916462,"d":"0.87"},{"v":3.75263154515395,"d":"3.75"},{"v":2.75934999777907,"d":"2.76"},{"v":0.79424621043564,"d":"0.79"}]
["g207.t1"]
["g208.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).","sp|P0C6U3|R1A_CVHN1","Replicase polyprotein 1a","gi|297823363|ref|XP_002879564.1|"]
["g209.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.720347022408495,"d":"0.72"},{"v":0.235742273832681,"d":"0.24"},"X",null,"X"]
["g210.t1",{"$nulls":6},"ARATHwo_AT4G25120.1","Encodes a homolog of the yeast SRS2 (Suppressor of RAD Six-screen mutant 2) helicase. The Arabidopsis SRS2 is a functional 3?- to 5?-helicase. Biochemical studies show that SRS2 disrupts recombinogenic DNA intermediates and facilitates single strand annealing.","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923851487|ref|XP_013704088.1|",{"$nulls":4},{"v":1.15434661326709,"d":"1.15"},{"v":0.991972423714172,"d":"0.99"},{"v":2.89582102870842,"d":"2.90"},{"v":3.37582503748114,"d":"3.38"},null,"X"]
["g211.t1",{"$nulls":15},{"v":0.112399232338661,"d":"0.11"},{"v":0.233933406749722,"d":"0.23"},{"v":3.83436230975133,"d":"3.83"},{"v":0.478344950894628,"d":"0.48"},"X",null,"X"]
["g212.t1",{"$nulls":10},"gi|401880702|gb|EJT45020.1|",{"$nulls":4},{"v":0.0774363148576395,"d":"0.08"},{"v":0.037234036000006,"d":"0.04"},{"v":0.417374010204039,"d":"0.42"},{"v":0,"d":"0.00"},null,"X"]
["g213.t1",{"$nulls":15},{"v":5.66201827541191,"d":"5.66"},{"v":8.51777623219903,"d":"8.52"},{"v":5.49686447107384,"d":"5.50"},{"v":6.42607477228356,"d":"6.43"}]
["g214.t1","0006633:0015994:0006790:0051188:0006520:0034641:0019637:0046148:0006732:0006796:0008299:1901566",16779,9507,"fatty acid biosynthetic process:chlorophyll metabolic process:sulfur compound metabolic process:cofactor biosynthetic process:cellular amino acid metabolic process:cellular nitrogen compound metabolic process:organophosphate metabolic process:pigment biosynthetic process:coenzyme metabolic process:phosphate-containing compound metabolic process:isoprenoid biosynthetic process:organonitrogen compound biosynthetic process","nucleotidyltransferase activity","chloroplast","ARATHwo_AT2G02500.1","Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).","sp|Q5N8G1|ISPD_ORYSJ","2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic","gi|743876297|ref|XP_010907549.1|",null,null,"x","x",{"v":3.50693386949838,"d":"3.51"},{"v":1.52984017397502,"d":"1.53"},{"v":0.791508759163922,"d":"0.79"},{"v":0,"d":"0.00"}]
["g215.t1",{"$nulls":10},"gi|168059844|ref|XP_001781910.1|"]
["g216.t1","0005996:0009697:0009965:0016117:0009853:0010114:0010363:0010200:0045727:0043085:0031348:0050832:0032544:0006098:0009867:0006364:0019288:0009595:0006612:0010027:0006636:0010310:0010218:0009637:0042793:0000272:0009862:0030154:0045893:0035304:0009902:0015995:0000165:0010207:0043900","0003824:0019843:0010297:0050662","0005777:0010319:0009506:0009941:0010287:0005773:0005840:0048046:0016020","monosaccharide metabolic process:salicylic acid biosynthetic process:leaf morphogenesis:carotenoid biosynthetic process:photorespiration:response to red light:regulation of plant-type hypersensitive response:response to chitin:positive regulation of translation:positive regulation of catalytic activity:negative regulation of defense response:defense response to fungus:plastid translation:pentose-phosphate shunt:jasmonic acid mediated signaling pathway:rRNA processing:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:detection of biotic stimulus:protein targeting to membrane:thylakoid membrane organization:unsaturated fatty acid biosynthetic process:regulation of hydrogen peroxide metabolic process:response to far red light:response to blue light:transcription from plastid promoter:polysaccharide catabolic process:systemic acquired resistance, salicylic acid mediated signaling pathway:cell differentiation:positive regulation of transcription, DNA-dependent:regulation of protein dephosphorylation:chloroplast relocation:chlorophyll biosynthetic process:MAPK cascade:photosystem II assembly:regulation of multi-organism process","catalytic activity:rRNA binding:heteropolysaccharide binding:coenzyme binding","peroxisome:stromule:plasmodesma:chloroplast envelope:plastoglobule:vacuole:ribosome:apoplast:membrane","ARATHwo_AT1G09340.1","Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.","sp|Q9SA52|CP41B_ARATH","Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic","gi|168024677|ref|XP_001764862.1|",null,"x","x","x",{"v":313.810314373303,"d":"313.81"},{"v":38.4414073011811,"d":"38.44"},{"v":41.1495588718905,"d":"41.15"},{"v":7.23152850231455,"d":"7.23"}]
["g217.t1",{"$nulls":15},{"v":5.9552043352868,"d":"5.96"},{"v":9.41526806554704,"d":"9.42"},{"v":18.2024033913764,"d":"18.20"},{"v":8.51084085410844,"d":"8.51"},"X",null,"X"]
["g218.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|764628869|ref|XP_011469380.1|",{"$nulls":4},{"v":0.0198784727262918,"d":"0.02"},{"v":0.195045308135617,"d":"0.20"},{"v":0.670681303655422,"d":"0.67"},{"v":0,"d":"0.00"}]
["g219.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|590561554|ref|XP_007008843.1|",{"$nulls":4},{"v":0.281686691449976,"d":"0.28"},{"v":0.067859577453273,"d":"0.07"},{"v":0.203303487933076,"d":"0.20"},{"v":0,"d":"0.00"},null,"X"]
["g220.t1",{"$nulls":15},{"v":0.0281916978931375,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.3146098262257,"d":"0.31"},{"v":0,"d":"0.00"},null,"X","X"]
["g221.t1",{"$nulls":6},"ARATHwo_AT3G10840.1","alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G15490.1); Has 7044 Blast hits to 6961 proteins in 1208 species: Archae - 69; Bacteria - 5119; Metazoa - 311; Fungi - 102; Plants - 308; Viruses - 4; Other Eukaryotes - 1131 (source: NCBI BLink).","sp|B2JQW2|MHPC_BURP8","2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase","gi|802778253|ref|XP_012091098.1|",null,null,"x","x",{"v":3.72229300898575,"d":"3.72"},{"v":7.02872096722222,"d":"7.03"},{"v":5.45588561540309,"d":"5.46"},{"v":0.0437869557921643,"d":"0.04"}]
["g222.t1","0071704:0044763:0044281:0044237",null,44434,"organic substance metabolic process:single-organism cellular process:small molecule metabolic process:cellular metabolic process",null,"chloroplast part","ARATHwo_AT4G32770.1","Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading.","sp|Q94FY7|TOCC_ARATH","Tocopherol cyclase, chloroplastic","gi|302779796|ref|XP_002971673.1|",null,null,"x","x",{"v":6.79368763961792,"d":"6.79"},{"v":23.3638547546631,"d":"23.36"},{"v":13.5680473133994,"d":"13.57"},{"v":3.98211924528598,"d":"3.98"}]
["g223.t1",8152,3824,null,"metabolic process","catalytic activity",null,"ARATHwo_AT5G22620.1","encodes a putative 2-carboxy-D-arabinitol 1-phosphate phosphatase","sp|W5EP13|CA1P_WHEAT","2-carboxy-D-arabinitol-1-phosphatase","gi|729435478|ref|XP_010520410.1|",null,null,"x","x",{"v":4.83496069173965,"d":"4.83"},{"v":2.26435786925575,"d":"2.26"},{"v":2.41053766554274,"d":"2.41"},{"v":2.08628227769261,"d":"2.09"}]
["g224.t1",{"$nulls":6},"ARATHwo_AT1G50300.1","TBP-associated factor 15 (TAF15); FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15B (TAIR:AT5G58470.2); Has 11021 Blast hits to 6677 proteins in 384 species: Archae - 8; Bacteria - 254; Metazoa - 5533; Fungi - 1360; Plants - 1875; Viruses - 14; Other Eukaryotes - 1977 (source: NCBI BLink).","sp|Q9AST1|TAF15_ARATH","Transcription initiation factor TFIID subunit 15","gi|225425084|ref|XP_002273586.1|",null,null,"x","x",{"v":8.51808593806374,"d":"8.52"},{"v":4.96850573521157,"d":"4.97"},{"v":6.27711950276063,"d":"6.28"},{"v":16.5900050686102,"d":"16.59"}]
["g225.t1",{"$nulls":8},"sp|Q99MS4|PRS29_MOUSE","Serine protease 29",{"$nulls":3},"x","x",{"v":1.73018259539165,"d":"1.73"},{"v":0.367849000374361,"d":"0.37"},{"v":0.667472893270918,"d":"0.67"},{"v":0,"d":"0.00"}]
["g226.t1",{"$nulls":6},"ARATHwo_AT5G63190.1","MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 1948 Blast hits to 791 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1230; Fungi - 12; Plants - 571; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).","sp|Q98TX3|PDCD4_CHICK","Programmed cell death protein 4","gi|168049196|ref|XP_001777050.1|",null,null,"x","x",{"v":28.3758808071935,"d":"28.38"},{"v":17.9673152040052,"d":"17.97"},{"v":13.3149589392526,"d":"13.31"},{"v":18.0774774802116,"d":"18.08"}]
["g227.t1",{"$nulls":6},"ARATHwo_AT5G61770.2","PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 1471 Blast hits to 1151 proteins in 223 species: Archae - 0; Bacteria - 34; Metazoa - 730; Fungi - 196; Plants - 73; Viruses - 37; Other Eukaryotes - 401 (source: NCBI BLink).","sp|Q9ASU7|PPAN_ARATH","Peter Pan-like protein","gi|168007194|ref|XP_001756293.1|",{"$nulls":4},{"v":98.8465044324398,"d":"98.85"},{"v":66.1461160378186,"d":"66.15"},{"v":34.8750143604485,"d":"34.88"},{"v":56.26999622628,"d":"56.27"}]
["g228.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.200935319208988,"d":"0.20"},{"v":0.872554427049717,"d":"0.87"},{"v":0.73087268067807,"d":"0.73"},"X"]
["g229.t1",null,"0003676:0000166",null,null,"nucleic acid binding:nucleotide binding",{"$nulls":3},"sp|Q4HZ47|ESF2_GIBZE","Pre-rRNA-processing protein ESF2","gi|168056141|ref|XP_001780080.1|",null,null,"x","x",{"v":11.6863622586043,"d":"11.69"},{"v":18.7448514408989,"d":"18.74"},{"v":9.30013053347385,"d":"9.30"},{"v":29.3325978068749,"d":"29.33"}]
["g229.t2",null,"0003676:0000166",null,null,"nucleic acid binding:nucleotide binding",null,"ARATHwo_AT3G56510.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 528 Blast hits to 522 proteins in 214 species: Archae - 0; Bacteria - 2; Metazoa - 211; Fungi - 183; Plants - 47; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).","sp|O74362|ESF2_SCHPO","Pre-rRNA-processing protein esf2","gi|168056141|ref|XP_001780080.1|",null,null,"x","x",{"v":11.6863622586043,"d":"11.69"},{"v":18.7448514408989,"d":"18.74"},{"v":9.30013053347385,"d":"9.30"},{"v":29.3325978068749,"d":"29.33"}]
["g230.t1","0009653:0080090:0006351:0003006:0008283:0009734:0044710:0009966:0048366:0009738",16740,5737,"anatomical structure morphogenesis:regulation of primary metabolic process:transcription, DNA-dependent:developmental process involved in reproduction:cell proliferation:auxin mediated signaling pathway:single-organism metabolic process:regulation of signal transduction:leaf development:abscisic acid mediated signaling pathway","transferase activity","cytoplasm","ARATHwo_AT5G13680.1","A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1?ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Mutants have no ncm5U (5-carbamoylmethyluridine).","sp|Q9FNA4|ELP1_ARATH","Elongator complex protein 1","gi|302820603|ref|XP_002991968.1|",null,null,"x","x",{"v":1.59390344800282,"d":"1.59"},{"v":4.40219117574038,"d":"4.40"},{"v":2.07547736965986,"d":"2.08"},{"v":2.03727303287096,"d":"2.04"}]
["g231.t1","0007017:0051258:0008152","0005525:0003924","0005737:0005874","microtubule-based process:protein polymerization:metabolic process","GTP binding:GTPase activity","cytoplasm:microtubule","ARATHwo_AT5G05620.1","Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant. Enriched at the post-cytokinetic cell edges in leaves and roots.","sp|Q9D6T1|TBE_MOUSE","Tubulin epsilon chain","gi|302815150|ref|XP_002989257.1|",{"$nulls":4},{"v":0.171866122737198,"d":"0.17"},{"v":0.603116480190973,"d":"0.60"},{"v":0.963586557432285,"d":"0.96"},{"v":0.375181157340444,"d":"0.38"}]
["g232.t1","0006796:0055086",19201,null,"phosphate-containing compound metabolic process:nucleobase-containing small molecule metabolic process","nucleotide kinase activity",null,"ARATHwo_AT3G60180.2","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, uridylate kinase activity, nucleotide kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G26667.3); Has 14052 Blast hits to 13886 proteins in 4941 species: Archae - 98; Bacteria - 9111; Metazoa - 1210; Fungi - 485; Plants - 464; Viruses - 0; Other Eukaryotes - 2684 (source: NCBI BLink).","sp|P00569|KAD1_RABIT","Adenylate kinase isoenzyme 1","gi|302857486|ref|XP_002959884.1|",null,null,"x","x",{"v":0.360511403852175,"d":"0.36"},{"v":1.79578895894507,"d":"1.80"},{"v":43.7439795857575,"d":"43.74"},{"v":0,"d":"0.00"}]
["g233.t1","0006470:0007264:0006913:0006355:0006886","0046872:0004767:0003677:0004722:0003924:0005525","0005634:0005886","protein dephosphorylation:small GTPase mediated signal transduction:nucleocytoplasmic transport:regulation of transcription, DNA-dependent:intracellular protein transport","metal ion binding:sphingomyelin phosphodiesterase activity:DNA binding:protein serine/threonine phosphatase activity:GTPase activity:GTP binding","nucleus:plasma membrane","ARATHwo_AT1G43890.1","ras-related small GTPase","sp|O23657|RABC1_ARATH","Ras-related protein RABC1","gi|302782571|ref|XP_002973059.1|",null,null,"x","x",{"v":17.9448446738738,"d":"17.94"},{"v":20.4795354119627,"d":"20.48"},{"v":8.40385610213944,"d":"8.40"},{"v":3.75559054731703,"d":"3.76"}]
["g234.t1",{"$nulls":6},"ARATHwo_AT4G29270.1","HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 719 Blast hits to 714 proteins in 195 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 0; Plants - 383; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).","sp|P27061|PPA1_SOLLC","Acid phosphatase 1","gi|302768194|ref|XP_002967517.1|",null,null,"x","x",{"v":11.9461478009029,"d":"11.95"},{"v":19.9847569864715,"d":"19.98"},{"v":10.5183122710944,"d":"10.52"},{"v":8.24370402125274,"d":"8.24"}]
["g235.t1",{"$nulls":10},"gi|157875544|ref|XP_001686160.1|",null,null,"x","x",{"v":10.5825060813446,"d":"10.58"},{"v":21.9475341934312,"d":"21.95"},{"v":15.59727098211,"d":"15.60"},{"v":22.1255116598286,"d":"22.13"}]
["g236.t1",{"$nulls":15},{"v":0.201476739771132,"d":"0.20"},{"v":0,"d":"0.00"},{"v":0.0704687831206967,"d":"0.07"},{"v":0.443345904358369,"d":"0.44"}]
["g237.t1"]
["g238.t1","0046777:0030003:0007165:0070838","0009927:0004674:0005524:0004740:0042803",5739,"protein autophosphorylation:cellular cation homeostasis:signal transduction:divalent metal ion transport","histidine phosphotransfer kinase activity:protein serine/threonine kinase activity:ATP binding:pyruvate dehydrogenase (acetyl-transferring) kinase activity:protein homodimerization activity","mitochondrion","ARATHwo_AT3G06483.1","Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1α subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily.","sp|Q9SBJ1|PDK_ARATH","[Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial","gi|302774164|ref|XP_002970499.1|",null,null,"x","x",{"v":32.8126769279822,"d":"32.81"},{"v":9.22859000066946,"d":"9.23"},{"v":7.48738699335773,"d":"7.49"},{"v":16.7559846113486,"d":"16.76"}]
["g239.t1",null,null,5739,null,null,"mitochondrion","ARATHwo_AT3G50590.1","Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 1315 Blast hits to 1225 proteins in 269 species: Archae - 0; Bacteria - 270; Metazoa - 540; Fungi - 221; Plants - 139; Viruses - 13; Other Eukaryotes - 132 (source: NCBI BLink).",null,null,"gi|743832081|ref|XP_010934880.1|",null,null,"x","x",{"v":2.26407551409259,"d":"2.26"},{"v":5.4522740794039,"d":"5.45"},{"v":3.47725912805988,"d":"3.48"},{"v":7.94768962605689,"d":"7.95"}]
["g240.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.246660851860558,"d":"0.25"},{"v":0,"d":"0.00"}]
["g241.t1",{"$nulls":10},"gi|695014451|ref|XP_009394050.1|",null,null,"x","x",{"v":5.43768623370908,"d":"5.44"},{"v":9.36287477275834,"d":"9.36"},{"v":9.44248925515873,"d":"9.44"},{"v":12.0169115038857,"d":"12.02"}]
["g241.t2",{"$nulls":6},"ARATHwo_AT3G19770.1","Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.","sp|Q9LT31|VPS9A_ARATH","Vacuolar protein sorting-associated protein 9A","gi|695014451|ref|XP_009394050.1|",null,null,"x","x",{"v":5.43768623370908,"d":"5.44"},{"v":9.36287477275834,"d":"9.36"},{"v":9.44248925515873,"d":"9.44"},{"v":12.0169115038857,"d":"12.02"}]
["g242.t1",{"$nulls":8},"sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|595451902|gb|EXX59485.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.161943284004823,"d":"0.16"},{"v":0,"d":"0.00"},"X"]
["g243.t1",{"$nulls":6},"ARATHwo_AT1G53770.2","O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G17270.1).",null,null,"gi|565498940|ref|XP_006307109.1|",{"$nulls":4},{"v":0.311452865011722,"d":"0.31"},{"v":0.423511731800943,"d":"0.42"},{"v":0.626119893723782,"d":"0.63"},{"v":0.394565121741653,"d":"0.39"}]
["g244.t1",{"$nulls":15},{"v":0.441590815079889,"d":"0.44"},{"v":0.115722255610525,"d":"0.12"},{"v":15.5198948577155,"d":"15.52"},{"v":0.243415137886231,"d":"0.24"},null,"X","X"]
["g245.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.933360722379233,"d":"0.93"},{"v":0.164128289714086,"d":"0.16"}]
["g246.t1",{"$nulls":13},"x","x",{"v":2.16593395660317,"d":"2.17"},{"v":0.370640005400446,"d":"0.37"},{"v":21.2192180194199,"d":"21.22"},{"v":0.506688540411873,"d":"0.51"}]
["g247.t1",{"$nulls":13},"x","x",{"v":7.07199778413313,"d":"7.07"},{"v":5.24591941036235,"d":"5.25"},{"v":14.3936316899718,"d":"14.39"},{"v":0.508631762817948,"d":"0.51"}]
["g248.t1","0044699:0006355","0043565:0003700",5634,"single-organism process:regulation of transcription, DNA-dependent","sequence-specific DNA binding:sequence-specific DNA binding transcription factor activity","nucleus","ARATHwo_AT3G01470.1","Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.","sp|Q02283|HAT5_ARATH","Homeobox-leucine zipper protein HAT5","gi|685273437|ref|XP_009127760.1|",null,null,"x","x",{"v":0.948340078397914,"d":"0.95"},{"v":6.03104398449995,"d":"6.03"},{"v":19.5195657008131,"d":"19.52"},{"v":0.572798926876321,"d":"0.57"}]
["g249.t1"]
["g250.t1",{"$nulls":19},"X",null,"X"]
["g251.t1"]
["g252.t1"]
["g253.t1"]
["g254.t1",null,5488,null,null,"binding",{"$nulls":5},"gi|313184307|emb|CBL94172.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.056955178490775,"d":"0.06"},{"v":19.439520461209,"d":"19.44"},{"v":0.601099419868453,"d":"0.60"},null,"X"]
["g255.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|O92815|POL_WDSV","Gag-Pol polyprotein","gi|147795669|emb|CAN69982.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.190117133052104,"d":"0.19"},{"v":1.44850293322625,"d":"1.45"},{"v":0.236100244346353,"d":"0.24"},"X"]
["g256.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":5},"gi|659121350|ref|XP_008460615.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.232146653371595,"d":"0.23"},{"v":0.84730450407767,"d":"0.85"},{"v":0.439618943264135,"d":"0.44"},"X"]
["g257.t1",{"$nulls":8},"sp|Q32TF8|EFHC2_DANRE","EF-hand domain-containing family member C2","gi|302780285|ref|XP_002971917.1|",null,null,"x","x",{"v":2.57929975541701,"d":"2.58"},{"v":2.32203071008537,"d":"2.32"},{"v":66.8917676469292,"d":"66.89"},{"v":3.37086233598987,"d":"3.37"}]
["g258.t1",{"$nulls":8},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10",{"$nulls":5},{"v":0.0256068081718024,"d":"0.03"},{"v":0.034405077395456,"d":"0.03"},{"v":0.326574673950722,"d":"0.33"},{"v":0.191512637551481,"d":"0.19"},"X"]
["g259.t1","0019684:0009639:1901701:0046394:0006807:0071310:0071229:0044085:0044765:0007165:0009814:0044238:0016043:0006725:0009719:1901360:0031347",5488,"0042651:0031977:0009523:0009534","photosynthesis, light reaction:response to red or far red light:cellular response to oxygen-containing compound:carboxylic acid biosynthetic process:nitrogen compound metabolic process:cellular response to organic substance:cellular response to acid:cellular component biogenesis:single-organism transport:signal transduction:defense response, incompatible interaction:primary metabolic process:cellular component organization:cellular aromatic compound metabolic process:response to endogenous stimulus:organic cyclic compound metabolic process:regulation of defense response","binding","thylakoid membrane:thylakoid lumen:photosystem II:chloroplast thylakoid","ARATHwo_AT1G06680.1","Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. Phosphorylation of this protein is dependent on calcium.","sp|Q9SLQ8|PSBP_CUCSA","Oxygen-evolving enhancer protein 2, chloroplastic","gi|449460024|ref|XP_004147746.1|",null,"x","x","x",{"v":465.944715650454,"d":"465.94"},{"v":87.193796906428,"d":"87.19"},{"v":44.2995553584582,"d":"44.30"},{"v":0.684873277885425,"d":"0.68"}]
["g260.t1",{"$nulls":8},"sp|P63133|POK8_HUMAN","Endogenous retrovirus group K member 8 Pol protein","gi|923851538|ref|XP_013704108.1|",{"$nulls":8},"X"]
["g261.t1","0044699:0010468:0006396",null,43231,"single-organism process:regulation of gene expression:RNA processing",null,"intracellular membrane-bounded organelle","ARATHwo_AT2G27100.1","Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia.","sp|Q9ZVD0|SRRT_ARATH","Serrate RNA effector molecule","gi|567908113|ref|XP_006446370.1|",null,null,"x","x",{"v":5.74818165764986,"d":"5.75"},{"v":3.74888309918276,"d":"3.75"},{"v":6.26545785548561,"d":"6.27"},{"v":5.77546565932554,"d":"5.78"}]
["g262.t1","0009987:0008152",16740,null,"cellular process:metabolic process","transferase activity",null,"ARATHwo_AT5G53770.1","Nucleotidyltransferase family protein; FUNCTIONS IN: nucleic acid binding, nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT4G00060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8NDF8|PAPD5_HUMAN","Non-canonical poly(A) RNA polymerase PAPD5","gi|168031583|ref|XP_001768300.1|",null,null,"x","x",{"v":9.14699262054819,"d":"9.15"},{"v":6.86430826330246,"d":"6.86"},{"v":18.8285206445084,"d":"18.83"},{"v":14.5235060211244,"d":"14.52"}]
["g263.t1",8152,51536,5739,"metabolic process","iron-sulfur cluster binding","mitochondrion","ARATHwo_AT5G18400.2","Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF689 (InterPro:IPR007785); BEST Arabidopsis thaliana protein match is: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (TAIR:AT5G18362.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|A9PBH9|DRE2_POPTR","Anamorsin homolog","gi|573942975|ref|XP_006653870.1|",null,"x","x","x",{"v":75.0204354873737,"d":"75.02"},{"v":91.8234926823387,"d":"91.82"},{"v":48.5553194188449,"d":"48.56"},{"v":123.118953162232,"d":"123.12"}]
["g264.t1",{"$nulls":13},"x","x",{"v":67.5127986952021,"d":"67.51"},{"v":15.8921967888153,"d":"15.89"},{"v":6.77257949765653,"d":"6.77"},{"v":20.8366203323865,"d":"20.84"}]
["g265.t1",{"$nulls":8},"sp|P75211|P200_MYCPN","Protein P200"]
["g266.t1",null,null,"0016023:0016020",null,null,"cytoplasmic membrane-bounded vesicle:membrane","ARATHwo_AT1G65820.3","microsomal glutathione s-transferase, putative; CONTAINS InterPro DOMAIN/s: Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein (InterPro:IPR001129); Has 388 Blast hits to 388 proteins in 129 species: Archae - 0; Bacteria - 4; Metazoa - 195; Fungi - 88; Plants - 65; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).","sp|O14880|MGST3_HUMAN","Microsomal glutathione S-transferase 3","gi|565362920|ref|XP_006348192.1|",null,"x","x","x",{"v":245.359890261423,"d":"245.36"},{"v":79.9978228505997,"d":"80.00"},{"v":42.8639057171068,"d":"42.86"},{"v":46.884923438204,"d":"46.88"}]
["g267.t1",{"$nulls":15},{"v":0.114529637962332,"d":"0.11"},{"v":0.291847396081147,"d":"0.29"},{"v":0.14607901557296,"d":"0.15"},{"v":0,"d":"0.00"}]
["g268.t1",{"$nulls":13},"x","x",{"v":3.64772705903253,"d":"3.65"},{"v":4.25705852895229,"d":"4.26"},{"v":4.23270400817803,"d":"4.23"},{"v":7.30328254784461,"d":"7.30"}]
["g269.t1",{"$nulls":13},"x","x",{"v":6.51915547564238,"d":"6.52"},{"v":7.71110270615166,"d":"7.71"},{"v":9.84053481020233,"d":"9.84"},{"v":15.1443344113168,"d":"15.14"}]
["g270.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|121501699|gb|ABM55240.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.100557410403533,"d":"0.10"},{"v":0.047909033983077,"d":"0.05"},"X"]
["g271.t1","0090407:0019682:0044255:0046394:0006090:1901606:0051179:0044724:0006996:0042430:0009069:0065007:1901566:0032501",16853,44434,"organophosphate biosynthetic process:glyceraldehyde-3-phosphate metabolic process:cellular lipid metabolic process:carboxylic acid biosynthetic process:pyruvate metabolic process:alpha-amino acid catabolic process:localization:single-organism carbohydrate catabolic process:organelle organization:indole-containing compound metabolic process:serine family amino acid metabolic process:biological regulation:organonitrogen compound biosynthetic process:multicellular organismal process","isomerase activity","chloroplast part","ARATHwo_AT2G21170.1","Encodes a plastidic triose phosphate isomerase. Mutants with reduced pdTPI levels have difficulty transitioning from heterotrophic to autotrophic growth. The related phenotypes, such as chlorosis in light-grown seedlings may result from an accumulation of dihydroxyacetone phosphate (DHAP) and methylglyoxal (MG) in these mutants. Both splice variants appear to be expressed, but the At2g21170.2 variant appears to have a much narrower expression range limited to roots.","sp|Q9SKP6|TPIC_ARATH","Triosephosphate isomerase, chloroplastic","gi|743855199|ref|XP_010941282.1|",{"$nulls":4},{"v":273.759181865383,"d":"273.76"},{"v":117.438997683655,"d":"117.44"},{"v":73.5718517437773,"d":"73.57"},{"v":29.3880767718632,"d":"29.39"}]
["g272.t1",{"$nulls":15},{"v":0.875638577368059,"d":"0.88"},{"v":1.14374166352047,"d":"1.14"},{"v":1.48147126957468,"d":"1.48"},{"v":0.425723156146813,"d":"0.43"},"X",null,"X"]
["g273.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0.0385385647671952,"d":"0.04"},{"v":0.0370651665002553,"d":"0.04"},{"v":0.0906016858151657,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g274.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.165430675189062,"d":"0.17"},{"v":0,"d":"0.00"}]
["g275.t1",{"$nulls":15},{"v":0.149622606657778,"d":"0.15"},{"v":0,"d":"0.00"},{"v":8.5639255243486,"d":"8.56"},{"v":0.792505118625004,"d":"0.79"}]
["g276.t1",{"$nulls":6},"ARATHwo_AT1G01225.1","NC domain-containing protein-related; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT4G00905.1); Has 173 Blast hits to 172 proteins in 34 species: Archae - 0; Bacteria - 24; Metazoa - 5; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).",null,null,"gi|674955103|emb|CDX78683.1|",{"$nulls":4},{"v":0.176991782649156,"d":"0.18"},{"v":0.0341067903163043,"d":"0.03"},{"v":0.167726636025975,"d":"0.17"},{"v":0,"d":"0.00"}]
["g277.t1",{"$nulls":13},"x","x",{"$nulls":5},"X","X"]
["g278.t1",{"$nulls":15},{"v":26.670655143576,"d":"26.67"},{"v":4.54112135312981,"d":"4.54"},{"v":2.79772544261549,"d":"2.80"},{"v":0.192970833493746,"d":"0.19"}]
["g279.t1",{"$nulls":6},"ARATHwo_AT5G01010.2","EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 85 Blast hits to 85 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","sp|Q8R0F9|S14L4_MOUSE","SEC14-like protein 4","gi|698519830|ref|XP_009804785.1|",null,null,"x","x",{"v":2.60349970100313,"d":"2.60"},{"v":1.99819091924069,"d":"2.00"},{"v":2.61620331900719,"d":"2.62"},{"v":1.86011687475276,"d":"1.86"}]
["g280.t1",{"$nulls":13},"x","x",{"v":9.10635675999923,"d":"9.11"},{"v":2.21842726749124,"d":"2.22"},{"v":1.98663962827592,"d":"1.99"},{"v":0.669406403102073,"d":"0.67"}]
["g281.t1",{"$nulls":6},"ARATHwo_AT5G09530.1","The gene encodes a unique protein which contains 36 repeats of a unique pentapeptide (Pro-Glu-Leu|Ile|Val-Pro-Lys). It has been shown tobe involved in growth and development.","sp|Q96AY4|TTC28_HUMAN","Tetratricopeptide repeat protein 28","gi|302814416|ref|XP_002988892.1|",null,null,"x","x",{"v":1.51035595938952,"d":"1.51"},{"v":0.599912730735678,"d":"0.60"},{"v":23.4754732544176,"d":"23.48"},{"v":0.153690373511976,"d":"0.15"}]
["g494.t1","0005983:0019252:0009664:0005977","0043169:0019156","0009569:0009570","starch catabolic process:starch biosynthetic process:plant-type cell wall organization:glycogen metabolic process","cation binding:isoamylase activity","chloroplast starch grain:chloroplast stroma","ARATHwo_AT4G09020.1","Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated.","sp|Q9M0S5|ISOA3_ARATH","Isoamylase 3, chloroplastic","gi|719968911|ref|XP_010266842.1|",null,null,"x","x",{"v":7.04112105929482,"d":"7.04"},{"v":9.28280288738767,"d":"9.28"},{"v":11.5004579678091,"d":"11.50"},{"v":9.26467134749855,"d":"9.26"}]
["g495.t1",{"$nulls":6},"ARATHwo_AT5G44000.1","Glutathione S-transferase family protein; FUNCTIONS IN: glutathione transferase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT4G19880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P42620|YQJG_ECOLI","Glutathionyl-hydroquinone reductase YqjG","gi|168062039|ref|XP_001782991.1|",null,null,"x","x",{"v":11.8621840443318,"d":"11.86"},{"v":12.6433160266149,"d":"12.64"},{"v":6.57063435644868,"d":"6.57"},{"v":1.32276536376058,"d":"1.32"}]
["g496.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.219907576329033,"d":"0.22"},{"v":0.547534063471566,"d":"0.55"},{"v":0.337444879146568,"d":"0.34"},"X",null,"X"]
["g497.t1",{"$nulls":15},{"v":1.88160928633062,"d":"1.88"},{"v":0.105358899231222,"d":"0.11"},{"v":0.763415544251423,"d":"0.76"},{"v":0.544998724075155,"d":"0.54"}]
["g498.t1",{"$nulls":6},"ARATHwo_AT2G01080.1","Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":6.52553441756516,"d":"6.53"},{"v":23.2490246466682,"d":"23.25"},{"v":26.07244505103,"d":"26.07"},{"v":45.0325003046406,"d":"45.03"}]
["g499.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|820139582|gb|KKX10691.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.05191919762328,"d":"0.05"},{"v":0.19509523879399,"d":"0.20"},{"v":0,"d":"0.00"},null,"X"]
["g500.t1",{"$nulls":6},"ARATHwo_AT1G33240.1","Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. Regulates ploidy-dependent cell growth in trichome.","sp|Q9C882|GTL1_ARATH","Trihelix transcription factor GTL1",null,"x",{"$nulls":3},{"v":2.55875536014851,"d":"2.56"},{"v":2.53139076181952,"d":"2.53"},{"v":1.89872060821417,"d":"1.90"},{"v":0.594902486704781,"d":"0.59"}]
["g501.t1",null,"0003676:0000166",null,null,"nucleic acid binding:nucleotide binding",null,"ARATHwo_AT5G12190.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G14870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FMP4|SF3B6_ARATH","Splicing factor 3B subunit 6-like protein","gi|168022469|ref|XP_001763762.1|",null,"x","x","x",{"v":32.2181981234006,"d":"32.22"},{"v":22.6531594601113,"d":"22.65"},{"v":23.4671118727712,"d":"23.47"},{"v":18.7524059977749,"d":"18.75"}]
["g502.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0.351276122707269,"d":"0.35"},{"v":0.521731442277186,"d":"0.52"},{"v":2.51863920009219,"d":"2.52"},{"v":0.70486639100808,"d":"0.70"},"X"]
["g503.t1",{"$nulls":15},{"v":1.00472211242929,"d":"1.00"},{"v":0.898158771680345,"d":"0.90"},{"v":1.14796939796172,"d":"1.15"},{"v":0,"d":"0.00"}]
["g504.t1",{"$nulls":8},"sp|Q32RS7|ATPF_STAPU","ATP synthase subunit b, chloroplastic",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.210414239185893,"d":"0.21"},{"v":0.395851695062903,"d":"0.40"},{"v":0.223193345273484,"d":"0.22"},"X"]
["g505.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0351488906447137,"d":"0.04"},{"v":0.032774115559965,"d":"0.03"},{"v":0,"d":"0.00"}]
["g506.t1",{"$nulls":15},{"v":1.18471509486101,"d":"1.18"},{"v":0.704179484522913,"d":"0.70"},{"v":1.54062449177823,"d":"1.54"},{"v":0,"d":"0.00"}]
["g507.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink)."]
["g508.t1",{"$nulls":15},{"v":0.0490952487819073,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.122444037314643,"d":"0.12"}]
["g509.t1",{"$nulls":19},"X",null,"X"]
["g510.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.132249563022847,"d":"0.13"},{"v":0,"d":"0.00"}]
["g511.t1"]
["g512.t1",{"$nulls":6},"ARATHwo_AT1G43760.1","DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G40390.1); Has 1816 Blast hits to 1744 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 164; Fungi - 4; Plants - 1633; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|141475|sp|P14381.1|YTX2_XENLA",{"$nulls":4},{"v":0.0559539199651171,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0355460594449157,"d":"0.04"}]
["g513.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.276067682844403,"d":"0.28"},"X",null,"X"]
["g514.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.189080634599061,"d":"0.19"},{"v":0,"d":"0.00"}]
["g515.t1"]
["g516.t1",{"$nulls":15},{"v":0.0337449919224806,"d":"0.03"},{"v":0.192672814059313,"d":"0.19"},{"v":0.435486351862025,"d":"0.44"},{"v":0,"d":"0.00"}]
["g517.t1"]
["g518.t1",{"$nulls":15},{"v":0.3094824163394,"d":"0.31"},{"v":0.165883245391499,"d":"0.17"},{"v":0,"d":"0.00"},{"v":0.194694192099919,"d":"0.19"}]
["g519.t1",{"$nulls":15},{"v":0.0280963634763472,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.193407969261105,"d":"0.19"}]
["g520.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0610277446484626,"d":"0.06"},{"v":0.0785781840267827,"d":"0.08"},{"v":0.055634310720844,"d":"0.06"},null,"X"]
["g521.t1",null,16740,"0044464:0016020",null,"transferase activity","cell part:membrane","ARATHwo_AT3G20530.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G18610.2); Has 115048 Blast hits to 113699 proteins in 4223 species: Archae - 109; Bacteria - 13576; Metazoa - 42161; Fungi - 9618; Plants - 32810; Viruses - 348; Other Eukaryotes - 16426 (source: NCBI BLink).","sp|Q9FFW5|PERK8_ARATH","Proline-rich receptor-like protein kinase PERK8","gi|685282144|ref|XP_009131982.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.06431482371365,"d":"0.06"},{"v":0,"d":"0.00"}]
["g522.t1"]
["g523.t1",{"$nulls":15},{"v":0.640703360641104,"d":"0.64"},{"v":0.11718523891083,"d":"0.12"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g524.t1",{"$nulls":15},{"v":2.24044935041563,"d":"2.24"},{"v":0.167039372170128,"d":"0.17"},{"v":0.215348964519977,"d":"0.22"},{"v":0,"d":"0.00"}]
["g525.t1",{"$nulls":6},"ARATHwo_AT5G43720.1","Protein of unknown function (DUF2361); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2361 (InterPro:IPR019310); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2361) (TAIR:AT1G04230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|A5DID3|EFG1P_PICGU","rRNA-processing protein EFG1","gi|747054542|ref|XP_011073482.1|",null,null,"x","x",{"v":4.74096999395221,"d":"4.74"},{"v":5.28112724699208,"d":"5.28"},{"v":4.91365300557913,"d":"4.91"},{"v":1.07255482704308,"d":"1.07"}]
["g526.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|697184899|ref|XP_009601467.1|",{"$nulls":4},{"v":0.12538303971056,"d":"0.13"},{"v":0.141219996426156,"d":"0.14"},{"v":0.172183983628932,"d":"0.17"},{"v":0.248574998733505,"d":"0.25"}]
["g527.t1",{"$nulls":15},{"v":17.0631502175692,"d":"17.06"},{"v":27.216989338721,"d":"27.22"},{"v":28.8028893884596,"d":"28.80"},{"v":4.8127694040694,"d":"4.81"}]
["g528.t1"]
["g529.t1",{"$nulls":20},"X","X"]
["g530.t1"]
["g531.t1",{"$nulls":15},{"v":1.2059642102546,"d":"1.21"},{"v":0,"d":"0.00"},{"v":0.0496808107034707,"d":"0.05"},{"v":0,"d":"0.00"}]
["g532.t1","0010033:0044237",16740,"0016020:0044464","response to organic substance:cellular metabolic process","transferase activity","membrane:cell part","ARATHwo_AT1G52540.1","Protein kinase superfamily protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G15890.1); Has 98543 Blast hits to 97377 proteins in 3831 species: Archae - 68; Bacteria - 11032; Metazoa - 36701; Fungi - 6941; Plants - 30133; Viruses - 293; Other Eukaryotes - 13375 (source: NCBI BLink).","sp|Q9SR05|ANX1_ARATH","Receptor-like protein kinase ANXUR1","gi|110737406|dbj|BAF00647.1|",{"$nulls":4},{"v":0.135425033910931,"d":"0.14"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g533.t1",{"$nulls":20},"X","X"]
["g534.t1"]
["g535.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0759938230458553,"d":"0.08"},{"v":0.256809522630908,"d":"0.26"},{"v":0,"d":"0.00"}]
["g536.t1",{"$nulls":10},"gi|668462812|gb|KFB50281.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0129968996918888,"d":"0.01"},{"v":0.262128434365762,"d":"0.26"},{"v":0.0282096399894911,"d":"0.03"}]
["g536.t2",{"$nulls":6},"ARATHwo_AT4G15880.1","EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.","sp|Q8WP32|SENP5_MACFA","Sentrin-specific protease 5","gi|668462812|gb|KFB50281.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0129968996918888,"d":"0.01"},{"v":0.262128434365762,"d":"0.26"},{"v":0.0282096399894911,"d":"0.03"}]
["g537.t1",{"$nulls":13},"x","x",{"v":1.77952102583598,"d":"1.78"},{"v":3.05357961042363,"d":"3.05"},{"v":3.24824704648878,"d":"3.25"},{"v":4.29387150876396,"d":"4.29"},null,"X","X"]
["g538.t1","0009627:0031347",null,5774,"systemic acquired resistance:regulation of defense response",null,"vacuolar membrane","ARATHwo_AT2G20230.1","Tetraspanin family protein; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT4G28770.2); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","sp|Q93XY5|TET18_ARATH","Tetraspanin-18","gi|727417939|ref|XP_010416099.1|",null,null,"x","x",{"v":5.04956584228859,"d":"5.05"},{"v":6.09103334144305,"d":"6.09"},{"v":5.5502301253409,"d":"5.55"},{"v":11.9088468145986,"d":"11.91"}]
["g539.t1",{"$nulls":13},"x","x",{"v":3.38557166715353,"d":"3.39"},{"v":8.11166883317323,"d":"8.11"},{"v":8.75650308331534,"d":"8.76"},{"v":30.2680414012206,"d":"30.27"}]
["g540.t1","0055114:0006979","0020037:0004601",null,"oxidation-reduction process:response to oxidative stress","heme binding:peroxidase activity",null,"ARATHwo_AT1G77490.1","Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.","sp|Q42593|APXT_ARATH","L-ascorbate peroxidase T, chloroplastic","gi|590599181|ref|XP_007019110.1|",{"$nulls":4},{"v":44.1400120602093,"d":"44.14"},{"v":30.1040499217977,"d":"30.10"},{"v":14.9521852653453,"d":"14.95"},{"v":1.3850436524979,"d":"1.39"}]
["g541.t1",6508,8234,null,"proteolysis","cysteine-type peptidase activity",null,"ARATHwo_AT1G65650.1","UCH2; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578), Ubiquitinyl hydrolase, UCH37 type (InterPro:IPR017390); BEST Arabidopsis thaliana protein match is: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (TAIR:AT5G16310.1); Has 1283 Blast hits to 1275 proteins in 236 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 351; Plants - 143; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).","sp|Q54N38|UCHL5_DICDI","Ubiquitin carboxyl-terminal hydrolase isozyme L5","gi|168004205|ref|XP_001754802.1|",{"$nulls":4},{"v":60.8440430285353,"d":"60.84"},{"v":9.46187618051957,"d":"9.46"},{"v":6.60774763780496,"d":"6.61"},{"v":16.2586457935541,"d":"16.26"}]
["g542.t1"]
["g543.t1","0090304:0044267:0050896:0044710:0050794:0060255:0007049",null,44424,"nucleic acid metabolic process:cellular protein metabolic process:response to stimulus:single-organism metabolic process:regulation of cellular process:regulation of macromolecule metabolic process:cell cycle",null,"intracellular part",{"$nulls":4},"gi|168011101|ref|XP_001758242.1|",null,null,"x","x"]
["g544.t1",6259,3676,"0043231:0044444","DNA metabolic process","nucleic acid binding","intracellular membrane-bounded organelle:cytoplasmic part","ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|242826075|ref|XP_002488568.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.629458369421377,"d":"0.63"},{"v":3.77331345192941,"d":"3.77"},{"v":2.57307114680715,"d":"2.57"},"X"]
["g545.t1","0070918:0035194:0044267:0051301:0048856:0022402:0016043:0050794:0044767:0051704:0032501",null,43229,"production of small RNA involved in gene silencing by RNA:posttranscriptional gene silencing by RNA:cellular protein metabolic process:cell division:anatomical structure development:cell cycle process:cellular component organization:regulation of cellular process:single-organism developmental process:multi-organism process:multicellular organismal process",null,"intracellular organelle","ARATHwo_AT2G04660.1","a highly conserved ubiquitin-protein ligase involved in cell cycle regulation","sp|Q8H1U5|APC2_ARATH","Anaphase-promoting complex subunit 2","gi|168011101|ref|XP_001758242.1|",null,null,"x","x",{"v":1.37338502658018,"d":"1.37"},{"v":1.1662977026771,"d":"1.17"},{"v":2.6069359942658,"d":"2.61"},{"v":2.80262018894958,"d":"2.80"}]
["g546.t1",{"$nulls":6},"ARATHwo_AT5G13760.1","Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT3G04440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q869R1|CTLHB_DICDI","CTL-like protein DDB_G0274487","gi|168058899|ref|XP_001781443.1|",null,null,"x","x",{"v":15.721905682418,"d":"15.72"},{"v":16.2421367371147,"d":"16.24"},{"v":14.9677231840319,"d":"14.97"},{"v":3.18249234055531,"d":"3.18"}]
["g547.t1","0007127:0051276:0007059:0065007:0006281","1901363:0097159",44428,"meiosis I:chromosome organization:chromosome segregation:biological regulation:DNA repair","heterocyclic compound binding:organic cyclic compound binding","nuclear part","ARATHwo_AT4G17380.1","Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.","sp|F4JP48|MSH4_ARATH","DNA mismatch repair protein MSH4","gi|218199622|gb|EEC82049.1|",{"$nulls":4},{"v":0.0543102312280696,"d":"0.05"},{"v":0.13144771141237,"d":"0.13"},{"v":0,"d":"0.00"},{"v":2.99915578304148,"d":"3.00"}]
["g548.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",{"$nulls":3},"sp|P21414|POL_GALV","Pol polyprotein","gi|595484032|gb|EXX71174.1|"]
["g549.t1",{"$nulls":6},"ARATHwo_AT5G15200.1","Ribosomal protein S4; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (TAIR:AT5G39850.1); Has 5786 Blast hits to 5783 proteins in 2880 species: Archae - 264; Bacteria - 571; Metazoa - 422; Fungi - 281; Plants - 3526; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.188003342143536,"d":"0.19"},{"v":0.302804533863826,"d":"0.30"},{"v":0.0816424651352517,"d":"0.08"},null,"X"]
["g550.t1",{"$nulls":13},"x","x",{"v":0.160902922648801,"d":"0.16"},{"v":6.2525127465244,"d":"6.25"},{"v":0.228572423221795,"d":"0.23"},{"v":11.7351555203011,"d":"11.74"}]
["g550.t2",{"$nulls":13},"x","x",{"v":0.160902922648801,"d":"0.16"},{"v":6.2525127465244,"d":"6.25"},{"v":0.228572423221795,"d":"0.23"},{"v":11.7351555203011,"d":"11.74"}]
["g551.t1",{"$nulls":6},"ARATHwo_AT3G58470.1","nucleic acid binding;methyltransferases; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, N-6 adenine-specific, eukaryotic (InterPro:IPR019369), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 287 Blast hits to 287 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 79; Plants - 48; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).","sp|Q9CY45|N6MT2_MOUSE","Protein-lysine N-methyltransferase N6amt2","gi|302819902|ref|XP_002991620.1|",null,null,"x","x",{"v":16.7868949216138,"d":"16.79"},{"v":10.1078864908565,"d":"10.11"},{"v":5.21896756493507,"d":"5.22"},{"v":6.93892449436259,"d":"6.94"}]
["g552.t1","0006511:0000413:0006457:0051726:0009651:0051788:0080129:0009266:0006972:0006833:0007030:0006094:0009853:0046686:0006096","0003755:0005515","0005829:0009506:0005783:0005886","ubiquitin-dependent protein catabolic process:protein peptidyl-prolyl isomerization:protein folding:regulation of cell cycle:response to salt stress:response to misfolded protein:proteasome core complex assembly:response to temperature stimulus:hyperosmotic response:water transport:Golgi organization:gluconeogenesis:photorespiration:response to cadmium ion:glycolysis","peptidyl-prolyl cis-trans isomerase activity:protein binding","cytosol:plasmodesma:endoplasmic reticulum:plasma membrane","ARATHwo_AT2G18040.1","phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds","sp|Q9SL42|PIN1_ARATH","Peptidyl-prolyl cis-trans isomerase Pin1","gi|695069964|ref|XP_009381989.1|",null,null,"x","x",{"v":21.2556448098334,"d":"21.26"},{"v":14.1241982057369,"d":"14.12"},{"v":6.33806838836479,"d":"6.34"},{"v":9.91718441153723,"d":"9.92"}]
["g553.t1"]
["g554.t1",{"$nulls":12},"x","x","x",{"v":11.7216753208239,"d":"11.72"},{"v":37.759760117174,"d":"37.76"},{"v":59.365764451738,"d":"59.37"},{"v":102.47114861277,"d":"102.47"}]
["g555.t1","0016310:0046907:0007165:0015031","0032550:0004672:0032555:0035639",16020,"phosphorylation:intracellular transport:signal transduction:protein transport","purine ribonucleoside binding:protein kinase activity:purine ribonucleotide binding:purine ribonucleoside triphosphate binding","membrane","ARATHwo_AT5G01950.1","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G06840.1); Has 195622 Blast hits to 137374 proteins in 5075 species: Archae - 144; Bacteria - 18537; Metazoa - 60927; Fungi - 10261; Plants - 82888; Viruses - 345; Other Eukaryotes - 22520 (source: NCBI BLink).","sp|Q9LFV3|Y5157_ARATH","Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730","gi|567874101|ref|XP_006429640.1|",{"$nulls":4},{"v":1.09822131029571,"d":"1.10"},{"v":0.486320948314226,"d":"0.49"},{"v":2.78024655455958,"d":"2.78"},{"v":1.59018945742574,"d":"1.59"}]
["g556.t1",{"$nulls":15},{"v":0.0767212609607253,"d":"0.08"},{"v":0.322407408496969,"d":"0.32"},{"v":2.32920615905216,"d":"2.33"},{"v":0.661597054596266,"d":"0.66"},"X",null,"X"]
["g557.t1",{"$nulls":6},"ARATHwo_AT1G55610.1","mutant has Altered vascular cell differentiation; LRR Receptor Kinase","sp|Q9ZWC8|BRL1_ARATH","Serine/threonine-protein kinase BRI1-like 1","gi|720057963|ref|XP_010274130.1|",{"$nulls":4},{"v":0.141861024283051,"d":"0.14"},{"v":1.91704835637592,"d":"1.92"},{"v":2.03738637696987,"d":"2.04"},{"v":2.49578371422372,"d":"2.50"},null,"X"]
["g558.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":3},"sp|P10401|POLY_DROME","Retrovirus-related Pol polyprotein from transposon gypsy","gi|727496944|ref|XP_010424558.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0123757294248503,"d":"0.01"},{"v":0.334305727115337,"d":"0.33"},{"v":0.128495220540714,"d":"0.13"},null,"X"]
["g559.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.051795957578265,"d":"0.05"},{"v":0.106895102713125,"d":"0.11"},{"v":0.362954097904711,"d":"0.36"}]
["g560.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":0.409838295807737,"d":"0.41"},{"v":1.87582095032556,"d":"1.88"},{"v":4.96811311825198,"d":"4.97"},{"v":3.24504756635547,"d":"3.25"},"X"]
["g561.t1","0016310:0007275","0004672:0000166","0043226:0044464","phosphorylation:multicellular organismal development","protein kinase activity:nucleotide binding","organelle:cell part","ARATHwo_AT4G30520.1","Encodes SARK (SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE). Regulates leaf senescence through synergistic actions of auxin and ethylene.","sp|Q8VYT3|Y4052_ARATH","Probable LRR receptor-like serine/threonine-protein kinase At4g30520","gi|115434570|ref|NP_001042043.1|",null,null,"x","x",{"v":0.352897478884732,"d":"0.35"},{"v":0.783858734433325,"d":"0.78"},{"v":4.53676425300877,"d":"4.54"},{"v":6.94322823215411,"d":"6.94"}]
["g562.t1",null,16787,null,null,"hydrolase activity",null,"ARATHwo_AT3G07990.1","serine carboxypeptidase-like 27 (SCPL27); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 26 (TAIR:AT2G35780.1); Has 3547 Blast hits to 3487 proteins in 342 species: Archae - 0; Bacteria - 132; Metazoa - 639; Fungi - 851; Plants - 1534; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink).","sp|Q9SFB5|SCP27_ARATH","Serine carboxypeptidase-like 27","gi|566164782|ref|XP_002305011.2|",{"$nulls":4},{"v":3.08813282833216,"d":"3.09"},{"v":0.986662359796069,"d":"0.99"},{"v":1.75149718377138,"d":"1.75"},{"v":2.24665809925288,"d":"2.25"}]
["g563.t1"]
["g564.t1",30042,3779,15629,"actin filament depolymerization","actin binding","actin cytoskeleton","ARATHwo_AT1G01750.1","actin depolymerizing factor 11 (ADF11); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 8 (TAIR:AT4G00680.1); Has 1654 Blast hits to 1631 proteins in 274 species: Archae - 0; Bacteria - 5; Metazoa - 781; Fungi - 163; Plants - 515; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).","sp|Q7XSN9|ADF6_ORYSJ","Actin-depolymerizing factor 6","gi|302771900|ref|XP_002969368.1|",null,"x","x","x",{"v":219.990749455352,"d":"219.99"},{"v":93.9007689813442,"d":"93.90"},{"v":78.1245951067227,"d":"78.12"},{"v":50.7129501847105,"d":"50.71"}]
["g565.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.148251592387512,"d":"0.15"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g566.t1",{"$nulls":13},"x","x",{"v":0.10059628862883,"d":"0.10"},{"v":0.262742378644266,"d":"0.26"},{"v":0.0338449063523722,"d":"0.03"},{"v":74.722714830629,"d":"74.72"}]
["g567.t1",null,null,"0005634:0005737",null,null,"nucleus:cytoplasm","ARATHwo_AT3G07090.1","PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 872 Blast hits to 872 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 119; Plants - 332; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).","sp|Q6ICB0|DESI1_HUMAN","Desumoylating isopeptidase 1","gi|573920996|ref|XP_006648093.1|",null,null,"x","x",{"v":88.6253599269536,"d":"88.63"},{"v":41.4677730504858,"d":"41.47"},{"v":57.8013473801535,"d":"57.80"},{"v":40.2049504175058,"d":"40.20"}]
["g568.t1",15979,null,"0009538:0009534","photosynthesis",null,"photosystem I reaction center:chloroplast thylakoid","ARATHwo_AT1G31330.1","Encodes subunit F of photosystem I.","sp|P46486|PSAF_FLATR","Photosystem I reaction center subunit III, chloroplastic","gi|168061898|ref|XP_001782922.1|",null,null,"x","x",{"v":323.220286018804,"d":"323.22"},{"v":400.892714873075,"d":"400.89"},{"v":212.497969513168,"d":"212.50"},{"v":2.23743385455405,"d":"2.24"}]
["g569.t1",{"$nulls":15},{"v":0.219575990352579,"d":"0.22"},{"v":0,"d":"0.00"},{"v":0.64770820592228,"d":"0.65"},{"v":0,"d":"0.00"}]
["g570.t1",null,null,9507,null,null,"chloroplast","ARATHwo_AT1G21065.1","unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink).","sp|P0AF48|YJBQ_ECOLI","UPF0047 protein YjbQ","gi|302819196|ref|XP_002991269.1|",{"$nulls":4},{"v":9.19697442730593,"d":"9.20"},{"v":2.447321887337,"d":"2.45"},{"v":11.8125785260506,"d":"11.81"},{"v":10.2474914181473,"d":"10.25"}]
["g571.t1",{"$nulls":15},{"v":2.35900980469888,"d":"2.36"},{"v":1.40822838870116,"d":"1.41"},{"v":1.78814712139199,"d":"1.79"},{"v":5.49935663903219,"d":"5.50"}]
["g572.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.412754482195909,"d":"0.41"},{"v":0,"d":"0.00"}]
["g573.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT2G33170.1","Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1); Has 252347 Blast hits to 139850 proteins in 4875 species: Archae - 176; Bacteria - 22560; Metazoa - 76410; Fungi - 11433; Plants - 110453; Viruses - 462; Other Eukaryotes - 30853 (source: NCBI BLink).","sp|O49318|Y2317_ARATH","Probable leucine-rich repeat receptor-like protein kinase At2g33170","gi|695038856|ref|XP_009406948.1|",null,null,"x","x",{"v":4.12004881218033,"d":"4.12"},{"v":3.82074190890206,"d":"3.82"},{"v":3.50734597370882,"d":"3.51"},{"v":2.05320119856045,"d":"2.05"}]
["g574.t1",{"$nulls":13},"x","x",{"v":0.997149162984105,"d":"1.00"},{"v":1.09523369898104,"d":"1.10"},{"v":6.04872094430902,"d":"6.05"},{"v":1.04419101424143,"d":"1.04"},"X",null,"X"]
["g575.t1",55114,16491,null,"oxidation-reduction process","oxidoreductase activity",null,"ARATHwo_AT1G54870.1","ChlADR is an aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons in vitro. The N-terminal region of this protein directs GFP to the chloroplast where where ChlADR likely helps to maintain the photosynthetic process by detoxifying reactive carbonyls formed during lipid peroxidation. In addition, this enzyme can also reduce cis-3-hexenal, a major plant volatile compound that contributes to green leaf odor, as well as methylglyoxal in vitro.","sp|Q5KTS5|GRDH_DAUCA","Glucose and ribitol dehydrogenase","gi|700202149|gb|KGN57282.1|",null,"x","x","x",{"v":0.672467900240749,"d":"0.67"},{"v":39.585472497328,"d":"39.59"},{"v":0.80597787067446,"d":"0.81"},{"v":548.103317007554,"d":"548.10"}]
["g576.t1","0000097:0006508:1901607","0046872:0008237:0004046","0043231:0044444:0012505","sulfur amino acid biosynthetic process:proteolysis:alpha-amino acid biosynthetic process","metal ion binding:metallopeptidase activity:aminoacylase activity","intracellular membrane-bounded organelle:cytoplasmic part:endomembrane system","ARATHwo_AT4G38220.2","Peptidase M20/M25/M40 family protein; FUNCTIONS IN: hydrolase activity, metallopeptidase activity, aminoacylase activity; INVOLVED IN: response to zinc ion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: Peptidase M20/M25/M40 family protein (TAIR:AT1G44820.1); Has 7219 Blast hits to 7215 proteins in 1775 species: Archae - 179; Bacteria - 5225; Metazoa - 384; Fungi - 290; Plants - 80; Viruses - 2; Other Eukaryotes - 1059 (source: NCBI BLink).","sp|Q55DP8|ACY1_DICDI","Aminoacylase-1","gi|168015878|ref|XP_001760477.1|",{"$nulls":4},{"v":0.856922437549457,"d":"0.86"},{"v":0.95855120309945,"d":"0.96"},{"v":0.534034079955044,"d":"0.53"},{"v":2.9430466813187,"d":"2.94"}]
["g53743.t1","0044710:0044238:0044237:0071704",16614,null,"single-organism metabolic process:primary metabolic process:cellular metabolic process:organic substance metabolic process","oxidoreductase activity, acting on CH-OH group of donors",null,"ARATHwo_AT5G43330.1","predicted to encode a cytosolic malate dehydrogenase.","sp|Q08062|MDHC_MAIZE","Malate dehydrogenase, cytoplasmic","gi|24527967|emb|CAC79550.1|",{"$nulls":4},{"v":0.493037900451849,"d":"0.49"},{"v":0.327300023900259,"d":"0.33"},{"v":1.16844690541129,"d":"1.17"},{"v":0.46383485864061,"d":"0.46"}]
["g53744.t1",{"$nulls":8},"sp|D4A2K4|KLH21_RAT","Kelch-like protein 21",{"$nulls":3},"x","x",{"v":2.29469926916189,"d":"2.29"},{"v":2.03051459202495,"d":"2.03"},{"v":0.46960894038744,"d":"0.47"},{"v":3.9294509049018,"d":"3.93"}]
["g53745.t1",{"$nulls":8},"sp|Q96Q07|BTBD9_HUMAN","BTB/POZ domain-containing protein 9","gi|873240040|emb|CEL93851.1|",null,null,"x","x",{"v":0.360774265200354,"d":"0.36"},{"v":2.18120492776894,"d":"2.18"},{"v":4.29189615939187,"d":"4.29"},{"v":0,"d":"0.00"}]
["g53746.t1",{"$nulls":13},"x","x",{"v":0.722585071688925,"d":"0.72"},{"v":0.505593296627596,"d":"0.51"},{"v":0.280614695674215,"d":"0.28"},{"v":7.21509476593795,"d":"7.22"}]
["g53747.t1",{"$nulls":15},{"v":0.382803355937227,"d":"0.38"},{"v":0.186651719494248,"d":"0.19"},{"v":0.225596725833509,"d":"0.23"},{"v":0.701573528526826,"d":"0.70"}]
["g53748.t1",{"$nulls":6},"ARATHwo_AT3G44880.1","Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.","sp|Q9FYC2|PAO_ARATH","Pheophorbide a oxygenase, chloroplastic","gi|504951870|ref|WP_015138972.1|",{"$nulls":4},{"v":0.037987922592675,"d":"0.04"},{"v":0.0872727967474303,"d":"0.09"},{"v":0.300919550674909,"d":"0.30"},{"v":0.144286456630994,"d":"0.14"}]
["g53749.t1",{"$nulls":13},"x","x",{"v":0.246069369743987,"d":"0.25"},{"v":0.571722623142378,"d":"0.57"},{"v":0.259500270011431,"d":"0.26"},{"v":0.490850538679962,"d":"0.49"}]
["g53750.t1",{"$nulls":15},{"v":0.0887000794545031,"d":"0.09"},{"v":0.244811079847336,"d":"0.24"},{"v":1.07170581349034,"d":"1.07"},{"v":0.848178804309259,"d":"0.85"},"X",null,"X"]
["g53751.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a"]
["g53752.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.220534075806877,"d":"0.22"},{"v":1.2114066506277,"d":"1.21"},{"v":0.393987072114872,"d":"0.39"},"X",null,"X"]
["g53753.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",null,null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|147797863|emb|CAN71937.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.512828252547791,"d":"0.51"},{"v":2.95620174331004,"d":"2.96"},{"v":0.371175803676667,"d":"0.37"},null,"X"]
["g53754.t1",6412,null,null,"translation",null,null,"ARATHwo_AT1G73180.1","Eukaryotic translation initiation factor eIF2A family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-2A (InterPro:IPR011387), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: translation initiation factor 3B1 (TAIR:AT5G27640.1); Has 898 Blast hits to 895 proteins in 262 species: Archae - 0; Bacteria - 8; Metazoa - 280; Fungi - 316; Plants - 125; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).","sp|Q4QRJ7|EIF2A_DANRE","Eukaryotic translation initiation factor 2A","gi|168046455|ref|XP_001775689.1|",null,null,"x","x",{"v":9.956693074815,"d":"9.96"},{"v":5.82105070414957,"d":"5.82"},{"v":3.54960014479714,"d":"3.55"},{"v":3.17233429339702,"d":"3.17"}]
["g53844.t1",{"$nulls":15},{"v":0.125197646852778,"d":"0.13"},{"v":0.255938304907383,"d":"0.26"},{"v":0.778023130358907,"d":"0.78"},{"v":0.103395842210339,"d":"0.10"},"X",null,"X"]
["g53845.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.186379610908758,"d":"0.19"},{"v":0.385546005668191,"d":"0.39"},{"v":0.0924408977342067,"d":"0.09"},"X",null,"X"]
["g53846.t1",{"$nulls":10},"gi|731351600|ref|XP_010687122.1|",{"$nulls":8},"X"]
["g53847.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0942139162970027,"d":"0.09"},{"v":0.249897669123991,"d":"0.25"},{"v":0.066938308478105,"d":"0.07"},"X"]
["g53848.t1",{"$nulls":19},"X",null,"X"]
["g53849.t1",{"$nulls":6},"ARATHwo_AT5G17990.1","Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate.","sp|Q02166|TRPD_ARATH","Anthranilate phosphoribosyltransferase, chloroplastic","gi|406701213|gb|EKD04365.1|",{"$nulls":4},{"v":6.29057396898921,"d":"6.29"},{"v":5.31505825090811,"d":"5.32"},{"v":4.65190149081583,"d":"4.65"},{"v":1.64201406682145,"d":"1.64"},null,"X"]
["g53928.t1"]
["g53929.t1"]
["g53930.t1",{"$nulls":13},"x",null,{"v":1001.67347338289,"d":"1001.67"},{"v":73.3021461488355,"d":"73.30"},{"v":16.1774455836492,"d":"16.18"},{"v":2.71414631634989,"d":"2.71"}]
["g53931.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.11180431241148,"d":"0.11"},{"v":0.738923565906303,"d":"0.74"},{"v":0.138334030584935,"d":"0.14"},null,"X"]
["g53932.t1",{"$nulls":12},"x","x","x",{"v":746.807487560638,"d":"746.81"},{"v":244.870724682029,"d":"244.87"},{"v":42.3116389214491,"d":"42.31"},{"v":2.95046786487965,"d":"2.95"}]
["g53933.t1",{"$nulls":19},"X",null,"X"]
["g53934.t1"]
["g53935.t1",6355,null,16023,"regulation of transcription, DNA-dependent",null,"cytoplasmic membrane-bounded vesicle","ARATHwo_AT1G17880.1","basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).","sp|Q64152|BTF3_MOUSE","Transcription factor BTF3","gi|168062702|ref|XP_001783317.1|",{"$nulls":4},{"v":533.565895072308,"d":"533.57"},{"v":53.9134838398377,"d":"53.91"},{"v":14.7160524142343,"d":"14.72"},{"v":37.8008924062534,"d":"37.80"}]
["g79754.t1",{"$nulls":15},{"v":0.113357689521926,"d":"0.11"},{"v":0.256906778046869,"d":"0.26"},{"v":0.929936008444125,"d":"0.93"},{"v":0.686703333436691,"d":"0.69"},"X",null,"X"]
["g53936.t1",{"$nulls":15},{"v":0.348104911646623,"d":"0.35"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g53937.t2","0044763:0044710:0055081:0055088:0044237:0010033","0016298:0042171",null,"single-organism cellular process:single-organism metabolic process:anion homeostasis:lipid homeostasis:cellular metabolic process:response to organic substance","lipase activity:lysophosphatidic acid acyltransferase activity",{"$nulls":5},"gi|727527394|ref|XP_010439078.1|",null,"x","x","x",{"v":65.5301168278792,"d":"65.53"},{"v":16.0981937227077,"d":"16.10"},{"v":30.9122546117622,"d":"30.91"},{"v":2.66246356536231,"d":"2.66"}]
["g53937.t1","0044763:0044710:0055081:0055088:0044237:0010033","0016298:0042171",null,"single-organism cellular process:single-organism metabolic process:anion homeostasis:lipid homeostasis:cellular metabolic process:response to organic substance","lipase activity:lysophosphatidic acid acyltransferase activity",null,"ARATHwo_AT4G24160.1","Encodes a soluble lysophosphatidic acid acyltransferase with additional triacylglycerol lipase and phosphatidylcholine hydrolyzing enzymatic activities. Plays a pivotal role in maintaining the lipid homeostasis by regulating both phospholipid and neutral lipid levels.","sp|Q0J0A4|LPAAT_ORYSJ","Probable 1-acylglycerol-3-phosphate O-acyltransferase","gi|727527394|ref|XP_010439078.1|",null,"x","x","x",{"v":65.5301168278792,"d":"65.53"},{"v":16.0981937227077,"d":"16.10"},{"v":30.9122546117622,"d":"30.91"},{"v":2.66246356536231,"d":"2.66"}]
["g53938.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3",null,"x"]
["g53939.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8BR93|HARB1_MOUSE","Putative nuclease HARBI1","gi|340382901|ref|XP_003389956.1|",{"$nulls":8},"X"]
["g53940.t1"]
["g53941.t1",{"$nulls":8},"sp|P0DKS7|ARSC2_CORGL","Arsenate-mycothiol transferase ArsC2","gi|501316495|ref|WP_012348130.1|",null,"x","x","x",{"v":26.1289246378399,"d":"26.13"},{"v":9.95261318980199,"d":"9.95"},{"v":8.7640430038245,"d":"8.76"},{"v":23.7955887244594,"d":"23.80"}]
["g53942.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":8},"X"]
["g53943.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":9},"X"]
["g53944.t1",{"$nulls":6},"ARATHwo_AT4G05475.1","RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05470.1).","sp|Q8N1E6|FXL14_HUMAN","F-box/LRR-repeat protein 14",{"$nulls":5},{"v":0.0990055157697927,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0.0523495881134083,"d":"0.05"},{"v":0.093814417277344,"d":"0.09"}]
["g53945.t1",{"$nulls":19},"X",null,"X"]
["g53946.t1",71266,16846,9507,"'de novo' L-methionine biosynthetic process","carbon-sulfur lyase activity","chloroplast","ARATHwo_AT3G57050.1","Encodes second enzyme in the methionine biosynthetic pathway","sp|P53780|METC_ARATH","Cystathionine beta-lyase, chloroplastic","gi|460407544|ref|XP_004249212.1|",null,"x","x","x",{"v":12.9004406247393,"d":"12.90"},{"v":0.385331022160235,"d":"0.39"},{"v":0.284676078646667,"d":"0.28"},{"v":2.20614925239938,"d":"2.21"}]
["g53947.t1",{"$nulls":15},{"v":0.0558386767305797,"d":"0.06"},{"v":0.0589930006716076,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.106238584118913,"d":"0.11"}]
["g53948.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|195357340|ref|XP_002045008.1|",{"$nulls":4},{"v":0.0625181101364816,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.0371654925135659,"d":"0.04"},{"v":0.176951445746699,"d":"0.18"}]
["g53949.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0396480536941373,"d":"0.04"},{"v":0.0409987729359435,"d":"0.04"},{"v":0,"d":"0.00"}]
["g53950.t1",{"$nulls":6},"ARATHwo_AT2G36810.1","ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 392 Blast hits to 295 proteins in 82 species: Archae - 0; Bacteria - 2; Metazoa - 305; Fungi - 6; Plants - 46; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).","sp|F4IP13|SHGR6_ARATH","Protein SHOOT GRAVITROPISM 6","gi|747061628|ref|XP_011077289.1|",null,null,"x","x",{"v":0.717759163033137,"d":"0.72"},{"v":5.12116936986718,"d":"5.12"},{"v":3.76314243759007,"d":"3.76"},{"v":10.5104287825025,"d":"10.51"}]
["g53951.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|32480328|emb|CAE02460.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0542870350607933,"d":"0.05"},{"v":0.333683788033635,"d":"0.33"},{"v":0.369087812214433,"d":"0.37"},"X"]
["g53952.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.129159842083848,"d":"0.13"},{"v":0,"d":"0.00"},"X",null,"X"]
["g53953.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0528694946944308,"d":"0.05"},{"v":0,"d":"0.00"}]
["g53954.t1",{"$nulls":19},"X",null,"X"]
["g53955.t1",{"$nulls":10},"gi|599101080|ref|XP_007381139.1|",{"$nulls":4},{"v":0.0248877070290781,"d":"0.02"},{"v":0.0241261692201727,"d":"0.02"},{"v":0.177404441285117,"d":"0.18"},{"v":0,"d":"0.00"},"X"]
["g53956.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G26150.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q9C660|PEK10_ARATH","Proline-rich receptor-like protein kinase PERK10","gi|115458540|ref|NP_001052870.1|",{"$nulls":4},{"v":2.19324569272008,"d":"2.19"},{"v":5.67450374846936,"d":"5.67"},{"v":1.40728483383587,"d":"1.41"},{"v":0.35146467962815,"d":"0.35"}]
["g53957.t1"]
["g53958.t1"]
["g53959.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0865107268053097,"d":"0.09"},{"v":0,"d":"0.00"},"X",null,"X"]
["g53960.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|861618021|gb|KMQ86727.1|",{"$nulls":4},{"v":0.0517519284307136,"d":"0.05"},{"v":0.0598318089135479,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},null,"X"]
["g53961.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923670483|ref|XP_013650503.1|",{"$nulls":4},{"v":0.631668535511361,"d":"0.63"},{"v":10.5848250810276,"d":"10.58"},{"v":37.2756090799698,"d":"37.28"},{"v":25.9892027921271,"d":"25.99"},"X"]
["g53962.t1",{"$nulls":8},"sp|O92815|POL_WDSV","Gag-Pol polyprotein","gi|341888638|gb|EGT44573.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0280085908757759,"d":"0.03"},{"v":0.0845703901374252,"d":"0.08"},{"v":0,"d":"0.00"},"X"]
["g53963.t1","0007017:0051258:0008152","0005200:0005525:0003924","0005737:0005874","microtubule-based process:protein polymerization:metabolic process","structural constituent of cytoskeleton:GTP binding:GTPase activity","cytoplasm:microtubule","ARATHwo_AT1G50010.1","Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins.","sp|P33629|TBA_PRUDU","Tubulin alpha chain","gi|470127791|ref|XP_004299843.1|",null,"x","x","x",{"v":2.40239858459659,"d":"2.40"},{"v":1.98135032163264,"d":"1.98"},{"v":0.0808528975791833,"d":"0.08"},{"v":24.6429736529518,"d":"24.64"}]
["g79807.t1",{"$nulls":19},"X",null,"X"]
["g53964.t1"]
["g53965.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.538954458092445,"d":"0.54"},{"v":0,"d":"0.00"}]
["g53966.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|731351600|ref|XP_010687122.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0172646869997598,"d":"0.02"},{"v":0.108760346186864,"d":"0.11"},{"v":0.0338065251653163,"d":"0.03"},"X"]
["g53967.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g53968.t1",{"$nulls":10},"gi|743944356|ref|XP_011016699.1|",{"$nulls":8},"X"]
["g577.t1",{"$nulls":8},"sp|Q8K259|GIN1_MOUSE","Gypsy retrotransposon integrase-like protein 1","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.128053852130102,"d":"0.13"},{"v":0.623548349094148,"d":"0.62"},{"v":0.140560824913274,"d":"0.14"},"X"]
["g578.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0.186470857777715,"d":"0.19"},{"v":0.518267576933697,"d":"0.52"},{"v":2.25129444838628,"d":"2.25"},{"v":0.786677382918799,"d":"0.79"},"X"]
["g579.t1",6259,"0046872:0003824",null,"DNA metabolic process","metal ion binding:catalytic activity",{"$nulls":3},"sp|P03363|POL_HTLV2","Gag-Pro-Pol polyprotein","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.204080886835236,"d":"0.20"},{"v":1.08824864770841,"d":"1.09"},{"v":0.545735674432838,"d":"0.55"},null,"X"]
["g580.t1",{"$nulls":15},{"v":0.274526291026961,"d":"0.27"},{"v":0.156618943961406,"d":"0.16"},{"v":0,"d":"0.00"},{"v":0.426327222727999,"d":"0.43"}]
["g581.t1",{"$nulls":15},{"v":0.105052627648732,"d":"0.11"},{"v":0,"d":"0.00"},{"v":0.239101973694069,"d":"0.24"},{"v":0,"d":"0.00"},"X",null,"X"]
["g582.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|P03361|POL_BLVJ","Pol polyprotein","gi|727509438|ref|XP_010430902.1|",{"$nulls":4},{"v":0.0232864685855926,"d":"0.02"},{"v":0.054256985769145,"d":"0.05"},{"v":0.186423793582429,"d":"0.19"},{"v":0,"d":"0.00"},"X"]
["g583.t1",{"$nulls":6},"ARATHwo_AT1G49540.2","elongator protein 2 (ELP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1).","sp|F4I1S7|ELP2_ARATH","Elongator complex protein 2","gi|552846100|ref|XP_005851529.1|",{"$nulls":4},{"v":0.549162209605727,"d":"0.55"},{"v":2.16363729558687,"d":"2.16"},{"v":3.63981553807234,"d":"3.64"},{"v":1.83191953623097,"d":"1.83"},null,"X"]
["g584.t1",{"$nulls":6},"ARATHwo_AT2G33550.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3",null,"x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0.0681507915285873,"d":"0.07"},{"v":0.0657357766689183,"d":"0.07"},{"v":0,"d":"0.00"}]
["g585.t1",{"$nulls":13},"x","x",{"v":2.54994398535409,"d":"2.55"},{"v":1.64603253651891,"d":"1.65"},{"v":1.76005917725706,"d":"1.76"},{"v":0.438129173235996,"d":"0.44"}]
["g586.t1","0010103:0045490:0010468:0046777:0007169:0002237:0010102:0045087:0048443","0004674:0005524",5886,"stomatal complex morphogenesis:pectin catabolic process:regulation of gene expression:protein autophosphorylation:transmembrane receptor protein tyrosine kinase signaling pathway:response to molecule of bacterial origin:lateral root morphogenesis:innate immune response:stamen development","protein serine/threonine kinase activity:ATP binding","plasma membrane","ARATHwo_AT1G68690.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q9SX31|PERK9_ARATH","Proline-rich receptor-like protein kinase PERK9","gi|727460435|ref|XP_010512057.1|",null,null,"x","x",{"v":2.492979177518,"d":"2.49"},{"v":1.44927752069496,"d":"1.45"},{"v":1.54966356449209,"d":"1.55"},{"v":0.359092890515953,"d":"0.36"}]
["g587.t1"]
["g588.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",{"$nulls":3},"x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0821686310693851,"d":"0.08"},{"v":0,"d":"0.00"}]
["g589.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|675374083|gb|KFM66985.1|",{"$nulls":8},"X"]
["g590.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0317236906299761,"d":"0.03"},{"v":0.0434254611246397,"d":"0.04"},{"v":0.124990563910786,"d":"0.12"},"X",null,"X"]
["g591.t1",{"$nulls":13},"x","x",{"v":4.39839737333631,"d":"4.40"},{"v":3.83303459386102,"d":"3.83"},{"v":1.22051795005466,"d":"1.22"},{"v":9.95054437053652,"d":"9.95"}]
["g592.t1",{"$nulls":15},{"v":1.47022119756189,"d":"1.47"},{"v":0.906685917711252,"d":"0.91"},{"v":0.811986742147223,"d":"0.81"},{"v":1.3896520152108,"d":"1.39"}]
["g593.t1",{"$nulls":6},"ARATHwo_AT4G30640.1","RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: SKP1 interacting partner 1 (TAIR:AT5G57900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P24814|GRR1_YEAST","SCF E3 ubiquitin ligase complex F-box protein GRR1",{"$nulls":5},{"v":0.505796545523978,"d":"0.51"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g594.t1","0006006:0055114","0016620:0051287:0050661",9507,"glucose metabolic process:oxidation-reduction process","oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor:NAD binding:NADP binding","chloroplast","ARATHwo_AT1G79530.1","Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.","sp|Q9SAJ6|G3PP1_ARATH","Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic","gi|493968252|ref|WP_006911516.1|",{"$nulls":4},{"v":12.0734443047672,"d":"12.07"},{"v":19.1871569216249,"d":"19.19"},{"v":2.94061194328782,"d":"2.94"},{"v":12.132113302944,"d":"12.13"}]
["g595.t1",{"$nulls":6},"ARATHwo_AT3G12570.1","FYD; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT2G37570.1); Has 108 Blast hits to 106 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|168064921|ref|XP_001784406.1|"]
["g596.t1",{"$nulls":10},"gi|566192003|ref|XP_006378719.1|",{"$nulls":4},{"v":1.99507525855874,"d":"2.00"},{"v":3.56000533098308,"d":"3.56"},{"v":2.25203521010459,"d":"2.25"},{"v":2.00967335438921,"d":"2.01"}]
["g597.t1",{"$nulls":15},{"v":0.0449606813246001,"d":"0.04"},{"v":0.497693245347994,"d":"0.50"},{"v":0.0888493917454381,"d":"0.09"},{"v":0,"d":"0.00"}]
["g598.t1"]
["g599.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|675892324|ref|XP_009031664.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.15634156374827,"d":"0.16"},{"v":0,"d":"0.00"}]
["g600.t1","0006457:0009408","0046872:0031072:0005524:0051082",null,"protein folding:response to heat","metal ion binding:heat shock protein binding:ATP binding:unfolded protein binding",null,"ARATHwo_AT2G22360.1","DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT4G39960.1); Has 29493 Blast hits to 29023 proteins in 3518 species: Archae - 206; Bacteria - 11054; Metazoa - 4574; Fungi - 2545; Plants - 2863; Viruses - 57; Other Eukaryotes - 8194 (source: NCBI BLink).","sp|B8HLD2|DNAJ_CYAP4","Chaperone protein DnaJ","gi|168029917|ref|XP_001767471.1|",null,null,"x","x",{"v":43.9257828858242,"d":"43.93"},{"v":2.45122628237412,"d":"2.45"},{"v":2.02485985883709,"d":"2.02"},{"v":2.16042829259059,"d":"2.16"}]
["g601.t1",{"$nulls":6},"ARATHwo_AT5G41390.1","PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT1G63830.3); Has 13062 Blast hits to 6664 proteins in 566 species: Archae - 6; Bacteria - 1689; Metazoa - 5021; Fungi - 1579; Plants - 2851; Viruses - 338; Other Eukaryotes - 1578 (source: NCBI BLink).",null,null,"gi|728833075|gb|KHG12518.1|",{"$nulls":4},{"v":9.63822653845828,"d":"9.64"},{"v":13.2944836715904,"d":"13.29"},{"v":15.4240256757205,"d":"15.42"},{"v":5.07133855495612,"d":"5.07"}]
["g602.t1",{"$nulls":6},"ARATHwo_AT1G50900.1","Encodes GDC1 (Grana Deficient Chloroplast 1), an ankyrin domain containing protein required fro chloroplast thylakoid grana formation.","sp|Q8VY88|LTD_ARATH","Protein LHCP TRANSLOCATION DEFECT","gi|302781252|ref|XP_002972400.1|",null,"x","x","x",{"v":8.23733633819649,"d":"8.24"},{"v":8.29145354845151,"d":"8.29"},{"v":6.41802947109487,"d":"6.42"},{"v":0,"d":"0.00"}]
["g603.t1","0009628:0006950",null,null,"response to abiotic stimulus:response to stress",{"$nulls":6},"gi|255568954|ref|XP_002525447.1|",{"$nulls":4},{"v":4.71109741571378,"d":"4.71"},{"v":7.31109061159556,"d":"7.31"},{"v":6.9013888744588,"d":"6.90"},{"v":4.39978308666709,"d":"4.40"}]
["g603.t2","0009628:0006950",null,null,"response to abiotic stimulus:response to stress",null,null,"ARATHwo_AT2G23840.1","HNH endonuclease; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); Has 4176 Blast hits to 4176 proteins in 656 species: Archae - 6; Bacteria - 1679; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 29; Other Eukaryotes - 2425 (source: NCBI BLink).",null,null,"gi|255568954|ref|XP_002525447.1|",{"$nulls":4},{"v":4.71109741571378,"d":"4.71"},{"v":7.31109061159556,"d":"7.31"},{"v":6.9013888744588,"d":"6.90"},{"v":4.39978308666709,"d":"4.40"}]
["g604.t1",{"$nulls":8},"sp|P30866|YAFE_ECOLI","Uncharacterized protein YafE","gi|403353780|gb|EJY76435.1|",null,null,"x","x",{"v":24.4541272323282,"d":"24.45"},{"v":11.5698122327729,"d":"11.57"},{"v":17.7033977748195,"d":"17.70"},{"v":5.2986580188609,"d":"5.30"}]
["g605.t1","0032199:0000737","0003964:0005515:0009036",null,"reverse transcription involved in RNA-mediated transposition:DNA catabolic process, endonucleolytic","RNA-directed DNA polymerase activity:protein binding:Type II site-specific deoxyribonuclease activity",{"$nulls":3},"sp|P16423|POLR_DROME","Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM","gi|126296|sp|P08548.1|LIN1_NYCCO",{"$nulls":4},{"v":0.107840202545009,"d":"0.11"},{"v":0.407644934273078,"d":"0.41"},{"v":0.687654979505157,"d":"0.69"},{"v":0.612046924076292,"d":"0.61"}]
["g606.t1",{"$nulls":20},"X","X"]
["g607.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.065230017170147,"d":"0.07"},{"v":0.363296810118979,"d":"0.36"},{"v":0,"d":"0.00"},"X",null,"X"]
["g608.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|384490483|gb|EIE81705.1|",{"$nulls":8},"X"]
["g609.t1",{"$nulls":6},"ARATHwo_AT1G43760.1","DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G40390.1); Has 1816 Blast hits to 1744 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 164; Fungi - 4; Plants - 1633; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|642024080|emb|CDQ95089.1|"]
["g610.t1"]
["g611.t1"]
["g612.t1",{"$nulls":6},"ARATHwo_AT1G23360.1","Encodes a 2-phytyl-1,4-naphthoquinone methyltransferase that catalyzes the final step in phylloquinone (vitamin K1) biosynthesis.","sp|Q9HBK9|AS3MT_HUMAN","Arsenite methyltransferase","gi|492333745|ref|WP_005812925.1|",{"$nulls":4},{"v":15.6852000644716,"d":"15.69"},{"v":6.62050957789438,"d":"6.62"},{"v":2.25552224562202,"d":"2.26"},{"v":0.514840962847621,"d":"0.51"}]
["g613.t1",{"$nulls":8},"sp|Q91WU5|AS3MT_MOUSE","Arsenite methyltransferase","gi|403353780|gb|EJY76435.1|",{"$nulls":4},{"v":1.90268411729202,"d":"1.90"},{"v":0.732890960421502,"d":"0.73"},{"v":2.06839003791298,"d":"2.07"},{"v":10.2985750329423,"d":"10.30"}]
["g614.t1",{"$nulls":15},{"v":0.300720848721836,"d":"0.30"},{"v":0.490209978959059,"d":"0.49"},{"v":4.26355905252286,"d":"4.26"},{"v":0.0876585871543449,"d":"0.09"}]
["g615.t1",{"$nulls":10},"gi|302816722|ref|XP_002990039.1|"]
["g616.t1",{"$nulls":6},"ARATHwo_AT1G21410.1","AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.","sp|Q9LPL4|SKP2A_ARATH","F-box protein SKP2A"]
["g617.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0.459889628725035,"d":"0.46"},{"v":0.370262191495125,"d":"0.37"},{"v":0.175533882515931,"d":"0.18"},{"v":0,"d":"0.00"},null,"X"]
["g618.t1",null,null,"0016020:0005773",null,null,"membrane:vacuole","ARATHwo_AT5G40670.1","PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Lysosomal cystine transporter (InterPro:IPR005282); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P57758|CTNS_ARATH","Cystinosin homolog","gi|302762250|ref|XP_002964547.1|",null,null,"x","x",{"v":16.1030601175667,"d":"16.10"},{"v":10.1346079428224,"d":"10.13"},{"v":15.7842140793639,"d":"15.78"},{"v":8.04301410403811,"d":"8.04"}]
["g619.t1",{"$nulls":10},"gi|751697269|gb|KIM47247.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.054850007902204,"d":"0.05"},{"v":0.114703518080488,"d":"0.11"},{"v":0,"d":"0.00"},"X"]
["g620.t1"]
["g621.t1"]
["g622.t1"]
["g623.t1",{"$nulls":8},"sp|P19558|GAG_BIV29","Gag polyprotein"]
["g624.t1",{"$nulls":15},{"v":0.0410368819354263,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.077890283699414,"d":"0.08"}]
["g625.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|731374272|ref|XP_010666916.1|",{"$nulls":9},"X"]
["g626.t1",{"$nulls":8},"sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab"]
["g627.t1",{"$nulls":6},"ARATHwo_AT3G19553.1","Encodes POLYAMINE UPTAKE TRANSPORTER 5, an amino acid permease family protein.","sp|Q92536|YLAT2_HUMAN","Y+L amino acid transporter 2","gi|910330291|ref|XP_013168437.1|",null,null,"x","x",{"v":5.13139869543657,"d":"5.13"},{"v":6.39679331715947,"d":"6.40"},{"v":3.64268162034781,"d":"3.64"},{"v":2.38308949057319,"d":"2.38"}]
["g628.t1"]
["g629.t1",{"$nulls":6},"ARATHwo_AT3G17910.1","Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly.","sp|Q9SE51|SURF1_ARATH","Surfeit locus protein 1","gi|567908119|ref|XP_006446373.1|",{"$nulls":4},{"v":0.0972669374477821,"d":"0.10"},{"v":0.101627477761024,"d":"0.10"},{"v":0.115278958158564,"d":"0.12"},{"v":0.230291471284572,"d":"0.23"}]
["g630.t1"]
["g631.t1","0044260:0006950:0044238",null,null,"cellular macromolecule metabolic process:response to stress:primary metabolic process",null,null,"ARATHwo_AT1G56345.1","Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224); Has 16985 Blast hits to 16836 proteins in 2654 species: Archae - 12; Bacteria - 12887; Metazoa - 225; Fungi - 200; Plants - 183; Viruses - 0; Other Eukaryotes - 3478 (source: NCBI BLink).","sp|Q2QNM3|PUS1_ORYSJ","RNA pseudouridine synthase 1","gi|670383150|ref|XP_008672357.1|",{"$nulls":4},{"v":0.750860884901079,"d":"0.75"},{"v":3.30017046791203,"d":"3.30"},{"v":2.5232656000487,"d":"2.52"},{"v":0.187343353986034,"d":"0.19"}]
["g632.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.409997688052392,"d":"0.41"},{"v":0,"d":"0.00"},"X"]
["g633.t1",{"$nulls":6},"ARATHwo_AT3G19590.1","Encodes a protein that may have a role in the spindle assembly checkpoint.","sp|Q9LJN8|BUB31_ARATH","Mitotic checkpoint protein BUB3.1","gi|116780654|gb|ABK21756.1|",null,null,"x","x",{"v":3.53299820978424,"d":"3.53"},{"v":5.38082115841307,"d":"5.38"},{"v":4.15395574384856,"d":"4.15"},{"v":3.53304038472064,"d":"3.53"}]
["g634.t2"]
["g634.t1"]
["g635.t1",{"$nulls":13},"x","x",{"v":7.46819643336253,"d":"7.47"},{"v":14.1782579242592,"d":"14.18"},{"v":4.93059919659752,"d":"4.93"},{"v":6.40193707616557,"d":"6.40"}]
["g636.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|340377501|ref|XP_003387268.1|",{"$nulls":9},"X"]
["g637.t1",{"$nulls":8},"sp|Q18DN4|HMU_HALWD","Halomucin"]
["g638.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).",null,null,"gi|255549507|ref|XP_002515806.1|","x"]
["g639.t1"]
["g640.t1","0044763:0043170:0044262:0044723",16798,9536,"single-organism cellular process:macromolecule metabolic process:cellular carbohydrate metabolic process:single-organism carbohydrate metabolic process","hydrolase activity, acting on glycosyl bonds","plastid","ARATHwo_AT2G39930.1","Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.","sp|O04196|ISOA1_ARATH","Isoamylase 1, chloroplastic","gi|902203164|gb|KNA14482.1|",{"$nulls":4},{"v":2.72061523158555,"d":"2.72"},{"v":6.80906944604181,"d":"6.81"},{"v":9.11457585717493,"d":"9.11"},{"v":9.34757867118269,"d":"9.35"}]
["g641.t1",{"$nulls":15},{"v":5.36958957042591,"d":"5.37"},{"v":28.3414446796633,"d":"28.34"},{"v":95.4210878982376,"d":"95.42"},{"v":50.1034984653598,"d":"50.10"},"X",null,"X"]
["g642.t1",{"$nulls":6},"ARATHwo_AT2G44870.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|302810020|ref|XP_002986702.1|",null,"x","x","x",{"v":31.9646606209895,"d":"31.96"},{"v":10.0869258489025,"d":"10.09"},{"v":3.97906881280254,"d":"3.98"},{"v":37.7830919627935,"d":"37.78"}]
["g643.t1",null,16798,null,null,"hydrolase activity, acting on glycosyl bonds",null,"ARATHwo_AT1G27520.1","Glycosyl hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 47 protein (TAIR:AT5G43710.1); Has 2179 Blast hits to 1853 proteins in 199 species: Archae - 0; Bacteria - 11; Metazoa - 788; Fungi - 990; Plants - 198; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).","sp|Q6GQB9|EDEM3_XENLA","ER degradation-enhancing alpha-mannosidase-like protein 3","gi|922364627|ref|XP_013454577.1|",null,null,"x","x",{"v":21.2552445514455,"d":"21.26"},{"v":18.1407766357911,"d":"18.14"},{"v":6.91237993846379,"d":"6.91"},{"v":7.50728918153601,"d":"7.51"}]
["g643.t2",null,16798,5739,null,"hydrolase activity, acting on glycosyl bonds","mitochondrion","ARATHwo_AT1G51590.1","Encodes an alpha-mannosidase I enzyme responsible for N-glycan maturation.","sp|Q9C512|MNS1_ARATH","Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1","gi|548848355|gb|ERN07458.1|",{"$nulls":4},{"v":21.2552445514455,"d":"21.26"},{"v":18.1407766357911,"d":"18.14"},{"v":6.91237993846379,"d":"6.91"},{"v":7.50728918153601,"d":"7.51"}]
["g644.t1",{"$nulls":6},"ARATHwo_AT2G38570.1","CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits to 300 proteins in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).",null,null,"gi|629084336|gb|KCW50693.1|",{"$nulls":4},{"v":7.95071757262384,"d":"7.95"},{"v":4.45617763313314,"d":"4.46"},{"v":2.05840281357424,"d":"2.06"},{"v":3.01294568352869,"d":"3.01"}]
["g645.t1","0044710:0006259:0051276:0005975:0007059:0033043:0007127",null,null,"single-organism metabolic process:DNA metabolic process:chromosome organization:carbohydrate metabolic process:chromosome segregation:regulation of organelle organization:meiosis I",{"$nulls":6},"gi|168046944|ref|XP_001775932.1|",null,"x","x","x",{"v":10.1371698559748,"d":"10.14"},{"v":4.68012266457556,"d":"4.68"},{"v":6.80450573140794,"d":"6.80"},{"v":4.04488567540888,"d":"4.04"}]
["g645.t2","0044710:0006259:0051276:0005975:0007059:0033043:0007127",null,null,"single-organism metabolic process:DNA metabolic process:chromosome organization:carbohydrate metabolic process:chromosome segregation:regulation of organelle organization:meiosis I",null,null,"ARATHwo_AT5G08450.1","CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).","sp|O94707|RXT3_SCHPO","Transcriptional regulatory protein rxt3","gi|168046944|ref|XP_001775932.1|",null,"x","x","x",{"v":10.1371698559748,"d":"10.14"},{"v":4.68012266457556,"d":"4.68"},{"v":6.80450573140794,"d":"6.80"},{"v":4.04488567540888,"d":"4.04"}]
["g645.t3","0050896:0045132:0048856:0033044:0034645:0000723:0006464:0032501:0007127:0045491:0044723",null,null,"response to stimulus:meiotic chromosome segregation:anatomical structure development:regulation of chromosome organization:cellular macromolecule biosynthetic process:telomere maintenance:cellular protein modification process:multicellular organismal process:meiosis I:xylan metabolic process:single-organism carbohydrate metabolic process",{"$nulls":6},"gi|168046944|ref|XP_001775932.1|",null,null,"x",null,{"v":10.1371698559748,"d":"10.14"},{"v":4.68012266457556,"d":"4.68"},{"v":6.80450573140794,"d":"6.80"},{"v":4.04488567540888,"d":"4.04"}]
["g646.t1"]
["g647.t2",{"$nulls":15},{"v":0.0865793698657426,"d":"0.09"},{"v":0.0642857231907027,"d":"0.06"},{"v":0.338686563059864,"d":"0.34"},{"v":0.0579375331460293,"d":"0.06"}]
["g647.t1",{"$nulls":15},{"v":0.0865793698657426,"d":"0.09"},{"v":0.0642857231907027,"d":"0.06"},{"v":0.338686563059864,"d":"0.34"},{"v":0.0579375331460293,"d":"0.06"}]
["g648.t1"]
["g649.t1",{"$nulls":19},"X",null,"X"]
["g650.t1",{"$nulls":10},"gi|916867211|ref|WP_051474267.1|",{"$nulls":4},{"v":16.075554537685,"d":"16.08"},{"v":9.24944051363458,"d":"9.25"},{"v":5.86112704261625,"d":"5.86"},{"v":1.55383257962924,"d":"1.55"}]
["g651.t1",{"$nulls":13},"x","x",{"v":1.07393207855081,"d":"1.07"},{"v":23.2754655258566,"d":"23.28"},{"v":10.4082586580412,"d":"10.41"},{"v":6.80461635544428,"d":"6.80"}]
["g652.t1",{"$nulls":13},"x","x",{"v":0.828531664051288,"d":"0.83"},{"v":34.8016777729469,"d":"34.80"},{"v":7.88794580322172,"d":"7.89"},{"v":12.2592691314652,"d":"12.26"}]
["g653.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.85799412257995,"d":"0.86"},{"v":0.891906483330703,"d":"0.89"},{"v":0.400966793087868,"d":"0.40"}]
["g654.t1",{"$nulls":8},"sp|Q5BK01|MET24_RAT","Methyltransferase-like protein 24","gi|545374651|ref|XP_005651584.1|",null,null,"x","x",{"v":6.46095642308291,"d":"6.46"},{"v":15.8332689839925,"d":"15.83"},{"v":7.60083721046089,"d":"7.60"},{"v":3.93388924533679,"d":"3.93"}]
["g655.t1",{"$nulls":15},{"v":4.59643112545254,"d":"4.60"},{"v":6.54246322248443,"d":"6.54"},{"v":4.37726951594742,"d":"4.38"},{"v":1.65989507526721,"d":"1.66"}]
["g656.t1",{"$nulls":10},"gi|225593151|gb|ACN96069.1|",{"$nulls":4},{"v":33.3875065499444,"d":"33.39"},{"v":10.4249559752899,"d":"10.42"},{"v":3.05541561103611,"d":"3.06"},{"v":0.329611428738198,"d":"0.33"}]
["g657.t1",{"$nulls":15},{"v":0.0582359108600121,"d":"0.06"},{"v":0.0281577265767685,"d":"0.03"},{"v":0.0932210523621667,"d":"0.09"},{"v":0.0724926406487287,"d":"0.07"},"X",null,"X"]
["g658.t1","0009113:0009116:0006189","0051536:0046872:0004044",null,"purine nucleobase biosynthetic process:nucleoside metabolic process:'de novo' IMP biosynthetic process","iron-sulfur cluster binding:metal ion binding:amidophosphoribosyltransferase activity",null,"ARATHwo_AT2G16570.1","Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis","sp|Q9SI61|ASE1_ARATH","Amidophosphoribosyltransferase 1, chloroplastic","gi|148907413|gb|ABR16840.1|",null,null,"x","x",{"v":7.74113887015002,"d":"7.74"},{"v":1.89916254560157,"d":"1.90"},{"v":2.15604076987384,"d":"2.16"},{"v":1.92498401440727,"d":"1.92"}]
["g659.t1",{"$nulls":15},{"v":3.30715192378431,"d":"3.31"},{"v":10.1000388660109,"d":"10.10"},{"v":16.8464080165015,"d":"16.85"},{"v":23.1211335864249,"d":"23.12"}]
["g660.t1",{"$nulls":15},{"v":4.4167066586412,"d":"4.42"},{"v":1.9293946125371,"d":"1.93"},{"v":0.774775314746974,"d":"0.77"},{"v":0.599436809372804,"d":"0.60"}]
["g661.t1",{"$nulls":15},{"v":3.29904100608065,"d":"3.30"},{"v":10.6134097249431,"d":"10.61"},{"v":7.21108723978025,"d":"7.21"},{"v":10.3978436614311,"d":"10.40"},null,"X","X"]
["g662.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.255888539372591,"d":"0.26"},{"v":0.354794161971055,"d":"0.35"},{"v":0,"d":"0.00"}]
["g663.t1",16310,"0004672:0000166",null,"phosphorylation","protein kinase activity:nucleotide binding",null,"ARATHwo_AT1G73690.1","cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation.","sp|P29620|CDKD1_ORYSJ","Cyclin-dependent kinase D-1","gi|302785291|ref|XP_002974417.1|",null,null,"x","x",{"v":6.71037135737697,"d":"6.71"},{"v":2.06550203599355,"d":"2.07"},{"v":2.75896714654999,"d":"2.76"},{"v":9.59901264193818,"d":"9.60"}]
["g664.t1"]
["g665.t1",{"$nulls":13},"x","x",{"v":1.9227780270369,"d":"1.92"},{"v":72.3866574753518,"d":"72.39"},{"v":7.70975971388988,"d":"7.71"},{"v":0.538610697190291,"d":"0.54"}]
["g666.t1"]
["g667.t1",{"$nulls":15},{"v":0.222619906285705,"d":"0.22"},{"v":0.175375225353876,"d":"0.18"},{"v":0.0953217005041793,"d":"0.10"},{"v":1.65891028370631,"d":"1.66"}]
["g668.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|923854260|ref|XP_013704502.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0272370076553267,"d":"0.03"},{"v":0.226033646442687,"d":"0.23"},{"v":0,"d":"0.00"},"X"]
["g669.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|727509438|ref|XP_010430902.1|",{"$nulls":4},{"v":1.67065138377583,"d":"1.67"},{"v":0.776107171308903,"d":"0.78"},{"v":0.541406160215835,"d":"0.54"},{"v":0.279381245444517,"d":"0.28"},null,"X"]
["g670.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0729752528050833,"d":"0.07"},{"v":0.198553093022333,"d":"0.20"},{"v":0,"d":"0.00"},null,"X","X"]
["g671.t1",44763,null,null,"single-organism cellular process",{"$nulls":4},"sp|Q92I60|MURD_RICCN","UDP-N-acetylmuramoylalanine--D-glutamate ligase","gi|168039117|ref|XP_001772045.1|",null,null,"x","x",{"v":1.3180873142557,"d":"1.32"},{"v":0.926643779926783,"d":"0.93"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g672.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923518378|ref|XP_013656989.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.813696072706593,"d":"0.81"},{"v":0.202594028821964,"d":"0.20"},{"v":0.0575187346032633,"d":"0.06"},"X"]
["g673.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|646722767|gb|KDR23651.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.175759763812222,"d":"0.18"},{"v":0.648481043419498,"d":"0.65"},{"v":0.0942631569350543,"d":"0.09"},null,"X"]
["g674.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0130310972471733,"d":"0.01"},{"v":0.146193925639151,"d":"0.15"},{"v":0.615215846023358,"d":"0.62"},{"v":0.124302405649508,"d":"0.12"},"X"]
["g675.t1","0044763:0008152","0016874:0000166",null,"single-organism cellular process:metabolic process","ligase activity:nucleotide binding",{"$nulls":3},"sp|Q7W4B2|MURD_BORPA","UDP-N-acetylmuramoylalanine--D-glutamate ligase","gi|168039117|ref|XP_001772045.1|",null,null,"x","x",{"v":1.92357080425275,"d":"1.92"},{"v":1.48645857168609,"d":"1.49"},{"v":0.598773158712702,"d":"0.60"},{"v":0.0810600165657537,"d":"0.08"}]
["g676.t1",{"$nulls":15},{"v":0.04965066970414,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.0525025586823797,"d":"0.05"},{"v":0,"d":"0.00"},"X",null,"X"]
["g677.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595484032|gb|EXX71174.1|"]
["g678.t1"]
["g679.t1"]
["g680.t1"]
["g681.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.11330074177742,"d":"0.11"},{"v":0,"d":"0.00"}]
["g79826.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|769794566|ref|XP_011628706.1|",{"$nulls":8},"X"]
["g54005.t1",{"$nulls":8},"sp|P27502|POL_RTBVP","Polyprotein P3","gi|557781264|ref|XP_005190251.1|",{"$nulls":8},"X"]
["g54006.t1",{"$nulls":19},"X",null,"X"]
["g54007.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.292435620619257,"d":"0.29"},{"v":0.163190594388334,"d":"0.16"},"X",null,"X"]
["g54008.t1",{"$nulls":15},{"v":0.0625456126691471,"d":"0.06"},{"v":0.0704048311451283,"d":"0.07"},{"v":0.211075850044043,"d":"0.21"},{"v":0,"d":"0.00"}]
["g54009.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.140509460054581,"d":"0.14"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X"]
["g54010.t1"]
["g79827.t1",{"$nulls":19},"X",null,"X"]
["g54011.t1"]
["g54012.t1",null,5488,null,null,"binding",null,"ARATHwo_AT5G56900.2","CwfJ-like family protein / zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, catalytic activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Histidine triad-like motif (InterPro:IPR011146), Cwf19-like, C-terminal domain-1 (InterPro:IPR006768), Cwf19-like protein, C-terminal domain-2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein (TAIR:AT1G56290.1); Has 929 Blast hits to 786 proteins in 187 species: Archae - 0; Bacteria - 11; Metazoa - 341; Fungi - 367; Plants - 103; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).","sp|Q84WU9|C3H64_ARATH","Zinc finger CCCH domain-containing protein 64","gi|302805284|ref|XP_002984393.1|",null,null,"x","x",{"v":0.909287964526115,"d":"0.91"},{"v":1.06904570722563,"d":"1.07"},{"v":2.23193059564694,"d":"2.23"},{"v":0.298112373866208,"d":"0.30"}]
["g54013.t1"]
["g54014.t1",{"$nulls":6},"ARATHwo_AT5G47010.1","Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.","sp|Q8R151|ZNFX1_MOUSE","NFX1-type zinc finger-containing protein 1","gi|672821230|gb|KFH66126.1|",{"$nulls":4},{"v":0.0455855982975175,"d":"0.05"},{"v":1.41952499253469,"d":"1.42"},{"v":0.288954160581341,"d":"0.29"},{"v":12.7706904285987,"d":"12.77"}]
["g54015.t1",{"$nulls":6},"ARATHwo_AT1G07750.1","RmlC-like cupins superfamily protein; FUNCTIONS IN: copper ion binding, zinc ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G28680.1); Has 920 Blast hits to 832 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 914; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","sp|P12615|SSG1_AVESA","12S seed storage globulin 1","gi|731349137|ref|XP_010685842.1|",{"$nulls":4},{"v":0.591875945532343,"d":"0.59"},{"v":14.3460110487662,"d":"14.35"},{"v":0.122797345883574,"d":"0.12"},{"v":1351.53842555027,"d":"1351.54"}]
["g54016.t1",9094,"0004106:0016597:0004664",5737,"L-phenylalanine biosynthetic process","chorismate mutase activity:amino acid binding:prephenate dehydratase activity","cytoplasm",null,null,"sp|Q58054|PHEA_METJA","Prephenate dehydratase","gi|901820060|gb|KMZ72411.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":6.18008004732842,"d":"6.18"},{"v":21.6599850806664,"d":"21.66"},{"v":3.80546928863504,"d":"3.81"}]
["g54017.t1"]
["g54018.t1","0009628:0009094:0044707","0004106:0004664:0016597",9507,"response to abiotic stimulus:L-phenylalanine biosynthetic process:single-multicellular organism process","chorismate mutase activity:prephenate dehydratase activity:amino acid binding","chloroplast",{"$nulls":4},"gi|901820060|gb|KMZ72411.1|"]
["g54019.t1",{"$nulls":15},{"v":0.0212989505720266,"d":"0.02"},{"v":0.0286789689157848,"d":"0.03"},{"v":0.147197183931434,"d":"0.15"},{"v":0.053186458463629,"d":"0.05"}]
["g54020.t1","0010048:0048440:0043481:0009094","0047769:0004106:0004664:0016597",9507,"vernalization response:carpel development:anthocyanin accumulation in tissues in response to UV light:L-phenylalanine biosynthetic process","arogenate dehydratase activity:chorismate mutase activity:prephenate dehydratase activity:amino acid binding","chloroplast","ARATHwo_AT3G07630.1","Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].","sp|Q9SSE7|AROD2_ARATH","Arogenate dehydratase/prephenate dehydratase 2, chloroplastic","gi|148909434|gb|ABR17815.1|",null,null,"x","x",{"v":3.97520621501928,"d":"3.98"},{"v":4.32282421465454,"d":"4.32"},{"v":2.63106526296213,"d":"2.63"},{"v":5.91974948916309,"d":"5.92"}]
["g79859.t1",{"$nulls":13},"x","x",{"v":31.6826077612206,"d":"31.68"},{"v":32.7324461059303,"d":"32.73"},{"v":5.89605233944941,"d":"5.90"},{"v":9.90877618642545,"d":"9.91"}]
["g54021.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0623090082961717,"d":"0.06"},{"v":0,"d":"0.00"}]
["g54022.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":1.20971699668494,"d":"1.21"},{"v":1.5456483176482,"d":"1.55"},{"v":0,"d":"0.00"},"X"]
["g54023.t1",{"$nulls":8},"sp|Q9UR07|TF211_SCHPO","Transposon Tf2-11 polyprotein","gi|848857712|ref|XP_012829796.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.226545759656255,"d":"0.23"},{"v":0.148810621520384,"d":"0.15"},"X"]
["g54024.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":5},{"v":0.102778444804672,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0.366187750761781,"d":"0.37"},{"v":0,"d":"0.00"},null,"X"]
["g54025.t1",{"$nulls":15},{"v":0.37858317502779,"d":"0.38"},{"v":0.115528676302534,"d":"0.12"},{"v":1.08491513200389,"d":"1.08"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54026.t1"]
["g54027.t1"]
["g54028.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|147852368|emb|CAN82213.1|",{"$nulls":4},{"v":0.0514174470992174,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.134813774461453,"d":"0.13"},{"v":0.662443842881683,"d":"0.66"}]
["g79863.t1",{"$nulls":13},"x","x",{"v":1.24489109967934,"d":"1.24"},{"v":1.07218638009353,"d":"1.07"},{"v":0.605722240510034,"d":"0.61"},{"v":0,"d":"0.00"}]
["g79869.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.37475100027809,"d":"0.37"},{"v":0.45223290399376,"d":"0.45"},{"v":0.239873851611764,"d":"0.24"},"X",null,"X"]
["g54029.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0712036830040925,"d":"0.07"},{"v":0,"d":"0.00"},null,"X","X"]
["g54030.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":8},"X"]
["g54031.t1",{"$nulls":8},"sp|Q00962|POL_CAMVN","Enzymatic polyprotein","gi|909992442|gb|KNG49897.1|",{"$nulls":8},"X"]
["g54032.t1"]
["g54033.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|645251789|ref|XP_008231835.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0323736014037547,"d":"0.03"},{"v":0.0257516276332684,"d":"0.03"},{"v":0,"d":"0.00"}]
["g54034.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.287517700044674,"d":"0.29"},{"v":0.091713237019375,"d":"0.09"}]
["g54035.t1","0044238:0044260:0009628:0015031:0006950",null,"0000139:0031410","primary metabolic process:cellular macromolecule metabolic process:response to abiotic stimulus:protein transport:response to stress",null,"Golgi membrane:cytoplasmic vesicle","ARATHwo_AT4G08520.1","SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT3G09800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6Z844|COPZ2_ORYSJ","Coatomer subunit zeta-2","gi|168003203|ref|XP_001754302.1|",null,"x","x","x",{"v":131.741328863657,"d":"131.74"},{"v":160.614742759731,"d":"160.61"},{"v":52.0683044556797,"d":"52.07"},{"v":113.175497100163,"d":"113.18"}]
["g54036.t1",{"$nulls":8},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0373307510831034,"d":"0.04"},{"v":0.0903169766628421,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g54037.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|921122193|ref|XP_013435714.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.256941692720876,"d":"0.26"},{"v":0.344627792899639,"d":"0.34"},{"v":0,"d":"0.00"},"X"]
["g54038.t1",44765,null,null,"single-organism transport",null,null,"ARATHwo_AT5G41610.1","member of Putative Na+/H+ antiporter family","sp|Q9FFR9|CHX18_ARATH","Cation/H(+) antiporter 18","gi|674888193|emb|CDY44462.1|",null,null,"x","x",{"v":0.157929265831167,"d":"0.16"},{"v":0.848953442875313,"d":"0.85"},{"v":21.241435477855,"d":"21.24"},{"v":0.602701704055611,"d":"0.60"}]
["g54039.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.125608062052076,"d":"0.13"},{"v":1.00435546345459,"d":"1.00"},{"v":0,"d":"0.00"}]
["g54040.t1",{"$nulls":6},"ARATHwo_AT1G48320.1","Encodes one of the two functional DHNA-CoA (1,4-dihydroxy-2-naphthoyl-CoA) thioesterases found in Arabidopsis.","sp|P77781|MENI_ECOLI","1,4-dihydroxy-2-naphthoyl-CoA hydrolase","gi|116792620|gb|ABK26436.1|",null,"x","x","x",{"v":11.4944618302795,"d":"11.49"},{"v":6.47230570909922,"d":"6.47"},{"v":9.19915290453814,"d":"9.20"},{"v":2.32988533871661,"d":"2.33"}]
["g54041.t1",{"$nulls":10},"gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.256005508752333,"d":"0.26"},{"v":0.43008075207156,"d":"0.43"},{"v":2.12246119079492,"d":"2.12"},{"v":1.75359518852862,"d":"1.75"},"X"]
["g54042.t1",null,5488,null,null,"binding",{"$nulls":5},"gi|514689791|ref|XP_004992470.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0322022981255125,"d":"0.03"},{"v":0.216562661677737,"d":"0.22"},{"v":0,"d":"0.00"},"X"]
["g79884.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|595851814|ref|XP_007210190.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.06733820717475,"d":"1.07"},{"v":0.395699149962509,"d":"0.40"},"X"]
["g54043.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.153488563464011,"d":"0.15"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g54044.t1","0043170:0044238",46872,16020,"macromolecule metabolic process:primary metabolic process","metal ion binding","membrane",null,null,"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|77550763|gb|ABA93560.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.286043766857283,"d":"0.29"},{"v":0.867072746789944,"d":"0.87"},"X"]
["g54045.t1",{"$nulls":6},"ARATHwo_AT2G42090.1","actin related gene or pseudogene, based on sequence divergence and lack of expression","sp|Q3ZBD2|ARP10_BOVIN","Actin-related protein 10","gi|873221507|emb|CEM33419.1|",null,null,"x","x",{"v":0.730486455670966,"d":"0.73"},{"v":0.485380171917221,"d":"0.49"},{"v":1.08964557584006,"d":"1.09"},{"v":1.2559653701987,"d":"1.26"}]
["g54046.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.856695221224156,"d":"0.86"},{"v":1.23719764289054,"d":"1.24"},{"v":0.508264274224529,"d":"0.51"},"X",null,"X"]
["g54047.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).",{"$nulls":3},"x"]
["g54048.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0825089258935357,"d":"0.08"},{"v":0.159104695735784,"d":"0.16"},{"v":0,"d":"0.00"}]
["g54049.t1",{"$nulls":8},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10","gi|731340581|ref|XP_010681479.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0262471400921984,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.095465645818055,"d":"0.10"},"X"]
["g54050.t1"]
["g54051.t1"]
["g54052.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.0962164679597009,"d":"0.10"},{"v":0.808277006986692,"d":"0.81"},{"v":2.79739818530374,"d":"2.80"},{"v":1.52269830396418,"d":"1.52"},null,"X"]
["g79891.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.107733633481051,"d":"0.11"},{"v":0.814507910540444,"d":"0.81"},{"v":0.0766687701122343,"d":"0.08"},"X",null,"X"]
["g79895.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":1.21762887508872,"d":"1.22"},{"v":2.66626445516306,"d":"2.67"},{"v":1.72677559841176,"d":"1.73"},"X",null,"X"]
["g79897.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).",{"$nulls":3},"x",{"$nulls":7},"X"]
["g54053.t1",{"$nulls":15},{"v":3.74290387339088,"d":"3.74"},{"v":2.10537871922147,"d":"2.11"},{"v":2.84346098706501,"d":"2.84"},{"v":5.46934031506997,"d":"5.47"}]
["g54054.t1",{"$nulls":15},{"v":0.464136017895032,"d":"0.46"},{"v":0.122285515913531,"d":"0.12"},{"v":0.20477098869762,"d":"0.20"},{"v":0.799110635890964,"d":"0.80"}]
["g54055.t1"]
["g54056.t1"]
["g54057.t1",{"$nulls":8},"sp|Q2IA00|SPEF2_PIG","Sperm flagellar protein 2","gi|907099496|gb|KND04732.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.030258797066857,"d":"0.03"},{"v":13.9670143389036,"d":"13.97"},{"v":0.073392894491064,"d":"0.07"}]
["g54058.t1",{"$nulls":13},"x","x",{"v":0.0336425123320879,"d":"0.03"},{"v":0.076839029610597,"d":"0.08"},{"v":14.7185536456789,"d":"14.72"},{"v":0.140265136845433,"d":"0.14"}]
["g54059.t1",6536,"0030170:0004351:0005516",null,"glutamate metabolic process","pyridoxal phosphate binding:glutamate decarboxylase activity:calmodulin binding",null,"ARATHwo_AT5G17330.1","Encodes one of two isoforms of glutamate decarboxylase.","sp|Q07346|DCE_PETHY","Glutamate decarboxylase","gi|302798252|ref|XP_002980886.1|",{"$nulls":4},{"v":6.00744714234732,"d":"6.01"},{"v":36.7726441614228,"d":"36.77"},{"v":11.7854749203747,"d":"11.79"},{"v":20.225976631788,"d":"20.23"},null,"X"]
["g54060.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0683076288549507,"d":"0.07"},{"v":0.459769390436517,"d":"0.46"},{"v":0,"d":"0.00"},"X"]
["g54061.t1",{"$nulls":8},"sp|P03555|POL_CAMVC","Enzymatic polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.119540097313562,"d":"0.12"},{"v":0,"d":"0.00"},"X"]
["g54062.t1",{"$nulls":20},"X","X"]
["g54063.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.124431250806105,"d":"0.12"},{"v":0.526444048571034,"d":"0.53"},{"v":0.210395175363214,"d":"0.21"},"X",null,"X"]
["g79909.t1",{"$nulls":13},"x","x",{"v":49.0837410086131,"d":"49.08"},{"v":26.3219827135002,"d":"26.32"},{"v":17.351124093593,"d":"17.35"},{"v":10.8689769111358,"d":"10.87"}]
["g79910.t1",{"$nulls":6},"ARATHwo_AT5G63440.2","Protein of unknown function (DUF167); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF167) (TAIR:AT1G49170.1); Has 813 Blast hits to 813 proteins in 317 species: Archae - 13; Bacteria - 428; Metazoa - 238; Fungi - 12; Plants - 68; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).","sp|Q8GWQ6|Y6344_ARATH","UPF0235 protein At5g63440","gi|340381130|ref|XP_003389074.1|",null,"x","x","x",{"v":23.4637479983881,"d":"23.46"},{"v":10.706678991216,"d":"10.71"},{"v":7.20042978849977,"d":"7.20"},{"v":7.06465384372908,"d":"7.06"}]
["g682.t1",{"$nulls":8},"sp|P25386|USO1_YEAST","Intracellular protein transport protein USO1",{"$nulls":5},{"v":1.25840111506188,"d":"1.26"},{"v":2.52857722552648,"d":"2.53"},{"v":11.9540368097566,"d":"11.95"},{"v":4.52455211252823,"d":"4.52"},"X"]
["g683.t1",{"$nulls":13},"x","x",{"v":0.0831020075483209,"d":"0.08"},{"v":0.191860893854307,"d":"0.19"},{"v":29.8972892475664,"d":"29.90"},{"v":0.568749088654814,"d":"0.57"}]
["g683.t2",{"$nulls":13},"x","x",{"v":0.0831020075483209,"d":"0.08"},{"v":0.191860893854307,"d":"0.19"},{"v":29.8972892475664,"d":"29.90"},{"v":0.568749088654814,"d":"0.57"}]
["g683.t3",{"$nulls":13},"x","x",{"v":0.0831020075483209,"d":"0.08"},{"v":0.191860893854307,"d":"0.19"},{"v":29.8972892475664,"d":"29.90"},{"v":0.568749088654814,"d":"0.57"}]
["g684.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0.0463930928377894,"d":"0.05"},{"v":0.149705230374801,"d":"0.15"},{"v":0.889981636150003,"d":"0.89"},{"v":0,"d":"0.00"},"X"]
["g685.t1",{"$nulls":6},"ARATHwo_AT1G04850.1","ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567), Zinc finger, C2H2-type (InterPro:IPR007087), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48690.1); Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2591; Fungi - 765; Plants - 4746; Viruses - 72; Other Eukaryotes - 1251 (source: NCBI BLink).","sp|Q6IP50|UBX1A_XENLA","UBX domain-containing protein 1-A","gi|923913603|ref|XP_013726452.1|",null,"x","x","x",{"v":57.3401352546843,"d":"57.34"},{"v":38.6436343485857,"d":"38.64"},{"v":34.7823533899856,"d":"34.78"},{"v":33.6240184822908,"d":"33.62"}]
["g686.t1",{"$nulls":6},"ARATHwo_AT1G13370.1","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: root, inflorescence, flower, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14571 Blast hits to 14563 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10588; Fungi - 2030; Plants - 1255; Viruses - 0; Other Eukaryotes - 698 (source: NCBI BLink).","sp|Q55BP0|H33C_DICDI","Histone H3.3 type c","gi|669301801|gb|KFD45534.1|"]
["g687.t1","0070647:0032259",16740,null,"protein modification by small protein conjugation or removal:methylation","transferase activity",null,"ARATHwo_AT5G51130.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456), Bicoid-interacting 3 (InterPro:IPR010675); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6NPC9|BIN3D_ARATH","Probable RNA methyltransferase At5g51130","gi|125562378|gb|EAZ07826.1|",null,null,"x","x",{"v":3.21149146523897,"d":"3.21"},{"v":3.11155216937314,"d":"3.11"},{"v":2.70573563527153,"d":"2.71"},{"v":4.33193631350758,"d":"4.33"}]
["g688.t1","0044238:0044260",5488,"0043231:0044444","primary metabolic process:cellular macromolecule metabolic process","binding","intracellular membrane-bounded organelle:cytoplasmic part","ARATHwo_AT3G12580.1","heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).","sp|P09189|HSP7C_PETHY","Heat shock cognate 70 kDa protein","gi|659117990|ref|XP_008458892.1|",{"$nulls":4},{"v":2.55503974955382,"d":"2.56"},{"v":4.4635775550888,"d":"4.46"},{"v":8.28475746859406,"d":"8.28"},{"v":4.74723165672506,"d":"4.75"}]
["g689.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.19584436563943,"d":"0.20"},{"v":0,"d":"0.00"}]
["g690.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0286890230868702,"d":"0.03"},{"v":0.158311678434842,"d":"0.16"},{"v":0,"d":"0.00"}]
["g691.t1"]
["g692.t1"]
["g693.t1",{"$nulls":8},"sp|Q9LCQ5|DNAK_BRECH","Chaperone protein DnaK","gi|802547272|ref|XP_012089450.1|",{"$nulls":4},{"v":3.43386340222408,"d":"3.43"},{"v":2.58063898353714,"d":"2.58"},{"v":2.20099846643023,"d":"2.20"},{"v":5.36213493706483,"d":"5.36"}]
["g694.t1",8152,"0003924:0005525",null,"metabolic process","GTPase activity:GTP binding",null,"ARATHwo_AT1G60500.1","Dynamin related protein 4C (DRP4C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375), Interferon-induced Mx protein (InterPro:IPR015577); BEST Arabidopsis thaliana protein match is: Dynamin related protein 4A (TAIR:AT1G60530.1); Has 2653 Blast hits to 2628 proteins in 285 species: Archae - 0; Bacteria - 0; Metazoa - 1034; Fungi - 820; Plants - 506; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).","sp|Q9ZP55|DRP4C_ARATH","Dynamin-related protein 4C","gi|923754959|ref|XP_013675486.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.155869074462857,"d":"0.16"}]
["g695.t1",{"$nulls":8},"sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab"]
["g696.t1",{"$nulls":10},"gi|750340402|ref|WP_040622321.1|",{"$nulls":4},{"v":0.0494421845715076,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g697.t1"]
["g698.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8BR93|HARB1_MOUSE","Putative nuclease HARBI1","gi|340382901|ref|XP_003389956.1|",{"$nulls":9},"X"]
["g699.t1",{"$nulls":15},{"v":0.120009475475764,"d":"0.12"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g700.t1",{"$nulls":10},"gi|551559469|ref|XP_005766652.1|"]
["g701.t1",{"$nulls":10},"gi|157101304|dbj|BAF79983.1|",null,null,"x","x",{"v":1.8404147525426,"d":"1.84"},{"v":0.07254344246955,"d":"0.07"},{"v":0.232659958105456,"d":"0.23"},{"v":0,"d":"0.00"}]
["g702.t1",44237,16772,null,"cellular metabolic process","transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT5G02070.1","Protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G53840.1); Has 114140 Blast hits to 113200 proteins in 4569 species: Archae - 121; Bacteria - 12456; Metazoa - 42740; Fungi - 9504; Plants - 32338; Viruses - 412; Other Eukaryotes - 16569 (source: NCBI BLink).","sp|Q9LZM4|WAKLQ_ARATH","Wall-associated receptor kinase-like 20","gi|215695019|dbj|BAG90210.1|"]
["g703.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|595441411|gb|EXX53826.1|",{"$nulls":8},"X"]
["g704.t1"]
["g705.t1"]
["g706.t1","0043170:0044238",5488,16020,"macromolecule metabolic process:primary metabolic process","binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|38346970|emb|CAD39728.2|",{"$nulls":4},{"v":0.0263806316314407,"d":"0.03"},{"v":0.340472537435341,"d":"0.34"},{"v":5.18191498447077,"d":"5.18"},{"v":1.6332856865217,"d":"1.63"},null,"X"]
["g707.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.16100045243499,"d":"1.16"},{"v":0.210132507801411,"d":"0.21"},"X",null,"X"]
["g708.t1","0071704:0044238:0044763:0015717:0044237",5215,"0009941:0016020","organic substance metabolic process:primary metabolic process:single-organism cellular process:triose phosphate transport:cellular metabolic process","transporter activity","chloroplast envelope:membrane","ARATHwo_AT5G46110.4","Encodes a chloroplast triose phosphate / 3-phosphoglycerate translocator that transports triose phosphates derived from the Calvin cycle in the stroma to the cytosol for use in sucrose synthesis and other biosynthetic processes. A tpt mutant has altered acclimation responses.","sp|P21727|TPT_PEA","Triose phosphate/phosphate translocator, chloroplastic","gi|593792658|ref|XP_007159368.1|",null,null,"x","x",{"v":0.91171971094658,"d":"0.91"},{"v":3.03617474613062,"d":"3.04"},{"v":9.97677920365567,"d":"9.98"},{"v":0.187618642862389,"d":"0.19"}]
["g709.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.304842482938062,"d":"0.30"}]
["g710.t1",{"$nulls":15},{"v":0.0421026331876211,"d":"0.04"},{"v":0.497510182309926,"d":"0.50"},{"v":1.74778823011506,"d":"1.75"},{"v":0.87880306390403,"d":"0.88"},"X",null,"X"]
["g711.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|657989954|ref|XP_008387198.1|",{"$nulls":4},{"v":0.082295034886609,"d":"0.08"},{"v":0.804022126517561,"d":"0.80"},{"v":3.05793564468294,"d":"3.06"},{"v":1.01881482383643,"d":"1.02"},"X"]
["g712.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|923912317|ref|XP_013725862.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.267253860139677,"d":"0.27"},{"v":2.87303260021226,"d":"2.87"},{"v":0.237725022637952,"d":"0.24"},"X"]
["g713.t1",null,null,9536,null,null,"plastid","ARATHwo_AT1G18490.1","Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G39890.1); Has 360 Blast hits to 360 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).","sp|Q1G3U6|PCO3_ARATH","Plant cysteine oxidase 3","gi|148910307|gb|ABR18233.1|",null,null,"x","x",{"v":2.14615898431107,"d":"2.15"},{"v":2.33306150237442,"d":"2.33"},{"v":2.22387343536418,"d":"2.22"},{"v":1.39664767406253,"d":"1.40"}]
["g714.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",16020,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity","membrane",null,null,"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|55168131|gb|AAV43998.1|",{"$nulls":4},{"v":0.041666449517185,"d":"0.04"},{"v":0.644176092429796,"d":"0.64"},{"v":2.77772442922049,"d":"2.78"},{"v":1.49032648506436,"d":"1.49"},"X"]
["g715.t1",{"$nulls":8},"sp|P12258|HOBOT_DROME","Transposable element Hobo transposase","gi|194752415|ref|XP_001958518.1|",{"$nulls":4},{"v":0.236300720051298,"d":"0.24"},{"v":0.405055472202857,"d":"0.41"},{"v":0.541050153379328,"d":"0.54"},{"v":0.276224746753732,"d":"0.28"},null,"X"]
["g716.t1",{"$nulls":8},"sp|Q80W93|HYDIN_MOUSE","Hydrocephalus-inducing protein",{"$nulls":9},"X"]
["g717.t1","0006810:0044699:0032502",5543,31902,"transport:single-organism process:developmental process","phospholipid binding","late endosome membrane","ARATHwo_AT5G07120.1","Encodes sorting nexin SNX2b. SNX2b is peripherally associated with membranes. Involved in vesicular trafficking from endosomes to the vacuole.","sp|B9DFS6|SNX2B_ARATH","Sorting nexin 2B","gi|702280952|ref|XP_010045390.1|",null,null,"x","x",{"v":10.620342595603,"d":"10.62"},{"v":9.3854297159011,"d":"9.39"},{"v":6.74457999469237,"d":"6.74"},{"v":17.9047471455714,"d":"17.90"}]
["g718.t1",null,null,9536,null,null,"plastid","ARATHwo_AT1G10095.1","Protein prenylyltransferase superfamily protein; FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: protein amino acid prenylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); Has 876 Blast hits to 751 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 510; Fungi - 118; Plants - 152; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).","sp|A3KPW7|PTAR1_DANRE","Protein prenyltransferase alpha subunit repeat-containing protein 1","gi|923907604|ref|XP_013723728.1|",null,null,"x","x",{"v":1.60196329355601,"d":"1.60"},{"v":2.51658344260244,"d":"2.52"},{"v":2.72201689034063,"d":"2.72"},{"v":8.25755021745627,"d":"8.26"}]
["g719.t1",{"$nulls":10},"gi|658053698|ref|XP_008362604.1|",{"$nulls":4},{"v":0.036809813336377,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.205131612187201,"d":"0.21"},{"v":0,"d":"0.00"},"X"]
["g720.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.125049882100393,"d":"0.13"},{"v":0.540351076498509,"d":"0.54"},{"v":0.216842392179667,"d":"0.22"}]
["g721.t1"]
["g722.t1"]
["g723.t1","0044260:0044238",16740,null,"cellular macromolecule metabolic process:primary metabolic process","transferase activity",null,"ARATHwo_AT2G41500.1","Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome. LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells.","sp|O22212|PRP4L_ARATH","U4/U6 small nuclear ribonucleoprotein PRP4-like protein","gi|168010281|ref|XP_001757833.1|",null,null,"x","x",{"v":4.08847447028341,"d":"4.09"},{"v":2.6202134543452,"d":"2.62"},{"v":1.2059774177678,"d":"1.21"},{"v":3.4630078841699,"d":"3.46"}]
["g724.t1","0043255:0051788:0009853:0030243:0006007:0006816:0009651:0015991:0007033:0009809:0080129:0006511:0007030:0048193:0048765:0009932",46961,"0000325:0009507:0005794:0000221:0005886","regulation of carbohydrate biosynthetic process:response to misfolded protein:photorespiration:cellulose metabolic process:glucose catabolic process:calcium ion transport:response to salt stress:ATP hydrolysis coupled proton transport:vacuole organization:lignin biosynthetic process:proteasome core complex assembly:ubiquitin-dependent protein catabolic process:Golgi organization:Golgi vesicle transport:root hair cell differentiation:cell tip growth","proton-transporting ATPase activity, rotational mechanism","plant-type vacuole:chloroplast:Golgi apparatus:vacuolar proton-transporting V-type ATPase, V1 domain:plasma membrane","ARATHwo_AT1G12840.1","Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.","sp|Q9SDS7|VATC_ARATH","V-type proton ATPase subunit C","gi|823254611|ref|XP_012459949.1|",null,null,"x","x",{"v":30.8820862236852,"d":"30.88"},{"v":13.6097839025428,"d":"13.61"},{"v":6.29771381057718,"d":"6.30"},{"v":6.01866606855286,"d":"6.02"}]
["g725.t1",{"$nulls":8},"sp|Q9BUJ2|HNRL1_HUMAN","Heterogeneous nuclear ribonucleoprotein U-like protein 1","gi|548843832|gb|ERN03486.1|",null,null,"x","x",{"v":5.03056279456726,"d":"5.03"},{"v":14.3397266490676,"d":"14.34"},{"v":28.5501632601693,"d":"28.55"},{"v":10.7137974875963,"d":"10.71"}]
["g726.t1",19243,5515,19005,"methylglyoxal catabolic process to D-lactate","protein binding","SCF ubiquitin ligase complex","ARATHwo_AT1G06110.1","SKP1/ASK-interacting protein 16 (SKIP16); CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474); Has 2063 Blast hits to 2061 proteins in 779 species: Archae - 0; Bacteria - 1378; Metazoa - 194; Fungi - 63; Plants - 89; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9LND7|SKI16_ARATH","F-box protein SKIP16","gi|674917702|emb|CDY15562.1|",null,null,"x","x",{"v":6.06788756042329,"d":"6.07"},{"v":5.78099069505389,"d":"5.78"},{"v":2.99307381355895,"d":"2.99"},{"v":25.0024762685886,"d":"25.00"}]
["g727.t1",null,16740,"0044464:0016020",null,"transferase activity","cell part:membrane","ARATHwo_AT4G25720.1","This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.","sp|Q84WV9|QPCT_ARATH","Glutaminyl-peptide cyclotransferase","gi|294464786|gb|ADE77899.1|",null,"x","x","x",{"v":5.57831691753463,"d":"5.58"},{"v":2.81962963579918,"d":"2.82"},{"v":2.29946642284641,"d":"2.30"},{"v":1.07544855682585,"d":"1.08"}]
["g728.t1",{"$nulls":6},"ARATHwo_AT2G24020.1","Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1); Has 2239 Blast hits to 2239 proteins in 898 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).","sp|O82230|EBFC2_ARATH","Nucleoid-associated protein At2g24020, chloroplastic","gi|302756569|ref|XP_002961708.1|",null,"x","x","x",{"v":92.895384691649,"d":"92.90"},{"v":43.4417326790342,"d":"43.44"},{"v":18.159818584523,"d":"18.16"},{"v":19.261107430261,"d":"19.26"}]
["g729.t1",{"$nulls":13},"x","x",{"v":0.359851052678962,"d":"0.36"},{"v":6.01929695567414,"d":"6.02"},{"v":0.0461267914729197,"d":"0.05"},{"v":68.6308048943728,"d":"68.63"},null,"X","X"]
["g730.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.328514728112097,"d":"0.33"},{"v":0,"d":"0.00"},null,"X","X"]
["g731.t1",{"$nulls":6},"ARATHwo_AT1G28560.2","Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.","sp|Q8L627|SRD2_ARATH","snRNA-activating protein complex subunit","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":2.22845231944591,"d":"2.23"},{"v":2.95151550004233,"d":"2.95"},{"v":2.75222876757675,"d":"2.75"},{"v":2.97411041199895,"d":"2.97"},null,"X"]
["g732.t1",{"$nulls":15},{"v":0.293417419501299,"d":"0.29"},{"v":4.23223307439689,"d":"4.23"},{"v":4.30886617803184,"d":"4.31"},{"v":1.37873978483319,"d":"1.38"}]
["g733.t1",{"$nulls":6},"ARATHwo_AT4G06536.1","SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), SPla/RYanodine receptor SPRY (InterPro:IPR003877); Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).",null,null,"gi|168053118|ref|XP_001778985.1|",{"$nulls":4},{"v":1.17402775262987,"d":"1.17"},{"v":2.1007664586028,"d":"2.10"},{"v":1.40948429140002,"d":"1.41"},{"v":0.971654160469095,"d":"0.97"}]
["g734.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.12291556293287,"d":"0.12"},{"v":0.52831861236813,"d":"0.53"},{"v":0,"d":"0.00"}]
["g735.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|593693396|ref|XP_007147219.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0153842376942386,"d":"0.02"},{"v":0.0244584550064443,"d":"0.02"},{"v":0.0433901087129237,"d":"0.04"},null,"X"]
["g736.t1",{"$nulls":12},"x","x","x",{"v":2.12224963712307,"d":"2.12"},{"v":5.11825198937261,"d":"5.12"},{"v":20.0863292731926,"d":"20.09"},{"v":3.46587784481144,"d":"3.47"}]
["g737.t1",{"$nulls":15},{"v":0.10090608619822,"d":"0.10"},{"v":0.445876257463207,"d":"0.45"},{"v":1.19353646121021,"d":"1.19"},{"v":0.378921311578697,"d":"0.38"},"X",null,"X"]
["g738.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|56407688|gb|AAV88076.1|",{"$nulls":4},{"v":0.0164903572917995,"d":"0.02"},{"v":0.0605800873227246,"d":"0.06"},{"v":0.491062493379602,"d":"0.49"},{"v":0.263934147382264,"d":"0.26"}]
["g739.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.05006431365867,"d":"0.05"},{"v":0.0554173882927767,"d":"0.06"},{"v":0.298168318013309,"d":"0.30"}]
["g740.t1","0060271:0035721",null,"0005815:0005929:0030991","cilium morphogenesis:intraflagellar retrograde transport",null,"microtubule organizing center:cilium:intraflagellar transport particle A",null,null,"sp|A8HYP5|IFT43_CHLRE","Intraflagellar transport protein 43","gi|566018701|gb|ETI41612.1|",{"$nulls":4},{"v":3.38911706506468,"d":"3.39"},{"v":16.032141044163,"d":"16.03"},{"v":62.4911754376307,"d":"62.49"},{"v":10.4597828409306,"d":"10.46"}]
["g741.t1","0006461:0008152","0016887:0005524",5634,"protein complex assembly:metabolic process","ATPase activity:ATP binding","nucleus","ARATHwo_AT1G67120.1","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q869L3|MDN1_DICDI","Midasin","gi|720019044|ref|XP_010261986.1|",null,null,"x","x",{"v":0.396116508695753,"d":"0.40"},{"v":1.09919524227431,"d":"1.10"},{"v":0.691038253688952,"d":"0.69"},{"v":5.54572274806555,"d":"5.55"}]
["g742.t1",{"$nulls":6},"ARATHwo_AT1G67120.1","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q869L3|MDN1_DICDI","Midasin","gi|743826064|ref|XP_010933177.1|",{"$nulls":4},{"v":0.070129668690293,"d":"0.07"},{"v":1.5913691521736,"d":"1.59"},{"v":0.881759545032921,"d":"0.88"},{"v":5.96550144091138,"d":"5.97"}]
["g743.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.21217719585675,"d":"0.21"},{"v":0.535193658662564,"d":"0.54"},{"v":0.11505082486707,"d":"0.12"},"X",null,"X"]
["g744.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.249173577930184,"d":"0.25"},{"v":0.066827448020074,"d":"0.07"},"X",null,"X"]
["g745.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.121735097294479,"d":"0.12"},{"v":0,"d":"0.00"}]
["g746.t1"]
["g747.t1"]
["g748.t1",{"$nulls":19},"X",null,"X"]
["g749.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.260881065487152,"d":"0.26"},{"v":0.264490443844279,"d":"0.26"}]
["g750.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|242775227|ref|XP_002478601.1|",{"$nulls":8},"X"]
["g751.t1",{"$nulls":15},{"v":0.245502537617471,"d":"0.25"},{"v":0.0652036028272993,"d":"0.07"},{"v":0.39796021633542,"d":"0.40"},{"v":0,"d":"0.00"}]
["g752.t1"]
["g753.t1",{"$nulls":15},{"v":0.0437186367918211,"d":"0.04"},{"v":0.0212278203632335,"d":"0.02"},{"v":0.558377194203446,"d":"0.56"},{"v":0.347217563013586,"d":"0.35"}]
["g54064.t1",{"$nulls":6},"ARATHwo_AT1G43260.1","hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|147776104|emb|CAN72152.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.623060831757843,"d":"0.62"},{"v":0,"d":"0.00"}]
["g79918.t1",{"$nulls":10},"gi|851347406|ref|WP_048190923.1|",null,null,"x","x",{"v":0.173438122760424,"d":"0.17"},{"v":0.195690051510441,"d":"0.20"},{"v":0.0609127220811743,"d":"0.06"},{"v":0,"d":"0.00"}]
["g54065.t1",{"$nulls":6},"ARATHwo_AT4G26190.1","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G36540.1); Has 27570 Blast hits to 17450 proteins in 1040 species: Archae - 84; Bacteria - 2677; Metazoa - 10403; Fungi - 2363; Plants - 1406; Viruses - 96; Other Eukaryotes - 10541 (source: NCBI BLink).","sp|O94336|YHM3_SCHPO","Uncharacterized FCP1 homology domain-containing protein C1271.03c","gi|769810169|ref|XP_011623972.1|",{"$nulls":4},{"v":1.21618673147323,"d":"1.22"},{"v":1.55983877277643,"d":"1.56"},{"v":3.85670997622371,"d":"3.86"},{"v":8.14638926370012,"d":"8.15"}]
["g54066.t1"]
["g54067.t1",9058,16740,null,"biosynthetic process","transferase activity",null,"ARATHwo_AT5G19485.1","transferases;nucleotidyltransferases; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT2G34970.1); Has 6119 Blast hits to 5902 proteins in 1501 species: Archae - 491; Bacteria - 3115; Metazoa - 435; Fungi - 482; Plants - 325; Viruses - 0; Other Eukaryotes - 1271 (source: NCBI BLink).","sp|P56288|EI2BG_SCHPO","Probable translation initiation factor eIF-2B subunit gamma","gi|168038898|ref|XP_001771936.1|",null,null,"x","x",{"v":4.19654437724749,"d":"4.20"},{"v":4.03588930454789,"d":"4.04"},{"v":3.0655794239872,"d":"3.07"},{"v":7.12550371283613,"d":"7.13"}]
["g54068.t1",18095,4064,null,"protein polyglutamylation","arylesterase activity",null,"ARATHwo_AT1G77550.1","tubulin-tyrosine ligases;tubulin-tyrosine ligases; FUNCTIONS IN: tubulin-tyrosine ligase activity; INVOLVED IN: protein modification process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin-tyrosine ligase (InterPro:IPR004344); Has 1977 Blast hits to 1869 proteins in 143 species: Archae - 0; Bacteria - 8; Metazoa - 1192; Fungi - 29; Plants - 92; Viruses - 0; Other Eukaryotes - 656 (source: NCBI BLink).","sp|O95922|TTLL1_HUMAN","Probable tubulin polyglutamylase TTLL1","gi|260805230|ref|XP_002597490.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":2.77476066779516,"d":"2.77"},{"v":0.0992883716404443,"d":"0.10"}]
["g79938.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0355308134556555,"d":"0.04"},{"v":0.210312248965328,"d":"0.21"},{"v":0.487922594374722,"d":"0.49"},{"v":0.155747396234391,"d":"0.16"},"X"]
["g54069.t1",{"$nulls":15},{"v":0.293644266924208,"d":"0.29"},{"v":0.158653191393614,"d":"0.16"},{"v":1.39664064812407,"d":"1.40"},{"v":0,"d":"0.00"},null,"X","X"]
["g54070.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|77556305|gb|ABA99101.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.134294424599112,"d":"0.13"},{"v":1.66323045324621,"d":"1.66"},{"v":0.353362075559783,"d":"0.35"},"X"]
["g54071.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.239512967314464,"d":"0.24"},{"v":1.62682786771124,"d":"1.63"},{"v":0.957376505585249,"d":"0.96"},"X",null,"X"]
["g54072.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.085584862934771,"d":"0.09"},{"v":2.76140498283408,"d":"2.76"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54073.t1",null,"0017111:0000166",null,null,"nucleoside-triphosphatase activity:nucleotide binding",{"$nulls":3},"sp|Q63170|DYH7_RAT","Dynein heavy chain 7, axonemal","gi|302806964|ref|XP_002985213.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.895456381087702,"d":"0.90"},{"v":10.2863184898847,"d":"10.29"},{"v":1.77526486622536,"d":"1.78"},null,"X"]
["g54074.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|719975379|ref|XP_010247476.1|",{"$nulls":4},{"v":0.0308333904094842,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.265187011737895,"d":"0.27"},{"v":0.0699766278297517,"d":"0.07"}]
["g54075.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|115479893|ref|NP_001063540.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.326913612077673,"d":"0.33"},{"v":0.587763755359271,"d":"0.59"},{"v":0,"d":"0.00"},"X"]
["g54076.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.261805084109461,"d":"0.26"},{"v":0.101432721203749,"d":"0.10"},"X"]
["g54077.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",16020,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|77552016|gb|ABA94813.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.116121271152498,"d":"0.12"},{"v":0.538952057890661,"d":"0.54"},{"v":0.132347623498508,"d":"0.13"},null,"X"]
["g54078.t1",{"$nulls":15},{"v":0.320218952833402,"d":"0.32"},{"v":0.689526234215361,"d":"0.69"},{"v":0.759251761485118,"d":"0.76"},{"v":0.8008136964503,"d":"0.80"},null,"X","X"]
["g54079.t1",{"$nulls":6},"ARATHwo_AT5G07890.1","myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61200.3); Has 43004 Blast hits to 25312 proteins in 1567 species: Archae - 608; Bacteria - 4434; Metazoa - 22456; Fungi - 2945; Plants - 1841; Viruses - 100; Other Eukaryotes - 10620 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":0.857551574378206,"d":"0.86"},{"v":10.2044946459788,"d":"10.20"},{"v":17.6464765615437,"d":"17.65"},{"v":4.60168631009472,"d":"4.60"}]
["g54079.t2",{"$nulls":6},"ARATHwo_AT4G02710.1","Kinase interacting (KIP1-like) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting (KIP1-like) family protein (TAIR:AT1G03080.1); Has 113312 Blast hits to 57291 proteins in 3105 species: Archae - 1581; Bacteria - 20592; Metazoa - 51557; Fungi - 9057; Plants - 6359; Viruses - 476; Other Eukaryotes - 23690 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":0.857551574378206,"d":"0.86"},{"v":10.2044946459788,"d":"10.20"},{"v":17.6464765615437,"d":"17.65"},{"v":4.60168631009472,"d":"4.60"}]
["g54080.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.444212906403129,"d":"0.44"},{"v":1.00209492808567,"d":"1.00"},{"v":0,"d":"0.00"}]
["g79955.t1",8152,16787,null,"metabolic process","hydrolase activity",null,"ARATHwo_AT5G19730.1","Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q8VYZ3|PME53_ARATH","Probable pectinesterase 53","gi|567865847|ref|XP_006425546.1|",null,"x","x","x",{"v":35.1830287153548,"d":"35.18"},{"v":3.37252902846234,"d":"3.37"},{"v":1.11974796514877,"d":"1.12"},{"v":0.522186677150703,"d":"0.52"},"X"]
["g54081.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0820808391168077,"d":"0.08"},{"v":0,"d":"0.00"},{"v":0.17945154428657,"d":"0.18"}]
["g54082.t1",{"$nulls":15},{"v":0.0839090062635606,"d":"0.08"},{"v":0.178679829594567,"d":"0.18"},{"v":0.735258751163815,"d":"0.74"},{"v":0.405602525269974,"d":"0.41"}]
["g54083.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.263712067870647,"d":"0.26"},{"v":0,"d":"0.00"},"X"]
["g54084.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":9},"X"]
["g54085.t1",{"$nulls":6},"ARATHwo_AT5G54240.1","Protein of unknown function (DUF1223); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1223) (TAIR:AT4G27350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|861617032|gb|KMQ86489.1|",{"$nulls":4},{"v":2.50098890559203,"d":"2.50"},{"v":12.8690671140357,"d":"12.87"},{"v":5.66151400330319,"d":"5.66"},{"v":3.71510333253672,"d":"3.72"},null,"X"]
["g54086.t1","0007264:0003140:0071910:0015031:0035469:0061371",5525,null,"small GTPase mediated signal transduction:determination of left/right asymmetry in lateral mesoderm:determination of liver left/right asymmetry:protein transport:determination of pancreatic left/right asymmetry:determination of heart left/right asymmetry","GTP binding",null,"ARATHwo_AT5G45130.1","small GTP binding protein","sp|P35288|RAB23_MOUSE","Ras-related protein Rab-23","gi|761968827|gb|KIY99964.1|",null,null,"x","x",{"v":0.392269267119124,"d":"0.39"},{"v":0.922007136567227,"d":"0.92"},{"v":72.4472000894209,"d":"72.45"},{"v":1.58829782076959,"d":"1.59"}]
["g54087.t1",null,16297,null,null,"acyl-[acyl-carrier-protein] hydrolase activity",null,"ARATHwo_AT3G25110.1","Encodes a FatA acyl-ACP thioesterase","sp|Q42712|FATA_CORSA","Oleoyl-acyl carrier protein thioesterase, chloroplastic","gi|743806544|ref|XP_010927699.1|",{"$nulls":4},{"v":0.175785837871644,"d":"0.18"},{"v":0.190696449054919,"d":"0.19"},{"v":0.113791360324413,"d":"0.11"},{"v":0,"d":"0.00"}]
["g54088.t1",{"$nulls":6},"ARATHwo_AT3G01320.1","Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190).","sp|P0C6U5|R1A_CVHN5","Replicase polyprotein 1a",{"$nulls":5},{"v":0.527696109012493,"d":"0.53"},{"v":0,"d":"0.00"},{"v":0.622682734778777,"d":"0.62"},{"v":0.426588501965793,"d":"0.43"}]
["g54089.t1",{"$nulls":6},"ARATHwo_AT3G22220.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 845 Blast hits to 775 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 835; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":4},{"v":0.10522434001469,"d":"0.11"},{"v":0.130969376585451,"d":"0.13"},{"v":0.130445286545095,"d":"0.13"},{"v":0,"d":"0.00"},null,"X"]
["g54090.t1"]
["g54091.t1",{"$nulls":6},"ARATHwo_AT5G04180.1","alpha carbonic anhydrase 3 (ACA3); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: response to carbon dioxide, one-carbon metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 4 (TAIR:AT4G20990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q8VHB5|CAH9_MOUSE","Carbonic anhydrase 9","gi|91093377|ref|XP_971186.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.17415956989966,"d":"0.17"},{"v":0.78915725511205,"d":"0.79"},{"v":0,"d":"0.00"}]
["g79973.t1"]
["g54092.t1"]
["g54093.t1",{"$nulls":6},"ARATHwo_AT3G18090.1","Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated.",{"$nulls":7},{"v":61.2153568173915,"d":"61.22"},{"v":83.7618006836832,"d":"83.76"},{"v":59.4828020418872,"d":"59.48"},{"v":5.44349485329704,"d":"5.44"}]
["g54094.t1","0006979:0055114:0030091:0045892",8113,5829,"response to oxidative stress:oxidation-reduction process:protein repair:negative regulation of transcription, DNA-dependent","peptide-methionine (S)-S-oxide reductase activity","cytosol","ARATHwo_AT5G07470.1","ubiquitous enzyme that repairs oxidatively damaged proteins","sp|Q9LY14|MSRA3_ARATH","Peptide methionine sulfoxide reductase A3","gi|358249018|ref|NP_001239979.1|",null,null,"x","x"]
["g54095.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",{"$nulls":4},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.087999124405043,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g54096.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|670388583|ref|XP_008674752.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.110606099012026,"d":"0.11"},{"v":0,"d":"0.00"}]
["g54097.t1","0006979:0030091:0055114","0016787:0008113:0000166",null,"response to oxidative stress:protein repair:oxidation-reduction process","hydrolase activity:peptide-methionine (S)-S-oxide reductase activity:nucleotide binding",{"$nulls":3},"sp|P54152|MSRA_FRAAN","Peptide methionine sulfoxide reductase","gi|728812565|gb|KHG00896.1|",{"$nulls":4},{"v":25.6825063763403,"d":"25.68"},{"v":14.3161106113884,"d":"14.32"},{"v":13.7393620270101,"d":"13.74"},{"v":1.86070927177468,"d":"1.86"}]
["g54098.t1",{"$nulls":6},"ARATHwo_AT2G41705.1","camphor resistance CrcB family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Camphor resistance CrcB protein (InterPro:IPR003691); Has 1590 Blast hits to 1588 proteins in 699 species: Archae - 22; Bacteria - 1262; Metazoa - 2; Fungi - 87; Plants - 37; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).","sp|Q3T090|TSR2_BOVIN","Pre-rRNA-processing protein TSR2 homolog","gi|308812047|ref|XP_003083331.1|",{"$nulls":4},{"v":26.3063947988538,"d":"26.31"},{"v":5.50576358470794,"d":"5.51"},{"v":2.39557954917716,"d":"2.40"},{"v":13.1081017750826,"d":"13.11"}]
["g54099.t1"]
["g54100.t1",{"$nulls":13},"x","x",{"v":5.24633993702368,"d":"5.25"},{"v":5.23110687175472,"d":"5.23"},{"v":0,"d":"0.00"},{"v":111.945801843921,"d":"111.95"}]
["g79987.t1",8152,3824,null,"metabolic process","catalytic activity",null,"ARATHwo_AT3G24090.1","Encodes a glutamine-fructose-6-phosphate transaminase that likely plays a role in UDP-N-acetylglucosamine biosynthesis.","sp|P53871|DUG3_YEAST","Probable glutamine amidotransferase DUG3","gi|671692215|emb|CDS06948.1|"]
["g54101.t1",{"$nulls":6},"ARATHwo_AT3G03420.1","Ku70-binding family protein; CONTAINS InterPro DOMAIN/s: Peptidase M76, ATP23 (InterPro:IPR019165); Has 337 Blast hits to 337 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 144; Plants - 46; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).","sp|P0CQ26|ATP23_CRYNJ","Mitochondrial inner membrane protease ATP23","gi|168064724|ref|XP_001784309.1|",null,"x","x","x",{"v":20.9287480449268,"d":"20.93"},{"v":11.7115168949154,"d":"11.71"},{"v":7.51641847046401,"d":"7.52"},{"v":11.2452400378945,"d":"11.25"}]
["g54102.t1",null,null,16020,null,null,"membrane","ARATHwo_AT5G40770.1","prohibitin 3","sp|O04331|PHB3_ARATH","Prohibitin-3, mitochondrial","gi|641821756|gb|KDO41384.1|",{"$nulls":4},{"v":38.0719328444866,"d":"38.07"},{"v":6.74944480936207,"d":"6.75"},{"v":4.72659655087558,"d":"4.73"},{"v":7.94499010788775,"d":"7.94"}]
["g54103.t1","0044699:0050896",null,"0009507:0016020","single-organism process:response to stimulus",null,"chloroplast:membrane","ARATHwo_AT5G22790.1","reticulata-related 1 (RER1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT2G37860.3); Has 4329 Blast hits to 1807 proteins in 262 species: Archae - 14; Bacteria - 665; Metazoa - 1748; Fungi - 324; Plants - 608; Viruses - 168; Other Eukaryotes - 802 (source: NCBI BLink).","sp|Q9FGP9|RER1_ARATH","Protein RETICULATA-RELATED 1, chloroplastic","gi|302808115|ref|XP_002985752.1|",null,null,"x","x",{"v":1.30972940193067,"d":"1.31"},{"v":5.3384735013916,"d":"5.34"},{"v":1.92462663002846,"d":"1.92"},{"v":0.495212353785999,"d":"0.50"}]
["g54104.t1","0045893:0006415:0035304:0010207:0009902:0009965:0006396:0030154:0042793:0006364:0010027",16149,9570,"positive regulation of transcription, DNA-dependent:translational termination:regulation of protein dephosphorylation:photosystem II assembly:chloroplast relocation:leaf morphogenesis:RNA processing:cell differentiation:transcription from plastid promoter:rRNA processing:thylakoid membrane organization","translation release factor activity, codon specific","chloroplast stroma","ARATHwo_AT5G36170.1","Required for normal processing of polycistronic plastidial transcripts","sp|Q9LVY0|PRFB1_ARATH","Peptide chain release factor PrfB1, chloroplastic","gi|590637751|ref|XP_007029206.1|",null,null,"x","x",{"v":2.32261298994318,"d":"2.32"},{"v":0.540631270714839,"d":"0.54"},{"v":0.604390293092679,"d":"0.60"},{"v":0.700304133585323,"d":"0.70"}]
["g54105.t1",{"$nulls":6},"ARATHwo_AT1G01920.1","SET domain-containing protein; BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT1G14030.1); Has 611 Blast hits to 608 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 239; Plants - 164; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).","sp|P94026|RBCMT_TOBAC","Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic","gi|302805649|ref|XP_002984575.1|",null,null,"x","x",{"v":3.75202413257412,"d":"3.75"},{"v":1.18142251070625,"d":"1.18"},{"v":0.787593265293391,"d":"0.79"},{"v":1.60797791769081,"d":"1.61"}]
["g54106.t1"]
["g54107.t1","0071704:0044763:0048856:0007275",5488,null,"organic substance metabolic process:single-organism cellular process:anatomical structure development:multicellular organismal development","binding",null,"ARATHwo_AT5G62440.1","Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.","sp|Q42463|DCL_SOLLC","Protein DCL, chloroplastic","gi|747080020|ref|XP_011087245.1|",{"$nulls":4},{"v":25.2985776643709,"d":"25.30"},{"v":17.9120508992896,"d":"17.91"},{"v":12.5617492117905,"d":"12.56"},{"v":17.3038916856251,"d":"17.30"}]
["g54108.t1",6508,8233,5829,"proteolysis","peptidase activity","cytosol","ARATHwo_AT1G50670.1","OTU-like cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); Has 406 Blast hits to 406 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 136; Plants - 63; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).","sp|Q55BI3|OTU1_DICDI","Ubiquitin thioesterase OTU1","gi|168000350|ref|XP_001752879.1|",{"$nulls":4},{"v":2.38398771790301,"d":"2.38"},{"v":6.24257218724828,"d":"6.24"},{"v":11.6462964051841,"d":"11.65"},{"v":1.97010876947452,"d":"1.97"}]
["g54109.t1",19673,"0008446:0050662",null,"GDP-mannose metabolic process","GDP-mannose 4,6-dehydratase activity:coenzyme binding",null,"ARATHwo_AT3G51160.1","Catalyzes the first step in the de novo synthesis of GDP-L-fucose.","sp|P93031|GMD2_ARATH","GDP-mannose 4,6 dehydratase 2","gi|168066399|ref|XP_001785126.1|",null,null,"x","x",{"v":29.6101408894639,"d":"29.61"},{"v":36.5779419159359,"d":"36.58"},{"v":9.32037076900929,"d":"9.32"},{"v":13.0422656050488,"d":"13.04"}]
["g54110.t1",{"$nulls":10},"gi|303283618|ref|XP_003061100.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":63.3973757311959,"d":"63.40"},{"v":0,"d":"0.00"}]
["g54111.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.506515583937425,"d":"0.51"},{"v":0.091981441471216,"d":"0.09"},"X",null,"X"]
["g79995.t1","0019805:0009435","0046872:0051539:0016765:0008987",5737,"quinolinate biosynthetic process:NAD biosynthetic process","metal ion binding:4 iron, 4 sulfur cluster binding:transferase activity, transferring alkyl or aryl (other than methyl) groups:quinolinate synthetase A activity","cytoplasm","ARATHwo_AT5G14760.1","At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2","sp|Q98AV8|NADB_RHILO","L-aspartate oxidase","gi|493659897|ref|WP_006611260.1|",{"$nulls":8},"X",null,null,"g79995"]
["g54112.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",{"$nulls":4},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|317141088|ref|XP_003189333.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.423349295459655,"d":"0.42"},{"v":0.185119404780437,"d":"0.19"},"X"]
["g54113.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|590667112|ref|XP_007037156.1|",{"$nulls":4},{"v":0.0285692755537724,"d":"0.03"},{"v":0.72353507451311,"d":"0.72"},{"v":4.22656384374504,"d":"4.23"},{"v":0.866906353552913,"d":"0.87"},null,"X"]
["g54114.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.522795145403455,"d":"0.52"},{"v":1.91302584964897,"d":"1.91"},{"v":13.6252954325258,"d":"13.63"},{"v":2.71660334998147,"d":"2.72"},null,"X"]
["g754.t1",{"$nulls":6},"ARATHwo_AT3G19920.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0305194755270485,"d":"0.03"},{"v":0.054392209323922,"d":"0.05"}]
["g755.t1",{"$nulls":10},"gi|672144438|ref|XP_008796119.1|",null,null,"x",null,{"v":51.5386786424176,"d":"51.54"},{"v":20.1893005801899,"d":"20.19"},{"v":11.7222880142527,"d":"11.72"},{"v":33.6490936336743,"d":"33.65"}]
["g755.t2",{"$nulls":6},"ARATHwo_AT4G16695.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 21 Blast hits to 21 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|672144438|ref|XP_008796119.1|",null,"x","x","x",{"v":51.5386786424176,"d":"51.54"},{"v":20.1893005801899,"d":"20.19"},{"v":11.7222880142527,"d":"11.72"},{"v":33.6490936336743,"d":"33.65"}]
["g756.t1","0006468:0007017","0004672:0005524",null,"protein phosphorylation:microtubule-based process","protein kinase activity:ATP binding",null,"ARATHwo_AT1G12240.1","Encodes a vacuolar invertase betaFruct4. betaFruct4 is transported from the endoplasmic reticulum through the intermediate compartments as a membrane protein. The N-terminal cytoplasmic domain contains multiple sequence motifs that are involved at various stages in the trafficking of betaFruct4 from the ER to the central vacuole.","sp|P80065|INVB_DAUCA","Beta-fructofuranosidase, soluble isoenzyme I","gi|148910723|gb|ABR18428.1|",null,null,"x","x",{"v":0.632699058008721,"d":"0.63"},{"v":2.313696474879,"d":"2.31"},{"v":1.58459344675735,"d":"1.58"},{"v":1.25882104852395,"d":"1.26"}]
["g757.t1",{"$nulls":10},"gi|168065191|ref|XP_001784538.1|",null,null,"x","x",{"v":41.0717907556926,"d":"41.07"},{"v":11.2393183118915,"d":"11.24"},{"v":9.82917507908126,"d":"9.83"},{"v":27.5113481123525,"d":"27.51"}]
["g758.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|848865111|ref|XP_012833272.1|",{"$nulls":4},{"v":0.249052640906603,"d":"0.25"},{"v":0.0519993279524363,"d":"0.05"},{"v":0.198003352100013,"d":"0.20"},{"v":0.215897178048091,"d":"0.22"}]
["g759.t1",8152,"0004386:0003723:0005524",5634,"metabolic process","helicase activity:RNA binding:ATP binding","nucleus","ARATHwo_AT1G77030.1","hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DBP10CT (InterPro:IPR012541), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 42888 Blast hits to 42073 proteins in 3063 species: Archae - 831; Bacteria - 21864; Metazoa - 5973; Fungi - 4375; Plants - 2654; Viruses - 31; Other Eukaryotes - 7160 (source: NCBI BLink).","sp|O49289|RH29_ARATH","Putative DEAD-box ATP-dependent RNA helicase 29","gi|302758194|ref|XP_002962520.1|",{"$nulls":4},{"v":3.69320411086225,"d":"3.69"},{"v":5.21061058367468,"d":"5.21"},{"v":3.57318058725302,"d":"3.57"},{"v":7.54594937282219,"d":"7.55"}]
["g760.t1",8152,null,null,"metabolic process",null,null,"ARATHwo_AT1G55370.2","NDH-dependent cyclic electron flow 5 (NDF5); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: positive regulation of gene expression, photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 1 (TAIR:AT1G64770.1); Has 166 Blast hits to 165 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","sp|Q9C503|NDF5_ARATH","Protein NDH-DEPENDENT CYCLIC ELECTRON FLOW 5","gi|743931717|ref|XP_011010134.1|",null,null,"x","x",{"v":3.21205039520311,"d":"3.21"},{"v":1.55385419598571,"d":"1.55"},{"v":1.4154965267696,"d":"1.42"},{"v":1.800813630432,"d":"1.80"}]
["g761.t1",{"$nulls":15},{"v":3.87039699100482,"d":"3.87"},{"v":2.24769757297324,"d":"2.25"},{"v":1.62992789938035,"d":"1.63"},{"v":2.35961911403892,"d":"2.36"}]
["g762.t1",{"$nulls":6},"ARATHwo_AT3G27050.1","unknown protein; Has 43 Blast hits to 43 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).",null,null,"gi|302788358|ref|XP_002975948.1|",null,null,"x","x",{"v":16.8723404444007,"d":"16.87"},{"v":18.5521330524118,"d":"18.55"},{"v":9.26923377329233,"d":"9.27"},{"v":24.1666163958768,"d":"24.17"}]
["g763.t1","0001510:0006412",3735,"0005730:0022625","RNA methylation:translation","structural constituent of ribosome","nucleolus:cytosolic large ribosomal subunit","ARATHwo_AT3G52590.1","Ubiquitin extension protein","sp|P51423|RL40_BRARP","Ubiquitin-60S ribosomal protein L40","gi|695075701|ref|XP_009385098.1|",null,"x","x","x",{"v":2398.33506685165,"d":"2398.34"},{"v":569.865041917448,"d":"569.87"},{"v":579.775667306587,"d":"579.78"},{"v":653.699768301894,"d":"653.70"}]
["g764.t1",{"$nulls":6},"ARATHwo_AT2G17350.1","unknown protein; Has 119 Blast hits to 93 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 18; Fungi - 12; Plants - 44; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).",null,null,"gi|734345198|gb|KHN10614.1|",null,"x",null,null,{"v":4.82411297439807,"d":"4.82"},{"v":6.31316621866994,"d":"6.31"},{"v":4.66250784252819,"d":"4.66"},{"v":17.7631076121898,"d":"17.76"}]
["g765.t1",{"$nulls":10},"gi|720063234|ref|XP_010275607.1|",null,null,"x","x",{"v":0.310438540318087,"d":"0.31"},{"v":7.30605551056209,"d":"7.31"},{"v":3.75123304157284,"d":"3.75"},{"v":19.9046575304297,"d":"19.90"}]
["g766.t1",{"$nulls":6},"ARATHwo_AT5G16040.1","Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G02510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FN03|UVR8_ARATH","Ultraviolet-B receptor UVR8","gi|517863087|ref|WP_019033295.1|",{"$nulls":4},{"v":0.0150594053618451,"d":"0.02"},{"v":0.408459309744171,"d":"0.41"},{"v":3.31029184829053,"d":"3.31"},{"v":0.974705507765122,"d":"0.97"}]
["g766.t2",{"$nulls":6},"ARATHwo_AT3G15430.1","Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G26100.2); Has 18094 Blast hits to 5607 proteins in 419 species: Archae - 68; Bacteria - 2169; Metazoa - 6534; Fungi - 1176; Plants - 2879; Viruses - 4; Other Eukaryotes - 5264 (source: NCBI BLink).","sp|Q9N1T2|RPGR_CANLF","X-linked retinitis pigmentosa GTPase regulator","gi|517863087|ref|WP_019033295.1|",{"$nulls":4},{"v":0.0150594053618451,"d":"0.02"},{"v":0.408459309744171,"d":"0.41"},{"v":3.31029184829053,"d":"3.31"},{"v":0.974705507765122,"d":"0.97"}]
["g767.t1",null,null,"0016020:0016023:0005739",null,null,"membrane:cytoplasmic membrane-bounded vesicle:mitochondrion","ARATHwo_AT4G23000.1","Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT4G11800.1); Has 177 Blast hits to 132 proteins in 49 species: Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).","sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|168039409|ref|XP_001772190.1|"]
["g768.t1"]
["g769.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P11368|POL_IPMA","Putative Pol polyprotein","gi|727651886|ref|XP_010496662.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.116614328419737,"d":"0.12"},{"v":0,"d":"0.00"},null,"X"]
["g770.t1",null,null,44424,null,null,"intracellular part","ARATHwo_AT2G21970.1","stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein","sp|Q9SJ02|STEP2_ARATH","Stress enhanced protein 2, chloroplastic","gi|168004129|ref|XP_001754764.1|",{"$nulls":4},{"v":16.1333649718908,"d":"16.13"},{"v":3.59409067842875,"d":"3.59"},{"v":4.35998298396735,"d":"4.36"},{"v":0.160753675017626,"d":"0.16"}]
["g771.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.202985218295716,"d":"0.20"},{"v":0.459464065819362,"d":"0.46"},{"v":2.76858350024809,"d":"2.77"},{"v":0.863123200086068,"d":"0.86"},"X"]
["g772.t1",{"$nulls":6},"ARATHwo_AT3G61320.1","Bestrophin-like protein; CONTAINS InterPro DOMAIN/s: Bestrophin-like (InterPro:IPR021134); BEST Arabidopsis thaliana protein match is: Bestrophin-like protein (TAIR:AT2G45870.1); Has 1448 Blast hits to 1447 proteins in 512 species: Archae - 0; Bacteria - 1140; Metazoa - 0; Fungi - 113; Plants - 120; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).","sp|Q9M2D2|YU88_ARATH","UPF0187 protein At3g61320, chloroplastic","gi|168009672|ref|XP_001757529.1|",{"$nulls":4},{"v":0.680813766666284,"d":"0.68"},{"v":0.924737405029106,"d":"0.92"},{"v":2.21804552636262,"d":"2.22"},{"v":0,"d":"0.00"}]
["g773.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|586677744|ref|XP_006839025.1|",{"$nulls":4},{"v":0.0612971287443957,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.0810373163211233,"d":"0.08"},{"v":0,"d":"0.00"},"X"]
["g774.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3",null,"x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0.0979476361469697,"d":"0.10"},{"v":0.0286938183944838,"d":"0.03"},{"v":0,"d":"0.00"}]
["g775.t1",{"$nulls":15},{"v":0.0245023788166185,"d":"0.02"},{"v":1.41076669292732,"d":"1.41"},{"v":8.14679651604681,"d":"8.15"},{"v":0.111309506476207,"d":"0.11"}]
["g776.t1","0006007:0000302:0010039:0009266:0006099:0055072:0006972:0006833:0007030:0007033:0006102:0015979:0046686:0006096","0005507:0052633:0051539:0048027:0003994","0005829:0005739:0009506:0005773:0005886:0048046","glucose catabolic process:response to reactive oxygen species:response to iron ion:response to temperature stimulus:tricarboxylic acid cycle:iron ion homeostasis:hyperosmotic response:water transport:Golgi organization:vacuole organization:isocitrate metabolic process:photosynthesis:response to cadmium ion:glycolysis","copper ion binding:isocitrate hydro-lyase (cis-aconitate-forming) activity:4 iron, 4 sulfur cluster binding:mRNA 5'-UTR binding:aconitate hydratase activity","cytosol:mitochondrion:plasmodesma:vacuole:plasma membrane:apoplast","ARATHwo_AT4G35830.1","Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. This enzyme can also specifically bind to the 5' UTR of CSD2 in vitro.","sp|P49608|ACOC_CUCMA","Aconitate hydratase, cytoplasmic","gi|168053563|ref|XP_001779205.1|",null,null,"x","x",{"v":32.6768511702489,"d":"32.68"},{"v":30.4499778096387,"d":"30.45"},{"v":21.4566898078037,"d":"21.46"},{"v":22.9477391592838,"d":"22.95"}]
["g777.t1",{"$nulls":6},"ARATHwo_AT3G46220.2","unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611).","sp|B9FM64|UFL1_ORYSJ","E3 UFM1-protein ligase 1 homolog","gi|590589799|ref|XP_007016553.1|",{"$nulls":4},{"v":0.10156265378339,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0.0181632251999394,"d":"0.02"},{"v":0,"d":"0.00"}]
["g778.t1",{"$nulls":6},"ARATHwo_AT2G30050.1","transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: membrane budding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G01340.2); Has 24526 Blast hits to 15097 proteins in 577 species: Archae - 22; Bacteria - 4838; Metazoa - 8772; Fungi - 5346; Plants - 2605; Viruses - 0; Other Eukaryotes - 2943 (source: NCBI BLink).","sp|O64740|SC13B_ARATH","Protein transport protein SEC13 homolog B","gi|225452646|ref|XP_002281856.1|",null,null,"x","x",{"v":24.0440909817516,"d":"24.04"},{"v":12.9861376924453,"d":"12.99"},{"v":5.85015371833436,"d":"5.85"},{"v":6.82083313486943,"d":"6.82"}]
["g779.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT2G01820.1","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: pollen development; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: transmembrane kinase 1 (TAIR:AT1G66150.1); Has 179395 Blast hits to 141441 proteins in 4928 species: Archae - 173; Bacteria - 19044; Metazoa - 57542; Fungi - 11766; Plants - 68071; Viruses - 436; Other Eukaryotes - 22363 (source: NCBI BLink).","sp|Q9SIT1|TMK3_ARATH","Receptor-like kinase TMK3","gi|168019732|ref|XP_001762398.1|",{"$nulls":4},{"v":6.05529404170051,"d":"6.06"},{"v":5.17933333377421,"d":"5.18"},{"v":3.1151697922303,"d":"3.12"},{"v":3.95832640220868,"d":"3.96"}]
["g780.t1","0006655:0009793:0019252:0009902:0000023:0018023:0016226:0019288:0034660:0009073:0010027",16279,9570,"phosphatidylglycerol biosynthetic process:embryo development ending in seed dormancy:starch biosynthetic process:chloroplast relocation:maltose metabolic process:peptidyl-lysine trimethylation:iron-sulfur cluster assembly:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:ncRNA metabolic process:aromatic amino acid family biosynthetic process:thylakoid membrane organization","protein-lysine N-methyltransferase activity","chloroplast stroma","ARATHwo_AT1G14030.1","Encodes a lysine methyltransferase whose main soluble physiological substrates are chloroplastic fructose 1,6-bisphosphate aldolases, FBA1, FBA2, and FBA3. Lysines near the C-terminal end of the target proteins are trimethylated.","sp|Q9XI84|RBCMT_ARATH","[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic","gi|168067849|ref|XP_001785817.1|",{"$nulls":4},{"v":16.1456299553113,"d":"16.15"},{"v":8.38421068413384,"d":"8.38"},{"v":4.39297713801493,"d":"4.39"},{"v":5.82149805168704,"d":"5.82"}]
["g781.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P10272|POL_BAEVM","Pol polyprotein","gi|359372825|gb|AEV42258.1|",{"$nulls":4},{"v":0.302180275187708,"d":"0.30"},{"v":0.858334221253328,"d":"0.86"},{"v":0.189095882594546,"d":"0.19"},{"v":4.17670334136104,"d":"4.18"},null,"X"]
["g782.t1"]
["g783.t1",{"$nulls":6},"ARATHwo_AT2G25570.1","binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 3445 Blast hits to 2037 proteins in 553 species: Archae - 0; Bacteria - 2582; Metazoa - 139; Fungi - 7; Plants - 69; Viruses - 6; Other Eukaryotes - 642 (source: NCBI BLink).","sp|Q5UP92|YL018_MIMIV","Putative sel1-like repeat-containing protein L18","gi|720012063|ref|XP_010259758.1|",null,null,"x","x",{"v":4.63169060946966,"d":"4.63"},{"v":1.98812848688293,"d":"1.99"},{"v":1.56606892684285,"d":"1.57"},{"v":1.10464007559455,"d":"1.10"}]
["g784.t1"]
["g785.t1",{"$nulls":13},"x","x",{"v":4.39818752739113,"d":"4.40"},{"v":3.88565561388368,"d":"3.89"},{"v":3.08181268715215,"d":"3.08"},{"v":2.84887775275649,"d":"2.85"}]
["g786.t1","0006468:0051301","0008353:0030246:0005524",5886,"protein phosphorylation:cell division","RNA polymerase II carboxy-terminal domain kinase activity:carbohydrate binding:ATP binding","plasma membrane","ARATHwo_AT1G53050.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G09600.1); Has 124596 Blast hits to 123234 proteins in 4130 species: Archae - 92; Bacteria - 13981; Metazoa - 46101; Fungi - 12764; Plants - 31065; Viruses - 453; Other Eukaryotes - 20140 (source: NCBI BLink).","sp|Q9ZVM9|Y1461_ARATH","Probable serine/threonine-protein kinase At1g54610","gi|586699379|ref|XP_006844562.1|",null,null,"x","x",{"v":2.72527144475782,"d":"2.73"},{"v":4.91791741019481,"d":"4.92"},{"v":4.86263720936852,"d":"4.86"},{"v":6.32149199574837,"d":"6.32"}]
["g787.t1"]
["g788.t1","0006259:0019538","0016772:0003676",null,"DNA metabolic process:protein metabolic process","transferase activity, transferring phosphorus-containing groups:nucleic acid binding",null,"ARATHwo_AT2G34300.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G29470.2); Has 54799 Blast hits to 24520 proteins in 1584 species: Archae - 172; Bacteria - 14723; Metazoa - 14369; Fungi - 4484; Plants - 2850; Viruses - 543; Other Eukaryotes - 17658 (source: NCBI BLink).","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|374081772|dbj|BAL46523.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.663325216386288,"d":"0.66"},{"v":0.0482447558329343,"d":"0.05"},null,"X"]
["g789.t1",7034,null,null,"vacuolar transport",null,null,"ARATHwo_AT1G17730.1","Encodes an ESCRT-related protein: CHMP1A/AT1G73030; CHMP1B/AT1G17730. CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development. ESCRT: Endosomal Sorting Complexes Required For Transport machinery; CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein.","sp|Q8LE58|CHM1A_ARATH","ESCRT-related protein CHMP1A","gi|168015068|ref|XP_001760073.1|",null,null,"x","x",{"v":43.3860889049602,"d":"43.39"},{"v":15.1190975352739,"d":"15.12"},{"v":15.9354940437823,"d":"15.94"},{"v":10.2046166468243,"d":"10.20"}]
["g790.t1",{"$nulls":13},"x","x",{"v":15.2636411325367,"d":"15.26"},{"v":6.562764937373,"d":"6.56"},{"v":11.4345344468939,"d":"11.43"},{"v":26.4515924522892,"d":"26.45"}]
["g791.t1",{"$nulls":6},"ARATHwo_AT1G21410.1","AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.","sp|Q9LPL4|SKP2A_ARATH","F-box protein SKP2A","gi|302819204|ref|XP_002991273.1|",null,null,"x","x",{"v":2.59322219405233,"d":"2.59"},{"v":3.49009856960843,"d":"3.49"},{"v":5.96817022296139,"d":"5.97"},{"v":17.5815478810919,"d":"17.58"}]
["g792.t1","0006351:0050789",3824,null,"transcription, DNA-dependent:regulation of biological process","catalytic activity",null,"ARATHwo_AT3G04740.1","encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors.","sp|Q9SR02|MED14_ARATH","Mediator of RNA polymerase II transcription subunit 14","gi|302784728|ref|XP_002974136.1|",{"$nulls":4},{"v":0.288932857079146,"d":"0.29"},{"v":1.37517727812749,"d":"1.38"},{"v":7.23810604790245,"d":"7.24"},{"v":4.01469609831311,"d":"4.01"}]
["g793.t1"]
["g794.t1","0009653:0009791:0048608:0016573",5488,null,"anatomical structure morphogenesis:post-embryonic development:reproductive structure development:histone acetylation","binding",null,"ARATHwo_AT3G01460.1","Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes.","sp|Q9SGH2|MBD9_ARATH","Methyl-CpG-binding domain-containing protein 9","gi|685267848|ref|XP_009125020.1|",{"$nulls":4},{"v":2.75807031737651,"d":"2.76"},{"v":3.60187126561614,"d":"3.60"},{"v":12.5704932402415,"d":"12.57"},{"v":5.66793072519377,"d":"5.67"}]
["g795.t1"]
["g796.t1",{"$nulls":15},{"v":6.73830134736958,"d":"6.74"},{"v":3.87850780227803,"d":"3.88"},{"v":3.07741102180629,"d":"3.08"},{"v":1.71325569390125,"d":"1.71"}]
["g797.t1",{"$nulls":13},"x","x",{"v":15.3103331321162,"d":"15.31"},{"v":9.0600694024806,"d":"9.06"},{"v":6.1091613168869,"d":"6.11"},{"v":2.70362161290977,"d":"2.70"}]
["g798.t1","0009987:0016192:0044699:0046907:0015031",null,"0043231:0031410:0030117","cellular process:vesicle-mediated transport:single-organism process:intracellular transport:protein transport",null,"intracellular membrane-bounded organelle:cytoplasmic vesicle:membrane coat","ARATHwo_AT3G55480.2","Encodes PAT2, a putative beta-subunit of adaptor protein complex 3 (AP-3) that can partially complement the corresponding yeast mutant. Mediates the biogenesis and function of lytic vacuoles.","sp|Q556J8|AP3B_DICDI","AP-3 complex subunit beta","gi|168022360|ref|XP_001763708.1|",null,null,"x","x",{"v":1.8933446516403,"d":"1.89"},{"v":2.72998917697341,"d":"2.73"},{"v":1.69348666240493,"d":"1.69"},{"v":1.21402957446018,"d":"1.21"}]
["g799.t1","0006950:0006099:0006102","0051287:0004450:0000287","0009570:0009534:0005739","response to stress:tricarboxylic acid cycle:isocitrate metabolic process","NAD binding:isocitrate dehydrogenase (NADP+) activity:magnesium ion binding","chloroplast stroma:chloroplast thylakoid:mitochondrion","ARATHwo_AT1G65930.1","Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.","sp|Q06197|IDHC_SOYBN","Isocitrate dehydrogenase [NADP]","gi|168052755|ref|XP_001778805.1|",null,null,"x","x",{"v":33.0562396842747,"d":"33.06"},{"v":36.6705751574774,"d":"36.67"},{"v":20.5261040615397,"d":"20.53"},{"v":24.1122420889618,"d":"24.11"}]
["g800.t1","0044763:0044765:0007005:0008535",46872,"0005739:0016020","single-organism cellular process:single-organism transport:mitochondrion organization:respiratory chain complex IV assembly","metal ion binding","mitochondrion:membrane","ARATHwo_AT3G08950.1","Encodes HCC1, homologue of the copper chaperone SCO1 (synthesis of cytochrome c oxidase 1) from the yeast Saccharomyces cerevisiae. SCO1 encodes a mitochondrial protein that is essential for the correct assembly of complex IV in the respiratory chain. HCC1 is localized in the mitochondrion. A chimeric yeast Sco1-Arabidopsis HCC1 protein complements yeast Sco1 activity. Embryos of hcc1 mutants became arrested at various developmental stages, mostly at the heart stage.","sp|Q8VYP0|SCO11_ARATH","Protein SCO1 homolog 1, mitochondrial","gi|242064104|ref|XP_002453341.1|",null,null,"x","x",{"v":4.76429338157006,"d":"4.76"},{"v":1.42269379263501,"d":"1.42"},{"v":0.325235004527,"d":"0.33"},{"v":10.4153474792075,"d":"10.42"}]
["g801.t1",6259,5488,null,"DNA metabolic process","binding",null,"ARATHwo_AT3G14590.2","NTMC2T6.2; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G53590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|727651886|ref|XP_010496662.1|",{"$nulls":4},{"v":1.3353536880026,"d":"1.34"},{"v":1.63304823213218,"d":"1.63"},{"v":0.875413577167804,"d":"0.88"},{"v":0.223757729923923,"d":"0.22"},null,"X"]
["g802.t1",{"$nulls":10},"gi|471868891|emb|CCO37294.1|",{"$nulls":4},{"v":0.0625665131143819,"d":"0.06"},{"v":0.270070345492436,"d":"0.27"},{"v":0.895493311874123,"d":"0.90"},{"v":0.118965935672305,"d":"0.12"},"X"]
["g803.t1",{"$nulls":13},"x","x",{"v":1.93653958102815,"d":"1.94"},{"v":2.25810280997728,"d":"2.26"},{"v":0.409533540824135,"d":"0.41"},{"v":1.31379202949811,"d":"1.31"}]
["g804.t1","0060560:0044707:0034645:0000271:0048869:0016049:0010411","0042285:0005488",44431,"developmental growth involved in morphogenesis:single-multicellular organism process:cellular macromolecule biosynthetic process:polysaccharide biosynthetic process:cellular developmental process:cell growth:xyloglucan metabolic process","xylosyltransferase activity:binding","Golgi apparatus part","ARATHwo_AT4G02500.1","Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.","sp|O22775|XXT2_ARATH","Xyloglucan 6-xylosyltransferase 2","gi|168034676|ref|XP_001769838.1|",null,null,"x","x",{"v":3.00877331960724,"d":"3.01"},{"v":17.1326686843094,"d":"17.13"},{"v":7.49693717544963,"d":"7.50"},{"v":8.64492563079942,"d":"8.64"}]
["g805.t1",null,null,16020,null,null,"membrane","ARATHwo_AT1G22050.1","membrane-anchored ubiquitin-fold protein 6 precursor (MUB6); CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 5 precursor (TAIR:AT1G77870.1); Has 161 Blast hits to 161 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|Q6Z8K4|MUB3_ORYSJ","Membrane-anchored ubiquitin-fold protein 3","gi|115448707|ref|NP_001048133.1|",null,null,"x","x",{"v":3.74017226467509,"d":"3.74"},{"v":1.51994902750058,"d":"1.52"},{"v":6.15448635987202,"d":"6.15"},{"v":7.43181364091411,"d":"7.43"}]
["g806.t1",{"$nulls":13},"x","x",{"v":5.50984383394928,"d":"5.51"},{"v":4.9653851614699,"d":"4.97"},{"v":8.90896353132063,"d":"8.91"},{"v":10.4729791270213,"d":"10.47"}]
["g807.t1",{"$nulls":6},"ARATHwo_AT1G04600.1","member of Myosin-like proteins","sp|Q258K2|MYH9_CANLF","Myosin-9",{"$nulls":5},{"v":0.272479938944381,"d":"0.27"},{"v":3.17640528800528,"d":"3.18"},{"v":2.49694785067074,"d":"2.50"},{"v":0.854606613838597,"d":"0.85"}]
["g808.t2",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.311616259955725,"d":"0.31"},{"v":0.593608829933131,"d":"0.59"},{"v":0.332145472353011,"d":"0.33"}]
["g808.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|242826075|ref|XP_002488568.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.311616259955725,"d":"0.31"},{"v":0.593608829933131,"d":"0.59"},{"v":0.332145472353011,"d":"0.33"},null,"X"]
["g809.t1",{"$nulls":6},"ARATHwo_AT4G32920.1","glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|727548900|ref|XP_010447318.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":1.52691047330205,"d":"1.53"},{"v":0.778254912902878,"d":"0.78"},{"v":0.268716297690517,"d":"0.27"}]
["g810.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0.0171808814927015,"d":"0.02"},{"v":0.016730124591376,"d":"0.02"},{"v":0.251140080001297,"d":"0.25"},{"v":0.252106177349857,"d":"0.25"},null,"X"]
["g811.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|115479893|ref|NP_001063540.1|",{"$nulls":4},{"v":1.85814900449049,"d":"1.86"},{"v":0.757988992657576,"d":"0.76"},{"v":0.605197702389064,"d":"0.61"},{"v":0.537641668811223,"d":"0.54"},null,"X"]
["g812.t1",{"$nulls":15},{"v":0.236391062725962,"d":"0.24"},{"v":0.156186054878471,"d":"0.16"},{"v":0.124462632531754,"d":"0.12"},{"v":0,"d":"0.00"}]
["g813.t1",{"$nulls":6},"ARATHwo_AT4G32980.1","Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.310241762207191,"d":"0.31"},{"v":0.114559056223398,"d":"0.11"},{"v":0.359754794854051,"d":"0.36"}]
["g814.t1",{"$nulls":10},"gi|401404520|ref|XP_003881743.1|",null,null,"x","x",{"v":1.19856599280162,"d":"1.20"},{"v":5.16684734885686,"d":"5.17"},{"v":5.09657719627676,"d":"5.10"},{"v":7.63632369818358,"d":"7.64"}]
["g814.t2",{"$nulls":8},"sp|Q60675|LAMA2_MOUSE","Laminin subunit alpha-2","gi|401404520|ref|XP_003881743.1|",null,null,"x","x",{"v":1.19856599280162,"d":"1.20"},{"v":5.16684734885686,"d":"5.17"},{"v":5.09657719627676,"d":"5.10"},{"v":7.63632369818358,"d":"7.64"}]
["g815.t1",{"$nulls":15},{"v":4.44760935905711,"d":"4.45"},{"v":2.19252827755388,"d":"2.19"},{"v":0.493434872505638,"d":"0.49"},{"v":1.12543022344233,"d":"1.13"}]
["g816.t1",{"$nulls":6},"ARATHwo_AT1G11720.2","Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).","sp|F4IAG2|SSY3_ARATH","Starch synthase 3, chloroplastic/amyloplastic"]
["g817.t1",{"$nulls":15},{"v":0.138592789771463,"d":"0.14"},{"v":1.38319846643801,"d":"1.38"},{"v":0.0711207100431833,"d":"0.07"},{"v":23.2749958358568,"d":"23.27"}]
["g818.t1",44237,16787,null,"cellular metabolic process","hydrolase activity",null,"ARATHwo_AT1G78090.1","homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases","sp|Q9C9S4|TPPB_ARATH","Trehalose-phosphate phosphatase B","gi|168047415|ref|XP_001776166.1|",{"$nulls":4},{"v":103.307628038087,"d":"103.31"},{"v":41.2163464186249,"d":"41.22"},{"v":41.8400058371174,"d":"41.84"},{"v":27.1285577712961,"d":"27.13"}]
["g819.t1"]
["g820.t1",{"$nulls":10},"gi|168059844|ref|XP_001781910.1|"]
["g821.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|390339193|ref|XP_795639.3|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0769635938088787,"d":"0.08"},{"v":0.198770431391994,"d":"0.20"},{"v":0,"d":"0.00"},null,"X"]
["g822.t1",{"$nulls":19},"X",null,"X"]
["g823.t1",{"$nulls":8},"sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.228136805678338,"d":"0.23"},{"v":0.200019030620664,"d":"0.20"},"X"]
["g824.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.103135274407471,"d":"0.10"},"X"]
["g825.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0.0195567871456021,"d":"0.02"},{"v":0.117103229013427,"d":"0.12"},{"v":0.25601396120154,"d":"0.26"},{"v":0.163431760497364,"d":"0.16"},"X"]
["g826.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|847115053|ref|XP_012815548.1|"]
["g827.t1",{"$nulls":13},"x","x",{"v":0.0144630205212316,"d":"0.01"},{"v":0,"d":"0.00"},{"v":0.0293960041102778,"d":"0.03"},{"v":15.4350942892505,"d":"15.44"}]
["g828.t1"]
["g54140.t1",{"$nulls":8},"sp|Q9NQ35|NRIP3_HUMAN","Nuclear receptor-interacting protein 3","gi|780634665|ref|XP_011686344.1|",{"$nulls":8},"X"]
["g54141.t1"]
["g54142.t1"]
["g54143.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|731387554|ref|XP_010649296.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.00962189230971523,"d":"0.01"},{"v":0.0105910659382624,"d":"0.01"},{"v":0,"d":"0.00"},null,"X"]
["g54144.t1","0016042:0046470",null,44464,"lipid catabolic process:phosphatidylcholine metabolic process",null,"cell part","ARATHwo_AT3G15730.1","Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis.","sp|P93400|PLDA1_TOBAC","Phospholipase D alpha 1","gi|403399488|sp|P86387.1|PLDA1_CARPA"]
["g54145.t1",9987,16301,null,"cellular process","kinase activity",null,"ARATHwo_AT3G02810.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G16500.1); Has 153092 Blast hits to 133237 proteins in 4793 species: Archae - 164; Bacteria - 24814; Metazoa - 52285; Fungi - 12626; Plants - 34968; Viruses - 826; Other Eukaryotes - 27409 (source: NCBI BLink).","sp|Q8RWW0|ALE2_ARATH","Receptor-like serine/threonine-protein kinase ALE2","gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":0.217854922380569,"d":"0.22"},{"v":0.041700202221176,"d":"0.04"},{"v":0.227377518497055,"d":"0.23"},{"v":0.118356677656384,"d":"0.12"}]
["g54146.t1",{"$nulls":13},"x","x",{"v":2.00154003895848,"d":"2.00"},{"v":1.24990690669734,"d":"1.25"},{"v":0.596256474415015,"d":"0.60"},{"v":0,"d":"0.00"}]
["g54147.t1",{"$nulls":10},"gi|170093898|ref|XP_001878170.1|",{"$nulls":4},{"v":2.60882980892383,"d":"2.61"},{"v":0.724422677371855,"d":"0.72"},{"v":1.31127965156348,"d":"1.31"},{"v":0.820172739400833,"d":"0.82"},"X"]
["g54148.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT4G15180.1","SET domain protein 2 (SDG2); EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (TAIR:AT1G77300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|O23372|ATXR3_ARATH","Histone-lysine N-methyltransferase ATXR3","gi|729318126|ref|XP_010532490.1|",null,null,"x","x",{"v":0.482393587618435,"d":"0.48"},{"v":3.79823119745342,"d":"3.80"},{"v":8.97940106101233,"d":"8.98"},{"v":4.16396451675285,"d":"4.16"}]
["g54149.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.432747275234478,"d":"0.43"},{"v":0.31720339310397,"d":"0.32"}]
["g54150.t1",{"$nulls":11},"x",{"$nulls":3},{"v":8.49036511980463,"d":"8.49"},{"v":16.2453235316551,"d":"16.25"},{"v":5.00000969936482,"d":"5.00"},{"v":8.52464877027193,"d":"8.52"}]
["g54151.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|302799607|ref|XP_002981562.1|",{"$nulls":4},{"v":0.0766328066819574,"d":"0.08"},{"v":0.2196787927898,"d":"0.22"},{"v":0.361488516222069,"d":"0.36"},{"v":0.285169561856733,"d":"0.29"},null,"X"]
["g54152.t1"]
["g54153.t1",{"$nulls":15},{"v":0.890170910794872,"d":"0.89"},{"v":2.58191798338722,"d":"2.58"},{"v":0.139203608323737,"d":"0.14"},{"v":0.454508193116233,"d":"0.45"}]
["g54154.t1",{"$nulls":6},"ARATHwo_AT1G06840.1","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1); Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155; Bacteria - 17954; Metazoa - 60073; Fungi - 10970; Plants - 82493; Viruses - 385; Other Eukaryotes - 22423 (source: NCBI BLink).","sp|C0LGD7|Y1684_ARATH","Probable LRR receptor-like serine/threonine-protein kinase At1g06840","gi|674910329|emb|CDY22874.1|",{"$nulls":4},{"v":0.344189691268522,"d":"0.34"},{"v":0.10628031360884,"d":"0.11"},{"v":0,"d":"0.00"},{"v":0.305876474881748,"d":"0.31"}]
["g54155.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.06400137365232,"d":"0.06"},{"v":0,"d":"0.00"}]
["g54156.t1"]
["g54157.t1"]
["g54158.t1"]
["g54159.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0280798942864268,"d":"0.03"},{"v":0.117224835092669,"d":"0.12"},{"v":0,"d":"0.00"}]
["g80039.t1",6865,null,"0044446:0005794:0005886","amino acid transport",null,"intracellular organelle part:Golgi apparatus:plasma membrane","ARATHwo_AT1G79450.1","ALA-interacting subunit 5 (ALIS5); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, plasma membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G16360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8L8W0|ALIS5_ARATH","ALA-interacting subunit 5","gi|168009826|ref|XP_001757606.1|",null,null,"x","x",{"v":1.2226638223308,"d":"1.22"},{"v":5.06446656434491,"d":"5.06"},{"v":0.842592774423984,"d":"0.84"},{"v":5.11163632582719,"d":"5.11"}]
["g54160.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.774527274511345,"d":"0.77"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54161.t1",{"$nulls":10},"gi|147783452|emb|CAN75210.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0667851480072017,"d":"0.07"},{"v":0.722710016392807,"d":"0.72"},{"v":0.21772011306086,"d":"0.22"},"X"]
["g54162.t1",{"$nulls":6},"ARATHwo_AT3G24300.1","Encodes a plasma membrane localized ammonium transporter.","sp|O04161|AMT12_SOLLC","Ammonium transporter 1 member 2","gi|823195743|ref|XP_012492715.1|",{"$nulls":4},{"v":4.65994539383415,"d":"4.66"},{"v":1.45587175608327,"d":"1.46"},{"v":0.375232695637817,"d":"0.38"},{"v":6.52846317496952,"d":"6.53"}]
["g80055.t1",{"$nulls":13},"x","x",{"v":9.86852023331373,"d":"9.87"},{"v":16.5280692115848,"d":"16.53"},{"v":8.62277428470789,"d":"8.62"},{"v":5.82241615428402,"d":"5.82"},"X",null,"X"]
["g54297.t1"]
["g54298.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0634607549550543,"d":"0.06"},{"v":0.539999189309015,"d":"0.54"},{"v":0.339873570618561,"d":"0.34"},"X",null,"X"]
["g54299.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.203808492405564,"d":"0.20"},{"v":0,"d":"0.00"}]
["g54300.t1",{"$nulls":19},"X",null,"X"]
["g54301.t1",{"$nulls":13},"x","x",{"v":3.20158391110737,"d":"3.20"},{"v":10.1208388919869,"d":"10.12"},{"v":18.458967004033,"d":"18.46"},{"v":6.04431714290191,"d":"6.04"}]
["g54302.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.065339657189607,"d":"0.07"},{"v":0,"d":"0.00"},"X",null,"X"]
["g80089.t1",{"$nulls":15},{"v":0.168976746296931,"d":"0.17"},{"v":0.377591542407671,"d":"0.38"},{"v":1.69622169336237,"d":"1.70"},{"v":0.365057107527544,"d":"0.37"},"X",null,"X"]
["g54303.t1",6468,"0005524:0004674",null,"protein phosphorylation","ATP binding:protein serine/threonine kinase activity",null,"ARATHwo_AT1G01540.2","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G01330.1); Has 118949 Blast hits to 117566 proteins in 4483 species: Archae - 118; Bacteria - 14365; Metazoa - 43793; Fungi - 9783; Plants - 32976; Viruses - 455; Other Eukaryotes - 17459 (source: NCBI BLink).","sp|Q3EDL4|Y1154_ARATH","Probable serine/threonine-protein kinase At1g01540","gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":0.22994909785885,"d":"0.23"},{"v":2.08950049896431,"d":"2.09"},{"v":0.715501459745126,"d":"0.72"},{"v":0,"d":"0.00"}]
["g54304.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0668447132389638,"d":"0.07"},{"v":0.269098502141176,"d":"0.27"},{"v":0.0389320205730877,"d":"0.04"},null,"X"]
["g54305.t1",{"$nulls":20},"X","X"]
["g54306.t1"]
["g54307.t1",16310,"0004672:0000166",null,"phosphorylation","protein kinase activity:nucleotide binding",null,"ARATHwo_AT4G32710.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|O65530|PEK14_ARATH","Proline-rich receptor-like protein kinase PERK14","gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":0.641161708644889,"d":"0.64"},{"v":2.25378027964665,"d":"2.25"},{"v":1.01727992219426,"d":"1.02"},{"v":0.391553530327825,"d":"0.39"}]
["g54308.t1",{"$nulls":15},{"v":0.554012377228137,"d":"0.55"},{"v":3.17172681427655,"d":"3.17"},{"v":14.5703992165932,"d":"14.57"},{"v":0.284881777696527,"d":"0.28"}]
["g54309.t1",{"$nulls":6},"ARATHwo_AT3G50360.1","centrin2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin 2 (TAIR:AT4G37010.2); Has 32825 Blast hits to 20606 proteins in 1695 species: Archae - 1; Bacteria - 190; Metazoa - 13563; Fungi - 7187; Plants - 7027; Viruses - 2; Other Eukaryotes - 4855 (source: NCBI BLink).","sp|Q24956|CATR_GIAIN","Caltractin","gi|403348175|gb|EJY73520.1|",{"$nulls":4},{"v":0.146569600299079,"d":"0.15"},{"v":0.0947290635937224,"d":"0.09"},{"v":22.4022133832645,"d":"22.40"},{"v":0.0554921804548807,"d":"0.06"}]
["g54310.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":3.12116687162315,"d":"3.12"},{"v":0,"d":"0.00"}]
["g54311.t1",{"$nulls":8},"sp|Q5PPR6|CB5D1_XENLA","Cytochrome b5 domain-containing protein 1","gi|302779926|ref|XP_002971738.1|",null,null,"x","x",{"v":7.13782028883274,"d":"7.14"},{"v":13.8457191220732,"d":"13.85"},{"v":102.292058489689,"d":"102.29"},{"v":1.73915235151561,"d":"1.74"}]
["g54312.t1",6259,"0046872:0003824",null,"DNA metabolic process","metal ion binding:catalytic activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|359372825|gb|AEV42258.1|",{"$nulls":4},{"v":0.0616630622306193,"d":"0.06"},{"v":0.198782428030537,"d":"0.20"},{"v":5.61053761604478,"d":"5.61"},{"v":0.634193372153526,"d":"0.63"},null,"X"]
["g54313.t1",{"$nulls":6},"ARATHwo_AT3G53270.1","Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","sp|Q8K0S9|SNPC1_MOUSE","snRNA-activating protein complex subunit 1","gi|470134096|ref|XP_004302892.1|",null,null,"x","x",{"v":0.842802259007316,"d":"0.84"},{"v":0.103546283578697,"d":"0.10"},{"v":0.498420638411446,"d":"0.50"},{"v":0.43283012101734,"d":"0.43"}]
["g54314.t1",34968,null,44424,"histone lysine methylation",null,"intracellular part","ARATHwo_AT4G29830.1","The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin.","sp|Q9SZQ5|VIP3_ARATH","WD repeat-containing protein VIP3","gi|802628186|ref|XP_012076991.1|",null,null,"x","x",{"v":11.248600770273,"d":"11.25"},{"v":3.16301557591032,"d":"3.16"},{"v":2.70549993387898,"d":"2.71"},{"v":3.39941549167509,"d":"3.40"}]
["g54315.t1","0034968:0009909:0048449",null,"0005635:0005783","histone lysine methylation:regulation of flower development:floral organ formation",null,"nuclear envelope:endoplasmic reticulum","ARATHwo_AT3G56900.1","Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 4015 Blast hits to 2516 proteins in 309 species: Archae - 52; Bacteria - 1176; Metazoa - 1329; Fungi - 813; Plants - 363; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).","sp|Q8GWR1|AAAS_ARATH","Aladin","gi|215768787|dbj|BAH01016.1|",{"$nulls":4},{"v":17.613765364189,"d":"17.61"},{"v":9.07712999405149,"d":"9.08"},{"v":6.07896852813239,"d":"6.08"},{"v":14.0978119703945,"d":"14.10"}]
["g54316.t1",44763,null,null,"single-organism cellular process",null,null,"ARATHwo_AT3G45050.2","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|116779021|gb|ABK21103.1|",null,"x",null,"x",{"v":19.5001836008641,"d":"19.50"},{"v":5.69334436921183,"d":"5.69"},{"v":3.68611739807063,"d":"3.69"},{"v":1.16297947237657,"d":"1.16"}]
["g54317.t1",{"$nulls":15},{"v":4.38459282400256,"d":"4.38"},{"v":1.92844928361096,"d":"1.93"},{"v":4.63679674345871,"d":"4.64"},{"v":3.72976999320721,"d":"3.73"},null,"X","X"]
["g54318.t1"]
["g54319.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|31712076|gb|AAP68381.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.169916784947244,"d":"0.17"},{"v":0,"d":"0.00"},"X"]
["g54320.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0682876922537423,"d":"0.07"},{"v":0.077165159571355,"d":"0.08"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54321.t1",{"$nulls":15},{"v":0.238788051371914,"d":"0.24"},{"v":0,"d":"0.00"},{"v":0.122460643622437,"d":"0.12"},{"v":0,"d":"0.00"}]
["g80104.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|861622265|gb|KMQ87704.1|",{"$nulls":8},"X"]
["g54322.t1",null,null,16020,null,null,"membrane","ARATHwo_AT3G20920.1","translocation protein-related; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocation protein Sec62 (InterPro:IPR004728); Has 251 Blast hits to 251 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 63; Plants - 45; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).","sp|O13787|SEC62_SCHPO","Translocation protein sec62","gi|294463396|gb|ADE77229.1|",null,null,"x","x",{"v":13.8063836850827,"d":"13.81"},{"v":11.8246963325735,"d":"11.82"},{"v":18.5236837006081,"d":"18.52"},{"v":19.3087439257299,"d":"19.31"}]
["g54323.t1",{"$nulls":8},"sp|P9WMX1|MFTF_MYCTU","Putative mycofactocin biosynthesis glycosyltransferase MftF","gi|168013813|ref|XP_001759461.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.355207284112279,"d":"0.36"},{"v":0.0809520018757743,"d":"0.08"},{"v":0.522012465778281,"d":"0.52"}]
["g54324.t1",{"$nulls":6},"ARATHwo_AT1G43260.1","hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|719975379|ref|XP_010247476.1|",{"$nulls":4},{"v":0.0495396531587521,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.366714229891793,"d":"0.37"},{"v":0.234526732987466,"d":"0.23"}]
["g54325.t1",8152,46872,null,"metabolic process","metal ion binding",null,"ARATHwo_AT4G00990.1","Transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 966 Blast hits to 671 proteins in 113 species: Archae - 0; Bacteria - 8; Metazoa - 538; Fungi - 54; Plants - 301; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).","sp|Q9SSE9|JMJ25_ARATH","Lysine-specific demethylase JMJ25","gi|802600232|ref|XP_012072836.1|",null,null,"x","x",{"v":13.7553973019712,"d":"13.76"},{"v":32.657804434527,"d":"32.66"},{"v":36.8556995869364,"d":"36.86"},{"v":51.2261694710482,"d":"51.23"}]
["g54326.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g54327.t1",{"$nulls":10},"gi|568440035|ref|XP_006455814.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.193500587665465,"d":"0.19"},{"v":0.18389715591977,"d":"0.18"},{"v":0,"d":"0.00"},"X"]
["g54328.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.345800849245943,"d":"0.35"},{"v":1.10136477364899,"d":"1.10"},{"v":0,"d":"0.00"},"X",null,"X"]
["g829.t1"]
["g830.t1","0006203:0046061:0045088:0051607","0008832:0003723:0008270:0032567",5634,"dGTP catabolic process:dATP catabolic process:regulation of innate immune response:defense response to virus","dGTPase activity:RNA binding:zinc ion binding:dGTP binding","nucleus",null,null,"sp|Q58554|Y1154_METJA","Uncharacterized protein MJ1154","gi|768964270|ref|XP_011619967.1|",null,null,"x","x",{"v":0.0774974836574693,"d":"0.08"},{"v":0.493852667216464,"d":"0.49"},{"v":2.65621402178914,"d":"2.66"},{"v":5.41632536500429,"d":"5.42"}]
["g831.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|923770824|ref|XP_013679514.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.102876323087675,"d":"0.10"},{"v":0.122075590438,"d":"0.12"},{"v":0.105487693133205,"d":"0.11"},null,"X"]
["g832.t1",{"$nulls":6},"ARATHwo_AT5G40270.1","HD domain-containing metal-dependent phosphohydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: HD domain-containing metal-dependent phosphohydrolase family protein (TAIR:AT5G40290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|B0G107|SAMH1_DICDI","Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog","gi|168046195|ref|XP_001775560.1|",null,null,"x","x"]
["g833.t1","0048481:0006431","0004825:0005524","0005829:0005739:0009570","ovule development:methionyl-tRNA aminoacylation","methionine-tRNA ligase activity:ATP binding","cytosol:mitochondrion:chloroplast stroma","ARATHwo_AT3G55400.1","OVULE ABORTION 1 (OVA1); FUNCTIONS IN: methionine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 26528 Blast hits to 25030 proteins in 3018 species: Archae - 991; Bacteria - 17017; Metazoa - 429; Fungi - 593; Plants - 193; Viruses - 3; Other Eukaryotes - 7302 (source: NCBI BLink).","sp|Q9M2T9|SYMM_ARATH","Methionine--tRNA ligase, chloroplastic/mitochondrial","gi|168023212|ref|XP_001764132.1|",{"$nulls":4},{"v":5.03221981626595,"d":"5.03"},{"v":9.25469338573594,"d":"9.25"},{"v":3.70367240495288,"d":"3.70"},{"v":2.8814288693305,"d":"2.88"}]
["g834.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727496944|ref|XP_010424558.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.101404330926426,"d":"0.10"},{"v":0.366477431793956,"d":"0.37"},{"v":0.203398772729283,"d":"0.20"},"X"]
["g835.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.377744908438172,"d":"0.38"},{"v":0,"d":"0.00"}]
["g836.t1",{"$nulls":20},"X","X"]
["g837.t1"]
["g838.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.034512256069388,"d":"0.03"},{"v":0,"d":"0.00"}]
["g839.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":5},{"v":0.328817603662917,"d":"0.33"},{"v":1.18789739191104,"d":"1.19"},{"v":5.56957228302301,"d":"5.57"},{"v":2.33267082149206,"d":"2.33"}]
["g840.t1",{"$nulls":6},"ARATHwo_AT5G44210.1","encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.","sp|Q9FE67|ERF80_ARATH","Ethylene-responsive transcription factor 9","gi|168006813|ref|XP_001756103.1|",{"$nulls":4},{"v":2.18164030056682,"d":"2.18"},{"v":1.93843028583149,"d":"1.94"},{"v":1.48265140969462,"d":"1.48"},{"v":4.00842739551665,"d":"4.01"}]
["g841.t1"]
["g842.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).","sp|O75132|ZBED4_HUMAN","Zinc finger BED domain-containing protein 4","gi|242048416|ref|XP_002461954.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0189401806800651,"d":"0.02"},{"v":0.0834995149748303,"d":"0.08"},{"v":0,"d":"0.00"}]
["g843.t1",{"$nulls":19},"X",null,"X"]
["g844.t1",{"$nulls":10},"gi|168002008|ref|XP_001753706.1|"]
["g845.t1",{"$nulls":19},"X",null,"X"]
["g846.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.120700158755099,"d":"0.12"},{"v":0,"d":"0.00"}]
["g847.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.136887720856054,"d":"0.14"},{"v":0,"d":"0.00"},null,"X","X"]
["g848.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.497673232929677,"d":"0.50"},{"v":0,"d":"0.00"},"X",null,"X"]
["g849.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.251067422919707,"d":"0.25"},{"v":0,"d":"0.00"},null,"X"]
["g850.t1"]
["g851.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3","gi|302821517|ref|XP_002992421.1|","x"]
["g852.t1",{"$nulls":15},{"v":5.74699006367367,"d":"5.75"},{"v":6.69225381417002,"d":"6.69"},{"v":8.49329089403313,"d":"8.49"},{"v":2.39956530247912,"d":"2.40"}]
["g853.t1"]
["g854.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.129619684698589,"d":"0.13"},{"v":0.197104899611848,"d":"0.20"},{"v":0.141225557983681,"d":"0.14"}]
["g855.t1",null,"0003682:0003677",null,null,"chromatin binding:DNA binding",null,"ARATHwo_AT1G01520.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1311 Blast hits to 1300 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 0; Plants - 1067; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).","sp|Q6R0H0|RVE3_ARATH","Protein REVEILLE 3","gi|702327223|ref|XP_010053760.1|",null,null,"x","x",{"v":15.6107079537736,"d":"15.61"},{"v":4.47978744132032,"d":"4.48"},{"v":4.33403307412335,"d":"4.33"},{"v":3.34892944429206,"d":"3.35"}]
["g856.t2",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595441411|gb|EXX53826.1|"]
["g856.t1",{"$nulls":10},"gi|595441411|gb|EXX53826.1|",{"$nulls":8},"X"]
["g857.t1",{"$nulls":8},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|595441411|gb|EXX53826.1|",{"$nulls":8},"X"]
["g858.t1",6468,"0005524:0004674",null,"protein phosphorylation","ATP binding:protein serine/threonine kinase activity",null,"ARATHwo_AT5G35980.1","yeast YAK1-related gene 1 (YAK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q8BI55|DYRK4_MOUSE","Dual specificity tyrosine-phosphorylation-regulated kinase 4","gi|302755592|ref|XP_002961220.1|",{"$nulls":4},{"v":0.0341323734191399,"d":"0.03"},{"v":0,"d":"0.00"},{"v":3.14494333043686,"d":"3.14"},{"v":0.0425840577470177,"d":"0.04"}]
["g859.t1","0050896:1901137:0044711:0009059","0016758:0008194","0031224:0044446:0005794","response to stimulus:carbohydrate derivative biosynthetic process:single-organism biosynthetic process:macromolecule biosynthetic process","transferase activity, transferring hexosyl groups:UDP-glycosyltransferase activity","intrinsic to membrane:intracellular organelle part:Golgi apparatus","ARATHwo_AT3G55830.1","A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant.","sp|Q9LY62|GT644_ARATH","Glycosyltransferase family 64 protein C4","gi|225448359|ref|XP_002267908.1|",null,null,"x","x",{"v":3.9319355519821,"d":"3.93"},{"v":3.37893260109976,"d":"3.38"},{"v":5.40712625659145,"d":"5.41"},{"v":10.007991831794,"d":"10.01"}]
["g860.t1","0044699:0010468:0006396",5488,null,"single-organism process:regulation of gene expression:RNA processing","binding",null,"ARATHwo_AT4G31580.1","Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.","sp|Q6K4N0|RSZ21_ORYSJ","Serine/arginine-rich splicing factor RSZ21","gi|443286703|gb|AGC79943.1|",{"$nulls":4},{"v":4.96725719904815,"d":"4.97"},{"v":12.2792153317979,"d":"12.28"},{"v":10.5640037041795,"d":"10.56"},{"v":14.0859919782629,"d":"14.09"}]
["g861.t1","0044260:0051716:0051726:0048522:0044238",null,null,"cellular macromolecule metabolic process:cellular response to stimulus:regulation of cell cycle:positive regulation of cellular process:primary metabolic process",null,null,"ARATHwo_AT3G15150.1","Encodes a SUMO E3 ligase that regulates endocycle onset and meristem maintenance.","sp|Q8GYH7|NSE2_ARATH","E3 SUMO-protein ligase MMS21","gi|747071656|ref|XP_011082710.1|",null,"x","x","x",{"v":10.0851748669574,"d":"10.09"},{"v":8.64650591392541,"d":"8.65"},{"v":8.94455260867504,"d":"8.94"},{"v":7.36197584948398,"d":"7.36"}]
["g862.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.113325917792987,"d":"0.11"},{"v":0.593807313405962,"d":"0.59"},{"v":0.890825994685883,"d":"0.89"}]
["g863.t1",{"$nulls":6},"ARATHwo_AT3G55070.1","LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 891 Blast hits to 870 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 367; Fungi - 300; Plants - 157; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).","sp|Q7SXR3|MAEA_DANRE","Macrophage erythroblast attacher","gi|302769506|ref|XP_002968172.1|",{"$nulls":4},{"v":11.0596769171997,"d":"11.06"},{"v":5.44463713416668,"d":"5.44"},{"v":9.06568010390192,"d":"9.07"},{"v":8.06706125860146,"d":"8.07"}]
["g864.t1","0009987:0044699:0008152",null,null,"cellular process:single-organism process:metabolic process",null,null,"ARATHwo_AT5G63910.1","Encodes a farnesylcysteine lyase (EC 1.8.3.5) involved in a salvage /detoxification pathway of farnesylcysteine (FC) residues that are liberated during the degradation of prenylated proteins. Because FC is a competitive inhibitor of prenylcysteine methyltransferases involved in the down-regulation of ABA signaling, fcly mutants with elevated FC levels are hypersensitive to ABA. The protein also appears to be glycosylated when translated in vitro in the presence of microsomal membranes and it likely requires FAD for enzymatic activity.","sp|P57681|PCYOX_ARATH","Farnesylcysteine lyase","gi|302788596|ref|XP_002976067.1|",null,null,"x","x",{"v":3.47845752953659,"d":"3.48"},{"v":11.3405908718796,"d":"11.34"},{"v":9.36607727380794,"d":"9.37"},{"v":0.233263375651593,"d":"0.23"}]
["g865.t1","0000226:0070536:0006351:0010033:0071108:0045104:0006511:0030036:0006289:0010810:0007268:0007399","0051117:0031625:0042802","0005654:0005829:0044429","microtubule cytoskeleton organization:protein K63-linked deubiquitination:transcription, DNA-dependent:response to organic substance:protein K48-linked deubiquitination:intermediate filament cytoskeleton organization:ubiquitin-dependent protein catabolic process:actin cytoskeleton organization:nucleotide-excision repair:regulation of cell-substrate adhesion:synaptic transmission:nervous system development","ATPase binding:ubiquitin protein ligase binding:identical protein binding","nucleoplasm:cytosol:mitochondrial part","ARATHwo_AT3G54130.1","Josephin family protein; CONTAINS InterPro DOMAIN/s: Machado-Joseph disease protein MJD (InterPro:IPR006155); BEST Arabidopsis thaliana protein match is: JOSEPHIN-like protein (TAIR:AT2G29640.1); Has 590 Blast hits to 584 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 14; Plants - 76; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).","sp|Q8LQ36|ATX3_ORYSJ","Putative ataxin-3 homolog","gi|720021480|ref|XP_010262740.1|",null,null,"x","x",{"v":3.72956842355098,"d":"3.73"},{"v":3.82541133552302,"d":"3.83"},{"v":15.7737737465052,"d":"15.77"},{"v":19.1438429829756,"d":"19.14"}]
["g866.t1","0055085:0008152","0042626:0005524",16021,"transmembrane transport:metabolic process","ATPase activity, coupled to transmembrane movement of substances:ATP binding","integral to membrane","ARATHwo_AT5G58270.1","Encodes a mitochondrial half-molecule ABC transporter, a member of ATM subfamily. Mutants are dwarfed, chlorotic plants with altered leaf morphology. ATM3 transcription is induced by Cd(II) or Pb(II). Involved in heavy metal resistance. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth. Role in Moco biosynthesis.","sp|Q9LVM1|AB25B_ARATH","ABC transporter B family member 25, mitochondrial","gi|218197488|gb|EEC79915.1|",{"$nulls":4},{"v":4.9787205421335,"d":"4.98"},{"v":3.10131152713632,"d":"3.10"},{"v":3.97740352868944,"d":"3.98"},{"v":17.8082550734487,"d":"17.81"}]
["g867.t1",{"$nulls":19},"X",null,"X"]
["g868.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.185233421614716,"d":"0.19"},{"v":0.561956595267281,"d":"0.56"},{"v":0,"d":"0.00"}]
["g869.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.068720250605199,"d":"0.07"},{"v":0.121025992972036,"d":"0.12"},{"v":0,"d":"0.00"}]
["g870.t1",{"$nulls":6},"ARATHwo_AT2G20980.1","Similar to MCM10, which in other organism was shown to be involved in the initiation of DNA replication.","sp|Q5RHY1|MCM10_DANRE","Protein MCM10 homolog","gi|645260847|ref|XP_008236011.1|",{"$nulls":4},{"v":3.74138321513255,"d":"3.74"},{"v":2.25427999343936,"d":"2.25"},{"v":3.14782978035899,"d":"3.15"},{"v":6.25968453730691,"d":"6.26"}]
["g871.t1",null,4601,null,null,"peroxidase activity",null,"ARATHwo_AT4G11600.1","Encodes glutathione peroxidase.","sp|O48646|GPX6_ARATH","Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial","gi|383863633|ref|XP_003707284.1|",null,"x","x","x",{"v":98.0431740364844,"d":"98.04"},{"v":144.413717097744,"d":"144.41"},{"v":41.5050653031926,"d":"41.51"},{"v":56.2292849294906,"d":"56.23"}]
["g872.t1",6486,4576,"0005789:0005886:0016021","protein glycosylation","oligosaccharyl transferase activity","endoplasmic reticulum membrane:plasma membrane:integral to membrane","ARATHwo_AT1G34130.1","Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase.","sp|Q9FX21|STT3B_ARATH","Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B","gi|302794953|ref|XP_002979240.1|",null,null,"x","x",{"v":25.1517107731909,"d":"25.15"},{"v":48.6322705771584,"d":"48.63"},{"v":11.3609135356418,"d":"11.36"},{"v":14.2236993530009,"d":"14.22"}]
["g873.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.034880754852913,"d":"0.03"},{"v":0,"d":"0.00"},"X"]
["g874.t1","0071704:0044710",null,null,"organic substance metabolic process:single-organism metabolic process",null,null,"ARATHwo_AT5G03770.1","Encodes a putative KDO (3-deoxy-D-manno-octulosonate) transferase","sp|Q8VZA5|KDTA_ARATH","Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial","gi|661880958|emb|CDP15343.1|",null,null,"x","x",{"v":2.12446224851751,"d":"2.12"},{"v":2.83736341460384,"d":"2.84"},{"v":2.3328610989076,"d":"2.33"},{"v":3.237889368425,"d":"3.24"}]
["g875.t1"]
["g876.t1","0071704:0044237:0044238",null,null,"organic substance metabolic process:cellular metabolic process:primary metabolic process",{"$nulls":6},"gi|548856754|gb|ERN14582.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.105749121741611,"d":"0.11"},{"v":4.45835386314339,"d":"4.46"},{"v":0,"d":"0.00"}]
["g876.t2","0034645:0006139:0010467",3676,null,"cellular macromolecule biosynthetic process:nucleobase-containing compound metabolic process:gene expression","nucleic acid binding",null,"ARATHwo_AT5G48545.1","Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.",null,null,"gi|922511210|ref|XP_013591501.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.105749121741611,"d":"0.11"},{"v":4.45835386314339,"d":"4.46"},{"v":0,"d":"0.00"}]
["g877.t1","0000413:0006623:0006457","0042277:0003755:0005515","0005829:0005771:0005795:0016020:0005783","protein peptidyl-prolyl isomerization:protein targeting to vacuole:protein folding","peptide binding:peptidyl-prolyl cis-trans isomerase activity:protein binding","cytosol:multivesicular body:Golgi stack:membrane:endoplasmic reticulum","ARATHwo_AT2G29960.1","encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.","sp|Q8LDP4|CP19D_ARATH","Peptidyl-prolyl cis-trans isomerase CYP19-4","gi|743865206|ref|XP_011032116.1|",null,"x","x","x",{"v":148.275523365647,"d":"148.28"},{"v":114.104484374874,"d":"114.10"},{"v":50.2890987963411,"d":"50.29"},{"v":17.6767054707958,"d":"17.68"}]
["g878.t1",null,null,5840,null,null,"ribosome","ARATHwo_AT4G25740.1","RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT5G52650.1); Has 2455 Blast hits to 1939 proteins in 382 species: Archae - 0; Bacteria - 320; Metazoa - 798; Fungi - 208; Plants - 219; Viruses - 1; Other Eukaryotes - 909 (source: NCBI BLink).","sp|Q9AYP4|RS10_ORYSJ","40S ribosomal protein S10","gi|168023717|ref|XP_001764384.1|",null,"x","x","x",{"v":2212.17412697922,"d":"2212.17"},{"v":304.712928881834,"d":"304.71"},{"v":133.689398576248,"d":"133.69"},{"v":689.996824851809,"d":"690.00"}]
["g879.t1","0034645:0006139:0010467",3676,null,"cellular macromolecule biosynthetic process:nucleobase-containing compound metabolic process:gene expression","nucleic acid binding",null,"ARATHwo_AT1G65440.1","Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.","sp|Q7KZ85|SPT6H_HUMAN","Transcription elongation factor SPT6","gi|168007757|ref|XP_001756574.1|",null,null,"x","x",{"v":6.4712057651869,"d":"6.47"},{"v":14.5688530087718,"d":"14.57"},{"v":11.9741824069091,"d":"11.97"},{"v":28.9037600824234,"d":"28.90"}]
["g879.t2","0034645:0006139:0010467",3676,null,"cellular macromolecule biosynthetic process:nucleobase-containing compound metabolic process:gene expression","nucleic acid binding",null,"ARATHwo_AT1G65440.1","Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.","sp|Q7KZ85|SPT6H_HUMAN","Transcription elongation factor SPT6","gi|168007757|ref|XP_001756574.1|",null,null,"x","x",{"v":6.4712057651869,"d":"6.47"},{"v":14.5688530087718,"d":"14.57"},{"v":11.9741824069091,"d":"11.97"},{"v":28.9037600824234,"d":"28.90"}]
["g880.t1",{"$nulls":19},"X",null,"X"]
["g881.t1",{"$nulls":10},"gi|658032340|ref|XP_008351676.1|",{"$nulls":9},"X"]
["g882.t1",null,16787,null,null,"hydrolase activity",null,"ARATHwo_AT1G47128.1","cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21). Has been shown to have peptide ligase activity and protease activity in vitro. RD21 is involved in immunity to the necrotrophic fungal pathogen Botrytis cinerea.","sp|P25776|ORYA_ORYSJ","Oryzain alpha chain","gi|116786779|gb|ABK24233.1|",null,null,"x","x",{"v":40.0066946045957,"d":"40.01"},{"v":42.6906130826245,"d":"42.69"},{"v":67.7771141373903,"d":"67.78"},{"v":7.87428544223034,"d":"7.87"}]
["g883.t1",{"$nulls":15},{"v":66.036832129736,"d":"66.04"},{"v":58.3100980043094,"d":"58.31"},{"v":105.128017420036,"d":"105.13"},{"v":10.9069323489399,"d":"10.91"}]
["g884.t2",6281,"0016829:0003676:0016799",null,"DNA repair","lyase activity:nucleic acid binding:hydrolase activity, hydrolyzing N-glycosyl compounds",{"$nulls":3},"sp|P95744|FPG_SYNEL","Formamidopyrimidine-DNA glycosylase","gi|672130577|ref|XP_008788822.1|",null,null,"x","x",{"v":9.54580511962346,"d":"9.55"},{"v":17.2021306537935,"d":"17.20"},{"v":41.042653826918,"d":"41.04"},{"v":27.7255841945635,"d":"27.73"}]
["g884.t1",6281,"0005488:0016787",null,"DNA repair","binding:hydrolase activity",null,"ARATHwo_AT1G52500.2","Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.","sp|O80358|FPG_ARATH","Formamidopyrimidine-DNA glycosylase","gi|723686236|ref|XP_010318710.1|",null,null,"x","x",{"v":9.54580511962346,"d":"9.55"},{"v":17.2021306537935,"d":"17.20"},{"v":41.042653826918,"d":"41.04"},{"v":27.7255841945635,"d":"27.73"}]
["g885.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.27888519317815,"d":"0.28"},{"v":0.0403790317256183,"d":"0.04"},"X"]
["g886.t1",{"$nulls":13},"x","x",{"v":4.55373877441615,"d":"4.55"},{"v":10.6144310932133,"d":"10.61"},{"v":7.00463036002955,"d":"7.00"},{"v":5.62203143820599,"d":"5.62"}]
["g887.t1",{"$nulls":13},"x","x",{"v":1.65469187422218,"d":"1.65"},{"v":21.5308752182703,"d":"21.53"},{"v":13.2231679564252,"d":"13.22"},{"v":16.8182437285863,"d":"16.82"}]
["g888.t1",{"$nulls":13},"x","x",{"v":0.759525321920064,"d":"0.76"},{"v":1.84254956808233,"d":"1.84"},{"v":0.987980812642666,"d":"0.99"},{"v":1.05682347936181,"d":"1.06"}]
["g889.t1",{"$nulls":10},"gi|242826075|ref|XP_002488568.1|",{"$nulls":4},{"v":0.193346325970121,"d":"0.19"},{"v":0.849452049756097,"d":"0.85"},{"v":5.13268942162109,"d":"5.13"},{"v":0.434843340911941,"d":"0.43"}]
["g890.t1",{"$nulls":13},"x","x",{"v":7.05621202240717,"d":"7.06"},{"v":9.98530191740396,"d":"9.99"},{"v":8.21314914785762,"d":"8.21"},{"v":2.56657285862792,"d":"2.57"}]
["g54329.t1"]
["g54330.t1"]
["g54331.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|147845089|emb|CAN78459.1|"]
["g54332.t1",{"$nulls":19},"X",null,"X"]
["g80124.t1",6810,null,16020,"transport",null,"membrane","ARATHwo_AT1G51740.1","member of SYP8 Gene Family","sp|P59277|SYP81_ARATH","Syntaxin-81","gi|326521494|dbj|BAK00323.1|",null,null,"x","x",{"v":43.4794267420494,"d":"43.48"},{"v":6.78431562404643,"d":"6.78"},{"v":5.01152749129705,"d":"5.01"},{"v":5.88343392326162,"d":"5.88"}]
["g54333.t1",{"$nulls":13},"x","x",{"v":14.2762045633299,"d":"14.28"},{"v":12.6273994508904,"d":"12.63"},{"v":16.8398363706418,"d":"16.84"},{"v":39.1543553725256,"d":"39.15"}]
["g54334.t1","0044710:0022402:0032259:0006464:0016568:0006260","0000166:0008168:0004672:0046872",null,"single-organism metabolic process:cell cycle process:methylation:cellular protein modification process:chromatin modification:DNA replication","nucleotide binding:methyltransferase activity:protein kinase activity:metal ion binding",null,"ARATHwo_AT5G24330.1","Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.","sp|Q9FNE9|ATXR6_ARATH","Histone-lysine N-methyltransferase ATXR6","gi|566205343|ref|XP_002321387.2|",{"$nulls":4},{"v":5.83604038242987,"d":"5.84"},{"v":5.33142545519235,"d":"5.33"},{"v":5.8639764426664,"d":"5.86"},{"v":22.6510944700775,"d":"22.65"}]
["g54335.t1",9987,16787,null,"cellular process","hydrolase activity",null,"ARATHwo_AT2G35680.1","Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT5G56610.1); Has 1976 Blast hits to 1976 proteins in 288 species: Archae - 41; Bacteria - 150; Metazoa - 1097; Fungi - 157; Plants - 204; Viruses - 23; Other Eukaryotes - 304 (source: NCBI BLink).","sp|A1L1R5|PTPC1_DANRE","Protein tyrosine phosphatase domain-containing protein 1","gi|907091687|gb|KNC97929.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":3.54322190862558,"d":"3.54"},{"v":0.0318973172449189,"d":"0.03"}]
["g54336.t1",{"$nulls":6},"ARATHwo_AT3G19553.1","Encodes POLYAMINE UPTAKE TRANSPORTER 5, an amino acid permease family protein.","sp|Q28I80|YLAT2_XENTR","Y+L amino acid transporter 2","gi|665790583|ref|XP_008560983.1|",null,null,"x","x",{"v":2.74610639011757,"d":"2.75"},{"v":2.00901219221183,"d":"2.01"},{"v":2.39689021526253,"d":"2.40"},{"v":0.152630824867016,"d":"0.15"}]
["g54337.t1",null,"0005488:0016301",null,null,"binding:kinase activity",null,"ARATHwo_AT4G08170.2","Inositol 1,3,4-trisphosphate 5/6-kinase family protein; FUNCTIONS IN: magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity; INVOLVED IN: response to wounding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Inositol-tetrakisphosphate 1-kinase (InterPro:IPR017427), ATP-grasp fold (InterPro:IPR011761), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: Inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G33770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q10PL5|ITPK2_ORYSJ","Inositol-tetrakisphosphate 1-kinase 2","gi|357145750|ref|XP_003573753.1|",null,null,"x","x",{"v":1.83775592078408,"d":"1.84"},{"v":2.10854604313271,"d":"2.11"},{"v":1.58374159051662,"d":"1.58"},{"v":0.20470110954034,"d":"0.20"}]
["g54338.t1"]
["g54339.t1",19252,9011,"0009501:0009507","starch biosynthetic process","starch synthase activity","amyloplast:chloroplast","ARATHwo_AT1G32900.1","UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, glucan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1); Has 13950 Blast hits to 13932 proteins in 3602 species: Archae - 351; Bacteria - 6813; Metazoa - 7; Fungi - 173; Plants - 5477; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink).","sp|Q00775|SSG1_SOLTU","Granule-bound starch synthase 1, chloroplastic/amyloplastic","gi|641867921|gb|KDO86605.1|",{"$nulls":4},{"v":0.513385445646385,"d":"0.51"},{"v":26.0739078557553,"d":"26.07"},{"v":10.1762781235644,"d":"10.18"},{"v":0.702994773391362,"d":"0.70"}]
["g54340.t1",{"$nulls":6},"ARATHwo_AT1G20575.1","Nucleotide-diphospho-sugar transferases superfamily protein; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G39630.1); Has 22705 Blast hits to 22656 proteins in 2589 species: Archae - 933; Bacteria - 16103; Metazoa - 288; Fungi - 260; Plants - 98; Viruses - 23; Other Eukaryotes - 5000 (source: NCBI BLink).","sp|P11290|YIBD_ECOLI","Uncharacterized glycosyltransferase YibD","gi|923073920|ref|WP_053457334.1|",{"$nulls":4},{"v":0.537271306056355,"d":"0.54"},{"v":2.15950449640538,"d":"2.16"},{"v":1.61924996784544,"d":"1.62"},{"v":0.925994478349531,"d":"0.93"}]
["g80133.t1",{"$nulls":6},"ARATHwo_AT2G17705.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).","sp|Q9STN5|Y4833_ARATH","Uncharacterized protein At4g08330, chloroplastic","gi|566170690|ref|XP_006383038.1|",null,null,"x","x",{"v":3.63281000826211,"d":"3.63"},{"v":0.302986940798243,"d":"0.30"},{"v":0,"d":"0.00"},{"v":1.76147964472363,"d":"1.76"}]
["g54341.t1",{"$nulls":6},"ARATHwo_AT1G71730.1","unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).",null,null,"gi|548844237|gb|ERN03863.1|",null,"x","x","x",{"v":4.91345590182103,"d":"4.91"},{"v":5.5886147579986,"d":"5.59"},{"v":2.85076454410671,"d":"2.85"},{"v":2.44222624873244,"d":"2.44"}]
["g54342.t1",{"$nulls":13},"x","x",{"v":1.91959360132933,"d":"1.92"},{"v":22.3471652086762,"d":"22.35"},{"v":2.19416555160362,"d":"2.19"},{"v":0,"d":"0.00"}]
["g54343.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",{"$nulls":4},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.204218413035681,"d":"0.20"},{"v":1.83426720932626,"d":"1.83"},{"v":0.608594191947856,"d":"0.61"},"X"]
["g54344.t1","0043170:0044238",5488,16020,"macromolecule metabolic process:primary metabolic process","binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|38345562|emb|CAE03436.2|",{"$nulls":4},{"v":0.148837493930828,"d":"0.15"},{"v":0.496719447783325,"d":"0.50"},{"v":0.947092188048033,"d":"0.95"},{"v":6.07136520188602,"d":"6.07"}]
["g80147.t1",{"$nulls":10},"gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.0865200151510982,"d":"0.09"},{"v":0.173698693956761,"d":"0.17"},{"v":1.56964347146529,"d":"1.57"},{"v":0.137278149373905,"d":"0.14"},"X"]
["g54345.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|752340007|gb|KIN99114.1|",{"$nulls":4},{"v":72.1096094988826,"d":"72.11"},{"v":9.93496778482934,"d":"9.93"},{"v":5.07977547299402,"d":"5.08"},{"v":1.94773498803698,"d":"1.95"},null,"X"]
["g54346.t1",{"$nulls":12},"x","x","x",{"v":155.305095048126,"d":"155.31"},{"v":27.7575660596201,"d":"27.76"},{"v":23.0860867004956,"d":"23.09"},{"v":10.3358814518991,"d":"10.34"}]
["g54347.t1"]
["g54348.t1",{"$nulls":6},"ARATHwo_AT3G22220.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 845 Blast hits to 775 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 835; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).",null,null,"gi|675892324|ref|XP_009031664.1|"]
["g54349.t1"]
["g54350.t1",{"$nulls":10},"gi|590567223|ref|XP_007010454.1|",{"$nulls":4},{"v":49.928961541199,"d":"49.93"},{"v":63.842559671042,"d":"63.84"},{"v":20.6548493220835,"d":"20.65"},{"v":5.70090747793879,"d":"5.70"},"X"]
["g54351.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|359372825|gb|AEV42258.1|",{"$nulls":4},{"v":0.0145516786397624,"d":"0.01"},{"v":0.615920405545662,"d":"0.62"},{"v":1.68648741844518,"d":"1.69"},{"v":0.736483905974756,"d":"0.74"},null,"X"]
["g54352.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|57834100|emb|CAE04765.3|",{"$nulls":4},{"v":0.0132863683962551,"d":"0.01"},{"v":0.0179623080403436,"d":"0.02"},{"v":0.552325015226294,"d":"0.55"},{"v":0.0665618701832137,"d":"0.07"},null,"X"]
["g54353.t1",{"$nulls":8},"sp|A4FUB7|GIN1_BOVIN","Gypsy retrotransposon integrase-like protein 1","gi|921121857|ref|XP_013435546.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.162692208493307,"d":"0.16"},{"v":0.321337243066039,"d":"0.32"},{"v":0,"d":"0.00"},"X"]
["g54354.t1",{"$nulls":6},"ARATHwo_AT1G77630.1","Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant.","sp|P25059|POL_BLVAU","Pol polyprotein","gi|661185511|emb|CDH52155.1|",{"$nulls":9},"X"]
["g54355.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.609802140285393,"d":"0.61"},{"v":1.91462749617459,"d":"1.91"},{"v":1.19044061620162,"d":"1.19"},"X",null,"X"]
["g54356.t1","0009639:0009791:0009733:0010015:0048869:0016043:0009926:0048569:0055085:0016049:0008152","0000166:0042626:0022891",16020,"response to red or far red light:post-embryonic development:response to auxin stimulus:root morphogenesis:cellular developmental process:cellular component organization:auxin polar transport:post-embryonic organ development:transmembrane transport:cell growth:metabolic process","nucleotide binding:ATPase activity, coupled to transmembrane movement of substances:substrate-specific transmembrane transporter activity","membrane","ARATHwo_AT4G01830.1","P-glycoprotein 5 (PGP5); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 3 (TAIR:AT4G01820.1); Has 845817 Blast hits to 392712 proteins in 4168 species: Archae - 14768; Bacteria - 661377; Metazoa - 18002; Fungi - 12658; Plants - 9684; Viruses - 32; Other Eukaryotes - 129296 (source: NCBI BLink).","sp|Q9SYI3|AB5B_ARATH","ABC transporter B family member 5","gi|255563677|ref|XP_002522840.1|",null,null,"x","x"]
["g54357.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|923732912|ref|XP_013668695.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0438055600204535,"d":"0.04"},{"v":0.614316271528267,"d":"0.61"},{"v":0.0985093424993763,"d":"0.10"},"X"]
["g54358.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0206242452903352,"d":"0.02"},{"v":0.177547498206796,"d":"0.18"},{"v":0.122197991881805,"d":"0.12"},"X"]
["g54359.t1",{"$nulls":6},"ARATHwo_AT2G39480.1","P-glycoprotein 6 (PGP6); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: P-glycoprotein 20 (TAIR:AT3G55320.1); Has 727628 Blast hits to 364161 proteins in 4096 species: Archae - 12661; Bacteria - 576901; Metazoa - 18207; Fungi - 12101; Plants - 9039; Viruses - 13; Other Eukaryotes - 98706 (source: NCBI BLink).","sp|P23174|MDR3_CRIGR","Phosphatidylcholine translocator ABCB4","gi|524877559|ref|XP_005095479.1|",null,null,"x","x",{"v":0.257673925669873,"d":"0.26"},{"v":0.448475238469862,"d":"0.45"},{"v":1.44550133383473,"d":"1.45"},{"v":0.568309385082744,"d":"0.57"}]
["g54360.t1",{"$nulls":10},"gi|62701703|gb|AAX92776.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.208697256405619,"d":"0.21"},{"v":0.288767426145633,"d":"0.29"},{"v":0,"d":"0.00"},"X"]
["g54361.t1",null,5488,null,null,"binding",{"$nulls":5},"gi|590617356|ref|XP_007023768.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.414510853197649,"d":"0.41"},{"v":0.0478411509537707,"d":"0.05"},"X"]
["g54362.t1",{"$nulls":15},{"v":0.0694754398298641,"d":"0.07"},{"v":0.0779381040151177,"d":"0.08"},{"v":0.233694336117291,"d":"0.23"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54363.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.299245674248867,"d":"0.30"},{"v":0.773017508637125,"d":"0.77"},{"v":0,"d":"0.00"},"X",null,"X"]
["g80187.t1",{"$nulls":13},"x","x",{"v":0,"d":"0.00"},{"v":0.854356991035509,"d":"0.85"},{"v":2.02023952231092,"d":"2.02"},{"v":3.71253488831939,"d":"3.71"}]
["g54409.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|590714903|ref|XP_007050046.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.11035383203787,"d":"0.11"},{"v":6.12263530071465,"d":"6.12"},{"v":0,"d":"0.00"},null,"X"]
["g54410.t1",{"$nulls":15},{"v":0.0979047307269506,"d":"0.10"},{"v":0.674857839966149,"d":"0.67"},{"v":4.08736775128218,"d":"4.09"},{"v":1.15799546342898,"d":"1.16"},"X",null,"X"]
["g54411.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.03599870008305,"d":"1.04"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54412.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|685331615|ref|XP_009103624.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.107335539910547,"d":"0.11"},{"v":0.447992070554787,"d":"0.45"},{"v":0.096116415720121,"d":"0.10"}]
["g54413.t1",null,5488,null,null,"binding",{"$nulls":5},"gi|727651886|ref|XP_010496662.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0625355661668933,"d":"0.06"},{"v":1.6942151010715,"d":"1.69"},{"v":0.104797719489713,"d":"0.10"},"X"]
["g54414.t1",{"$nulls":15},{"v":0.225808455910819,"d":"0.23"},{"v":0,"d":"0.00"},{"v":1.81938903817213,"d":"1.82"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54415.t1"]
["g54416.t1",{"$nulls":15},{"v":0.181192059628525,"d":"0.18"},{"v":2.50421056284672,"d":"2.50"},{"v":3.64419019681468,"d":"3.64"},{"v":14.0859037197559,"d":"14.09"}]
["g54417.t1",{"$nulls":13},"x","x",{"v":0.290375186205076,"d":"0.29"},{"v":1.18259746209954,"d":"1.18"},{"v":0.528957498551401,"d":"0.53"},{"v":10.1937752869102,"d":"10.19"}]
["g54418.t1",{"$nulls":15},{"v":0.08475483341291,"d":"0.08"},{"v":0.064701433906477,"d":"0.06"},{"v":0.0667576540400965,"d":"0.07"},{"v":0.182026352704898,"d":"0.18"}]
["g54419.t1",{"$nulls":6},"ARATHwo_AT3G12560.1","Encodes a telomeric DNA-binding protein.","sp|Q9LL45|TBP1_ORYSJ","Telomere-binding protein 1",{"$nulls":5},{"v":0.208227086836232,"d":"0.21"},{"v":1.08138683490332,"d":"1.08"},{"v":0.729772050830344,"d":"0.73"},{"v":7.32659377407855,"d":"7.33"}]
["g54420.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|Q62559|IFT52_MOUSE","Intraflagellar transport protein 52 homolog","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0.0186251749342562,"d":"0.02"},{"v":0,"d":"0.00"},{"v":10.3187369428783,"d":"10.32"},{"v":2.48191129394937,"d":"2.48"},null,"X"]
["g54421.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.040585496792597,"d":"0.04"},{"v":0.633332600190487,"d":"0.63"},{"v":0.160501488691299,"d":"0.16"}]
["g54422.t1",{"$nulls":10},"gi|909581904|ref|XP_013146956.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.420615494629204,"d":"0.42"},{"v":0.13639298598604,"d":"0.14"},"X"]
["g54423.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.038492874333127,"d":"0.04"},{"v":0.791160406262658,"d":"0.79"},{"v":0.11739922616213,"d":"0.12"},"X"]
["g80205.t1"]
["g891.t1",{"$nulls":13},"x","x",{"v":0.542491346189537,"d":"0.54"},{"v":4.1082831555539,"d":"4.11"},{"v":3.2443796135472,"d":"3.24"},{"v":0.786888872564937,"d":"0.79"}]
["g892.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P03365|POL_MMTVB","Pol polyprotein","gi|671688033|emb|CDS12578.1|",{"$nulls":4},{"v":0.0200887500081994,"d":"0.02"},{"v":0.0781141586335757,"d":"0.08"},{"v":0.053345289293489,"d":"0.05"},{"v":0.0501878816654637,"d":"0.05"},null,"X"]
["g893.t1",{"$nulls":15},{"v":0.712114186654839,"d":"0.71"},{"v":4.23758953849444,"d":"4.24"},{"v":1.58900585872974,"d":"1.59"},{"v":0.801203034324136,"d":"0.80"}]
["g894.t1",{"$nulls":15},{"v":0.151630181108073,"d":"0.15"},{"v":0.142763535009892,"d":"0.14"},{"v":0.571254803372094,"d":"0.57"},{"v":0,"d":"0.00"},"X",null,"X"]
["g895.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.264854081546919,"d":"0.26"},{"v":0.429692612969883,"d":"0.43"},{"v":0.0978590761175407,"d":"0.10"}]
["g896.t1",{"$nulls":8},"sp|P27401|POL_SFV3L","Pro-Pol polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0.0361688449426892,"d":"0.04"},{"v":0.145021085431605,"d":"0.15"},{"v":0.560604072321394,"d":"0.56"},{"v":0.227225536348285,"d":"0.23"},"X"]
["g897.t1",{"$nulls":6},"ARATHwo_AT3G24540.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q1PEM5|PERK3_ARATH","Proline-rich receptor-like protein kinase PERK3","gi|147772272|emb|CAN73982.1|",{"$nulls":4},{"v":1.08625912146671,"d":"1.09"},{"v":4.12638253891936,"d":"4.13"},{"v":2.274918654708,"d":"2.27"},{"v":1.30544011087105,"d":"1.31"}]
["g898.t1",{"$nulls":13},"x","x",{"v":3.35707422388211,"d":"3.36"},{"v":24.4811277926676,"d":"24.48"},{"v":11.3892837527901,"d":"11.39"},{"v":5.22566627025982,"d":"5.23"}]
["g899.t1",{"$nulls":6},"ARATHwo_AT2G26270.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|302795534|ref|XP_002979530.1|",{"$nulls":4},{"v":0.219378958030507,"d":"0.22"},{"v":4.13609159683439,"d":"4.14"},{"v":34.3345946928242,"d":"34.33"},{"v":1.94265111245702,"d":"1.94"}]
["g900.t1",{"$nulls":6},"ARATHwo_AT5G09380.1","RNA polymerase III RPC4; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription from RNA polymerase III promoter; LOCATED IN: DNA-directed RNA polymerase III complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III Rpc4 (InterPro:IPR007811); BEST Arabidopsis thaliana protein match is: RNA polymerase III RPC4 (TAIR:AT4G25180.1); Has 234 Blast hits to 234 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 41; Plants - 59; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).","sp|Q5E9Z7|RPC4_BOVIN","DNA-directed RNA polymerase III subunit RPC4","gi|697106339|ref|XP_009607009.1|",{"$nulls":4},{"v":3.49232401702393,"d":"3.49"},{"v":1.90338350261761,"d":"1.90"},{"v":2.1471093717199,"d":"2.15"},{"v":3.68275888865751,"d":"3.68"}]
["g901.t1",{"$nulls":6},"ARATHwo_AT5G53150.1","DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G05230.1); Has 19161 Blast hits to 18960 proteins in 3050 species: Archae - 127; Bacteria - 8115; Metazoa - 3268; Fungi - 1518; Plants - 2179; Viruses - 8; Other Eukaryotes - 3946 (source: NCBI BLink).",null,null,"gi|641856208|gb|KDO74988.1|",{"$nulls":4},{"v":4.54975588875518,"d":"4.55"},{"v":9.33260671711402,"d":"9.33"},{"v":6.81625435216193,"d":"6.82"},{"v":17.1440407322062,"d":"17.14"}]
["g902.t1",{"$nulls":19},"X",null,"X"]
["g903.t1","0035556:0006629",4435,null,"intracellular signal transduction:lipid metabolic process","phosphatidylinositol phospholipase C activity",null,"ARATHwo_AT3G06340.1","DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G18750.1); Has 30113 Blast hits to 20235 proteins in 3128 species: Archae - 135; Bacteria - 16840; Metazoa - 4469; Fungi - 1889; Plants - 1858; Viruses - 32; Other Eukaryotes - 4890 (source: NCBI BLink).","sp|Q9QYI4|DJB12_MOUSE","DnaJ homolog subfamily B member 12","gi|590641002|ref|XP_007030109.1|",{"$nulls":4},{"v":1.60775077078384,"d":"1.61"},{"v":3.3499146306324,"d":"3.35"},{"v":5.58702689702708,"d":"5.59"},{"v":5.41542519840038,"d":"5.42"}]
["g904.t1",{"$nulls":15},{"v":0.0823937326172098,"d":"0.08"},{"v":0.414768712115825,"d":"0.41"},{"v":4.502587542202,"d":"4.50"},{"v":0.666662849882209,"d":"0.67"}]
["g905.t1","0006281:0018298:0007165","0003677:0003913:0005524:0009881","0005739:0009507","DNA repair:protein-chromophore linkage:signal transduction","DNA binding:DNA photolyase activity:ATP binding:photoreceptor activity","mitochondrion:chloroplast","ARATHwo_AT5G24850.1","Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.","sp|Q651U1|CRYD_ORYSJ","Cryptochrome DASH, chloroplastic/mitochondrial","gi|674945337|emb|CDX88137.1|",null,null,"x","x",{"v":13.9847946634552,"d":"13.98"},{"v":55.1649104540782,"d":"55.16"},{"v":56.5203097668556,"d":"56.52"},{"v":17.3358078463067,"d":"17.34"}]
["g906.t1",{"$nulls":6},"ARATHwo_AT3G05680.2","embryo defective 2016 (EMB2016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown.",null,null,"gi|566209125|ref|XP_002322780.2|",{"$nulls":4},{"v":0.59424636666252,"d":"0.59"},{"v":4.55053022387414,"d":"4.55"},{"v":8.58606991953889,"d":"8.59"},{"v":8.14687387852374,"d":"8.15"}]
["g907.t1",{"$nulls":6},"ARATHwo_AT1G76890.2","encodes a plant trihelix DNA-binding protein","sp|Q39117|TGT2_ARATH","Trihelix transcription factor GT-2",null,"x"]
["g908.t1"]
["g909.t1"]
["g910.t1","0044763:0006810",null,16020,"single-organism cellular process:transport",null,"membrane","ARATHwo_AT1G07030.1","Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G30160.1); Has 27351 Blast hits to 14015 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 11451; Fungi - 7735; Plants - 5292; Viruses - 0; Other Eukaryotes - 2867 (source: NCBI BLink).","sp|Q55DY8|MFRN_DICDI","Mitoferrin","gi|302761822|ref|XP_002964333.1|",null,null,"x","x",{"v":2.37702558509023,"d":"2.38"},{"v":0.842001684558924,"d":"0.84"},{"v":1.36790187297159,"d":"1.37"},{"v":1.2648143678201,"d":"1.26"}]
["g911.t1",{"$nulls":8},"sp|Q54JA3|SIBE_DICDI","Integrin beta-like protein E","gi|255088479|ref|XP_002506162.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.00937537477037347,"d":"0.01"},{"v":8.17757832194785,"d":"8.18"},{"v":0.0883677674320994,"d":"0.09"}]
["g912.t1",{"$nulls":8},"sp|Q4G0P3|HYDIN_HUMAN","Hydrocephalus-inducing protein homolog",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.254463608253976,"d":"0.25"},{"v":0.398878110719422,"d":"0.40"},{"v":0.269802442176057,"d":"0.27"},"X"]
["g913.t1",{"$nulls":10},"gi|506247473|ref|WP_015767248.1|",null,null,"x","x",{"v":8.20411977545703,"d":"8.20"},{"v":8.00951716312858,"d":"8.01"},{"v":12.7494922408507,"d":"12.75"},{"v":11.6180199062591,"d":"11.62"}]
["g914.t1",{"$nulls":10},"gi|729349823|ref|XP_010543033.1|",{"$nulls":4},{"v":2.82541826960469,"d":"2.83"},{"v":5.63392322296899,"d":"5.63"},{"v":9.75281893097543,"d":"9.75"},{"v":15.3148377323839,"d":"15.31"},null,"X"]
["g914.t2",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|729349823|ref|XP_010543033.1|",{"$nulls":4},{"v":2.82541826960469,"d":"2.83"},{"v":5.63392322296899,"d":"5.63"},{"v":9.75281893097543,"d":"9.75"},{"v":15.3148377323839,"d":"15.31"}]
["g915.t1",{"$nulls":13},"x","x"]
["g916.t1",{"$nulls":13},"x","x",{"v":5.50386977397153,"d":"5.50"},{"v":9.05443930513941,"d":"9.05"},{"v":9.11337807980644,"d":"9.11"},{"v":5.2758917726425,"d":"5.28"}]
["g917.t1",null,null,"0009526:0009507:0016020",null,null,"plastid envelope:chloroplast:membrane","ARATHwo_AT1G56440.2","Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.","sp|Q9D706|RPAP3_MOUSE","RNA polymerase II-associated protein 3","gi|168065079|ref|XP_001784483.1|",{"$nulls":4},{"v":0.829452570380545,"d":"0.83"},{"v":9.9022907550888,"d":"9.90"},{"v":7.06208052991389,"d":"7.06"},{"v":9.35449965674982,"d":"9.35"}]
["g918.t1"]
["g919.t1",{"$nulls":8},"sp|A4FUB7|GIN1_BOVIN","Gypsy retrotransposon integrase-like protein 1","gi|661175528|emb|CDH61236.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.15205054400246,"d":"0.15"},{"v":0,"d":"0.00"},null,"X"]
["g920.t1"]
["g921.t1",null,3723,null,null,"RNA binding",null,"ARATHwo_AT3G47120.1","RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 201898 Blast hits to 124021 proteins in 4668 species: Archae - 159; Bacteria - 19385; Metazoa - 64482; Fungi - 8819; Plants - 85595; Viruses - 264; Other Eukaryotes - 23194 (source: NCBI BLink).","sp|Q9SD61|C3H42_ARATH","Zinc finger CCCH domain-containing protein 42","gi|731348613|ref|XP_010685577.1|",{"$nulls":4},{"v":2.85273407123823,"d":"2.85"},{"v":1.46278862367672,"d":"1.46"},{"v":2.11919443882732,"d":"2.12"},{"v":1.74606124969019,"d":"1.75"}]
["g922.t1",{"$nulls":6},"ARATHwo_AT3G27325.2","hydrolases, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908).","sp|Q2USI0|BST1_ASPOR","GPI inositol-deacylase","gi|168030462|ref|XP_001767742.1|",{"$nulls":4},{"v":1.05513567162857,"d":"1.06"},{"v":10.7166082867739,"d":"10.72"},{"v":3.94851734292917,"d":"3.95"},{"v":3.81517826331652,"d":"3.82"}]
["g923.t1"]
["g924.t1",8152,null,null,"metabolic process",null,null,"ARATHwo_AT3G06460.1","GNS1/SUR4 membrane protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GNS1/SUR4 membrane protein (InterPro:IPR002076); BEST Arabidopsis thaliana protein match is: GNS1/SUR4 membrane protein family (TAIR:AT3G06470.1); Has 2223 Blast hits to 2217 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 1419; Fungi - 367; Plants - 108; Viruses - 14; Other Eukaryotes - 315 (source: NCBI BLink).","sp|Q5M8U1|ELOV5_XENTR","Elongation of very long chain fatty acids protein 5","gi|50882493|gb|AAT85662.1|",null,null,"x","x",{"v":7.60160484657635,"d":"7.60"},{"v":46.2512779017823,"d":"46.25"},{"v":12.845393646634,"d":"12.85"},{"v":26.1408841967286,"d":"26.14"}]
["g925.t1",{"$nulls":13},"x","x",{"v":13.4723539779752,"d":"13.47"},{"v":107.575491798113,"d":"107.58"},{"v":27.3274908374403,"d":"27.33"},{"v":53.5267523246955,"d":"53.53"}]
["g926.t1",{"$nulls":8},"sp|Q5XDZ5|Y233_STRP6","Uncharacterized protein M6_Spy0233","gi|159488167|ref|XP_001702091.1|",null,"x","x","x",{"v":32.6476081809803,"d":"32.65"},{"v":9.91975805633188,"d":"9.92"},{"v":5.37680402739931,"d":"5.38"},{"v":0.300725535336155,"d":"0.30"}]
["g927.t1",{"$nulls":6},"ARATHwo_AT4G17420.1","Tryptophan RNA-binding attenuator protein-like; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: Tryptophan RNA-binding attenuator protein-like (TAIR:AT5G47420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|159488167|ref|XP_001702091.1|",null,null,"x",null,{"v":5.91865665697663,"d":"5.92"},{"v":8.20049035380586,"d":"8.20"},{"v":4.05532942766208,"d":"4.06"},{"v":3.46554309782015,"d":"3.47"}]
["g928.t1",{"$nulls":6},"ARATHwo_AT4G17420.1","Tryptophan RNA-binding attenuator protein-like; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: Tryptophan RNA-binding attenuator protein-like (TAIR:AT5G47420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q5XDZ5|Y233_STRP6","Uncharacterized protein M6_Spy0233","gi|159488167|ref|XP_001702091.1|",null,null,"x","x",{"v":1.14563778546324,"d":"1.15"},{"v":0.992081586221238,"d":"0.99"},{"v":34.1701764109667,"d":"34.17"},{"v":0,"d":"0.00"}]
["g929.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|657948755|ref|XP_008339280.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.230804570084845,"d":"0.23"},{"v":1.17749539459821,"d":"1.18"},{"v":0.419312689021334,"d":"0.42"},"X"]
["g930.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",{"$nulls":5},"gi|729409545|ref|XP_010555799.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.633596507784026,"d":"0.63"},{"v":4.93729771082824,"d":"4.94"},{"v":0.84009746573233,"d":"0.84"},null,"X"]
["g931.t2",{"$nulls":15},{"v":0.129136500242135,"d":"0.13"},{"v":0.351429842900017,"d":"0.35"},{"v":21.724582671754,"d":"21.72"},{"v":0.103265215670707,"d":"0.10"}]
["g931.t1",{"$nulls":15},{"v":0.129136500242135,"d":"0.13"},{"v":0.351429842900017,"d":"0.35"},{"v":21.724582671754,"d":"21.72"},{"v":0.103265215670707,"d":"0.10"}]
["g932.t1",{"$nulls":15},{"v":0.0913201778371093,"d":"0.09"},{"v":0.12189837516088,"d":"0.12"},{"v":3.62443532181003,"d":"3.62"},{"v":0.112154321316177,"d":"0.11"}]
["g933.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.0859473954905951,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0.0911543079107303,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g934.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0451347211740593,"d":"0.05"},{"v":0.042105890589342,"d":"0.04"},{"v":0.089863192487391,"d":"0.09"}]
["g935.t1",{"$nulls":10},"gi|703113372|ref|XP_010100369.1|",null,null,"x","x",{"v":41.7578061595462,"d":"41.76"},{"v":35.1319807405434,"d":"35.13"},{"v":54.179555630396,"d":"54.18"},{"v":43.0821498078658,"d":"43.08"}]
["g935.t2",{"$nulls":10},"gi|703113372|ref|XP_010100369.1|",{"$nulls":4},{"v":41.7578061595462,"d":"41.76"},{"v":35.1319807405434,"d":"35.13"},{"v":54.179555630396,"d":"54.18"},{"v":43.0821498078658,"d":"43.08"}]
["g935.t3",{"$nulls":6},"ARATHwo_AT3G26400.1","member of eIF4B - eukaryotic initiation factor 4B","sp|Q9AUJ7|IF4B1_WHEAT","Eukaryotic translation initiation factor 4B1","gi|703113372|ref|XP_010100369.1|",{"$nulls":4},{"v":41.7578061595462,"d":"41.76"},{"v":35.1319807405434,"d":"35.13"},{"v":54.179555630396,"d":"54.18"},{"v":43.0821498078658,"d":"43.08"}]
["g936.t1",{"$nulls":13},"x","x",{"v":85.0216299026737,"d":"85.02"},{"v":27.0353530494975,"d":"27.04"},{"v":34.054205133227,"d":"34.05"},{"v":31.477159926834,"d":"31.48"}]
["g937.t1",{"$nulls":8},"sp|Q8YPT9|YC91L_NOSS1","Ycf91-like protein","gi|255080706|ref|XP_002503926.1|",null,"x","x","x",{"v":3.52120662860002,"d":"3.52"},{"v":2.72602593431956,"d":"2.73"},{"v":2.66339755612062,"d":"2.66"},{"v":0.970187310889274,"d":"0.97"}]
["g938.t1"]
["g939.t1",6810,null,null,"transport",null,null,"ARATHwo_AT4G01810.1","Sec23/Sec24 protein transport family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular protein transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT2G21630.1); Has 8290 Blast hits to 5679 proteins in 621 species: Archae - 16; Bacteria - 1021; Metazoa - 2159; Fungi - 1153; Plants - 2353; Viruses - 447; Other Eukaryotes - 1141 (source: NCBI BLink).","sp|A4R1J7|SEC23_MAGO7","Protein transport protein SEC23","gi|743769009|ref|XP_010914784.1|",null,null,"x","x",{"v":11.6475659110743,"d":"11.65"},{"v":7.00432166804447,"d":"7.00"},{"v":3.78474332752437,"d":"3.78"},{"v":10.560599857276,"d":"10.56"}]
["g940.t1",{"$nulls":8},"sp|A8JAF2|CFA43_CHLRE","Cilia- and flagella-associated protein 43",{"$nulls":3},"x","x",{"v":0.0319447919410342,"d":"0.03"},{"v":0,"d":"0.00"},{"v":3.68524868500747,"d":"3.69"},{"v":0,"d":"0.00"}]
["g941.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.035066447385908,"d":"0.04"},{"v":0.25031827093494,"d":"0.25"},{"v":0,"d":"0.00"},"X"]
["g942.t1",{"$nulls":15},{"v":0.0666872490891325,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0.294600117980089,"d":"0.29"},{"v":0.289645704948261,"d":"0.29"},null,"X","X"]
["g943.t1",{"$nulls":6},"ARATHwo_AT5G66410.1","Encodes a protein that functions in microtubule assembly. Plants with reduced levels of both PLP3a (At3g50960) and PLP3b show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.","sp|Q8LCV1|PLP3B_ARATH","Thioredoxin domain-containing protein PLP3B","gi|568824942|ref|XP_006466850.1|",null,null,"x","x",{"v":4.30700457084913,"d":"4.31"},{"v":2.68476324302045,"d":"2.68"},{"v":1.99293488593724,"d":"1.99"},{"v":2.03629873611948,"d":"2.04"}]
["g944.t1",{"$nulls":13},"x","x",{"v":0.163169343790132,"d":"0.16"},{"v":0.076564535896958,"d":"0.08"},{"v":10.5004003019436,"d":"10.50"},{"v":0,"d":"0.00"}]
["g945.t1",{"$nulls":15},{"v":0.152201341942317,"d":"0.15"},{"v":0,"d":"0.00"},{"v":0.345678349424726,"d":"0.35"},{"v":0,"d":"0.00"},"X",null,"X"]
["g946.t1",{"$nulls":8},"sp|A8JAF2|CFA43_CHLRE","Cilia- and flagella-associated protein 43","gi|145527965|ref|XP_001449782.1|",{"$nulls":4},{"v":0.179747280283487,"d":"0.18"},{"v":0.264131565965867,"d":"0.26"},{"v":6.62991297418455,"d":"6.63"},{"v":0.113953251126518,"d":"0.11"}]
["g947.t1",{"$nulls":6},"ARATHwo_AT4G15020.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|Q09019|DMWD_HUMAN","Dystrophia myotonica WD repeat-containing protein","gi|470112143|ref|XP_004292297.1|",{"$nulls":4},{"v":0.0347687923584797,"d":"0.03"},{"v":0,"d":"0.00"},{"v":8.19053029981028,"d":"8.19"},{"v":0.0660684827532997,"d":"0.07"}]
["g948.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.126736092255041,"d":"0.13"},{"v":0.428618150682606,"d":"0.43"},{"v":0.070385488658881,"d":"0.07"},"X"]
["g949.t1",6418,"0000166:0004812",44444,"tRNA aminoacylation for protein translation","nucleotide binding:aminoacyl-tRNA ligase activity","cytoplasmic part","ARATHwo_AT1G09620.1","ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (InterPro:IPR004493); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT4G04350.1); Has 16931 Blast hits to 15894 proteins in 2953 species: Archae - 757; Bacteria - 11010; Metazoa - 639; Fungi - 488; Plants - 264; Viruses - 0; Other Eukaryotes - 3773 (source: NCBI BLink).","sp|F4I116|SYLC_ARATH","Leucine--tRNA ligase, cytoplasmic","gi|590641100|ref|XP_007030137.1|",null,null,"x","x",{"v":25.9826562298344,"d":"25.98"},{"v":10.4692170592699,"d":"10.47"},{"v":3.61708820897253,"d":"3.62"},{"v":12.1494366673948,"d":"12.15"}]
["g950.t1",9250,16757,9536,"glucan biosynthetic process","transferase activity, transferring glycosyl groups","plastid","ARATHwo_AT1G11720.2","Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).","sp|Q43846|SSY3_SOLTU","Soluble starch synthase 3, chloroplastic/amyloplastic","gi|302800371|ref|XP_002981943.1|",null,null,"x","x",{"v":27.4440556311887,"d":"27.44"},{"v":19.8317971944618,"d":"19.83"},{"v":19.5860598947564,"d":"19.59"},{"v":11.4946354294366,"d":"11.49"}]
["g951.t1",{"$nulls":6},"ARATHwo_AT1G63770.5","Peptidase M1 family protein; FUNCTIONS IN: metallopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase (InterPro:IPR001930), Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782), Peptidase M1, alanyl aminopeptidase (InterPro:IPR012779); BEST Arabidopsis thaliana protein match is: aminopeptidase M1 (TAIR:AT4G33090.1).","sp|B7EA73|PSA_ORYSJ","Puromycin-sensitive aminopeptidase","gi|764580755|ref|XP_011463898.1|",{"$nulls":4},{"v":24.2807765460555,"d":"24.28"},{"v":32.0585491715979,"d":"32.06"},{"v":39.5035407101873,"d":"39.50"},{"v":28.1640385302771,"d":"28.16"}]
["g952.t1",{"$nulls":15},{"v":4.5196376638736,"d":"4.52"},{"v":12.4453933357854,"d":"12.45"},{"v":8.42552338348857,"d":"8.43"},{"v":10.882823790043,"d":"10.88"}]
["g953.t1",{"$nulls":6},"ARATHwo_AT1G29120.5","Hydrolase-like protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1).","sp|O14162|YE7A_SCHPO","Putative lipase C4A8.10","gi|388523019|gb|AFK49571.1|",{"$nulls":4},{"v":4.25478512720908,"d":"4.25"},{"v":5.10440754288276,"d":"5.10"},{"v":9.65835143614088,"d":"9.66"},{"v":5.43840652655167,"d":"5.44"}]
["g954.t1",{"$nulls":13},"x","x",{"v":14.2402099645807,"d":"14.24"},{"v":9.17925203678161,"d":"9.18"},{"v":4.70796145224739,"d":"4.71"},{"v":12.5493592283561,"d":"12.55"}]
["g955.t1",null,"0016740:1901363:0097159",null,null,"transferase activity:heterocyclic compound binding:organic cyclic compound binding",null,"ARATHwo_AT4G10110.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G18510.1); Has 3478 Blast hits to 3175 proteins in 382 species: Archae - 0; Bacteria - 389; Metazoa - 1438; Fungi - 566; Plants - 665; Viruses - 0; Other Eukaryotes - 420 (source: NCBI BLink).","sp|Q15427|SF3B4_HUMAN","Splicing factor 3B subunit 4","gi|302808636|ref|XP_002986012.1|",null,null,"x","x",{"v":9.95925503950605,"d":"9.96"},{"v":6.55114543967646,"d":"6.55"},{"v":4.1168384088915,"d":"4.12"},{"v":17.3026040304942,"d":"17.30"}]
["g956.t1",{"$nulls":6},"ARATHwo_AT3G01530.1","Member of the R2R3 factor gene family.","sp|Q9SSA1|MYB57_ARATH","Transcription factor MYB57",{"$nulls":3},"x","x",{"v":0.630784335438721,"d":"0.63"},{"v":84.0633926522731,"d":"84.06"},{"v":121.218870855705,"d":"121.22"},{"v":1.39642776778071,"d":"1.40"}]
["g957.t1",null,5488,null,null,"binding",null,"ARATHwo_AT2G20560.1","DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).","sp|P59910|DJB13_HUMAN","DnaJ homolog subfamily B member 13","gi|302768405|ref|XP_002967622.1|",null,null,"x","x",{"v":0.36438264514236,"d":"0.36"},{"v":7.5168253676537,"d":"7.52"},{"v":77.7824443403723,"d":"77.78"},{"v":2.09218720851906,"d":"2.09"}]
["g54424.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":5},"gi|670382306|ref|XP_008671911.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0601415263104517,"d":"0.06"},{"v":0.426049424562526,"d":"0.43"},{"v":0,"d":"0.00"},null,"X"]
["g54425.t1",{"$nulls":10},"gi|599117036|ref|XP_007386384.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.277794963303137,"d":"0.28"},{"v":0.797807114179389,"d":"0.80"},{"v":0.0990642165143423,"d":"0.10"}]
["g54426.t1",{"$nulls":6},"ARATHwo_AT4G03560.1","Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. Patch clamp analysis of loss of function mutation indicates TPC1 does not affect Ca2+ signaling in response to abiotic and biotic stress.","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923670483|ref|XP_013650503.1|",{"$nulls":9},"X"]
["g54427.t1","0044763:0006811",null,"0016020:0044464","single-organism cellular process:ion transport",null,"membrane:cell part",{"$nulls":4},"gi|116174510|dbj|BAF34918.1|",null,null,"x","x",{"v":2.46332313084643,"d":"2.46"},{"v":0.996108547912747,"d":"1.00"},{"v":5.70748962570455,"d":"5.71"},{"v":3.38915826700253,"d":"3.39"}]
["g80212.t1",55114,"0008270:0016491",null,"oxidation-reduction process","zinc ion binding:oxidoreductase activity",null,"ARATHwo_AT5G61510.1","GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: cell differentiation, response to high light intensity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G21580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|P40783|QOR_SALTY","Quinone oxidoreductase","gi|540131057|gb|ERF80053.1|",{"$nulls":8},"X",null,null,"g80212"]
["g80213.t1",6526,"0030170:0003992",5737,"arginine biosynthetic process","pyridoxal phosphate binding:N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity","cytoplasm","ARATHwo_AT1G80600.1","Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).","sp|Q89LG2|ARGD2_BRADU","Acetylornithine aminotransferase 2","gi|639283350|ref|WP_024584054.1|",{"$nulls":8},"X",null,null,"g80213"]
["g54428.t1",{"$nulls":8},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.197306689992978,"d":"0.20"},{"v":1.46347241275738,"d":"1.46"},{"v":0,"d":"0.00"},"X"]
["g54429.t1",{"$nulls":20},"X","X"]
["g54430.t1"]
["g54431.t1"]
["g54432.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0492703448824067,"d":"0.05"},{"v":0,"d":"0.00"}]
["g54433.t1","0044763:0016043",5488,43231,"single-organism cellular process:cellular component organization","binding","intracellular membrane-bounded organelle","ARATHwo_AT3G12580.1","heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).","sp|P09189|HSP7C_PETHY","Heat shock cognate 70 kDa protein","gi|544215347|ref|XP_005537819.1|"]
["g54434.t1"]
["g54435.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":8},"X"]
["g54436.t1",{"$nulls":20},"X","X"]
["g54437.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.132267121116953,"d":"0.13"},{"v":0.0979344741267227,"d":"0.10"},"X",null,"X"]
["g54438.t1",{"$nulls":6},"ARATHwo_AT3G55440.1","Encodes triosephosphate isomerase.","sp|P36016|LHS1_YEAST","Heat shock protein 70 homolog LHS1","gi|524537129|emb|CDC69918.1|"]
["g54439.t1",{"$nulls":8},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.116211277616481,"d":"0.12"},{"v":0,"d":"0.00"},"X"]
["g54440.t1","0044763:0016043:0009408",5515,43231,"single-organism cellular process:cellular component organization:response to heat","protein binding","intracellular membrane-bounded organelle","ARATHwo_AT3G12580.1","heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).","sp|P09189|HSP7C_PETHY","Heat shock cognate 70 kDa protein","gi|148594078|emb|CAL68989.1|"]
["g54441.t1",6950,null,44464,"response to stress",null,"cell part",null,null,"sp|Q92260|HSP70_PENCI","Heat shock 70 kDa protein","gi|731310842|ref|XP_010678398.1|",{"$nulls":4},{"v":0.373228786431649,"d":"0.37"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g54442.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|401889065|gb|EJT53006.1|",{"$nulls":9},"X"]
["g54443.t1",{"$nulls":8},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|596024107|ref|XP_007219137.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.397953083140083,"d":"0.40"},{"v":2.30021146734703,"d":"2.30"},{"v":0.986151967697894,"d":"0.99"},"X"]
["g54444.t1",null,null,44424,null,null,"intracellular part","ARATHwo_AT1G18610.1","Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G74150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q5EA50|RABEK_BOVIN","Rab9 effector protein with kelch motifs","gi|168031328|ref|XP_001768173.1|",null,null,"x","x",{"v":1.70956399278882,"d":"1.71"},{"v":3.19935755767817,"d":"3.20"},{"v":7.59915467209993,"d":"7.60"},{"v":2.54872582775699,"d":"2.55"}]
["g54445.t1","0044699:0008152",16627,null,"single-organism process:metabolic process","oxidoreductase activity, acting on the CH-CH group of donors",null,"ARATHwo_AT3G06810.1","Encodes a protein with similarity to acyl-CoA dehydrogenases. Mutations in IBR3 render plants resistant to indole-3-butryic acid, a putative storage form of the biologically active auxin IAA (indole-3-acetic acid). IBR3 is hypothesized to carry out the second step in a β-oxidation-like process of IBA metabolism in Arabidopsis. Though its subcellular location has not been determined, IBR3 has a peroxisomal targeting sequence and two other putative IBA metabolic enzymes (IBR1 and IBR10) can be found in this organelle. No specific enzymatic activity has been documented for IBR3, but double mutant analyses with CHY1 argue against a role for IBR3 in general fatty acid β-oxidation.","sp|Q6JQN1|ACD10_HUMAN","Acyl-CoA dehydrogenase family member 10","gi|565351783|ref|XP_006342831.1|"]
["g54446.t1",{"$nulls":10},"gi|168044414|ref|XP_001774676.1|",{"$nulls":4},{"v":2.12495950893302,"d":"2.12"},{"v":0.165535721321476,"d":"0.17"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g54447.t1","0044699:0032501","0097159:1901363:0003824",null,"single-organism process:multicellular organismal process","organic cyclic compound binding:heterocyclic compound binding:catalytic activity",null,"ARATHwo_AT4G15570.1","Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.","sp|B6SFA4|MAA3_ARATH","Probable helicase MAGATAMA 3","gi|548850180|gb|ERN08732.1|",null,null,"x","x",{"v":1.45294685563582,"d":"1.45"},{"v":0.595859553204095,"d":"0.60"},{"v":1.26492081102845,"d":"1.26"},{"v":1.14896562851064,"d":"1.15"}]
["g54448.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0.0960965884239825,"d":"0.10"},{"v":0.526141895316807,"d":"0.53"},{"v":1.80142561986081,"d":"1.80"},{"v":0.410082133046331,"d":"0.41"},"X"]
["g54449.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.548648397165605,"d":"0.55"},{"v":1.5615953799303,"d":"1.56"},{"v":1.1440724976593,"d":"1.14"},"X",null,"X"]
["g54450.t1",{"$nulls":10},"gi|168044414|ref|XP_001774676.1|",null,null,"x","x",{"v":2.42649805748396,"d":"2.43"},{"v":0.17770164300155,"d":"0.18"},{"v":1.16869482417225,"d":"1.17"},{"v":0,"d":"0.00"}]
["g54451.t1",{"$nulls":6},"ARATHwo_AT5G04910.1","unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).","sp|Q9CYZ6|CS060_MOUSE","Uncharacterized protein C19orf60 homolog","gi|449434544|ref|XP_004135056.1|",{"$nulls":4},{"v":1.87066507921467,"d":"1.87"},{"v":2.91700038273092,"d":"2.92"},{"v":2.79206259393608,"d":"2.79"},{"v":9.51004974263059,"d":"9.51"},null,"X"]
["g80239.t1",{"$nulls":6},"ARATHwo_AT1G27600.1","Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.","sp|Q8S626|GT102_ORYSJ","Probable glucuronosyltransferase Os10g0205300","gi|514773297|ref|XP_004967703.1|",{"$nulls":4},{"v":0.432144907095671,"d":"0.43"},{"v":0.381832750813591,"d":"0.38"},{"v":0.561335488888978,"d":"0.56"},{"v":1.43872450985933,"d":"1.44"}]
["g80257.t1",{"$nulls":15},{"v":0.168396666007016,"d":"0.17"},{"v":0.180119820192265,"d":"0.18"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54502.t1","0007267:0035196:0010267:0009616",4672,16020,"cell-cell signaling:production of miRNAs involved in gene silencing by miRNA:production of ta-siRNAs involved in RNA interference:virus induced gene silencing","protein kinase activity","membrane","ARATHwo_AT4G20790.1","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G23950.1); Has 22866 Blast hits to 21354 proteins in 341 species: Archae - 0; Bacteria - 11; Metazoa - 712; Fungi - 3; Plants - 21851; Viruses - 23; Other Eukaryotes - 266 (source: NCBI BLink).",null,null,"gi|764527591|ref|XP_004290005.2|",{"$nulls":4},{"v":0.311540328570001,"d":"0.31"},{"v":10.8649336227013,"d":"10.86"},{"v":1.86241843740292,"d":"1.86"},{"v":0.154457845133592,"d":"0.15"}]
["g54503.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.2994621436916,"d":"0.30"},{"v":0.160869167374246,"d":"0.16"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54504.t1"]
["g54505.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g54506.t1","0044763:0044260:0050896:0044238:0065007",16301,null,"single-organism cellular process:cellular macromolecule metabolic process:response to stimulus:primary metabolic process:biological regulation","kinase activity",null,"ARATHwo_AT5G38560.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q9FFW5|PERK8_ARATH","Proline-rich receptor-like protein kinase PERK8","gi|731316051|ref|XP_010694018.1|",{"$nulls":4},{"v":0.406299883159989,"d":"0.41"},{"v":0.161356279576336,"d":"0.16"},{"v":0.204767119667844,"d":"0.20"},{"v":0,"d":"0.00"}]
["g54507.t1"]
["g54508.t1",{"$nulls":6},"ARATHwo_AT3G13020.1","hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13030.3); Has 668 Blast hits to 634 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 657; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).",null,null,"gi|593693396|ref|XP_007147219.1|"]
["g54509.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G07880.2","member of MAP Kinase","sp|O61125|STK4_DICDI","Serine/threonine-protein kinase 4 homolog A","gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":1.44209062211411,"d":"1.44"},{"v":0.771824041048235,"d":"0.77"},{"v":0.433155038825424,"d":"0.43"},{"v":0.199503111581087,"d":"0.20"}]
["g54510.t1"]
["g54511.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.154455500296584,"d":"0.15"}]
["g54512.t1"]
["g54513.t1",44237,16301,null,"cellular metabolic process","kinase activity",null,"ARATHwo_AT5G55560.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: with no lysine (K) kinase 3 (TAIR:AT3G48260.1); Has 100897 Blast hits to 100061 proteins in 3189 species: Archae - 71; Bacteria - 9572; Metazoa - 37309; Fungi - 9559; Plants - 27616; Viruses - 356; Other Eukaryotes - 16414 (source: NCBI BLink).","sp|Q7TPK6|WNK4_RAT","Serine/threonine-protein kinase WNK4","gi|596291154|ref|XP_007226295.1|",{"$nulls":4},{"v":0.42413471699803,"d":"0.42"},{"v":0.0611336454782137,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.724588888573688,"d":"0.72"}]
["g54514.t1",{"$nulls":19},"X",null,"X"]
["g54515.t1","0044260:0010033:0016310:0007165:0044238","0016772:0005488","0043231:0005737","cellular macromolecule metabolic process:response to organic substance:phosphorylation:signal transduction:primary metabolic process","transferase activity, transferring phosphorus-containing groups:binding","intracellular membrane-bounded organelle:cytoplasm","ARATHwo_AT5G13160.1","Mutant is defective in perception of Pseudomonas syringae avirulence gene avrPphB. Encodes a putative serine-threonine kinase.","sp|Q9FE20|PBS1_ARATH","Serine/threonine-protein kinase PBS1","gi|731316051|ref|XP_010694018.1|",{"$nulls":4},{"v":2.55875200973807,"d":"2.56"},{"v":3.32316488298363,"d":"3.32"},{"v":1.41217508753462,"d":"1.41"},{"v":0.709526190400799,"d":"0.71"}]
["g54516.t1",{"$nulls":15},{"v":2.61178878311521,"d":"2.61"},{"v":4.22146440492505,"d":"4.22"},{"v":2.85779509759231,"d":"2.86"},{"v":2.00088173202503,"d":"2.00"}]
["g54517.t1",9987,5488,null,"cellular process","binding",{"$nulls":5},"gi|848886256|ref|XP_012843371.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0915173191043953,"d":"0.09"},{"v":1.48288806164827,"d":"1.48"},{"v":0,"d":"0.00"},null,"X"]
["g54518.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.117666431567236,"d":"0.12"},{"v":0,"d":"0.00"}]
["g54519.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.171011139497174,"d":"0.17"},{"v":0,"d":"0.00"}]
["g54520.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|698479473|ref|XP_009786821.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.223177044996956,"d":"0.22"},{"v":1.15153190697835,"d":"1.15"},{"v":0.55865142271829,"d":"0.56"},"X"]
["g54521.t1",{"$nulls":8},"sp|Q21313|EPI1_CAEEL","Laminin-like protein epi-1","gi|702385221|ref|XP_010064470.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.747802655883683,"d":"0.75"},{"v":0,"d":"0.00"},null,"X"]
["g54522.t1",{"$nulls":8},"sp|Q02964|POL_CAMVE","Enzymatic polyprotein","gi|923912317|ref|XP_013725862.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.258140400796194,"d":"0.26"},{"v":0.196355537661825,"d":"0.20"},"X"]
["g54523.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.605329086079814,"d":"0.61"},{"v":0,"d":"0.00"}]
["g80275.t1",{"$nulls":10},"gi|568440035|ref|XP_006455814.1|",{"$nulls":8},"X"]
["g80282.t1",{"$nulls":8},"sp|D4ATM6|A7590_ARTBC","Uncharacterized secreted protein ARB_07590","gi|663582142|ref|WP_030428847.1|",{"$nulls":4},{"v":148.934132631966,"d":"148.93"},{"v":0.0969173325177823,"d":"0.10"},{"v":0,"d":"0.00"},{"v":2.24212250086281,"d":"2.24"}]
["g80288.t1",{"$nulls":19},"X",null,"X"]
["g54569.t1",{"$nulls":20},"X","X"]
["g54570.t1",6278,"0003964:0003723",null,"RNA-dependent DNA replication","RNA-directed DNA polymerase activity:RNA binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|571443008|ref|XP_006575970.1|",{"$nulls":4},{"v":0.0927402269252966,"d":"0.09"},{"v":0.0864906187071783,"d":"0.09"},{"v":3.09078496075824,"d":"3.09"},{"v":0.41754489576154,"d":"0.42"},"X"]
["g54571.t1",{"$nulls":12},"x","x","x",{"v":21.2012809665591,"d":"21.20"},{"v":20.9105704409223,"d":"20.91"},{"v":27.3328248728715,"d":"27.33"},{"v":10.6268119582595,"d":"10.63"}]
["g54572.t1",{"$nulls":10},"gi|156386113|ref|XP_001633758.1|",{"$nulls":4},{"v":3.6816555755773,"d":"3.68"},{"v":6.21582843009665,"d":"6.22"},{"v":4.07174325782654,"d":"4.07"},{"v":1.29699516872814,"d":"1.30"}]
["g54573.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.124559258417932,"d":"0.12"},{"v":0.287053855454304,"d":"0.29"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54574.t1","0000278:0045893:0051302:0006396:0010090:0009165:0051446:0006270:0042023:0008284:0006275","0003677:0003700","0005667:0005737:0005634","mitotic cell cycle:positive regulation of transcription, DNA-dependent:regulation of cell division:RNA processing:trichome morphogenesis:nucleotide biosynthetic process:positive regulation of meiotic cell cycle:DNA replication initiation:DNA endoreduplication:positive regulation of cell proliferation:regulation of DNA replication","DNA binding:sequence-specific DNA binding transcription factor activity","transcription factor complex:cytoplasm:nucleus","ARATHwo_AT5G22220.2","Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor.","sp|Q9FV71|E2FB_ARATH","Transcription factor E2FB","gi|168030591|ref|XP_001767806.1|",{"$nulls":4},{"v":14.3231369741777,"d":"14.32"},{"v":10.7629876982358,"d":"10.76"},{"v":14.1873719038478,"d":"14.19"},{"v":6.19636048313538,"d":"6.20"}]
["g80310.t1",{"$nulls":8},"sp|Q8DQN5|ZMPB_STRR6","Zinc metalloprotease ZmpB",{"$nulls":9},"X"]
["g54622.t1",{"$nulls":15},{"v":0.0245476243909537,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.0581123510309708,"d":"0.06"},{"v":0,"d":"0.00"}]
["g54623.t1",{"$nulls":15},{"v":14.0579484722538,"d":"14.06"},{"v":3.36796140688496,"d":"3.37"},{"v":7.09938080547009,"d":"7.10"},{"v":0.947141343946613,"d":"0.95"}]
["g54624.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0518905270747723,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g80322.t1",{"$nulls":19},"X",null,"X"]
["g958.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.143555780245514,"d":"0.14"},{"v":4.25969906970511,"d":"4.26"},"X",null,"X"]
["g959.t1",9987,16740,null,"cellular process","transferase activity",null,"ARATHwo_AT3G20200.1","Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G16760.1); Has 113274 Blast hits to 111719 proteins in 4667 species: Archae - 115; Bacteria - 13449; Metazoa - 41561; Fungi - 9228; Plants - 32231; Viruses - 306; Other Eukaryotes - 16384 (source: NCBI BLink).","sp|Q8GUH1|PUB33_ARATH","U-box domain-containing protein 33","gi|835909500|ref|XP_004955133.2|",{"$nulls":4},{"v":0.7615362363887,"d":"0.76"},{"v":6.14480696241302,"d":"6.14"},{"v":7.92332416328425,"d":"7.92"},{"v":4.01319553036236,"d":"4.01"}]
["g960.t1","0006635:0006891:0006869:0006513:0010351:0016558:0009640:0006888:0044265","0005515:0004842:0046872","0005777:0005829:0009506:0005783","fatty acid beta-oxidation:intra-Golgi vesicle-mediated transport:lipid transport:protein monoubiquitination:lithium ion transport:protein import into peroxisome matrix:photomorphogenesis:ER to Golgi vesicle-mediated transport:cellular macromolecule catabolic process","protein binding:ubiquitin-protein ligase activity:metal ion binding","peroxisome:cytosol:plasmodesma:endoplasmic reticulum","ARATHwo_AT1G79810.1","Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.","sp|Q9CA86|PEX2_ARATH","Peroxisome biogenesis protein 2","gi|168059690|ref|XP_001781834.1|",{"$nulls":4},{"v":5.63268219658878,"d":"5.63"},{"v":6.31439259086037,"d":"6.31"},{"v":26.9661881974879,"d":"26.97"},{"v":14.0619162517551,"d":"14.06"},null,"X"]
["g961.t1",{"$nulls":6},"ARATHwo_AT2G36305.1","Encodes an endoprotease involved in the cleavage of prenylated CaaX-box proteins. In vitro, it can cleave a farnesylated tetrapeptide and it can promote membrane-localization of a farnesylated GFP:AtROP9 protein when both are expressed in yeast.","sp|Q9U1H8|FACE2_DROME","CAAX prenyl protease 2","gi|694399199|ref|XP_009374736.1|",null,null,"x","x",{"v":1.10286398908266,"d":"1.10"},{"v":0.848098041149072,"d":"0.85"},{"v":1.25188105658981,"d":"1.25"},{"v":1.21096894990804,"d":"1.21"}]
["g962.t1",{"$nulls":6},"ARATHwo_AT3G24255.1","RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1); Has 2050 Blast hits to 1978 proteins in 93 species: Archae - 11; Bacteria - 19; Metazoa - 133; Fungi - 20; Plants - 1757; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|156324991|ref|XP_001618531.1|"]
["g963.t1",44710,null,null,"single-organism metabolic process",null,null,"ARATHwo_AT2G46210.1","Fatty acid/sphingolipid desaturase; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, iron ion binding, heme binding; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT3G61580.1); Has 5941 Blast hits to 5850 proteins in 906 species: Archae - 2; Bacteria - 1188; Metazoa - 1112; Fungi - 1689; Plants - 939; Viruses - 2; Other Eukaryotes - 1009 (source: NCBI BLink).","sp|Q43469|SLD1_HELAN","Delta(8)-fatty-acid desaturase","gi|168051473|ref|XP_001778179.1|",null,null,"x","x",{"v":16.1696343995718,"d":"16.17"},{"v":8.78100320587194,"d":"8.78"},{"v":7.47145998598985,"d":"7.47"},{"v":0.573328345422191,"d":"0.57"}]
["g964.t1"]
["g965.t1",{"$nulls":6},"ARATHwo_AT4G13870.2","Encodes a protein with homology to the exonuclease domain of hWRN-p of human protein Werner Syndrome Exonuclease (WEX). Forms a complex with the heterodimeric factor Ku. The interaction with KU stimulates WEX exonuclease activity.","sp|Q84LH3|WEX_ARATH","Werner Syndrome-like exonuclease","gi|302803390|ref|XP_002983448.1|",null,null,"x","x",{"v":7.08109725596586,"d":"7.08"},{"v":2.93204097269174,"d":"2.93"},{"v":3.57387510163484,"d":"3.57"},{"v":3.97494632013063,"d":"3.97"}]
["g966.t1","0006284:0000737:0006289","0003684:0008534",31514,"base-excision repair:DNA catabolic process, endonucleolytic:nucleotide-excision repair","damaged DNA binding:oxidized purine nucleobase lesion DNA N-glycosylase activity","motile cilium",null,null,"sp|Q6NYH1|IF122_DANRE","Intraflagellar transport protein 122 homolog","gi|302833822|ref|XP_002948474.1|"]
["g967.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|270016625|gb|EFA13071.1|",{"$nulls":4},{"v":0.143382548567917,"d":"0.14"},{"v":0.353116296551955,"d":"0.35"},{"v":1.93245559520589,"d":"1.93"},{"v":1.17909924291991,"d":"1.18"},"X"]
["g968.t1","0030326:0035050:0042073:0009953:0033365:0021915:0045879",null,"0072372:0031514","embryonic limb morphogenesis:embryonic heart tube development:intraflagellar transport:dorsal/ventral pattern formation:protein localization to organelle:neural tube development:negative regulation of smoothened signaling pathway",null,"primary cilium:motile cilium",{"$nulls":4},"gi|303272293|ref|XP_003055508.1|",{"$nulls":4},{"v":0.557467103822945,"d":"0.56"},{"v":1.07937051022732,"d":"1.08"},{"v":8.99684969748168,"d":"9.00"},{"v":1.73473089640444,"d":"1.73"},null,"X"]
["g969.t1",{"$nulls":15},{"v":1.71552856843506,"d":"1.72"},{"v":0.986266671382429,"d":"0.99"},{"v":1.28007544523436,"d":"1.28"},{"v":0.192735943435435,"d":"0.19"}]
["g970.t1",{"$nulls":13},"x","x",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":20.1293382590299,"d":"20.13"},{"v":0,"d":"0.00"}]
["g971.t1","0044260:0048519:0051707:0031323:0010468:0009058:0007165:0044238:0006952","1901363:0016740:0097159",null,"cellular macromolecule metabolic process:negative regulation of biological process:response to other organism:regulation of cellular metabolic process:regulation of gene expression:biosynthetic process:signal transduction:primary metabolic process:defense response","heterocyclic compound binding:transferase activity:organic cyclic compound binding",null,"ARATHwo_AT1G14790.1","Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.","sp|Q9LQV2|RDR1_ARATH","RNA-dependent RNA polymerase 1","gi|593705713|ref|XP_007153213.1|",null,null,"x","x",{"v":2.01429845586095,"d":"2.01"},{"v":5.0000018134811,"d":"5.00"},{"v":11.3287644260431,"d":"11.33"},{"v":2.37490939567523,"d":"2.37"}]
["g972.t1",{"$nulls":6},"ARATHwo_AT3G19508.1","unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|Q1G3M2|LYRM9_ARATH","LYR motif-containing protein At3g19508","gi|460369764|ref|XP_004230727.1|",null,null,"x","x",{"v":6.80308925045607,"d":"6.80"},{"v":1.35416467865617,"d":"1.35"},{"v":0.783552827749281,"d":"0.78"},{"v":2.7733622611991,"d":"2.77"}]
["g973.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.865241522224024,"d":"0.87"},{"v":0,"d":"0.00"}]
["g974.t1",{"$nulls":13},"x","x",{"v":0.105278089251893,"d":"0.11"},{"v":0,"d":"0.00"},{"v":6.41706871669611,"d":"6.42"},{"v":0.771575047726508,"d":"0.77"}]
["g975.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0777440423706637,"d":"0.08"},{"v":0,"d":"0.00"},"X"]
["g976.t1",{"$nulls":6},"ARATHwo_AT3G16640.1","Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.","sp|P50906|TCTP_PEA","Translationally-controlled tumor protein homolog","gi|116782446|gb|ABK22509.1|",null,"x","x","x",{"v":971.599139311915,"d":"971.60"},{"v":1712.75111523692,"d":"1712.75"},{"v":608.69781724024,"d":"608.70"},{"v":1070.48240120308,"d":"1070.48"}]
["g977.t1",{"$nulls":8},"sp|P19560|POL_BIV29","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.215306713066462,"d":"0.22"},{"v":0,"d":"0.00"},"X"]
["g977.t2",{"$nulls":8},"sp|Q4U0X6|POL_HTL3P","Gag-Pro-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.215306713066462,"d":"0.22"},{"v":0,"d":"0.00"}]
["g978.t1",{"$nulls":6},"ARATHwo_AT1G64600.1","methyltransferases;copper ion binding; FUNCTIONS IN: methyltransferase activity, copper ion binding; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein Rsm22, bacterial-type (InterPro:IPR015324), Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 735 Blast hits to 687 proteins in 272 species: Archae - 0; Bacteria - 212; Metazoa - 195; Fungi - 160; Plants - 44; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).","sp|Q3U2U7|MET17_MOUSE","Methyltransferase-like protein 17, mitochondrial","gi|902182692|gb|KNA09974.1|",{"$nulls":4},{"v":3.4007517033433,"d":"3.40"},{"v":1.36472125888335,"d":"1.36"},{"v":1.3306984005984,"d":"1.33"},{"v":1.79049520374391,"d":"1.79"}]
["g979.t1",{"$nulls":15},{"v":2.29306454669257,"d":"2.29"},{"v":2.95314453166989,"d":"2.95"},{"v":1.23386912356477,"d":"1.23"},{"v":2.09482505515262,"d":"2.09"}]
["g980.t1",{"$nulls":15},{"v":0.0801440252239742,"d":"0.08"},{"v":0.160359161991045,"d":"0.16"},{"v":0.315934503470505,"d":"0.32"},{"v":0.0908332299475247,"d":"0.09"},null,"X","X"]
["g981.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923670453|ref|XP_013650493.1|",{"$nulls":4},{"v":0.033355504834938,"d":"0.03"},{"v":0.0446428646822547,"d":"0.04"},{"v":0.359481194707452,"d":"0.36"},{"v":0.151350897764175,"d":"0.15"},"X"]
["g982.t1","0043412:0008033",null,null,"macromolecule modification:tRNA processing",null,null,"ARATHwo_AT4G35910.1","Adenine nucleotide alpha hydrolases-like superfamily protein; CONTAINS InterPro DOMAIN/s: Thiouridylase, cytoplasmic, subunit 2 (InterPro:IPR019407); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|A2ZM73|CTU2_ORYSI","Cytoplasmic tRNA 2-thiolation protein 2","gi|595818353|ref|XP_007204337.1|",null,null,"x","x",{"v":3.51996653300173,"d":"3.52"},{"v":2.07545337278087,"d":"2.08"},{"v":1.39912447714308,"d":"1.40"},{"v":0.864218203973675,"d":"0.86"}]
["g983.t1",{"$nulls":6},"ARATHwo_AT5G58100.1","unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",null,null,"gi|470123632|ref|XP_004297826.1|",{"$nulls":4},{"v":4.04601791741404,"d":"4.05"},{"v":14.5867991241583,"d":"14.59"},{"v":22.384073676741,"d":"22.38"},{"v":13.4866999175566,"d":"13.49"}]
["g984.t1","0009553:0009220:0009555:0006364",null,null,"embryo sac development:pyrimidine ribonucleotide biosynthetic process:pollen development:rRNA processing",{"$nulls":6},"gi|168036084|ref|XP_001770538.1|",null,null,"x","x",{"v":132.34529558137,"d":"132.35"},{"v":26.2611252550894,"d":"26.26"},{"v":20.6064110262487,"d":"20.61"},{"v":40.7048909253417,"d":"40.70"}]
["g984.t2","0048856:0009165:0048229",null,null,"anatomical structure development:nucleotide biosynthetic process:gametophyte development",null,null,"ARATHwo_AT1G31660.1","CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).","sp|Q5E9N0|BYST_BOVIN","Bystin","gi|743859267|ref|XP_010942665.1|",null,null,"x","x",{"v":132.34529558137,"d":"132.35"},{"v":26.2611252550894,"d":"26.26"},{"v":20.6064110262487,"d":"20.61"},{"v":40.7048909253417,"d":"40.70"}]
["g985.t1",{"$nulls":6},"ARATHwo_AT1G09280.1","CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink).","sp|Q94AC1|STR6_ARATH","Rhodanese-like domain-containing protein 6","gi|168063971|ref|XP_001783940.1|",null,null,"x","x",{"v":2.61383927238371,"d":"2.61"},{"v":1.5468336948547,"d":"1.55"},{"v":1.2401744496302,"d":"1.24"},{"v":0.987021566668409,"d":"0.99"}]
["g986.t1",{"$nulls":6},"ARATHwo_AT2G33550.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).",null,null,"gi|168056129|ref|XP_001780074.1|"]
["g987.t1",{"$nulls":6},"ARATHwo_AT2G13770.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).",null,null,"gi|557328959|ref|XP_006037398.1|",{"$nulls":4},{"v":0.0356642653844371,"d":"0.04"},{"v":0.0343577178720757,"d":"0.03"},{"v":0.344960698018106,"d":"0.34"},{"v":0,"d":"0.00"},"X"]
["g988.t1",8152,4376,null,"metabolic process","glycolipid mannosyltransferase activity",null,"ARATHwo_AT1G78800.1","UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 5 (TAIR:AT5G37180.1); Has 14746 Blast hits to 14703 proteins in 2118 species: Archae - 647; Bacteria - 10061; Metazoa - 282; Fungi - 266; Plants - 467; Viruses - 0; Other Eukaryotes - 3023 (source: NCBI BLink).","sp|Q9H553|ALG2_HUMAN","Alpha-1,3/1,6-mannosyltransferase ALG2","gi|168052924|ref|XP_001778889.1|",{"$nulls":4},{"v":1.49639769812306,"d":"1.50"},{"v":1.33499038547576,"d":"1.33"},{"v":1.57091000645209,"d":"1.57"},{"v":2.69589508579497,"d":"2.70"}]
["g989.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.294094765971846,"d":"0.29"},{"v":0,"d":"0.00"},"X",null,"X"]
["g990.t1",6810,null,null,"transport",null,null,"ARATHwo_AT5G46860.1","Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164?220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic.","sp|P93654|SYP22_ARATH","Syntaxin-22","gi|922355972|ref|XP_003612840.2|",null,null,"x","x",{"v":17.5664210518629,"d":"17.57"},{"v":8.24229403017254,"d":"8.24"},{"v":11.2675655394487,"d":"11.27"},{"v":12.5320583706975,"d":"12.53"}]
["g991.t1"]
["g992.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.914652088794747,"d":"0.91"},{"v":0,"d":"0.00"}]
["g993.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8BR93|HARB1_MOUSE","Putative nuclease HARBI1","gi|768941267|ref|XP_011610502.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.152497279230645,"d":"0.15"},{"v":0.133125026416286,"d":"0.13"},{"v":0.0822059218113963,"d":"0.08"},null,"X"]
["g994.t1",9225,"0008460:0050662",null,"nucleotide-sugar metabolic process","dTDP-glucose 4,6-dehydratase activity:coenzyme binding",null,"ARATHwo_AT1G78570.1","Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli.","sp|Q9SYM5|RHM1_ARATH","Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1","gi|902217774|gb|KNA17871.1|",{"$nulls":4},{"v":6.04042858939359,"d":"6.04"},{"v":10.1350916416597,"d":"10.14"},{"v":24.3054145182169,"d":"24.31"},{"v":0.883565156635769,"d":"0.88"}]
["g995.t1",{"$nulls":6},"ARATHwo_AT1G67120.1","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",{"$nulls":7},{"v":0.248412931343683,"d":"0.25"},{"v":0,"d":"0.00"},{"v":0.107197958758497,"d":"0.11"},{"v":0,"d":"0.00"}]
["g996.t1",9225,"0008460:0050662",null,"nucleotide-sugar metabolic process","dTDP-glucose 4,6-dehydratase activity:coenzyme binding",null,"ARATHwo_AT2G28760.2","UDP-XYL synthase 6 (UXS6); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q8VDR7|TGDS_MOUSE","dTDP-D-glucose 4,6-dehydratase","gi|902217774|gb|KNA17871.1|",{"$nulls":4},{"v":0.839980446042455,"d":"0.84"},{"v":1.59965030234718,"d":"1.60"},{"v":11.2934363890311,"d":"11.29"},{"v":0.203050903747078,"d":"0.20"}]
["g997.t1",{"$nulls":6},"ARATHwo_AT1G43760.1","DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G40390.1); Has 1816 Blast hits to 1744 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 164; Fungi - 4; Plants - 1633; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|141475|sp|P14381.1|YTX2_XENLA",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.924368291215503,"d":"0.92"},{"v":0,"d":"0.00"}]
["g998.t1","0009933:0010468:0009640:0006261:0051301:1990067:2000011:0071897","0003887:0008026:0003677:0005524",5634,"meristem structural organization:regulation of gene expression:photomorphogenesis:DNA-dependent DNA replication:cell division:intrachromosomal DNA recombination:regulation of adaxial/abaxial pattern formation:DNA biosynthetic process","DNA-directed DNA polymerase activity:ATP-dependent helicase activity:DNA binding:ATP binding","nucleus","ARATHwo_AT5G26742.2","embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), GUCT (InterPro:IPR012562), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1); Has 62370 Blast hits to 60300 proteins in 3359 species: Archae - 1368; Bacteria - 33087; Metazoa - 7991; Fungi - 5480; Plants - 3250; Viruses - 141; Other Eukaryotes - 11053 (source: NCBI BLink).","sp|Q58796|Y1401_METJA","Probable ATP-dependent helicase MJ1401","gi|568844550|ref|XP_006476151.1|"]
["g999.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|828310986|ref|XP_012571185.1|",{"$nulls":4},{"v":0.0659171105807272,"d":"0.07"},{"v":0.107103586312621,"d":"0.11"},{"v":0.451239518380999,"d":"0.45"},{"v":0.163866160972931,"d":"0.16"}]
["g1000.t1",6260,"0003676:0016787",null,"DNA replication","nucleic acid binding:hydrolase activity",null,"ARATHwo_AT4G32700.2","Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.","sp|Q588V7|TEB_ARATH","Helicase and polymerase-containing protein TEBICHI","gi|697124418|ref|XP_009616203.1|",{"$nulls":4},{"v":0.160148256380554,"d":"0.16"},{"v":0.503644816320777,"d":"0.50"},{"v":2.58198490485319,"d":"2.58"},{"v":2.47073522335258,"d":"2.47"}]
["g1001.t1",null,null,16020,null,null,"membrane","ARATHwo_AT5G27490.1","Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G05280.1); Has 530 Blast hits to 529 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 113; Plants - 90; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).","sp|Q54TS4|YIPF1_DICDI","Protein YIPF1 homolog","gi|168053125|ref|XP_001778988.1|",{"$nulls":4},{"v":35.6773301635869,"d":"35.68"},{"v":31.3861215456726,"d":"31.39"},{"v":13.9455700332058,"d":"13.95"},{"v":18.2651295981473,"d":"18.27"}]
["g1002.t1",{"$nulls":12},"x","x","x",{"v":158.805853695141,"d":"158.81"},{"v":60.5562769082961,"d":"60.56"},{"v":39.4855201840063,"d":"39.49"},{"v":1.56993798358653,"d":"1.57"},null,"X","X"]
["g1003.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|384490483|gb|EIE81705.1|",{"$nulls":8},"X"]
["g1004.t1",7034,null,null,"vacuolar transport",null,null,"ARATHwo_AT5G22950.1","VPS24.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FFB3|VP241_ARATH","Vacuolar protein sorting-associated protein 24 homolog 1","gi|168028873|ref|XP_001766951.1|",null,null,"x","x",{"v":7.43658669828986,"d":"7.44"},{"v":10.1951310996932,"d":"10.20"},{"v":25.1124895167695,"d":"25.11"},{"v":15.4460928857783,"d":"15.45"}]
["g1005.t1",{"$nulls":10},"gi|34392553|dbj|BAC82605.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.219762227286254,"d":"0.22"},{"v":5.24954683476444,"d":"5.25"},{"v":0,"d":"0.00"}]
["g1006.t1","0006556:0006730","0004478:0046872:0005524",5737,"S-adenosylmethionine biosynthetic process:one-carbon metabolic process","methionine adenosyltransferase activity:metal ion binding:ATP binding","cytoplasm","ARATHwo_AT4G01850.1","S-adenosylmethionine synthetase 2 (SAM-2); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 1 (TAIR:AT1G02500.2); Has 10906 Blast hits to 10898 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4150 (source: NCBI BLink).","sp|Q6SYB9|METK2_TOBAC","S-adenosylmethionine synthase 2","gi|168052622|ref|XP_001778739.1|",{"$nulls":4},{"v":2.96198449028306,"d":"2.96"},{"v":13.9397954763185,"d":"13.94"},{"v":149.845140799715,"d":"149.85"},{"v":21.9665638094413,"d":"21.97"}]
["g1007.t1",{"$nulls":15},{"v":0.0774363148576395,"d":"0.08"},{"v":0,"d":"0.00"},{"v":0.102039264050944,"d":"0.10"},{"v":0,"d":"0.00"}]
["g1008.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|596295113|ref|XP_007226950.1|",{"$nulls":4},{"v":0.12559666432708,"d":"0.13"},{"v":0.796857905341785,"d":"0.80"},{"v":1.82683830073149,"d":"1.83"},{"v":1.20937002060737,"d":"1.21"},null,"X"]
["g1009.t1",{"$nulls":15},{"v":0.105099553766446,"d":"0.11"},{"v":0.357246104714088,"d":"0.36"},{"v":0.272121633586473,"d":"0.27"},{"v":0,"d":"0.00"}]
["g1010.t1",null,"0003677:0003682",5634,null,"DNA binding:chromatin binding","nucleus","ARATHwo_AT3G11450.1","DnaJ domain ;Myb-like DNA-binding domain; FUNCTIONS IN: heat shock protein binding, DNA binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), MYB-like (InterPro:IPR017877), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778); BEST Arabidopsis thaliana protein match is: DnaJ domain ;Myb-like DNA-binding domain (TAIR:AT5G06110.2); Has 60375 Blast hits to 43868 proteins in 3410 species: Archae - 228; Bacteria - 14410; Metazoa - 19184; Fungi - 5541; Plants - 3499; Viruses - 192; Other Eukaryotes - 17321 (source: NCBI BLink).","sp|Q7TQ20|DNJC2_RAT","DnaJ homolog subfamily C member 2","gi|661894840|emb|CDP01839.1|",{"$nulls":4},{"v":9.45479458724268,"d":"9.45"},{"v":12.3439156999781,"d":"12.34"},{"v":13.0256392933915,"d":"13.03"},{"v":18.2937796697083,"d":"18.29"}]
["g1011.t1",{"$nulls":8},"sp|Q6NSI8|K1841_HUMAN","Uncharacterized protein KIAA1841","gi|922855836|gb|KOO24250.1|",{"$nulls":4},{"v":0.591476855532645,"d":"0.59"},{"v":0.431883475068291,"d":"0.43"},{"v":5.76512777925863,"d":"5.77"},{"v":1.20750007802084,"d":"1.21"}]
["g1012.t1",{"$nulls":6},"ARATHwo_AT3G02220.1","unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351); Has 215 Blast hits to 215 proteins in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).","sp|Q9CQ90|CI085_MOUSE","Uncharacterized protein C9orf85 homolog","gi|697182164|ref|XP_009600084.1|",{"$nulls":4},{"v":1.34753681780217,"d":"1.35"},{"v":8.58105510202341,"d":"8.58"},{"v":6.57345210871126,"d":"6.57"},{"v":13.2345660517284,"d":"13.23"}]
["g1013.t1",{"$nulls":6},"ARATHwo_AT5G28910.2","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).",null,null,"gi|502113723|ref|XP_004494738.1|",null,null,"x","x",{"v":5.74809862487944,"d":"5.75"},{"v":4.65488312109339,"d":"4.65"},{"v":2.40668597122128,"d":"2.41"},{"v":1.89295865118422,"d":"1.89"}]
["g1014.t1",{"$nulls":12},"x","x","x",{"v":20.0072334300886,"d":"20.01"},{"v":7.608085184789,"d":"7.61"},{"v":6.53356710273968,"d":"6.53"},{"v":6.42029393589899,"d":"6.42"}]
["g1015.t1",{"$nulls":8},"sp|Q96N23|CFA54_HUMAN","Cilia- and flagella-associated protein 54","gi|303280918|ref|XP_003059751.1|",{"$nulls":4},{"v":0.0127226897941716,"d":"0.01"},{"v":0.117379782100567,"d":"0.12"},{"v":12.4014833714656,"d":"12.40"},{"v":0.245356322485284,"d":"0.25"}]
["g1016.t1",null,3824,null,null,"catalytic activity",null,"ARATHwo_AT2G02380.1","Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002).","sp|O86043|NAGL_RALSP","Maleylpyruvate isomerase","gi|913423995|ref|WP_050406889.1|",null,"x","x","x",{"v":50.3464092183053,"d":"50.35"},{"v":36.4680956314086,"d":"36.47"},{"v":25.0514795675189,"d":"25.05"},{"v":85.7370369051531,"d":"85.74"}]
["g1017.t1",null,null,"0042995:0043226:0044424",null,null,"cell projection:organelle:intracellular part",{"$nulls":4},"gi|761976348|gb|KIZ06196.1|",{"$nulls":9},"X"]
["g1018.t1",{"$nulls":6},"ARATHwo_AT3G27460.1","SGF29 tudor-like domain; CONTAINS InterPro DOMAIN/s: SAGA-associated factor 29 (InterPro:IPR010750); BEST Arabidopsis thaliana protein match is: SGF29 tudor-like domain (TAIR:AT5G40550.2); Has 319 Blast hits to 319 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 112; Plants - 46; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).","sp|Q9DA08|SGF29_MOUSE","SAGA-associated factor 29 homolog","gi|116785570|gb|ABK23776.1|",{"$nulls":4},{"v":0.786301443166862,"d":"0.79"},{"v":0.648013264274633,"d":"0.65"},{"v":2.02063972844624,"d":"2.02"},{"v":0,"d":"0.00"}]
["g1019.t1",{"$nulls":8},"sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0297934708759956,"d":"0.03"},{"v":0.654013229288059,"d":"0.65"},{"v":0,"d":"0.00"}]
["g1020.t1",null,5488,16023,null,"binding","cytoplasmic membrane-bounded vesicle","ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|374081772|dbj|BAL46523.1|"]
["g1021.t1",{"$nulls":6},"ARATHwo_AT1G29150.1","specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A.","sp|Q9LP45|PSD11_ARATH","26S proteasome non-ATPase regulatory subunit 11 homolog","gi|302757517|ref|XP_002962182.1|",null,null,"x","x",{"v":14.80675781888,"d":"14.81"},{"v":12.3323735975062,"d":"12.33"},{"v":13.1923142757487,"d":"13.19"},{"v":9.3042413983283,"d":"9.30"}]
["g1022.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":8.62908241559616,"d":"8.63"},{"v":3.74394624662511,"d":"3.74"},{"v":1.74832164619624,"d":"1.75"},{"v":2.9475337859632,"d":"2.95"},null,"X"]
["g1023.t1","0006108:0006099:0044262",30060,null,"malate metabolic process:tricarboxylic acid cycle:cellular carbohydrate metabolic process","L-malate dehydrogenase activity",null,"ARATHwo_AT3G15020.1","Lactate/malate dehydrogenase family protein; FUNCTIONS IN: malate dehydrogenase activity, copper ion binding; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, apoplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT1G53240.1); Has 17183 Blast hits to 17180 proteins in 5309 species: Archae - 237; Bacteria - 12010; Metazoa - 1188; Fungi - 539; Plants - 657; Viruses - 0; Other Eukaryotes - 2552 (source: NCBI BLink).","sp|Q9LKA3|MDHM2_ARATH","Malate dehydrogenase 2, mitochondrial","gi|697114534|ref|XP_009611177.1|",null,null,"x","x",{"v":40.1751796460182,"d":"40.18"},{"v":46.6810357283637,"d":"46.68"},{"v":9.30469211434567,"d":"9.30"},{"v":17.1733381186662,"d":"17.17"}]
["g1024.t1",{"$nulls":6},"ARATHwo_AT1G74850.1","Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.","sp|Q9S7Q2|PP124_ARATH","Pentatricopeptide repeat-containing protein At1g74850, chloroplastic","gi|168049795|ref|XP_001777347.1|",null,null,"x","x",{"v":10.5506610351426,"d":"10.55"},{"v":4.26604964616,"d":"4.27"},{"v":3.5029128859634,"d":"3.50"},{"v":7.21270440187781,"d":"7.21"}]
["g1025.t1","0006629:0016311:0016036",8195,"0016020:0048046","lipid metabolic process:dephosphorylation:cellular response to phosphate starvation","phosphatidate phosphatase activity","membrane:apoplast","ARATHwo_AT5G42870.1","The PAH2 gene encodes a phosphatidate phosphohydrolase. Mutant analysis revealed that it involvement in galactolipid synthesis pathway, and the membrane lipid remodeling.","sp|Q9FMN2|PAH2_ARATH","Phosphatidate phosphatase PAH2","gi|548835256|gb|ERM97153.1|",{"$nulls":4},{"v":5.71268946943583,"d":"5.71"},{"v":7.25384673626977,"d":"7.25"},{"v":10.2989711733873,"d":"10.30"},{"v":6.41876647466263,"d":"6.42"}]
["g1026.t1"]
["g1027.t1"]
["g1028.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.207281841047356,"d":"0.21"},{"v":0.786729127729372,"d":"0.79"},{"v":0,"d":"0.00"},"X",null,"X"]
["g1029.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P03554|POL_CAMVS","Enzymatic polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.167272832279167,"d":"0.17"},{"v":0,"d":"0.00"},"X"]
["g1030.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.118034140580748,"d":"0.12"},{"v":1.02676902007941,"d":"1.03"},{"v":0.511917655936663,"d":"0.51"},"X",null,"X"]
["g1031.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",null,null,"gi|255549507|ref|XP_002515806.1|","x"]
["g1032.t1"]
["g1033.t1",null,4180,44444,null,"carboxypeptidase activity","cytoplasmic part","ARATHwo_AT3G10410.1","SERINE CARBOXYPEPTIDASE-LIKE 49 (SCPL49); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 48 (TAIR:AT3G45010.1); Has 3569 Blast hits to 3439 proteins in 342 species: Archae - 0; Bacteria - 147; Metazoa - 678; Fungi - 883; Plants - 1454; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).","sp|Q41005|CBPX_PEA","Serine carboxypeptidase-like","gi|596051899|ref|XP_007220656.1|",null,null,"x","x",{"v":6.95806768820783,"d":"6.96"},{"v":6.42660833097634,"d":"6.43"},{"v":11.2786437167836,"d":"11.28"},{"v":0.854851829413421,"d":"0.85"}]
["g1034.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.602797186312908,"d":"0.60"},{"v":0,"d":"0.00"}]
["g1035.t1",{"$nulls":6},"ARATHwo_AT3G10860.1","Cytochrome b-c1 complex, subunit 8 protein; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b-c1 complex, subunit 8 (InterPro:IPR020101); BEST Arabidopsis thaliana protein match is: Cytochrome b-c1 complex, subunit 8 protein (TAIR:AT5G05370.1); Has 67 Blast hits to 67 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|P46269|QCR8_SOLTU","Cytochrome b-c1 complex subunit 8","gi|116781835|gb|ABK22260.1|",null,null,"x","x",{"v":173.690502959771,"d":"173.69"},{"v":92.3215437705795,"d":"92.32"},{"v":77.8150122561607,"d":"77.82"},{"v":57.5703530095647,"d":"57.57"}]
["g1036.t1",{"$nulls":6},"ARATHwo_AT1G01020.1","ARV1; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT4G01510.1); Has 311 Blast hits to 311 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 115; Plants - 42; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).","sp|Q54GD9|ARV1_DICDI","Protein arv1 homolog","gi|294462316|gb|ADE76707.1|",null,"x","x","x",{"v":2.5899963586234,"d":"2.59"},{"v":2.60575496701363,"d":"2.61"},{"v":1.69288086940132,"d":"1.69"},{"v":2.42398864509816,"d":"2.42"}]
["g1037.t1",{"$nulls":13},"x","x",{"v":4.84248901711732,"d":"4.84"},{"v":5.5423039245572,"d":"5.54"},{"v":6.12320416363108,"d":"6.12"},{"v":6.10625005392626,"d":"6.11"}]
["g1038.t1",{"$nulls":15},{"v":1.32120775138206,"d":"1.32"},{"v":2.81948312991815,"d":"2.82"},{"v":9.26717619412403,"d":"9.27"},{"v":7.65573165408741,"d":"7.66"},"X",null,"X"]
["g1039.t1",{"$nulls":8},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|50300512|gb|AAT73655.1|",{"$nulls":4},{"v":2.51729882120857,"d":"2.52"},{"v":2.9033297553709,"d":"2.90"},{"v":1.89898130310319,"d":"1.90"},{"v":0.445662358806621,"d":"0.45"},null,"X"]
["g54625.t1"]
["g54626.t1",{"$nulls":10},"gi|302755883|ref|XP_002961365.1|",null,null,"x","x",{"v":16.7670242488746,"d":"16.77"},{"v":53.0453941479432,"d":"53.05"},{"v":56.8003982797636,"d":"56.80"},{"v":70.2784183057509,"d":"70.28"}]
["g54626.t2",{"$nulls":6},"ARATHwo_AT2G15270.1","unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).","sp|Q28IN9|PKRI1_XENTR","PRKR-interacting protein 1 homolog","gi|302755883|ref|XP_002961365.1|",{"$nulls":4},{"v":16.7670242488746,"d":"16.77"},{"v":53.0453941479432,"d":"53.05"},{"v":56.8003982797636,"d":"56.80"},{"v":70.2784183057509,"d":"70.28"}]
["g54627.t1",48731,null,null,"system development",null,null,"ARATHwo_AT2G22010.2","Encodes a protein predicted to act as a RING E3 ubiquitin ligase. It appears to regulate the stability of the KRP1/ICK1 cyclin dependent kinase inhibitor. Induced by beet severe curly virus (BSCTV) C4 protein.","sp|A3KMV8|RBP10_BOVIN","Ran-binding protein 10","gi|302758790|ref|XP_002962818.1|",{"$nulls":4},{"v":0.289310702350264,"d":"0.29"},{"v":0.89674955777678,"d":"0.90"},{"v":5.0115291848477,"d":"5.01"},{"v":0.785700751494827,"d":"0.79"}]
["g54628.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0823778168460137,"d":"0.08"},{"v":0,"d":"0.00"}]
["g54629.t1",{"$nulls":15},{"v":0.490952487819073,"d":"0.49"},{"v":0.241328606892446,"d":"0.24"},{"v":1.80686330666088,"d":"1.81"},{"v":0.467916840964642,"d":"0.47"},null,"X","X"]
["g54630.t1",48731,null,null,"system development",null,null,"ARATHwo_AT1G51450.1","Nuclear protein required for early embryogenesis. Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex that is also involved in the timing of the floral transition and in leaf morphogenesis. Mutants are decreased in H3K4 histone trimethylation.","sp|Q9C8J7|TRO_ARATH","Protein TRAUCO","gi|302758790|ref|XP_002962818.1|",{"$nulls":4},{"v":1.79041274232657,"d":"1.79"},{"v":3.86807488767784,"d":"3.87"},{"v":12.114878387085,"d":"12.11"},{"v":2.87949843350856,"d":"2.88"}]
["g54631.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.181489067912001,"d":"0.18"},{"v":0,"d":"0.00"},"X",null,"X"]
["g54632.t1"]
["g54633.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.116795512575697,"d":"0.12"},{"v":0,"d":"0.00"},null,"X"]
["g54634.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0.335888461609149,"d":"0.34"},{"v":2.62059207391245,"d":"2.62"},{"v":18.9488371555364,"d":"18.95"},{"v":7.48163478509075,"d":"7.48"},null,"X"]
["g54635.t1",{"$nulls":15},{"v":0.0360707045816375,"d":"0.04"},{"v":1.92565170943535,"d":"1.93"},{"v":13.5688424319306,"d":"13.57"},{"v":12.4734206160691,"d":"12.47"},"X",null,"X"]
["g54636.t1",{"$nulls":6},"ARATHwo_AT3G12590.1","unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).",null,null,"gi|302810080|ref|XP_002986732.1|",null,null,"x","x",{"v":2.7237409412707,"d":"2.72"},{"v":6.99324517770942,"d":"6.99"},{"v":7.2078635296274,"d":"7.21"},{"v":6.35489058642667,"d":"6.35"}]
["g54637.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|734340559|gb|KHN09383.1|",{"$nulls":4},{"v":0.0228199333403014,"d":"0.02"},{"v":0.0528518152602035,"d":"0.05"},{"v":0.176794524417037,"d":"0.18"},{"v":0,"d":"0.00"}]
["g54638.t1",{"$nulls":8},"sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.485293015771284,"d":"0.49"},{"v":0,"d":"0.00"},"X"]
["g54639.t1",{"$nulls":8},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|71148691|gb|AAZ28943.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0437741517740463,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X"]
["g54640.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.090604009825281,"d":"0.09"},{"v":0,"d":"0.00"}]
["g80346.t1",{"$nulls":6},"ARATHwo_AT3G02280.1","Flavodoxin family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: P450 reductase 1 (TAIR:AT4G24520.1); Has 7053 Blast hits to 6598 proteins in 1587 species: Archae - 9; Bacteria - 3832; Metazoa - 1042; Fungi - 865; Plants - 492; Viruses - 0; Other Eukaryotes - 813 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":29.9518010842126,"d":"29.95"},{"v":24.6198106204223,"d":"24.62"},{"v":6.08797946546813,"d":"6.09"},{"v":20.7981078913322,"d":"20.80"}]
["g54641.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.33847776127139,"d":"0.34"},{"v":4.43863997966711,"d":"4.44"},{"v":0.358742659633242,"d":"0.36"},"X",null,"X"]
["g54642.t1"]
["g54643.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.113840559924632,"d":"0.11"}]
["g54644.t1"]
["g54645.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q17QR8|HARB1_BOVIN","Putative nuclease HARBI1","gi|294461638|gb|ADE76379.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.128292311987798,"d":"0.13"},{"v":0.0724944549108887,"d":"0.07"},{"v":0,"d":"0.00"}]
["g54646.t1",{"$nulls":15},{"v":0.532183127842244,"d":"0.53"},{"v":0.474013709605632,"d":"0.47"},{"v":1.07953534573826,"d":"1.08"},{"v":0.345007625313354,"d":"0.35"}]
["g54647.t1",{"$nulls":10},"gi|168002008|ref|XP_001753706.1|",null,null,"x","x",{"v":4.81432553436191,"d":"4.81"},{"v":4.85684089549246,"d":"4.86"},{"v":1.61139254625864,"d":"1.61"},{"v":0.142153365497417,"d":"0.14"}]
["g54648.t1"]
["g54649.t1",{"$nulls":8},"sp|Q9JJY3|NSMA2_MOUSE","Sphingomyelin phosphodiesterase 3"]
["g54650.t1"]
["g54651.t1",{"$nulls":20},"X","X"]
["g54652.t1"]
["g54653.t1",{"$nulls":15},{"v":0.134182249174086,"d":"0.13"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},null,"X","X"]
["g54654.t1",{"$nulls":19},"X",null,"X"]
["g54655.t1",{"$nulls":6},"ARATHwo_AT1G79790.1","Encodes a chloroplast-localized FMN hydrolase that whose phosphatase activity is FMN-specific.","sp|Q6JQN1|ACD10_HUMAN","Acyl-CoA dehydrogenase family member 10","gi|902209999|gb|KNA16317.1|",{"$nulls":4},{"v":28.7849775637366,"d":"28.78"},{"v":17.3917939137932,"d":"17.39"},{"v":13.8551442142552,"d":"13.86"},{"v":18.7366944263976,"d":"18.74"}]
["g54656.t1",8152,"0008026:0003723:0005524",null,"metabolic process","ATP-dependent helicase activity:RNA binding:ATP binding",null,"ARATHwo_AT4G16630.1","DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 91788 Blast hits to 67613 proteins in 3461 species: Archae - 858; Bacteria - 34733; Metazoa - 21444; Fungi - 9002; Plants - 4280; Viruses - 615; Other Eukaryotes - 20856 (source: NCBI BLink).","sp|Q9ZRZ8|RH28_ARATH","DEAD-box ATP-dependent RNA helicase 28","gi|302795308|ref|XP_002979417.1|",{"$nulls":4},{"v":7.23230715518742,"d":"7.23"},{"v":10.6357100577336,"d":"10.64"},{"v":6.18957767166054,"d":"6.19"},{"v":8.29727770473869,"d":"8.30"},null,"X"]
["g54656.t2",8152,"0008026:0003723:0005524",null,"metabolic process","ATP-dependent helicase activity:RNA binding:ATP binding",null,"ARATHwo_AT5G60990.1","DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase 36 (TAIR:AT1G16280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q96GQ7|DDX27_HUMAN","Probable ATP-dependent RNA helicase DDX27","gi|302795308|ref|XP_002979417.1|",{"$nulls":4},{"v":7.23230715518742,"d":"7.23"},{"v":10.6357100577336,"d":"10.64"},{"v":6.18957767166054,"d":"6.19"},{"v":8.29727770473869,"d":"8.30"}]
["g54657.t1",{"$nulls":6},"ARATHwo_AT2G35860.1","FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink).","sp|F1QBY1|NIPLB_DANRE","Nipped-B-like protein B",{"$nulls":5},{"v":0.102309719898016,"d":"0.10"},{"v":1.75129315478042,"d":"1.75"},{"v":96.1745166544009,"d":"96.17"},{"v":0.160841001047174,"d":"0.16"}]
["g54658.t1",{"$nulls":6},"ARATHwo_AT4G31350.1","Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT2G19160.1); Has 585 Blast hits to 585 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 553; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).",null,null,"gi|720012554|ref|XP_010259898.1|",null,null,"x","x",{"v":0.0702792684667523,"d":"0.07"},{"v":0.180483715416562,"d":"0.18"},{"v":34.8495242432853,"d":"34.85"},{"v":0.494452794042449,"d":"0.49"}]
["g54659.t1",{"$nulls":15},{"v":0.0572155254234097,"d":"0.06"},{"v":0.0544415851956253,"d":"0.05"},{"v":0.0729785419524623,"d":"0.07"},{"v":0,"d":"0.00"}]
["g54660.t1",{"$nulls":20},"X","X"]
["g54661.t1"]
["g54662.t1",{"$nulls":15},{"v":0.131527041465166,"d":"0.13"},{"v":0.062271400195377,"d":"0.06"},{"v":0.292859682399712,"d":"0.29"},{"v":0.582845745274046,"d":"0.58"}]
["g54663.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|50878384|gb|AAT85159.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.095183374759804,"d":"0.10"},{"v":1.83151865944582,"d":"1.83"},{"v":0,"d":"0.00"},"X"]
["g54664.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|4539665|gb|AAD22158.1|AF061282_11",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.443489020780102,"d":"0.44"},{"v":0.038057772379135,"d":"0.04"},"X"]
["g54665.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|571512813|ref|XP_006596676.1|"]
["g54666.t1"]
["g80382.t1",{"$nulls":15},{"v":55.1426532643368,"d":"55.14"},{"v":59.0219694207766,"d":"59.02"},{"v":41.2486965026395,"d":"41.25"},{"v":102.822540966266,"d":"102.82"}]
["g54764.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.148627519461933,"d":"0.15"},{"v":0,"d":"0.00"},"X"]
["g54765.t1"]
["g54766.t1",{"$nulls":8},"sp|P11369|LORF2_MOUSE","LINE-1 retrotransposable element ORF2 protein","gi|156324991|ref|XP_001618531.1|",{"$nulls":4},{"v":0.0500673019423678,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.101582452073928,"d":"0.10"}]
["g54767.t1",{"$nulls":8},"sp|P63132|PO113_HUMAN","Endogenous retrovirus group K member 113 Pol protein","gi|727509438|ref|XP_010430902.1|",{"$nulls":8},"X"]
["g54768.t1",null,5488,null,null,"binding",null,"ARATHwo_AT1G65660.1","Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.","sp|Q9SHY8|SLU7A_ARATH","Pre-mRNA-splicing factor SLU7-A","gi|778678192|ref|XP_011650934.1|",null,null,"x","x",{"v":5.58919394535607,"d":"5.59"},{"v":4.71411108182687,"d":"4.71"},{"v":15.2730929887908,"d":"15.27"},{"v":4.69211261874425,"d":"4.69"}]
["g54769.t1",8152,"0003723:0005524:0004386",null,"metabolic process","RNA binding:ATP binding:helicase activity",null,"ARATHwo_AT3G18600.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 44310 Blast hits to 43105 proteins in 3082 species: Archae - 753; Bacteria - 22440; Metazoa - 6214; Fungi - 4682; Plants - 2500; Viruses - 12; Other Eukaryotes - 7709 (source: NCBI BLink).","sp|Q03532|HAS1_YEAST","ATP-dependent RNA helicase HAS1","gi|168021219|ref|XP_001763139.1|",{"$nulls":4},{"v":61.8822644728915,"d":"61.88"},{"v":23.8801728652398,"d":"23.88"},{"v":14.8150343920303,"d":"14.82"},{"v":25.3703504578325,"d":"25.37"}]
["g80400.t1","0044238:0043170",null,null,"primary metabolic process:macromolecule metabolic process",{"$nulls":6},"gi|731377205|ref|XP_010667809.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.161647600487391,"d":"0.16"},{"v":0.309956801608229,"d":"0.31"},{"v":0.357123758164229,"d":"0.36"},"X"]
["g80405.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0475864595414073,"d":"0.05"},{"v":0.210625703443925,"d":"0.21"},{"v":0,"d":"0.00"},"X",null,"X"]
["g1040.t1",{"$nulls":6},"ARATHwo_AT3G53040.1","late embryogenesis abundant protein, putative / LEA protein, putative; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: embryonic cell protein 63 (TAIR:AT2G36640.1); Has 58153 Blast hits to 33178 proteins in 2866 species: Archae - 714; Bacteria - 20429; Metazoa - 14816; Fungi - 4800; Plants - 4772; Viruses - 420; Other Eukaryotes - 12202 (source: NCBI BLink).","sp|P0C5A4|LEA3_ORYSJ","Late embryogenesis abundant protein, group 3",{"$nulls":5},{"v":8.47029311053346,"d":"8.47"},{"v":230.733443274156,"d":"230.73"},{"v":2.13480578265107,"d":"2.13"},{"v":1406.3343280373,"d":"1406.33"}]
["g1041.t1",{"$nulls":6},"ARATHwo_AT3G22220.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 845 Blast hits to 775 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 835; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).",null,null,"gi|731387554|ref|XP_010649296.1|",{"$nulls":8},"X"]
["g1042.t1",{"$nulls":6},"ARATHwo_AT3G53040.1","late embryogenesis abundant protein, putative / LEA protein, putative; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: embryonic cell protein 63 (TAIR:AT2G36640.1); Has 58153 Blast hits to 33178 proteins in 2866 species: Archae - 714; Bacteria - 20429; Metazoa - 14816; Fungi - 4800; Plants - 4772; Viruses - 420; Other Eukaryotes - 12202 (source: NCBI BLink).","sp|P0C5A4|LEA3_ORYSJ","Late embryogenesis abundant protein, group 3",{"$nulls":5},{"v":0.832335900918256,"d":"0.83"},{"v":41.6410140386886,"d":"41.64"},{"v":0.226354187376285,"d":"0.23"},{"v":255.95199818671,"d":"255.95"},null,"X"]
["g1043.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P27502|POL_RTBVP","Polyprotein P3","gi|669319139|gb|KFD59622.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.113406537460526,"d":"0.11"},{"v":0.265667944214016,"d":"0.27"},{"v":0.0872463133839477,"d":"0.09"},"X"]
["g1044.t1",{"$nulls":6},"ARATHwo_AT1G72100.1","late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT1G22600.1); Has 5957 Blast hits to 3336 proteins in 883 species: Archae - 38; Bacteria - 2417; Metazoa - 675; Fungi - 389; Plants - 1426; Viruses - 20; Other Eukaryotes - 992 (source: NCBI BLink).","sp|Q42376|LEA3_MAIZE","Late embryogenesis abundant protein, group 3",{"$nulls":5},{"v":0.91616235120764,"d":"0.92"},{"v":22.5702390165927,"d":"22.57"},{"v":0.269389688178579,"d":"0.27"},{"v":139.248495454748,"d":"139.25"}]
["g1045.t1"]
["g1046.t1",{"$nulls":6},"ARATHwo_AT3G21540.1","transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G16750.1); Has 119158 Blast hits to 33008 proteins in 859 species: Archae - 80; Bacteria - 11912; Metazoa - 49564; Fungi - 26721; Plants - 15098; Viruses - 0; Other Eukaryotes - 15783 (source: NCBI BLink).","sp|Q8TBY9|WDR66_HUMAN","WD repeat-containing protein 66","gi|922855979|gb|KOO24380.1|",null,null,"x","x",{"v":0.254025965961159,"d":"0.25"},{"v":3.14548820114428,"d":"3.15"},{"v":46.8280223789443,"d":"46.83"},{"v":0.974115154801668,"d":"0.97"}]
["g1047.t1",{"$nulls":6},"ARATHwo_AT1G08710.2","F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 110 Blast hits to 110 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 49; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).","sp|Q9CAZ0|SKI24_ARATH","F-box protein SKIP24","gi|167998951|ref|XP_001752181.1|",null,null,"x","x",{"v":10.5841696835079,"d":"10.58"},{"v":31.7174318475379,"d":"31.72"},{"v":48.6222783185524,"d":"48.62"},{"v":70.7573810434173,"d":"70.76"}]
["g1047.t2",{"$nulls":15},{"v":10.5841696835079,"d":"10.58"},{"v":31.7174318475379,"d":"31.72"},{"v":48.6222783185524,"d":"48.62"},{"v":70.7573810434173,"d":"70.76"}]
["g1048.t1","0001101:0009725:0007165:0006950:1901700",null,null,"response to acid:response to hormone stimulus:signal transduction:response to stress:response to oxygen-containing compound",null,null,"ARATHwo_AT5G45410.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits to 124 proteins in 34 species: Archae - 2; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|923708909|ref|XP_013661857.1|",null,null,"x","x",{"v":10.8769924600064,"d":"10.88"},{"v":26.818754983167,"d":"26.82"},{"v":19.8604526593462,"d":"19.86"},{"v":17.2303501632506,"d":"17.23"}]
["g1049.t1",{"$nulls":6},"ARATHwo_AT1G19690.1","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); Has 3422 Blast hits to 3422 proteins in 1044 species: Archae - 54; Bacteria - 2233; Metazoa - 3; Fungi - 5; Plants - 67; Viruses - 4; Other Eukaryotes - 1056 (source: NCBI BLink).",null,null,"gi|298706358|emb|CBJ29367.1|",null,null,"x","x",{"v":5.24977666709279,"d":"5.25"},{"v":3.95994789689586,"d":"3.96"},{"v":3.23613852382172,"d":"3.24"},{"v":0.542784776312076,"d":"0.54"}]
["g1050.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0340616571812543,"d":"0.03"},{"v":0.162203764289928,"d":"0.16"},{"v":0,"d":"0.00"},null,"X"]
["g1051.t1",{"$nulls":10},"gi|670401778|ref|XP_008680749.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.152749293392955,"d":"0.15"},{"v":0,"d":"0.00"}]
["g1052.t1",{"$nulls":6},"ARATHwo_AT1G04980.1","Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.","sp|Q869Z0|Y5025_DICDI","Putative protein disulfide-isomerase DDB_G0275025","gi|545367415|ref|XP_005648534.1|",null,null,"x","x",{"v":11.5410827847477,"d":"11.54"},{"v":27.673446491527,"d":"27.67"},{"v":15.5295021313395,"d":"15.53"},{"v":9.0210599675036,"d":"9.02"}]
["g1053.t1","0055085:0006811:0009860:0046686","0005516:0030551:0005216","0090406:0005886","transmembrane transport:ion transport:pollen tube growth:response to cadmium ion","calmodulin binding:cyclic nucleotide binding:ion channel activity","pollen tube:plasma membrane","ARATHwo_AT5G57940.1","member of Cyclic nucleotide gated channel family","sp|Q8RWS9|CNGC5_ARATH","Probable cyclic nucleotide-gated ion channel 5","gi|672178872|ref|XP_008809584.1|",null,null,"x","x",{"v":0.822224379947866,"d":"0.82"},{"v":1.8158506815361,"d":"1.82"},{"v":0.557573309537795,"d":"0.56"},{"v":0.325144807824935,"d":"0.33"}]
["g1054.t1"]
["g1055.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT5G65470.1","O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT4G24530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8W486|Y1491_ARATH","Uncharacterized protein At1g04910","gi|659079969|ref|XP_008440542.1|",{"$nulls":4},{"v":0.87906793513947,"d":"0.88"},{"v":6.58073902581506,"d":"6.58"},{"v":7.25776107265997,"d":"7.26"},{"v":6.48991849448915,"d":"6.49"}]
["g1056.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.169569679405302,"d":"0.17"},{"v":0.0957583593278807,"d":"0.10"},{"v":0,"d":"0.00"}]
["g1057.t1",{"$nulls":6},"ARATHwo_AT1G51770.1","Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G21310.1); Has 593 Blast hits to 593 proteins in 23 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).","sp|Q54DH8|TAF1_DICDI","Transcription initiation factor TFIID subunit 1","gi|743934978|ref|XP_011011841.1|",null,null,"x","x",{"v":3.26596583603125,"d":"3.27"},{"v":12.8492486337611,"d":"12.85"},{"v":3.98090573977781,"d":"3.98"},{"v":14.7259354690087,"d":"14.73"}]
["g1058.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0613389469591586,"d":"0.06"},{"v":0.103222946983198,"d":"0.10"},{"v":0.35351586387362,"d":"0.35"}]
["g1059.t1",{"$nulls":8},"sp|O88851|RBBP9_MOUSE","Putative hydrolase RBBP9","gi|761967443|gb|KIY98910.1|",null,null,"x","x",{"v":7.270360618888,"d":"7.27"},{"v":25.7628316163946,"d":"25.76"},{"v":6.95260246766817,"d":"6.95"},{"v":16.0668589796338,"d":"16.07"}]
["g1060.t1",{"$nulls":6},"ARATHwo_AT3G44100.1","MD-2-related lipid recognition domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT3G11780.1); Has 286 Blast hits to 286 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 123; Plants - 124; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).","sp|Q54SZ9|Y2107_DICDI","Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107","gi|351727767|ref|NP_001237172.1|",null,null,"x","x",{"v":23.0272128989174,"d":"23.03"},{"v":58.0627802182874,"d":"58.06"},{"v":21.2882529752643,"d":"21.29"},{"v":14.8702333939841,"d":"14.87"}]
["g1061.t1",{"$nulls":6},"ARATHwo_AT2G37540.1","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: pollen tube growth; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G02540.1); Has 68340 Blast hits to 68248 proteins in 3185 species: Archae - 570; Bacteria - 45342; Metazoa - 4477; Fungi - 4309; Plants - 2410; Viruses - 0; Other Eukaryotes - 11232 (source: NCBI BLink).","sp|Q8CEE7|RDH13_MOUSE","Retinol dehydrogenase 13","gi|861622839|gb|KMQ87853.1|"]
["g1062.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":4},{"v":0.00907322949442843,"d":"0.01"},{"v":0.0177544327686194,"d":"0.02"},{"v":0.0586222471240443,"d":"0.06"},{"v":0,"d":"0.00"}]
["g1063.t1"]
["g1064.t1",{"$nulls":8},"sp|B5FF86|GPPA_VIBFM","Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase","gi|651285433|ref|WP_026417385.1|",{"$nulls":4},{"v":0.0539201012725047,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.141233121376852,"d":"0.14"},{"v":0.366003409434147,"d":"0.37"}]
["g1065.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":0.05958957264334,"d":"0.06"},{"v":0.198448276233585,"d":"0.20"},{"v":1.64242305688799,"d":"1.64"},{"v":0.65268742669605,"d":"0.65"},"X"]
["g1066.t1",{"$nulls":6},"ARATHwo_AT5G61330.1","rRNA processing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAUB (InterPro:IPR012617); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q9US05|BFR2_SCHPO","Protein bfr2","gi|326490335|dbj|BAJ84831.1|",{"$nulls":4},{"v":6.26753900340903,"d":"6.27"},{"v":7.44608482198608,"d":"7.45"},{"v":5.18313132457725,"d":"5.18"},{"v":7.12168556566294,"d":"7.12"}]
["g1067.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923851487|ref|XP_013704088.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0420859546097945,"d":"0.04"},{"v":0.458491296140085,"d":"0.46"},{"v":0.090143973181073,"d":"0.09"},"X"]
["g1068.t1",{"$nulls":8},"sp|Q5ZIM6|AATF_CHICK","Protein AATF","gi|568832617|ref|XP_006470525.1|",null,null,"x","x"]
["g1069.t1",{"$nulls":12},"x",null,"x",{"v":63.4062056264407,"d":"63.41"},{"v":39.7029587890461,"d":"39.70"},{"v":21.9180008761201,"d":"21.92"},{"v":0.241635157669152,"d":"0.24"}]
["g1070.t1","0009108:0009695:0009965:0043085:0019344:0009072:0009772:0006364:0019288:0019252:0000023:0006636:0009657:0006766:0030154:0009773:0019748:0045893:0006733:0009106:0035304:0015995:0010207:0015986:0006546","0030234:0046961:0046933","0009544:0045261:0009941","coenzyme biosynthetic process:jasmonic acid biosynthetic process:leaf morphogenesis:positive regulation of catalytic activity:cysteine biosynthetic process:aromatic amino acid family metabolic process:photosynthetic electron transport in photosystem II:rRNA processing:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:starch biosynthetic process:maltose metabolic process:unsaturated fatty acid biosynthetic process:plastid organization:vitamin metabolic process:cell differentiation:photosynthetic electron transport in photosystem I:secondary metabolic process:positive regulation of transcription, DNA-dependent:oxidoreduction coenzyme metabolic process:lipoate metabolic process:regulation of protein dephosphorylation:chlorophyll biosynthetic process:photosystem II assembly:ATP synthesis coupled proton transport:glycine catabolic process","enzyme regulator activity:proton-transporting ATPase activity, rotational mechanism:proton-transporting ATP synthase activity, rotational mechanism","chloroplast ATP synthase complex:proton-transporting ATP synthase complex, catalytic core F(1):chloroplast envelope","ARATHwo_AT4G04640.1","One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.","sp|Q01908|ATPG1_ARATH","ATP synthase gamma chain 1, chloroplastic","gi|116793693|gb|ABK26845.1|",null,"x","x","x",{"v":75.1325261114984,"d":"75.13"},{"v":58.9441235722371,"d":"58.94"},{"v":36.5319165435472,"d":"36.53"},{"v":0.462752601268924,"d":"0.46"}]
["g1071.t1",{"$nulls":6},"ARATHwo_AT1G09195.2","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695).","sp|Q8RF47|AROB_FUSNN","Bifunctional 3-dehydroquinate synthase/phosphatase","gi|922306934|gb|ALA57757.1|",null,null,"x","x",{"v":12.0290108396563,"d":"12.03"},{"v":3.60726990691614,"d":"3.61"},{"v":2.83788604272979,"d":"2.84"},{"v":0.528914878060671,"d":"0.53"}]
["g1072.t1",null,16740,null,null,"transferase activity",{"$nulls":3},"sp|Q9P3W6|YLI2_SCHPO","Uncharacterized protein C458.02c","gi|168048878|ref|XP_001776892.1|",null,null,"x","x",{"v":7.77805025490331,"d":"7.78"},{"v":12.4291088626261,"d":"12.43"},{"v":5.60201469158656,"d":"5.60"},{"v":6.48034519339013,"d":"6.48"}]
["g1073.t1",null,5488,"0043234:0000775",null,"binding","protein complex:chromosome, centromeric region","ARATHwo_AT1G19890.1","histone 3.3, male-gamete-specific expression. Direct target promoter of the male germline-specific transcription factor DUO1.","sp|O15819|H33A_DICDI","Histone H3.3 type a","gi|397573743|gb|EJK48849.1|"]
["g1074.t1","0009910:0006355","0046872:0003677:0003700:0046982:0042803",5634,"negative regulation of flower development:regulation of transcription, DNA-dependent","metal ion binding:DNA binding:sequence-specific DNA binding transcription factor activity:protein heterodimerization activity:protein homodimerization activity","nucleus","ARATHwo_AT1G30970.1","Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.","sp|Q9C5G0|SUF4_ARATH","Protein SUPPRESSOR OF FRI 4","gi|590681087|ref|XP_007041014.1|",null,null,"x","x",{"v":8.47900607594487,"d":"8.48"},{"v":29.3616590018991,"d":"29.36"},{"v":41.349844041501,"d":"41.35"},{"v":29.8955514387277,"d":"29.90"}]
["g1075.t1",{"$nulls":6},"ARATHwo_AT4G23490.1","Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G11350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9NS00|C1GLT_HUMAN","Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1","gi|629107529|gb|KCW72675.1|",null,null,"x","x",{"v":0.982781152814763,"d":"0.98"},{"v":19.5386140420931,"d":"19.54"},{"v":8.98572300251622,"d":"8.99"},{"v":10.6225117223136,"d":"10.62"}]
["g1076.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.111949533272078,"d":"0.11"},{"v":0,"d":"0.00"},null,"X","X"]
["g1077.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|294461638|gb|ADE76379.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.133800190406016,"d":"0.13"},{"v":0,"d":"0.00"},"X"]
["g1078.t1",{"$nulls":6},"ARATHwo_AT2G33550.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).",{"$nulls":3},"x",{"$nulls":3},{"v":0.0199261470690286,"d":"0.02"},{"v":0.0766113344064404,"d":"0.08"},{"v":0.0640572770233663,"d":"0.06"},{"v":0,"d":"0.00"}]
["g1079.t1",{"$nulls":13},"x","x",{"v":97.2588257037395,"d":"97.26"},{"v":44.9896693093291,"d":"44.99"},{"v":38.7186781591675,"d":"38.72"},{"v":14.8365496671502,"d":"14.84"}]
["g1080.t1",44699,46872,9536,"single-organism process","metal ion binding","plastid","ARATHwo_AT5G01600.1","Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.","sp|O65100|FRI3_VIGUN","Ferritin-3, chloroplastic","gi|672181855|ref|XP_008811159.1|",null,null,"x","x",{"v":0.245066576537283,"d":"0.25"},{"v":7.74140797565926,"d":"7.74"},{"v":0.0716777109446733,"d":"0.07"},{"v":13.9578473100935,"d":"13.96"}]
["g1081.t1",{"$nulls":10},"gi|302816724|ref|XP_002990040.1|"]
["g1082.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|768941267|ref|XP_011610502.1|",{"$nulls":9},"X"]
["g1083.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.128024933458984,"d":"0.13"},{"v":0,"d":"0.00"}]
["g1084.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.768313025115762,"d":"0.77"},{"v":0.126557904009889,"d":"0.13"},{"v":0,"d":"0.00"}]
["g1085.t1"]
["g1086.t1",8152,16787,null,"metabolic process","hydrolase activity",null,"ARATHwo_AT5G19730.1","Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q8VYZ3|PME53_ARATH","Probable pectinesterase 53","gi|670433523|ref|XP_008657240.1|",null,null,"x","x",{"v":5.79864199252476,"d":"5.80"},{"v":0.84282491030763,"d":"0.84"},{"v":1.72720366419865,"d":"1.73"},{"v":0.329056977156325,"d":"0.33"}]
["g1087.t1"]
["g1088.t1"]
["g1089.t1",{"$nulls":13},"x","x",{"v":0.538119787014093,"d":"0.54"},{"v":2.92187350629925,"d":"2.92"},{"v":0.637779925165748,"d":"0.64"},{"v":14.3627947743099,"d":"14.36"},null,"X","X"]
["g1090.t1","0044763:0051716:0044237:0050794:0006950",16740,16020,"single-organism cellular process:cellular response to stimulus:cellular metabolic process:regulation of cellular process:response to stress","transferase activity","membrane","ARATHwo_AT5G07280.1","Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther.","sp|Q9LYN8|EMS1_ARATH","Leucine-rich repeat receptor protein kinase EMS1","gi|567160208|ref|XP_006396168.1|",null,null,"x","x",{"v":1.66592049939992,"d":"1.67"},{"v":13.2670249514595,"d":"13.27"},{"v":4.92392493721232,"d":"4.92"},{"v":0.372908129792879,"d":"0.37"}]
["g1091.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|769794566|ref|XP_011628706.1|",null,null,"x","x",{"v":1.95951892923331,"d":"1.96"},{"v":2.7777466735153,"d":"2.78"},{"v":2.11376764516454,"d":"2.11"},{"v":3.96577612407997,"d":"3.97"}]
["g1092.t1",{"$nulls":15},{"v":1.17372149107592,"d":"1.17"},{"v":0.14272360774741,"d":"0.14"},{"v":0.177389488057446,"d":"0.18"},{"v":0.169286374875232,"d":"0.17"}]
["g1093.t1",{"$nulls":19},"X",null,"X"]
["g1094.t1",8152,"0003676:0005524:0004386",null,"metabolic process","nucleic acid binding:ATP binding:helicase activity",null,"ARATHwo_AT1G20920.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1); Has 370658 Blast hits to 166919 proteins in 4473 species: Archae - 2452; Bacteria - 63379; Metazoa - 145404; Fungi - 45975; Plants - 23206; Viruses - 1711; Other Eukaryotes - 88531 (source: NCBI BLink).","sp|Q84UQ1|RH42_ORYSJ","DEAD-box ATP-dependent RNA helicase 42","gi|743799083|ref|XP_010925394.1|",{"$nulls":4},{"v":3.68773653262744,"d":"3.69"},{"v":4.17423038382515,"d":"4.17"},{"v":8.50645666971937,"d":"8.51"},{"v":7.87356024806496,"d":"7.87"}]
["g1095.t1","0006278:0006310","0003964:0003677:0003723",null,"RNA-dependent DNA replication:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding",{"$nulls":3},"sp|P10272|POL_BAEVM","Pol polyprotein","gi|384499427|gb|EIE89918.1|",{"$nulls":4},{"v":0.0615038706402544,"d":"0.06"},{"v":0.081176273919375,"d":"0.08"},{"v":0.84625850307629,"d":"0.85"},{"v":0,"d":"0.00"}]
["g1096.t1",null,null,5794,null,null,"Golgi apparatus","ARATHwo_AT1G51770.1","Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G21310.1); Has 593 Blast hits to 593 proteins in 23 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).",null,null,"gi|743813560|ref|XP_011019540.1|",null,null,"x","x",{"v":4.41916713519082,"d":"4.42"},{"v":20.2134461074165,"d":"20.21"},{"v":7.79467528116398,"d":"7.79"},{"v":20.5006006702499,"d":"20.50"}]
["g1097.t1"]
["g1098.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|670447556|ref|XP_008663971.1|"]
["g1099.t1",null,5488,null,null,"binding",null,"ARATHwo_AT5G12920.2","Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 51 Blast hits to 51 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a","gi|546301773|ref|XP_005711507.1|",{"$nulls":4},{"v":6.14897166494429,"d":"6.15"},{"v":4.78170446975504,"d":"4.78"},{"v":12.5091728434183,"d":"12.51"},{"v":3.18645717571976,"d":"3.19"}]
["g1100.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.178905651813293,"d":"0.18"},{"v":0,"d":"0.00"},null,"X","X"]
["g1101.t1",6278,"0046872:0003964",null,"RNA-dependent DNA replication","metal ion binding:RNA-directed DNA polymerase activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|147795669|emb|CAN69982.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0658090635877223,"d":"0.07"},{"v":9.93049787684893,"d":"9.93"},{"v":0.0322048073092993,"d":"0.03"},null,"X"]
["g1102.t1","0044238:0043170:0009987","0016787:0043167",null,"primary metabolic process:macromolecule metabolic process:cellular process","hydrolase activity:ion binding",{"$nulls":3},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|4539021|emb|CAB39733.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.249451249542316,"d":"0.25"},{"v":1.5717211039625,"d":"1.57"},{"v":0.674351274799599,"d":"0.67"},"X"]
["g1103.t1",{"$nulls":8},"sp|P23074|POL_SFV1","Pro-Pol polyprotein","gi|147819718|emb|CAN73574.1|",{"$nulls":4},{"v":0.0408101184616226,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.63483960477706,"d":"0.63"},{"v":0.23238921439894,"d":"0.23"},"X"]
["g1104.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0435297800827787,"d":"0.04"},{"v":0.398337955136471,"d":"0.40"},{"v":0.197318687602202,"d":"0.20"},"X"]
["g1105.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|374081772|dbj|BAL46523.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.132925155548319,"d":"0.13"},{"v":0.0482073136886897,"d":"0.05"},"X"]
["g1106.t1"]
["g1107.t1",{"$nulls":8},"sp|P03359|POL_WMSV","Pol polyprotein","gi|406696795|gb|EKD00070.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.106029027339617,"d":"0.11"},{"v":1.41865485639688,"d":"1.42"},{"v":0.0985261451793563,"d":"0.10"},"X"]
["g1108.t1",{"$nulls":15},{"v":0.0739883988396894,"d":"0.07"},{"v":0.219492545141953,"d":"0.22"},{"v":1.07249899060697,"d":"1.07"},{"v":0.140537513371744,"d":"0.14"},"X",null,"X"]
["g1109.t1",{"$nulls":10},"gi|682386765|gb|KFY68550.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0920490314322077,"d":"0.09"},{"v":1.59504883873981,"d":"1.60"},{"v":0.733063590222463,"d":"0.73"}]
["g1110.t1","0044699:0009987",16772,null,"single-organism process:cellular process","transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT3G51740.1","encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors.","sp|Q9SCT4|IMK2_ARATH","Probably inactive leucine-rich repeat receptor-like protein kinase IMK2","gi|302784538|ref|XP_002974041.1|",null,null,"x","x",{"v":1.27560610839989,"d":"1.28"},{"v":3.31953207948864,"d":"3.32"},{"v":8.52069383255684,"d":"8.52"},{"v":0.398832814366509,"d":"0.40"}]
["g1111.t1",{"$nulls":15},{"v":3.84526278420189,"d":"3.85"},{"v":5.76282750158232,"d":"5.76"},{"v":18.7180005613669,"d":"18.72"},{"v":0.819850133741144,"d":"0.82"}]
["g1112.t1",{"$nulls":15},{"v":5.79989064525045,"d":"5.80"},{"v":4.02815255780411,"d":"4.03"},{"v":8.04308832644409,"d":"8.04"},{"v":2.24869855622289,"d":"2.25"}]
["g1113.t1",6541,"0016787:0016740",5634,"glutamine metabolic process","hydrolase activity:transferase activity","nucleus","ARATHwo_AT1G66860.1","Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT5G38200.1); Has 3601 Blast hits to 3597 proteins in 1187 species: Archae - 19; Bacteria - 2895; Metazoa - 1; Fungi - 3; Plants - 55; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).","sp|Q9HDV0|YHE5_SCHPO","Putative glutamine amidotransferase PB2B2.05","gi|302784702|ref|XP_002974123.1|",null,null,"x","x",{"v":1.35627982923438,"d":"1.36"},{"v":5.0606020788944,"d":"5.06"},{"v":12.8913966929243,"d":"12.89"},{"v":5.28008802147127,"d":"5.28"}]
["g1114.t1",{"$nulls":15},{"v":0.117360750835835,"d":"0.12"},{"v":0,"d":"0.00"},{"v":0.52039698056771,"d":"0.52"},{"v":0,"d":"0.00"}]
["g1115.t1",{"$nulls":20},"X","X"]
["g1116.t1",null,3824,null,null,"catalytic activity",null,"ARATHwo_AT1G07230.1","non-specific phospholipase C1 (NPC1); FUNCTIONS IN: hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C2 (TAIR:AT2G26870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8L7Y9|NPC1_ARATH","Non-specific phospholipase C1","gi|356504452|ref|XP_003521010.1|",null,null,"x","x",{"v":20.5226585829796,"d":"20.52"},{"v":27.1843213194976,"d":"27.18"},{"v":9.06310100762143,"d":"9.06"},{"v":10.5154071655596,"d":"10.52"}]
["g1117.t2","0006278:0006310","0003964:0003677:0003723",5739,"RNA-dependent DNA replication:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding","mitochondrion",null,null,"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|13992686|gb|AAK51580.1|AC022352_16",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.042068640234886,"d":"0.04"},{"v":0.115444431606425,"d":"0.12"},{"v":0,"d":"0.00"}]
["g1117.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.042068640234886,"d":"0.04"},{"v":0.115444431606425,"d":"0.12"},{"v":0,"d":"0.00"},"X",null,"X"]
["g1118.t1",null,16798,null,null,"hydrolase activity, acting on glycosyl bonds",null,"ARATHwo_AT3G10900.1","Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G10890.1); Has 769 Blast hits to 758 proteins in 191 species: Archae - 23; Bacteria - 211; Metazoa - 0; Fungi - 191; Plants - 306; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).","sp|Q9SG95|MAN4_ARATH","Putative mannan endo-1,4-beta-mannosidase 4","gi|823263536|ref|XP_012464532.1|",{"$nulls":4},{"v":66.720235447126,"d":"66.72"},{"v":40.1297098890551,"d":"40.13"},{"v":10.0559308738929,"d":"10.06"},{"v":55.7425234117013,"d":"55.74"}]
["g54770.t1",null,16787,null,null,"hydrolase activity",null,"ARATHwo_AT3G07400.1","lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); Has 393 Blast hits to 389 proteins in 69 species: Archae - 0; Bacteria - 12; Metazoa - 12; Fungi - 52; Plants - 275; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).",null,null,"gi|356558959|ref|XP_003547769.1|",{"$nulls":4},{"v":1.45137198975642,"d":"1.45"},{"v":1.76982347275932,"d":"1.77"},{"v":7.68027322664487,"d":"7.68"},{"v":0.634237109521493,"d":"0.63"}]
["g54771.t1",{"$nulls":8},"sp|Q69ZB8|ZCHC2_MOUSE","Zinc finger CCHC domain-containing protein 2",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.113559762560258,"d":"0.11"},{"v":0.206715163390915,"d":"0.21"}]
["g54772.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.284905202612874,"d":"0.28"},{"v":0,"d":"0.00"}]
["g54773.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|688559892|ref|XP_009300611.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.196019976820224,"d":"0.20"},null,"X"]
["g54774.t1",{"$nulls":10},"gi|491427645|ref|WP_005285440.1|",{"$nulls":4},{"v":0.218571311393945,"d":"0.22"},{"v":0.345848155702459,"d":"0.35"},{"v":7.67932349051907,"d":"7.68"},{"v":0.888859229656785,"d":"0.89"}]
["g80417.t1"]
["g54775.t1"]
["g54776.t1",{"$nulls":15},{"v":1.78354519241236,"d":"1.78"},{"v":7.80151545175018,"d":"7.80"},{"v":4.35291867425277,"d":"4.35"},{"v":2.87507724407114,"d":"2.88"}]
["g54777.t1",{"$nulls":19},"X",null,"X"]
["g54778.t1",{"$nulls":6},"ARATHwo_AT2G24330.1","Protein of unknown function (DUF2296); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2296 (InterPro:IPR019273); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2296) (TAIR:AT4G31080.1); Has 315 Blast hits to 309 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 81; Plants - 79; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","sp|Q9ZQ34|Y2433_ARATH","Uncharacterized protein At2g24330","gi|702320703|ref|XP_010052656.1|",null,null,"x","x",{"v":14.6550644867802,"d":"14.66"},{"v":13.8849538416236,"d":"13.88"},{"v":6.4009417112582,"d":"6.40"},{"v":14.5475728623338,"d":"14.55"}]
["g54779.t1",{"$nulls":6},"ARATHwo_AT1G09575.1","Protein of unknown function (DUF607); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF607) (TAIR:AT1G57610.2); Has 384 Blast hits to 384 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 56; Plants - 127; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).","sp|F4I111|MCU6_ARATH","Calcium uniporter protein 6, mitochondrial","gi|294461524|gb|ADE76323.1|",{"$nulls":4},{"v":1.41688725460344,"d":"1.42"},{"v":2.85198019859011,"d":"2.85"},{"v":1.80392361082176,"d":"1.80"},{"v":0,"d":"0.00"}]
["g54780.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.146885837441165,"d":"0.15"},{"v":0.453157210259987,"d":"0.45"},{"v":0.113500450012567,"d":"0.11"},"X",null,"X"]
["g80424.t1",{"$nulls":15},{"v":102.690715039046,"d":"102.69"},{"v":2.30746845492394,"d":"2.31"},{"v":2.95506780411679,"d":"2.96"},{"v":2.31564185138315,"d":"2.32"}]
["g80425.t1",{"$nulls":6},"ARATHwo_AT1G06070.1","Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5); Has 39307 Blast hits to 17494 proteins in 873 species: Archae - 8; Bacteria - 1528; Metazoa - 14762; Fungi - 4294; Plants - 2852; Viruses - 384; Other Eukaryotes - 15479 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":2.81250971124344,"d":"2.81"},{"v":1.73052617572964,"d":"1.73"},{"v":1.57362794874002,"d":"1.57"},{"v":3.46325745288984,"d":"3.46"}]
["g54781.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":1.86336651574376,"d":"1.86"},{"v":7.57324128765307,"d":"7.57"},{"v":2.2381218056026,"d":"2.24"},"X"]
["g54782.t1",{"$nulls":19},"X",null,"X"]
["g54783.t1",{"$nulls":10},"gi|353244936|emb|CCA76064.1|",{"$nulls":4},{"v":0.0687567606000034,"d":"0.07"},{"v":0,"d":"0.00"},{"v":2.16283913397208,"d":"2.16"},{"v":0,"d":"0.00"},"X"]
["g54784.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|672206794|ref|XP_008779530.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0859539184017803,"d":"0.09"},{"v":0.217528442455611,"d":"0.22"},{"v":0,"d":"0.00"},"X"]
["g54785.t1","0015672:0030001:0055085","0015297:0015077","0016020:0043231:0012505:0044444","monovalent inorganic cation transport:metal ion transport:transmembrane transport","antiporter activity:monovalent inorganic cation transmembrane transporter activity","membrane:intracellular membrane-bounded organelle:endomembrane system:cytoplasmic part","ARATHwo_AT1G79610.1","Encodes an endosomal Na(+)/H(+) antiporter: AT1G54370 (NHX5), AT1G79610 (NHX6). Double knockout nhx5 nhx6 showed reduced growth, with smaller and fewer cells and increased sensitivity to salinity.","sp|Q8RWU6|NHX6_ARATH","Sodium/hydrogen exchanger 6","gi|303305149|gb|ADM13397.1|",null,null,"x","x",{"v":3.46388240315732,"d":"3.46"},{"v":9.77856019620105,"d":"9.78"},{"v":5.72913433338373,"d":"5.73"},{"v":2.18019851258589,"d":"2.18"}]
["g54786.t1",{"$nulls":15},{"v":3.8698753015955,"d":"3.87"},{"v":6.68009828946299,"d":"6.68"},{"v":4.22902506413226,"d":"4.23"},{"v":0.455221790373272,"d":"0.46"}]
["g54787.t1"]
["g54788.t1"]
["g54789.t1",{"$nulls":20},"X","X"]
["g55015.t1",{"$nulls":15},{"v":0.0246112496490291,"d":"0.02"},{"v":0.376452741996021,"d":"0.38"},{"v":4.0948908220611,"d":"4.09"},{"v":0.0559012404271997,"d":"0.06"}]
["g55016.t1",{"$nulls":6},"ARATHwo_AT3G61690.1","nucleotidyltransferases; FUNCTIONS IN: nucleotidyltransferase activity; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934); BEST Arabidopsis thaliana protein match is: PAP/OAS1 substrate-binding domain superfamily (TAIR:AT3G51620.2); Has 793 Blast hits to 566 proteins in 156 species: Archae - 0; Bacteria - 43; Metazoa - 182; Fungi - 92; Plants - 200; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).","sp|Q9UTN3|CID14_SCHPO","Poly(A) RNA polymerase cid14","gi|729453636|ref|XP_010523798.1|",null,null,"x","x",{"v":3.88306676536652,"d":"3.88"},{"v":4.72602114292795,"d":"4.73"},{"v":7.20245614637031,"d":"7.20"},{"v":6.85608218523523,"d":"6.86"}]
["g55017.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|828334236|ref|XP_012575125.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.161019247432948,"d":"0.16"},{"v":0.679216757264182,"d":"0.68"},{"v":0.160396972565557,"d":"0.16"},"X"]
["g55018.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":5},"gi|15217260|gb|AAK92604.1|AC078944_15",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.379711927898637,"d":"0.38"},{"v":0.228971142762657,"d":"0.23"},"X"]
["g55019.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.289216382223879,"d":"0.29"},{"v":0.867517160152693,"d":"0.87"},{"v":0.560176250368251,"d":"0.56"},"X",null,"X"]
["g55020.t1",{"$nulls":6},"ARATHwo_ATMG00850.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.0129297019360418,"d":"0.01"},{"v":0.0848538636780792,"d":"0.08"},{"v":0.770877840555332,"d":"0.77"},{"v":0.256440180824172,"d":"0.26"},null,"X"]
["g55021.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.828944385673401,"d":"0.83"},{"v":0,"d":"0.00"},"X",null,"X"]
["g55022.t1",{"$nulls":19},"X",null,"X"]
["g55023.t1","0043170:0044238",3824,null,"macromolecule metabolic process:primary metabolic process","catalytic activity",{"$nulls":3},"sp|Q8K259|GIN1_MOUSE","Gypsy retrotransposon integrase-like protein 1","gi|4539021|emb|CAB39733.1|",{"$nulls":4},{"v":0.150467576186166,"d":"0.15"},{"v":0.638476648384539,"d":"0.64"},{"v":1.66102217801153,"d":"1.66"},{"v":0.676185008891173,"d":"0.68"},"X"]
["g55024.t1",{"$nulls":15},{"v":0.0277909311913356,"d":"0.03"},{"v":0.0960245766151429,"d":"0.10"},{"v":1.22252572930677,"d":"1.22"},{"v":0.337698946515313,"d":"0.34"},"X",null,"X"]
["g55025.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|731417473|ref|XP_010660316.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0262114983139997,"d":"0.03"},{"v":1.40388602346048,"d":"1.40"},{"v":0,"d":"0.00"}]
["g55026.t1",{"$nulls":15},{"v":0.0562471740440796,"d":"0.06"},{"v":0.0744307301937637,"d":"0.07"},{"v":0.206494807316535,"d":"0.21"},{"v":0,"d":"0.00"}]
["g80436.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT5G61550.2","U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).","sp|Q9FKG6|PUB52_ARATH","U-box domain-containing protein 52","gi|357514573|ref|XP_003627575.1|",{"$nulls":4},{"v":0.66910292347779,"d":"0.67"},{"v":0.186349436737905,"d":"0.19"},{"v":0.108241159057824,"d":"0.11"},{"v":3.86802085548215,"d":"3.87"},"X"]
["g55027.t1",{"$nulls":15},{"v":0.240235827053624,"d":"0.24"},{"v":0,"d":"0.00"},{"v":0.784884939926961,"d":"0.78"},{"v":0.27156326479157,"d":"0.27"},null,"X","X"]
["g55028.t1"]
["g55029.t1",9987,16740,null,"cellular process","transferase activity",null,"ARATHwo_AT1G11340.1","S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), EGF-like, type 3 (InterPro:IPR000742), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11410.1); Has 123060 Blast hits to 121063 proteins in 4656 species: Archae - 122; Bacteria - 13729; Metazoa - 45275; Fungi - 10148; Plants - 35343; Viruses - 433; Other Eukaryotes - 18010 (source: NCBI BLink).","sp|Q9ZT07|RKS1_ARATH","G-type lectin S-receptor-like serine/threonine-protein kinase RKS1","gi|721649654|ref|XP_010233163.1|",{"$nulls":4},{"v":0.319756809735071,"d":"0.32"},{"v":1.1210692101299,"d":"1.12"},{"v":0.873990150216697,"d":"0.87"},{"v":1.12036009387355,"d":"1.12"}]
["g55030.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|670382306|ref|XP_008671911.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0184772539818067,"d":"0.02"},{"v":0.136123047122971,"d":"0.14"},{"v":0,"d":"0.00"},"X"]
["g55031.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT3G24540.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q1PEM5|PERK3_ARATH","Proline-rich receptor-like protein kinase PERK3","gi|729434305|ref|XP_010520029.1|",{"$nulls":4},{"v":0.0238004834156176,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.0563646136977669,"d":"0.06"},{"v":0,"d":"0.00"}]
["g55032.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0744675232425917,"d":"0.07"},{"v":0.188393859925459,"d":"0.19"},{"v":0,"d":"0.00"},"X"]
["g55033.t1",{"$nulls":6},"ARATHwo_AT4G34460.1","Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. It seems to be involved in the calcium-mediated response to extracellular ATP.","sp|P93563|GBB_SOLTU","Guanine nucleotide-binding protein subunit beta","gi|563407387|gb|AHB52758.1|",{"$nulls":4},{"v":4.68128464714022,"d":"4.68"},{"v":5.30944591964639,"d":"5.31"},{"v":4.05591149704617,"d":"4.06"},{"v":17.1033520523939,"d":"17.10"}]
["g55034.t1",3333,"0003676:0015171:0000166",16021,"amino acid transmembrane transport","nucleic acid binding:amino acid transmembrane transporter activity:nucleotide binding","integral to membrane","ARATHwo_AT4G36960.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G07810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q920Q6|MSI2H_MOUSE","RNA-binding protein Musashi homolog 2","gi|302755192|ref|XP_002961020.1|",null,null,"x","x",{"v":38.6730449411334,"d":"38.67"},{"v":25.02303729998,"d":"25.02"},{"v":78.9002445775186,"d":"78.90"},{"v":14.0577525988343,"d":"14.06"}]
["g55035.t1",{"$nulls":10},"gi|670396018|ref|XP_008678341.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0855519809225187,"d":"0.09"},{"v":0.152853647479972,"d":"0.15"},{"v":0,"d":"0.00"}]
["g55036.t1"]
["g55037.t1","0046488:0048015:0006970:0006486",16772,44424,"phosphatidylinositol metabolic process:phosphatidylinositol-mediated signaling:response to osmotic stress:protein glycosylation","transferase activity, transferring phosphorus-containing groups","intracellular part","ARATHwo_AT3G59770.3","Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.","sp|Q7XZU0|SAC9_ARATH","Probable phosphoinositide phosphatase SAC9","gi|302805865|ref|XP_002984683.1|",{"$nulls":4},{"v":5.7655662642607,"d":"5.77"},{"v":6.79097665890385,"d":"6.79"},{"v":7.60952631914385,"d":"7.61"},{"v":2.29928607880131,"d":"2.30"}]
["g55038.t1",{"$nulls":15},{"v":0.0995243698701502,"d":"0.10"},{"v":0.642919471393599,"d":"0.64"},{"v":2.80423807424259,"d":"2.80"},{"v":1.7825089864578,"d":"1.78"}]
["g55039.t1",null,16787,null,null,"hydrolase activity",null,"ARATHwo_AT3G10740.1","Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification.","sp|Q9SG80|ASD1_ARATH","Alpha-L-arabinofuranosidase 1","gi|525327274|gb|AGR44451.1|",null,null,"x","x",{"v":5.83685573306311,"d":"5.84"},{"v":1.89965688638803,"d":"1.90"},{"v":1.82090324032985,"d":"1.82"},{"v":0.622787642742744,"d":"0.62"}]
["g55040.t1",{"$nulls":20},"X","X"]
["g55041.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|294461638|gb|ADE76379.1|",{"$nulls":8},"X"]
["g55042.t1",{"$nulls":6},"ARATHwo_AT4G34370.1","ARIADNE 1 (ARI1); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G16090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9P3U4|HEL1_SCHPO","E3 ubiquitin-protein ligase dbl4","gi|358054608|dbj|GAA99534.1|",{"$nulls":4},{"v":1.64033187847595,"d":"1.64"},{"v":0.231953308320088,"d":"0.23"},{"v":0.579889212760487,"d":"0.58"},{"v":0.0771340214631187,"d":"0.08"}]
["g55043.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0639264312542414,"d":"0.06"},{"v":0.222485261975989,"d":"0.22"},{"v":0.0717667548302663,"d":"0.07"}]
["g55044.t1",{"$nulls":6},"ARATHwo_AT2G31770.1","ARIADNE 9 (ARI9); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G31760.1); Has 3142 Blast hits to 3098 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 1294; Fungi - 651; Plants - 677; Viruses - 13; Other Eukaryotes - 507 (source: NCBI BLink).","sp|Q9SKC3|ARI9_ARATH","Probable E3 ubiquitin-protein ligase ARI9","gi|873226139|emb|CEM21973.1|"]
["g55045.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|675363786|gb|KFM56688.1|",{"$nulls":4},{"v":0.0258137255791981,"d":"0.03"},{"v":0.122430400883368,"d":"0.12"},{"v":0.441740568950627,"d":"0.44"},{"v":0.093621605701104,"d":"0.09"},"X"]
["g55046.t1",{"$nulls":13},"x","x",{"v":1.97457813337926,"d":"1.97"},{"v":0.310224886836037,"d":"0.31"},{"v":1.0995507480958,"d":"1.10"},{"v":0.204080201862753,"d":"0.20"}]
["g55047.t1",{"$nulls":8},"sp|Q8C726|BTBD9_MOUSE","BTB/POZ domain-containing protein 9","gi|552910001|gb|ERZ95917.1|"]
["g55048.t1",{"$nulls":10},"gi|747103827|ref|XP_011100121.1|"]
["g55049.t1",{"$nulls":6},"ARATHwo_AT3G50370.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink).",{"$nulls":11},"X"]
["g55050.t1",{"$nulls":10},"gi|595479733|gb|EXX68593.1|",{"$nulls":4},{"v":0.00940843262350886,"d":"0.01"},{"v":0.549963709377587,"d":"0.55"},{"v":0.0786304359462584,"d":"0.08"},{"v":0.291990320623851,"d":"0.29"}]
["g55051.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0692462621373413,"d":"0.07"},{"v":0.110324362226968,"d":"0.11"},{"v":0,"d":"0.00"},"X",null,"X"]
["g55052.t1",{"$nulls":19},"X",null,"X"]
["g55053.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.312517730700248,"d":"0.31"},{"v":0,"d":"0.00"},null,"X","X"]
["g55054.t1",null,16301,null,null,"kinase activity",null,"ARATHwo_AT5G35580.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G05940.1); Has 116021 Blast hits to 114684 proteins in 3463 species: Archae - 93; Bacteria - 13781; Metazoa - 42325; Fungi - 9577; Plants - 32686; Viruses - 372; Other Eukaryotes - 17187 (source: NCBI BLink).","sp|Q9FE20|PBS1_ARATH","Serine/threonine-protein kinase PBS1","gi|157101304|dbj|BAF79983.1|",null,"x",null,"x",{"v":3.93902217821462,"d":"3.94"},{"v":1.28062676506332,"d":"1.28"},{"v":2.93117792908265,"d":"2.93"},{"v":0.533012589809377,"d":"0.53"}]
["g55055.t1",{"$nulls":10},"gi|657997735|ref|XP_008391257.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.604519706505218,"d":"0.60"},{"v":2.95495374877838,"d":"2.95"},{"v":1.13609803123143,"d":"1.14"},null,"X"]
["g55056.t1",{"$nulls":6},"ARATHwo_AT4G18670.1","Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 60217 Blast hits to 20533 proteins in 968 species: Archae - 15; Bacteria - 2115; Metazoa - 6070; Fungi - 1014; Plants - 47629; Viruses - 97; Other Eukaryotes - 3277 (source: NCBI BLink).",null,null,"gi|4235644|gb|AAD13304.1|",{"$nulls":4},{"v":3.54042015764511,"d":"3.54"},{"v":3.44884210791136,"d":"3.45"},{"v":3.97571871059888,"d":"3.98"},{"v":0.60250823496164,"d":"0.60"}]
["g55057.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.0625342361390304,"d":"0.06"},{"v":0.124319133825482,"d":"0.12"},{"v":0.177096378460203,"d":"0.18"},{"v":0.0994310153405807,"d":"0.10"},"X"]
["g55058.t1",{"$nulls":19},"X",null,"X"]
["g55059.t1",{"$nulls":8},"sp|P03360|POL_AVIRE","Pol polyprotein","gi|49256739|emb|CAG34127.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0463262825793,"d":"0.05"},{"v":0.447616167944172,"d":"0.45"},{"v":0,"d":"0.00"},"X"]
["g55060.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|77554634|gb|ABA97430.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.348092412358541,"d":"0.35"},{"v":1.71087485652506,"d":"1.71"},{"v":0.398062881075168,"d":"0.40"},"X"]
["g55061.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|861617032|gb|KMQ86489.1|",{"$nulls":4},{"v":0.0433985048281366,"d":"0.04"},{"v":0.18113292927511,"d":"0.18"},{"v":0.847223881572838,"d":"0.85"},{"v":0.192101096801699,"d":"0.19"},"X"]
["g55062.t1",{"$nulls":6},"ARATHwo_AT4G16162.1","Leucine-rich repeat (LRR) family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9SSD1|TMM_ARATH","Protein TOO MANY MOUTHS",{"$nulls":5},{"v":4.50273329838293,"d":"4.50"},{"v":6.40373915748314,"d":"6.40"},{"v":3.40470776957987,"d":"3.40"},{"v":1.03131663404425,"d":"1.03"}]
["g55063.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.209489080175146,"d":"0.21"},{"v":0.500322907635393,"d":"0.50"},{"v":0.172240460678308,"d":"0.17"},"X"]
["g1119.t1",{"$nulls":6},"ARATHwo_AT1G05460.1","Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.",{"$nulls":7},{"v":25.885899134471,"d":"25.89"},{"v":8.10991752935832,"d":"8.11"},{"v":5.87753140085548,"d":"5.88"},{"v":29.9804581696281,"d":"29.98"}]
["g1120.t1","0016570:0016246:0009908:0051726:0009653:0048507:0006342:0007127:0070918:0043414:0006260:0006310:0006950","1901363:0046872:0016491:0097159:0016757",null,"histone modification:RNA interference:flower development:regulation of cell cycle:anatomical structure morphogenesis:meristem development:chromatin silencing:meiosis I:production of small RNA involved in gene silencing by RNA:macromolecule methylation:DNA replication:DNA recombination:response to stress","heterocyclic compound binding:metal ion binding:oxidoreductase activity:organic cyclic compound binding:transferase activity, transferring glycosyl groups",null,"ARATHwo_AT2G31320.1","PARP2 can catalyze self poly-ADP-ribosylation. It in an abiotic stress-inducible gene.","sp|Q7EYV7|PARP1_ORYSJ","Poly [ADP-ribose] polymerase 1","gi|763775118|gb|KJB42241.1|",null,null,"x","x",{"v":4.43680497330762,"d":"4.44"},{"v":7.59350772262419,"d":"7.59"},{"v":7.98800263796975,"d":"7.99"},{"v":26.6061065033778,"d":"26.61"}]
["g1121.t1","0055085:0006812",null,16020,"transmembrane transport:cation transport",null,"membrane","ARATHwo_AT2G47830.1","Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT3G58060.1); Has 9484 Blast hits to 9472 proteins in 2416 species: Archae - 234; Bacteria - 7791; Metazoa - 296; Fungi - 408; Plants - 276; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).","sp|Q8L725|MTPC1_ARATH","Metal tolerance protein C1","gi|168053759|ref|XP_001779302.1|",{"$nulls":4},{"v":3.08890794858997,"d":"3.09"},{"v":1.15172825674306,"d":"1.15"},{"v":1.1014725487267,"d":"1.10"},{"v":3.96044861166715,"d":"3.96"}]
["g1122.t1",{"$nulls":15},{"v":1.1075425567387,"d":"1.11"},{"v":0.259582915333851,"d":"0.26"},{"v":9.04577229600663,"d":"9.05"},{"v":0.235278850889868,"d":"0.24"}]
["g1123.t1",{"$nulls":10},"gi|242064624|ref|XP_002453601.1|",{"$nulls":8},"X"]
["g1124.t1"]
["g1125.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0339276663666567,"d":"0.03"},{"v":0.119494027833934,"d":"0.12"},{"v":0.144174623580181,"d":"0.14"},"X"]
["g1126.t1"]
["g1127.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|813213903|dbj|GAO47244.1|",{"$nulls":8},"X"]
["g1128.t1"]
["g1129.t1",{"$nulls":6},"ARATHwo_AT4G15020.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|670388583|ref|XP_008674752.1|"]
["g1130.t1",9987,"0005488:0016301",null,"cellular process","binding:kinase activity",null,"ARATHwo_AT5G18610.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G13160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FFW5|PERK8_ARATH","Proline-rich receptor-like protein kinase PERK8","gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":0.106631428717509,"d":"0.11"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g1131.t1"]
["g1132.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|661175376|emb|CDH61339.1|",{"$nulls":8},"X"]
["g1133.t1",{"$nulls":8},"sp|D4AV98|A0107_ARTBC","Uncharacterized secreted protein ARB_00107","gi|530476449|gb|EQB56344.1|",{"$nulls":4},{"v":1.61481393976136,"d":"1.61"},{"v":1.73573714667438,"d":"1.74"},{"v":11.7456619843582,"d":"11.75"},{"v":0,"d":"0.00"}]
["g1134.t1",{"$nulls":6},"ARATHwo_AT3G13030.1","hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|658032340|ref|XP_008351676.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0563259839878493,"d":"0.06"},{"v":0.0437693561569347,"d":"0.04"},null,"X"]
["g1135.t1",{"$nulls":6},"ARATHwo_AT3G13010.1","hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 542 Blast hits to 530 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 539; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|"]
["g1136.t1"]
["g1137.t1",6413,"0004386:0005524:0003743",null,"translational initiation","helicase activity:ATP binding:translation initiation factor activity",null,"ARATHwo_AT1G54270.1","member of eIF4A - eukaryotic initiation factor 4A","sp|P41377|IF4A2_ARATH","Eukaryotic initiation factor 4A-2","gi|302765659|ref|XP_002966250.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.804321560919914,"d":"0.80"}]
["g1138.t1"]
["g1139.t1",{"$nulls":10},"gi|582957989|gb|EWC46201.1|",null,"x",null,"x",{"v":0.157188275034301,"d":"0.16"},{"v":0.221647115535179,"d":"0.22"},{"v":0.0991238633176817,"d":"0.10"},{"v":0.384021363473277,"d":"0.38"}]
["g1140.t1",{"$nulls":10},"gi|582957989|gb|EWC46201.1|",null,"x",null,"x",{"v":0.261048947927143,"d":"0.26"},{"v":0.0417251605015767,"d":"0.04"},{"v":0.215155228636243,"d":"0.22"},{"v":0.875673420399814,"d":"0.88"}]
["g1141.t1",{"$nulls":8},"sp|D4ATM6|A7590_ARTBC","Uncharacterized secreted protein ARB_07590","gi|576042406|ref|XP_006695076.1|",{"$nulls":4},{"v":0.20026267097738,"d":"0.20"},{"v":0.374930375675547,"d":"0.37"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g1142.t1",{"$nulls":10},"gi|582957989|gb|EWC46201.1|",null,"x",null,"x"]
["g1143.t1"]
["g1144.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q17QR8|HARB1_BOVIN","Putative nuclease HARBI1","gi|919054675|ref|XP_013409304.1|",{"$nulls":9},"X"]
["g1145.t1",{"$nulls":10},"gi|582957989|gb|EWC46201.1|",null,"x",null,"x"]
["g1146.t1"]
["g1147.t1",{"$nulls":8},"sp|D4AV98|A0107_ARTBC","Uncharacterized secreted protein ARB_00107","gi|582957989|gb|EWC46201.1|",null,"x",null,"x",{"v":0.889489552336375,"d":"0.89"},{"v":0,"d":"0.00"},{"v":0.377410612954708,"d":"0.38"},{"v":1.14430681501517,"d":"1.14"}]
["g1148.t1",{"$nulls":10},"gi|582957989|gb|EWC46201.1|",null,"x",null,"x",{"v":0.0968417918418736,"d":"0.10"},{"v":0.174100750685069,"d":"0.17"},{"v":0,"d":"0.00"},{"v":2.55141463910946,"d":"2.55"}]
["g1149.t1",{"$nulls":10},"gi|258570413|ref|XP_002544010.1|"]
["g1150.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595459452|gb|EXX62860.1|",{"$nulls":8},"X"]
["g1151.t1",{"$nulls":20},"X","X"]
["g1152.t1"]
["g1153.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0501143362898477,"d":"0.05"},{"v":0,"d":"0.00"}]
["g1154.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.118187222872391,"d":"0.12"},{"v":0,"d":"0.00"}]
["g1155.t1"]
["g1156.t1",{"$nulls":8},"sp|A2R7P5|NST1_ASPNC","Stress response protein nst1"]
["g1157.t1",{"$nulls":10},"gi|501193131|ref|WP_012236149.1|"]
["g1158.t1"]
["g1159.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",16023,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity","cytoplasmic membrane-bounded vesicle",{"$nulls":4},"gi|670382306|ref|XP_008671911.1|",{"$nulls":9},"X"]
["g1160.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3"]
["g1161.t1",{"$nulls":10},"gi|752281344|dbj|GAM83323.1|",{"$nulls":4},{"v":0.0919702896592399,"d":"0.09"},{"v":0.102040760874919,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0.20706002862269,"d":"0.21"}]
["g1162.t1",{"$nulls":10},"gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0904658659296313,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g1163.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|512848095|ref|XP_004915414.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0449695219546993,"d":"0.04"},{"v":0.291285533208158,"d":"0.29"},{"v":0.246807835739017,"d":"0.25"},"X"]
["g1164.t1",{"$nulls":10},"gi|636759021|ref|XP_008081684.1|",{"$nulls":4},{"v":0.464233891775098,"d":"0.46"},{"v":0,"d":"0.00"},{"v":0.287111560491029,"d":"0.29"},{"v":0.260471901870159,"d":"0.26"}]
["g1165.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.154101483500888,"d":"0.15"},{"v":0,"d":"0.00"},"X"]
["g1166.t1",{"$nulls":19},"X",null,"X"]
["g1167.t1",{"$nulls":8},"sp|D4ATM6|A7590_ARTBC","Uncharacterized secreted protein ARB_07590","gi|303324279|ref|XP_003072127.1|",{"$nulls":4},{"v":0.361040932442207,"d":"0.36"},{"v":0.0904922704936601,"d":"0.09"},{"v":0.910364129619822,"d":"0.91"},{"v":0.99800687473365,"d":"1.00"},null,"X"]
["g1168.t1",{"$nulls":10},"gi|147845089|emb|CAN78459.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.459603329211031,"d":"0.46"},{"v":0.0838680855973937,"d":"0.08"}]
["g1169.t1"]
["g1170.t1",{"$nulls":15},{"v":17.981535808581,"d":"17.98"},{"v":50.4529347744957,"d":"50.45"},{"v":144.605171201294,"d":"144.61"},{"v":157.282406652567,"d":"157.28"}]
["g1171.t1",{"$nulls":19},"X",null,"X"]
["g1172.t1",{"$nulls":8},"sp|Q6ZNG9|KRBA2_HUMAN","KRAB-A domain-containing protein 2","gi|471875284|emb|CCO35858.1|",{"$nulls":8},"X"]
["g1173.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.079323004422159,"d":"0.08"},{"v":0,"d":"0.00"},"X",null,"X"]
["g1174.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":2.7207408203724,"d":"2.72"}]
["g1175.t1",{"$nulls":15},{"v":0.0699400203498999,"d":"0.07"},{"v":0.755248489600796,"d":"0.76"},{"v":5.18275570378775,"d":"5.18"},{"v":3.47120739431676,"d":"3.47"},null,"X","X"]
["g1176.t1",{"$nulls":15},{"v":0.0807280553827075,"d":"0.08"},{"v":0.580088372621028,"d":"0.58"},{"v":0,"d":"0.00"},{"v":2.98486551307441,"d":"2.98"}]
["g1177.t1",{"$nulls":15},{"v":0.0550818738881996,"d":"0.06"},{"v":0.583445143379497,"d":"0.58"},{"v":1.33736806828136,"d":"1.34"},{"v":0.104281855746225,"d":"0.10"},"X",null,"X"]
["g1178.t1"]
["g1179.t1",{"$nulls":15},{"v":0.0380749655095229,"d":"0.04"},{"v":0.319302349972679,"d":"0.32"},{"v":0,"d":"0.00"},{"v":12.1638833950193,"d":"12.16"}]
["g1180.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|571440361|ref|XP_006575130.1|",{"$nulls":4},{"v":0.0694754398298641,"d":"0.07"},{"v":0,"d":"0.00"},{"v":1.13559712046953,"d":"1.14"},{"v":0,"d":"0.00"}]
["g1181.t1",{"$nulls":8},"sp|A1JN63|PLSX_YERE8","Phosphate acyltransferase",{"$nulls":5},{"v":0.663415779030204,"d":"0.66"},{"v":0.92273815667008,"d":"0.92"},{"v":0.24177990696435,"d":"0.24"},{"v":14.6588124559832,"d":"14.66"}]
["g1182.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0405162317116467,"d":"0.04"},{"v":0.0377887682341347,"d":"0.04"},{"v":0,"d":"0.00"}]
["g1183.t1",{"$nulls":13},"x","x",{"v":0,"d":"0.00"},{"v":0.978609408573889,"d":"0.98"},{"v":0,"d":"0.00"},{"v":33.7932378579347,"d":"33.79"}]
["g1184.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":1.09767134047402,"d":"1.10"},{"v":8.55824478633945,"d":"8.56"},{"v":2.05549765810041,"d":"2.06"},"X",null,"X"]
["g1185.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",{"$nulls":5},"gi|157101304|dbj|BAF79983.1|"]
["g1186.t1",{"$nulls":6},"ARATHwo_AT2G33550.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3",null,"x"]
["g1187.t1",{"$nulls":6},"ARATHwo_AT5G41980.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|632961670|ref|XP_007896889.1|",{"$nulls":4},{"v":0.165888646204564,"d":"0.17"},{"v":0.094350887934716,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0.236130696580111,"d":"0.24"},null,"X"]
["g1188.t1",{"$nulls":11},"x"]
["g1189.t1"]
["g1190.t1",{"$nulls":10},"gi|157101304|dbj|BAF79983.1|"]
["g1191.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",{"$nulls":5},"gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":0.0553734920416286,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0526789978735437,"d":"0.05"}]
["g1192.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",{"$nulls":5},"gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.182756362172935,"d":"0.18"}]
["g1193.t1"]
["g1194.t1",{"$nulls":10},"gi|157101304|dbj|BAF79983.1|"]
["g1195.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",{"$nulls":5},"gi|157101304|dbj|BAF79983.1|"]
["g1196.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|340382901|ref|XP_003389956.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0662839734964277,"d":"0.07"},{"v":0.196322733754072,"d":"0.20"},"X"]
["g1197.t1"]
["g1198.t1",{"$nulls":10},"gi|157101304|dbj|BAF79983.1|"]
["g1199.t1"]
["g1200.t1",{"$nulls":19},"X",null,"X"]
["g1201.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.05024183664489,"d":"0.05"},{"v":0.289558981648326,"d":"0.29"}]
["g1202.t1",{"$nulls":19},"X",null,"X"]
["g1203.t1",{"$nulls":19},"X",null,"X"]
["g1204.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT3G20200.1","Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G16760.1); Has 113274 Blast hits to 111719 proteins in 4667 species: Archae - 115; Bacteria - 13449; Metazoa - 41561; Fungi - 9228; Plants - 32231; Viruses - 306; Other Eukaryotes - 16384 (source: NCBI BLink).","sp|Q9SW11|PUB35_ARATH","U-box domain-containing protein 35","gi|356522380|ref|XP_003529824.1|",{"$nulls":4},{"v":0.111583613682956,"d":"0.11"},{"v":0,"d":"0.00"},{"v":0.0730637781785547,"d":"0.07"},{"v":0,"d":"0.00"}]
["g1205.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G80640.1","Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G25220.1); Has 94022 Blast hits to 93095 proteins in 3443 species: Archae - 76; Bacteria - 9181; Metazoa - 34848; Fungi - 7011; Plants - 29890; Viruses - 292; Other Eukaryotes - 12724 (source: NCBI BLink).","sp|Q0V7T5|Y1864_ARATH","Probable receptor-like protein kinase At1g80640","gi|571450226|ref|XP_006578363.1|",null,null,"x","x",{"v":0.53408563999113,"d":"0.53"},{"v":2.43309670908534,"d":"2.43"},{"v":0,"d":"0.00"},{"v":2.4735799883534,"d":"2.47"}]
["g1206.t1",{"$nulls":8},"sp|P27401|POL_SFV3L","Pro-Pol polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.251122729377911,"d":"0.25"},{"v":1.00493658914108,"d":"1.00"},{"v":0.41626183869908,"d":"0.42"},null,"X"]
["g1207.t1","0043170:0044238",3824,null,"macromolecule metabolic process:primary metabolic process","catalytic activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q9UR07|TF211_SCHPO","Transposon Tf2-11 polyprotein","gi|4539021|emb|CAB39733.1|",{"$nulls":4},{"v":0.134764791207928,"d":"0.13"},{"v":0.566012982055638,"d":"0.57"},{"v":0.317702092649709,"d":"0.32"},{"v":1.27994399812749,"d":"1.28"},null,"X"]
["g1208.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|795013585|ref|XP_011883584.1|",{"$nulls":9},"X"]
["g1209.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT5G38240.1","Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT5G38250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q05652|KPEL_DROME","Serine/threonine-protein kinase pelle","gi|747060202|ref|XP_011076521.1|",{"$nulls":4},{"v":0.198351431454615,"d":"0.20"},{"v":0.543684260392831,"d":"0.54"},{"v":0.0734086853291533,"d":"0.07"},{"v":0.759402639935552,"d":"0.76"}]
["g1210.t1"]
["g1211.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923912317|ref|XP_013725862.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.459030185294194,"d":"0.46"},{"v":4.10477468243986,"d":"4.10"},{"v":0.818757508918277,"d":"0.82"},"X"]
["g1212.t1",{"$nulls":15},{"v":1.46313425169342,"d":"1.46"},{"v":8.04747150994155,"d":"8.05"},{"v":30.2967236635285,"d":"30.30"},{"v":16.6932319318275,"d":"16.69"},"X",null,"X"]
["g1213.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT5G61550.2","U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).","sp|Q9FKG6|PUB52_ARATH","U-box domain-containing protein 52","gi|674881357|emb|CDY50937.1|",{"$nulls":4},{"v":0.0447080116765403,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.405120457204943,"d":"0.41"}]
["g1214.t1",6412,"0003735:0019843",15935,"translation","structural constituent of ribosome:rRNA binding","small ribosomal subunit","ARATHwo_AT5G15200.1","Ribosomal protein S4; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (TAIR:AT5G39850.1); Has 5786 Blast hits to 5783 proteins in 2880 species: Archae - 264; Bacteria - 571; Metazoa - 422; Fungi - 281; Plants - 3526; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).","sp|Q9LXG1|RS91_ARATH","40S ribosomal protein S9-1","gi|729356356|ref|XP_010545191.1|",null,"x","x","x",{"v":0.754446881479797,"d":"0.75"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g1215.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink)."]
["g1216.t1","0061024:0006891",5080,30126,"membrane organization:intra-Golgi vesicle-mediated transport","protein kinase C binding","COPI vesicle coat","ARATHwo_AT5G61550.2","U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).","sp|Q9FKG6|PUB52_ARATH","U-box domain-containing protein 52","gi|470427967|ref|XP_004338045.1|",{"$nulls":4},{"v":0.379229011300382,"d":"0.38"},{"v":0.419332551533148,"d":"0.42"},{"v":0,"d":"0.00"},{"v":6.95870654473055,"d":"6.96"}]
["g55064.t1",{"$nulls":15},{"v":2.53882310717683,"d":"2.54"},{"v":1.60637730507885,"d":"1.61"},{"v":1.51542268807856,"d":"1.52"},{"v":3.6219516094858,"d":"3.62"}]
["g55065.t1"]
["g55066.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q17QR8|HARB1_BOVIN","Putative nuclease HARBI1","gi|688559892|ref|XP_009300611.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0756127233348167,"d":"0.08"},{"v":0.072917677809521,"d":"0.07"},{"v":0,"d":"0.00"},null,"X"]
["g55067.t1",{"$nulls":6},"ARATHwo_AT4G32272.2","Nucleotide/sugar transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: UDP-N-acetylglucosamine (UAA) transporter family (TAIR:AT4G31600.1).","sp|Q54YK1|Y8631_DICDI","Putative UDP-sugar transporter DDB_G0278631","gi|760442789|ref|XP_011398463.1|",{"$nulls":4},{"v":1.25474659159016,"d":"1.25"},{"v":3.75870005867496,"d":"3.76"},{"v":0.47776306196791,"d":"0.48"},{"v":2.90630151366275,"d":"2.91"}]
["g55068.t1",{"$nulls":20},"X","X"]
["g55069.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.209264216541859,"d":"0.21"},{"v":0,"d":"0.00"}]
["g55070.t1",{"$nulls":8},"sp|Q8DI58|DNAK2_THEEB","Chaperone protein dnaK2","gi|676379989|ref|XP_009033273.1|",{"$nulls":4},{"v":8.06117914354071,"d":"8.06"},{"v":5.3979970095566,"d":"5.40"},{"v":3.67888486041019,"d":"3.68"},{"v":4.01887825653017,"d":"4.02"}]
["g55071.t1",{"$nulls":6},"ARATHwo_AT1G16030.1","heat shock protein 70B (Hsp70b); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: cytosol, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (TAIR:AT3G12580.1); Has 33913 Blast hits to 33562 proteins in 4835 species: Archae - 164; Bacteria - 16454; Metazoa - 3784; Fungi - 1785; Plants - 1262; Viruses - 309; Other Eukaryotes - 10155 (source: NCBI BLink).","sp|P26413|HSP70_SOYBN","Heat shock 70 kDa protein","gi|747043189|ref|XP_011082530.1|",{"$nulls":4},{"v":0.605377436378475,"d":"0.61"},{"v":0.134387993187581,"d":"0.13"},{"v":0,"d":"0.00"},{"v":0.883938771462324,"d":"0.88"}]
["g55072.t1",{"$nulls":12},"x","x","x",{"v":22.5509702971817,"d":"22.55"},{"v":13.5840993655863,"d":"13.58"},{"v":8.25005978957998,"d":"8.25"},{"v":0,"d":"0.00"}]
["g55073.t1",{"$nulls":13},"x","x",{"v":3.03584507598045,"d":"3.04"},{"v":0.302274442595576,"d":"0.30"},{"v":0.487043355250487,"d":"0.49"},{"v":0.208593945375901,"d":"0.21"}]
["g55074.t1",{"$nulls":13},"x","x",{"v":16.3869710560896,"d":"16.39"},{"v":23.085738011765,"d":"23.09"},{"v":12.5640898418309,"d":"12.56"},{"v":1.00580438646542,"d":"1.01"}]
["g55075.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.119313770022827,"d":"0.12"},{"v":0.365429018382802,"d":"0.37"},{"v":0,"d":"0.00"},"X",null,"X"]
["g55076.t1",{"$nulls":20},"X","X"]
["g55077.t1",{"$nulls":15},{"v":0.0527225516095131,"d":"0.05"},{"v":0.109932798452576,"d":"0.11"},{"v":0.193837970857748,"d":"0.19"},{"v":0.0998579259714617,"d":"0.10"}]
["g55078.t1",{"$nulls":6},"ARATHwo_AT2G43160.3","ENTH/VHS family protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G59290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",null,null,"gi|599101080|ref|XP_007381139.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.148294427186786,"d":"0.15"},{"v":0.955133375211211,"d":"0.96"},{"v":0.0799073653059867,"d":"0.08"},"X"]
["g55079.t1","0009987:0044699",null,null,"cellular process:single-organism process",null,null,"ARATHwo_AT2G45130.1","Expression is upregulated in the shoot of cax1/cax3 mutant.","sp|Q5PP62|SPX3_ARATH","SPX domain-containing protein 3","gi|661887090|emb|CDP09499.1|",null,null,"x","x",{"v":19.3439795231888,"d":"19.34"},{"v":8.42001582102523,"d":"8.42"},{"v":5.73428511736157,"d":"5.73"},{"v":6.01234721643359,"d":"6.01"}]
["g55080.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0564145829678753,"d":"0.06"},{"v":0.0775731294748057,"d":"0.08"},{"v":0.224594317464571,"d":"0.22"},"X",null,"X"]
["g80515.t1",{"$nulls":19},"X",null,"X"]
["g55081.t1",{"$nulls":6},"ARATHwo_AT4G31670.1","ubiquitin-specific protease 18 (UBP18); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.1); Has 9064 Blast hits to 8065 proteins in 324 species: Archae - 2; Bacteria - 451; Metazoa - 4433; Fungi - 1481; Plants - 999; Viruses - 9; Other Eukaryotes - 1689 (source: NCBI BLink).",null,null,"gi|552812223|ref|XP_005843658.1|",{"$nulls":4},{"v":0.0899213626492002,"d":"0.09"},{"v":0.698094413604762,"d":"0.70"},{"v":0.173156506720928,"d":"0.17"},{"v":13.3478616839291,"d":"13.35"}]
["g55082.t1",{"$nulls":8},"sp|Q12019|MDN1_YEAST","Midasin","gi|599396286|ref|XP_007400047.1|",{"$nulls":4},{"v":0.464361820353438,"d":"0.46"},{"v":0.701625466061441,"d":"0.70"},{"v":0.409158168526191,"d":"0.41"},{"v":10.0245565524325,"d":"10.02"}]
["g55083.t1",{"$nulls":6},"ARATHwo_AT2G24640.1","ubiquitin-specific protease 19 (UBP19); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1); Has 10197 Blast hits to 8718 proteins in 376 species: Archae - 10; Bacteria - 271; Metazoa - 4969; Fungi - 1754; Plants - 1124; Viruses - 12; Other Eukaryotes - 2057 (source: NCBI BLink).","sp|Q2YDC9|PDCD2_BOVIN","Programmed cell death protein 2",null,null,"x","x","x",{"v":0.33381078942821,"d":"0.33"},{"v":1.31548517557836,"d":"1.32"},{"v":0.623456091874498,"d":"0.62"},{"v":2.58791887387537,"d":"2.59"}]
["g55084.t1",null,5488,null,null,"binding",null,"ARATHwo_AT1G54560.1","member of Myosin-like proteins","sp|F4HWY6|MYO11_ARATH","Myosin-11","gi|9453839|dbj|BAB03273.1|",null,null,"x","x",{"v":2.03371512998278,"d":"2.03"},{"v":11.3195670859142,"d":"11.32"},{"v":14.2879195926545,"d":"14.29"},{"v":15.9341645781191,"d":"15.93"}]
["g80518.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.426116052723893,"d":"0.43"},{"v":2.88929028002032,"d":"2.89"},{"v":0.432123589899963,"d":"0.43"},"X",null,"X"]
["g80527.t1","0031348:0006098:0009595:0009867:0009697:0009862:0043085:0010363:0010310:0010207:0010200:0043900:0006612:0050832:0009773:0000165:0019761:0009409:0009657:0006364","0050660:0050661:0045156:0008266:0045157:0004324","0009941:0048046:0031977:0009570:0009535","negative regulation of defense response:pentose-phosphate shunt:detection of biotic stimulus:jasmonic acid mediated signaling pathway:salicylic acid biosynthetic process:systemic acquired resistance, salicylic acid mediated signaling pathway:positive regulation of catalytic activity:regulation of plant-type hypersensitive response:regulation of hydrogen peroxide metabolic process:photosystem II assembly:response to chitin:regulation of multi-organism process:protein targeting to membrane:defense response to fungus:photosynthetic electron transport in photosystem I:MAPK cascade:glucosinolate biosynthetic process:response to cold:plastid organization:rRNA processing","flavin adenine dinucleotide binding:NADP binding:electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity:poly(U) RNA binding:electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity:ferredoxin-NADP+ reductase activity","chloroplast envelope:apoplast:thylakoid lumen:chloroplast stroma:chloroplast thylakoid membrane","ARATHwo_AT5G66190.1","Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.","sp|P10933|FENR1_PEA","Ferredoxin--NADP reductase, leaf isozyme, chloroplastic","gi|302824157|ref|XP_002993724.1|",null,"x","x","x",{"v":367.235427529255,"d":"367.24"},{"v":31.9407328044675,"d":"31.94"},{"v":24.354853639711,"d":"24.35"},{"v":3.802839853232,"d":"3.80"}]
["g80528.t1",{"$nulls":8},"sp|Q11011|PSA_MOUSE","Puromycin-sensitive aminopeptidase","gi|818379410|gb|KKQ59165.1|",null,null,"x","x",{"v":27.9985741886494,"d":"28.00"},{"v":46.3477682482386,"d":"46.35"},{"v":24.4980782775071,"d":"24.50"},{"v":31.7274477320327,"d":"31.73"}]
["g80535.t1",{"$nulls":8},"sp|Q8K337|I5P2_MOUSE","Type II inositol 1,4,5-trisphosphate 5-phosphatase","gi|168064583|ref|XP_001784240.1|",null,null,"x","x",{"v":1.9177105608664,"d":"1.92"},{"v":7.50547349145199,"d":"7.51"},{"v":5.54387329756122,"d":"5.54"},{"v":3.94503891896567,"d":"3.95"}]
["g80544.t1",{"$nulls":6},"ARATHwo_AT2G22400.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G40000.1); Has 8976 Blast hits to 8942 proteins in 2412 species: Archae - 298; Bacteria - 6215; Metazoa - 583; Fungi - 307; Plants - 251; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink).","sp|Q9W4M9|NSUN2_DROME","tRNA (cytosine(34)-C(5))-methyltransferase","gi|302793867|ref|XP_002978698.1|",null,null,"x","x",{"v":5.67693690338812,"d":"5.68"},{"v":9.78481021419248,"d":"9.78"},{"v":7.57595785752475,"d":"7.58"},{"v":4.88804804682381,"d":"4.89"}]
["g55161.t1","0048513:0044723:0009987","0016799:0015924:0046872","0016020:0005794","organ development:single-organism carbohydrate metabolic process:cellular process","hydrolase activity, hydrolyzing N-glycosyl compounds:mannosyl-oligosaccharide mannosidase activity:metal ion binding","membrane:Golgi apparatus","ARATHwo_AT5G14950.1","Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.","sp|Q9LFR0|GMAN2_ARATH","Alpha-mannosidase 2","gi|302823662|ref|XP_002993481.1|",null,null,"x","x",{"v":0.201934517935963,"d":"0.20"},{"v":1.23071893725731,"d":"1.23"},{"v":11.8937271889165,"d":"11.89"},{"v":0.0762513715152423,"d":"0.08"}]
["g55162.t1",{"$nulls":6},"ARATHwo_AT3G01570.1","Oleosin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: oleosin 2 (TAIR:AT5G40420.1); Has 516 Blast hits to 516 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|Q9SS98|OLEO5_ARATH","Oleosin 5","gi|694319358|ref|XP_009346735.1|",null,null,"x","x",{"v":0.692908383110549,"d":"0.69"},{"v":29.0920089897293,"d":"29.09"},{"v":5.61826663076691,"d":"5.62"},{"v":138.23120509041,"d":"138.23"}]
["g55163.t1",{"$nulls":6},"ARATHwo_AT4G03120.1","C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, U1-C type (InterPro:IPR013085), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|F6HQ26|RU1C_VITVI","U1 small nuclear ribonucleoprotein C","gi|294460061|gb|ADE75613.1|",null,null,"x","x",{"v":12.8494620397264,"d":"12.85"},{"v":23.8725963455236,"d":"23.87"},{"v":24.850430240947,"d":"24.85"},{"v":35.1595917796475,"d":"35.16"}]
["g55164.t1",6810,null,null,"transport",null,null,"ARATHwo_AT3G16240.1","Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.","sp|Q41951|TIP21_ARATH","Aquaporin TIP2-1","gi|167537318|ref|XP_001750328.1|",null,null,"x","x",{"v":0.307132216660762,"d":"0.31"},{"v":0.908984240539805,"d":"0.91"},{"v":77.3747366359813,"d":"77.37"},{"v":1.07016640685393,"d":"1.07"}]
["g55165.t1",6511,4298,"0005737:0019773:0005634","ubiquitin-dependent protein catabolic process","threonine-type endopeptidase activity","cytoplasm:proteasome core complex, alpha-subunit complex:nucleus","ARATHwo_AT5G66140.1","Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.","sp|Q9SXU1|PSA7_CICAR","Proteasome subunit alpha type-7","gi|168066948|ref|XP_001785391.1|",null,null,"x","x",{"v":21.8021394721413,"d":"21.80"},{"v":33.9041747080915,"d":"33.90"},{"v":15.4362714605875,"d":"15.44"},{"v":28.7667973706193,"d":"28.77"}]
["g55166.t1",{"$nulls":15},{"v":21.5942966398714,"d":"21.59"},{"v":78.9879229559868,"d":"78.99"},{"v":193.93818114245,"d":"193.94"},{"v":110.795950836386,"d":"110.80"}]
["g55167.t1",{"$nulls":15},{"v":4.13960739354915,"d":"4.14"},{"v":16.2469463003981,"d":"16.25"},{"v":41.2526709154698,"d":"41.25"},{"v":29.60847985432,"d":"29.61"}]
["g55168.t1","0006066:0008202",16853,16020,"alcohol metabolic process:steroid metabolic process","isomerase activity","membrane","ARATHwo_AT1G20050.1","C-8 sterol isomerase that also plays a role in miRNA function.","sp|Q9FTZ2|EBP_ORYSJ","Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase","gi|545370320|ref|XP_005649810.1|",null,null,"x","x",{"v":12.3091520544824,"d":"12.31"},{"v":5.89972262491358,"d":"5.90"},{"v":3.02676804605684,"d":"3.03"},{"v":0.394146134639803,"d":"0.39"}]
["g55204.t1",44699,null,null,"single-organism process",null,null,"ARATHwo_AT1G71870.1","MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink).","sp|Q9LE20|DTX54_ARATH","Protein DETOXIFICATION 54","gi|302772513|ref|XP_002969674.1|"]
["g55205.t1"]
["g55206.t1",{"$nulls":6},"ARATHwo_AT5G19700.1","MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q4PSF4|DTX52_ARATH","Protein DETOXIFICATION 52","gi|590677822|ref|XP_007040126.1|",null,null,"x","x",{"v":0.657583158120175,"d":"0.66"},{"v":10.0656406510828,"d":"10.07"},{"v":6.4144191204076,"d":"6.41"},{"v":0.323896493405504,"d":"0.32"}]
["g55207.t1",{"$nulls":8},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|848901450|ref|XP_012850841.1|",{"$nulls":4},{"v":0.0296353745737594,"d":"0.03"},{"v":0.0571173811882861,"d":"0.06"},{"v":0.180430322413535,"d":"0.18"},{"v":0,"d":"0.00"},"X"]
["g55208.t1",{"$nulls":6},"ARATHwo_AT4G36020.1","Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature.","sp|Q86VL8|S47A2_HUMAN","Multidrug and toxin extrusion protein 2","gi|703140995|ref|XP_010107396.1|",{"$nulls":4},{"v":1.49359821571706,"d":"1.49"},{"v":6.5757707211519,"d":"6.58"},{"v":2.27059365080733,"d":"2.27"},{"v":1.04824884570884,"d":"1.05"}]
["g55209.t1",{"$nulls":6},"ARATHwo_AT5G16780.1","Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes.","sp|Q9LFE0|DOT2_ARATH","SART-1 family protein DOT2",{"$nulls":5},{"v":1.58567101099411,"d":"1.59"},{"v":2.75016018649635,"d":"2.75"},{"v":5.28926722645463,"d":"5.29"},{"v":8.89586961227077,"d":"8.90"}]
["g55210.t1",{"$nulls":10},"gi|586751001|ref|XP_006851894.1|",{"$nulls":9},"X"]
["g55211.t1",{"$nulls":6},"ARATHwo_AT1G33410.1","SUPPRESSOR OF AUXIN RESISTANCE1 (SAR1); CONTAINS InterPro DOMAIN/s: Nucleoporin Nup120/160 (InterPro:IPR021717); Has 209 Blast hits to 198 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 29; Plants - 47; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).","sp|Q9C811|NU160_ARATH","Nuclear pore complex protein NUP160","gi|923732912|ref|XP_013668695.1|",null,null,"x","x",{"v":1.85168853811465,"d":"1.85"},{"v":4.05623004036885,"d":"4.06"},{"v":2.70407631413142,"d":"2.70"},{"v":3.03188368483757,"d":"3.03"}]
["g55211.t2",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923732912|ref|XP_013668695.1|",null,null,"x","x",{"v":1.85168853811465,"d":"1.85"},{"v":4.05623004036885,"d":"4.06"},{"v":2.70407631413142,"d":"2.70"},{"v":3.03188368483757,"d":"3.03"}]
["g55212.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|848915480|ref|XP_012855479.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.097252428942162,"d":"0.10"},{"v":0.207231901728134,"d":"0.21"},{"v":0.148986469831512,"d":"0.15"}]
["g55213.t1",{"$nulls":10},"gi|302800291|ref|XP_002981903.1|",{"$nulls":4},{"v":7.91846979547998,"d":"7.92"},{"v":6.3348712356994,"d":"6.33"},{"v":3.1821306164324,"d":"3.18"},{"v":3.9453613565818,"d":"3.95"}]
["g55214.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.45042772897923,"d":"0.45"},{"v":0.226586122666741,"d":"0.23"},"X",null,"X"]
["g55215.t1",{"$nulls":15},{"v":0.364970658489239,"d":"0.36"},{"v":3.86820999917835,"d":"3.87"},{"v":9.97881593143469,"d":"9.98"},{"v":0.92720846441026,"d":"0.93"}]
["g2646.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.94559897972162,"d":"0.95"},{"v":0,"d":"0.00"}]
["g2647.t1",{"$nulls":10},"gi|658032340|ref|XP_008351676.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0876693114599002,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g2648.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0895126194600633,"d":"0.09"},{"v":0.168604181142106,"d":"0.17"},"X",null,"X"]
["g2649.t1"]
["g2650.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.060636411710724,"d":"0.06"},{"v":0.304123574937396,"d":"0.30"},{"v":0,"d":"0.00"}]
["g2651.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.024487620787563,"d":"0.02"},{"v":0.240555423085135,"d":"0.24"},{"v":0,"d":"0.00"}]
["g2652.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.142543592149349,"d":"0.14"},{"v":0.400849831909363,"d":"0.40"},{"v":0,"d":"0.00"}]
["g2653.t1",{"$nulls":6},"ARATHwo_AT1G67120.1","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|727651886|ref|XP_010496662.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.109409968002017,"d":"0.11"},{"v":0.163318222374029,"d":"0.16"},{"v":0,"d":"0.00"},null,"X"]
["g2654.t1",null,5488,16020,null,"binding","membrane",{"$nulls":4},"gi|923854260|ref|XP_013704502.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.412366521022353,"d":"0.41"},{"v":2.45400688179625,"d":"2.45"},{"v":0.438258453054341,"d":"0.44"},null,"X"]
["g2655.t1",{"$nulls":10},"gi|731333456|ref|XP_010677744.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0403102424861463,"d":"0.04"},{"v":0.252389286966533,"d":"0.25"},{"v":0,"d":"0.00"},"X"]
["g2656.t1",{"$nulls":15},{"v":0.242269497693241,"d":"0.24"},{"v":0,"d":"0.00"},{"v":0.975257145194296,"d":"0.98"},{"v":0.453232854230963,"d":"0.45"},"X",null,"X"]
["g2657.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P03360|POL_AVIRE","Pol polyprotein","gi|702353503|ref|XP_010058228.1|",{"$nulls":4},{"v":0.026463185654247198,"d":"0.03"},{"v":0.177280542373717,"d":"0.18"},{"v":1.70633054671583,"d":"1.71"},{"v":0.463267013119019,"d":"0.46"},"X"]
["g2658.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.595602858795989,"d":"0.60"},{"v":4.44530418505168,"d":"4.45"},{"v":1.47778710642503,"d":"1.48"},"X",null,"X"]
["g2659.t1",null,null,16020,null,null,"membrane",null,null,"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|374081772|dbj|BAL46523.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.110861288054282,"d":"0.11"},{"v":0.797866968261697,"d":"0.80"},{"v":0.336505828165974,"d":"0.34"},"X"]
["g2660.t1",null,5488,16020,null,"binding","membrane",null,null,"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|657997735|ref|XP_008391257.1|",{"$nulls":4},{"v":0.0282378685346502,"d":"0.03"},{"v":0.112045890712036,"d":"0.11"},{"v":0.598305745781657,"d":"0.60"},{"v":0.251726591097837,"d":"0.25"},null,"X"]
["g2661.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|861626169|gb|KMQ88727.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0659813155637853,"d":"0.07"},{"v":0.994667670683659,"d":"0.99"},{"v":0.141986792535738,"d":"0.14"},"X"]
["g2662.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.145140152809133,"d":"0.15"},{"v":1.5269214674459,"d":"1.53"},{"v":0.390762824261653,"d":"0.39"},null,"X"]
["g2663.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|659121350|ref|XP_008460615.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.115067052122719,"d":"0.12"},{"v":2.09679072067408,"d":"2.10"},{"v":0.761262736023496,"d":"0.76"},"X"]
["g2664.t1",{"$nulls":8},"sp|P46504|YLX8_CAEEL","Uncharacterized protein F23F12.8",{"$nulls":5},{"v":0.0209630802058937,"d":"0.02"},{"v":0.0334385854821057,"d":"0.03"},{"v":1.78843106830508,"d":"1.79"},{"v":0.255015669624101,"d":"0.26"}]
["g2665.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":5},"gi|34015295|gb|AAQ56486.1|",{"$nulls":4},{"v":0.0552354442700858,"d":"0.06"},{"v":0.216539936024979,"d":"0.22"},{"v":1.57872948464247,"d":"1.58"},{"v":0.618659106310891,"d":"0.62"},"X"]
["g2666.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":5},"gi|685323672|ref|XP_009151506.1|",{"$nulls":4},{"v":0.0340387707543001,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.697350688368396,"d":"0.70"},{"v":0,"d":"0.00"},"X"]
["g2667.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0380409340104333,"d":"0.04"},{"v":0.0709515889678917,"d":"0.07"},{"v":0.165568371786362,"d":"0.17"}]
["g2668.t1",{"$nulls":10},"gi|762144908|ref|XP_011455724.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.473156728446745,"d":"0.47"},{"v":0,"d":"0.00"}]
["g2669.t1",{"$nulls":10},"gi|156396412|ref|XP_001637387.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.239789945013172,"d":"0.24"},{"v":0.188634421310392,"d":"0.19"}]
["g2670.t1",{"$nulls":15},{"v":0.446237692582355,"d":"0.45"},{"v":2.91201887031441,"d":"2.91"},{"v":10.5335007486277,"d":"10.53"},{"v":1.46844931029837,"d":"1.47"}]
["g2671.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":4},{"v":0.106060411936259,"d":"0.11"},{"v":0.469384792553714,"d":"0.47"},{"v":1.53852048654841,"d":"1.54"},{"v":0.142778706304004,"d":"0.14"},null,"X"]
["g2672.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.326978687536182,"d":"0.33"},{"v":1.27809987758628,"d":"1.28"},{"v":0.195884040636575,"d":"0.20"},"X",null,"X"]
["g2673.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0.0362505102284773,"d":"0.04"},{"v":0.179876286929651,"d":"0.18"},{"v":0.718067497049663,"d":"0.72"},{"v":0.101096350741512,"d":"0.10"},"X"]
["g2674.t1",{"$nulls":8},"sp|Q09575|YRD6_CAEEL","Uncharacterized protein K02A2.6","gi|727651886|ref|XP_010496662.1|",{"$nulls":4},{"v":0.0284554683572521,"d":"0.03"},{"v":0.302420516630593,"d":"0.30"},{"v":1.95055830515872,"d":"1.95"},{"v":0.108549844334058,"d":"0.11"},null,"X"]
["g2675.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|657997735|ref|XP_008391257.1|",{"$nulls":9},"X"]
["g2676.t1",{"$nulls":15},{"v":0.321714615036563,"d":"0.32"},{"v":0.164462440266414,"d":"0.16"},{"v":3.57743986155891,"d":"3.58"},{"v":0.292814080868109,"d":"0.29"}]
["g2677.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.542298208527221,"d":"0.54"},{"v":1.45359284464755,"d":"1.45"},{"v":0.31447977961356,"d":"0.31"}]
["g2678.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.140209675314943,"d":"0.14"},{"v":0.693713797134623,"d":"0.69"},{"v":0.11968740492888,"d":"0.12"},"X",null,"X"]
["g2679.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":0.0622803264876855,"d":"0.06"},{"v":0.351297923938135,"d":"0.35"},{"v":1.88030731083767,"d":"1.88"},{"v":0.336328411409331,"d":"0.34"},"X"]
["g2680.t1",{"$nulls":15},{"v":0.918611369543383,"d":"0.92"},{"v":0.195345670908934,"d":"0.20"},{"v":1.18181392207398,"d":"1.18"},{"v":0,"d":"0.00"}]
["g2681.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|O92956|POL_RSVSB","Gag-Pro-Pol polyprotein","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0.0191751416227216,"d":"0.02"},{"v":0.0110828089965086,"d":"0.01"},{"v":0.491972980856053,"d":"0.49"},{"v":0,"d":"0.00"},null,"X"]
["g2682.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|675201873|ref|XP_008909821.1|",{"$nulls":4},{"v":0.0105075711721893,"d":"0.01"},{"v":0.119753613793865,"d":"0.12"},{"v":0.959349817463439,"d":"0.96"},{"v":0.0439664340560685,"d":"0.04"},null,"X"]
["g2683.t1",{"$nulls":15},{"v":0.348587788489094,"d":"0.35"},{"v":0.113588075318553,"d":"0.11"},{"v":0.381351895391038,"d":"0.38"},{"v":0,"d":"0.00"}]
["g2684.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|729440474|ref|XP_010521432.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0116067667378785,"d":"0.01"},{"v":0.474827761263005,"d":"0.47"},{"v":0.0270351469767956,"d":"0.03"},null,"X"]
["g2685.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.037797516004875,"d":"0.04"},{"v":0.0665623952952565,"d":"0.07"},{"v":0.0701527960268507,"d":"0.07"}]
["g2686.t1",{"$nulls":8},"sp|B4YNE6|V6_SPTNK","Collagen-like protein V6",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.0523918682280323,"d":"0.05"},{"v":0.0977581165813563,"d":"0.10"},{"v":0,"d":"0.00"}]
["g2687.t1",{"$nulls":10},"gi|568440035|ref|XP_006455814.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0871079799662657,"d":"0.09"},{"v":0.133883804997715,"d":"0.13"},{"v":0,"d":"0.00"},"X"]
["g2688.t1",{"$nulls":20},"X","X"]
["g2689.t1",{"$nulls":6},"ARATHwo_AT4G15880.1","EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.","sp|O42957|ULP1_SCHPO","Ubiquitin-like-specific protease 1","gi|755873748|ref|XP_011292327.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.245366970765115,"d":"0.25"},{"v":1.17070494410901,"d":"1.17"},{"v":0,"d":"0.00"}]
["g2690.t1",6259,null,null,"DNA metabolic process",{"$nulls":6},"gi|4432807|gb|AAD20658.1|",null,null,"x","x",{"v":3.22870809121559,"d":"3.23"},{"v":3.45361879462644,"d":"3.45"},{"v":3.0397875073575,"d":"3.04"},{"v":0.417069002306096,"d":"0.42"}]
["g2691.t1",{"$nulls":15},{"v":0.406892032932137,"d":"0.41"},{"v":0.21408019221321,"d":"0.21"},{"v":0.99476484603368,"d":"0.99"},{"v":0,"d":"0.00"},"X",null,"X"]
["g2692.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0.0535640821119258,"d":"0.05"},{"v":0.0758645897506927,"d":"0.08"},{"v":0.458854171426573,"d":"0.46"},{"v":0.0786778833995037,"d":"0.08"},"X"]
["g2693.t1",{"$nulls":10},"gi|917737494|ref|WP_052251680.1|",{"$nulls":4},{"v":11.2568918581858,"d":"11.26"},{"v":9.32170988115148,"d":"9.32"},{"v":6.62844970088837,"d":"6.63"},{"v":1.47258765214681,"d":"1.47"}]
["g2694.t1",{"$nulls":15},{"v":11.0343465645471,"d":"11.03"},{"v":12.7526772495463,"d":"12.75"},{"v":6.85121514173055,"d":"6.85"},{"v":0.864140024873919,"d":"0.86"}]
["g2695.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0214612170476411,"d":"0.02"},{"v":0.168559171219625,"d":"0.17"},{"v":0,"d":"0.00"},"X"]
["g2696.t1"]
["g2697.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g2698.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g2699.t1",{"$nulls":6},"ARATHwo_AT4G31520.1","SDA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G13160.1); Has 8756 Blast hits to 5682 proteins in 453 species: Archae - 14; Bacteria - 613; Metazoa - 3270; Fungi - 1126; Plants - 516; Viruses - 196; Other Eukaryotes - 3021 (source: NCBI BLink).",{"$nulls":7},{"v":0.021082766267633,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.305943368914956,"d":"0.31"},{"v":0,"d":"0.00"}]
["g2700.t1",{"$nulls":8},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.077996759442595,"d":"0.08"},{"v":0.734681203324082,"d":"0.73"},{"v":0.0746299925091015,"d":"0.07"},"X"]
["g2701.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|590613116|ref|XP_007022574.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0663267716052612,"d":"0.07"},{"v":0,"d":"0.00"},null,"X"]
["g2702.t1",{"$nulls":8},"sp|D4ATM6|A7590_ARTBC","Uncharacterized secreted protein ARB_07590","gi|582957989|gb|EWC46201.1|",null,"x",null,"x",{"v":22.8027484748141,"d":"22.80"},{"v":34.4660124294038,"d":"34.47"},{"v":167.084063240346,"d":"167.08"},{"v":4.59662197152876,"d":"4.60"}]
["g2703.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.150930236039807,"d":"0.15"},{"v":0.315094609546962,"d":"0.32"},{"v":0,"d":"0.00"},"X"]
["g2704.t1",{"$nulls":15},{"v":0.279269632024526,"d":"0.28"},{"v":0.788869133791165,"d":"0.79"},{"v":3.91039895482227,"d":"3.91"},{"v":0.464238695495074,"d":"0.46"},"X",null,"X"]
["g2705.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P05400|POL_CERV","Enzymatic polyprotein","gi|374081772|dbj|BAL46523.1|",{"$nulls":4},{"v":0.279917660355138,"d":"0.28"},{"v":1.55278115308955,"d":"1.55"},{"v":15.1903013306453,"d":"15.19"},{"v":2.35731652681649,"d":"2.36"},null,"X"]
["g2706.t1"]
["g2707.t1"]
["g2708.t1"]
["g2709.t1",{"$nulls":8},"sp|D4ATM6|A7590_ARTBC","Uncharacterized secreted protein ARB_07590","gi|628053743|ref|XP_007694210.1|",null,"x","x","x",{"v":50.975729798499,"d":"50.98"},{"v":143.839509945257,"d":"143.84"},{"v":175.825901248326,"d":"175.83"},{"v":22.8398136375539,"d":"22.84"}]
["g2710.t1",null,5488,null,null,"binding",null,"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|242036183|ref|XP_002465486.1|"]
["g2711.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|595484032|gb|EXX71174.1|",{"$nulls":8},"X"]
["g2712.t1"]
["g2713.t1"]
["g2714.t1"]
["g2715.t1",{"$nulls":19},"X",null,"X"]
["g2716.t1",{"$nulls":6},"ARATHwo_AT4G09630.1","Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G34550.1); Has 3181 Blast hits to 2512 proteins in 288 species: Archae - 26; Bacteria - 157; Metazoa - 687; Fungi - 206; Plants - 314; Viruses - 69; Other Eukaryotes - 1722 (source: NCBI BLink).",null,null,"gi|658032340|ref|XP_008351676.1|",{"$nulls":4},{"v":0.0459395364702262,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},null,"X"]
["g2717.t1",{"$nulls":10},"gi|582957989|gb|EWC46201.1|",null,"x","x","x",{"v":101.793060027335,"d":"101.79"},{"v":111.295613922321,"d":"111.30"},{"v":113.563284769817,"d":"113.56"},{"v":5.45757780875857,"d":"5.46"}]
["g2718.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":5},"gi|595441411|gb|EXX53826.1|",{"$nulls":8},"X"]
["g2719.t1",{"$nulls":8},"sp|D4AV98|A0107_ARTBC","Uncharacterized secreted protein ARB_00107","gi|582957989|gb|EWC46201.1|",null,"x","x","x",{"v":172.968453868383,"d":"172.97"},{"v":211.362158635704,"d":"211.36"},{"v":273.689857636843,"d":"273.69"},{"v":31.7090681880349,"d":"31.71"}]
["g2720.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.0660481122860513,"d":"0.07"},{"v":0.247107822658257,"d":"0.25"},{"v":1.37284470278146,"d":"1.37"},{"v":0.666548019060033,"d":"0.67"},"X"]
["g2721.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|729324366|ref|XP_010534478.1|",{"$nulls":8},"X"]
["g2722.t1",{"$nulls":6},"ARATHwo_AT2G33550.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3",null,"x"]
["g2723.t1",{"$nulls":8},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|4544430|gb|AAD22339.1|",{"$nulls":4},{"v":1.00095159748923,"d":"1.00"},{"v":2.35339360974918,"d":"2.35"},{"v":0.708922655017543,"d":"0.71"},{"v":9.75045227164892,"d":"9.75"},null,"X"]
["g2724.t1",{"$nulls":10},"gi|576042406|ref|XP_006695076.1|",null,"x","x","x",{"v":229.85367380545,"d":"229.85"},{"v":60.9941227345288,"d":"60.99"},{"v":157.021672981883,"d":"157.02"},{"v":7.89321205426363,"d":"7.89"}]
["g2725.t1",{"$nulls":8},"sp|D4AV98|A0107_ARTBC","Uncharacterized secreted protein ARB_00107","gi|303324279|ref|XP_003072127.1|",null,"x",null,"x",{"v":152.21498174608,"d":"152.21"},{"v":10.8404328537153,"d":"10.84"},{"v":28.4764415264206,"d":"28.48"},{"v":1.10092837706938,"d":"1.10"}]
["g2726.t1",{"$nulls":8},"sp|D4ATM6|A7590_ARTBC","Uncharacterized secreted protein ARB_07590","gi|169594696|ref|XP_001790772.1|",{"$nulls":4},{"v":15.1715310209702,"d":"15.17"},{"v":3.44466297001416,"d":"3.44"},{"v":18.7293911043896,"d":"18.73"},{"v":0.536352121610744,"d":"0.54"}]
["g2727.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0655936129449577,"d":"0.07"},{"v":0.0640572770233663,"d":"0.06"},{"v":0.0905752195769163,"d":"0.09"}]
["g2728.t1"]
["g55216.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.081985505969249,"d":"0.08"},{"v":0.407824705815883,"d":"0.41"},{"v":0,"d":"0.00"},null,"X","X"]
["g55217.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|576047805|tpd|FAA01117.1|"]
["g55218.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.17286990281478,"d":"0.17"},{"v":0,"d":"0.00"},"X",null,"X"]
["g55219.t1",{"$nulls":10},"gi|71148686|gb|AAZ28939.1|",{"$nulls":4},{"v":24.5804713320954,"d":"24.58"},{"v":4.27077527878654,"d":"4.27"},{"v":10.9417696369365,"d":"10.94"},{"v":7.84225449245749,"d":"7.84"},null,"X"]
["g55220.t1",{"$nulls":15},{"v":2.12703445364257,"d":"2.13"},{"v":1.01312409349789,"d":"1.01"},{"v":0.687587236002025,"d":"0.69"},{"v":0.926885272819777,"d":"0.93"}]
["g55221.t1",{"$nulls":10},"gi|585691484|ref|XP_002738601.2|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.126767740023876,"d":"0.13"},{"v":0,"d":"0.00"}]
["g55222.t1"]
["g55223.t1",{"$nulls":19},"X",null,"X"]
["g55224.t1",{"$nulls":20},"X","X"]
["g55225.t1",{"$nulls":10},"gi|546301773|ref|XP_005711507.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.149637102040009,"d":"0.15"},{"v":0.116494856050156,"d":"0.12"},"X"]
["g55226.t1","0006810:0044260:0051716:0007154:0044700:0044238:0050789","0016301:0000166",null,"transport:cellular macromolecule metabolic process:cellular response to stimulus:cell communication:single organism signaling:primary metabolic process:regulation of biological process","kinase activity:nucleotide binding",null,"ARATHwo_AT1G23540.1","Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.","sp|Q9ZUE0|PEK12_ARATH","Proline-rich receptor-like protein kinase PERK12","gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":4.83376352207244,"d":"4.83"},{"v":3.75807261282625,"d":"3.76"},{"v":1.91191296007518,"d":"1.91"},{"v":1.25101516457827,"d":"1.25"}]
["g55227.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|255542285|ref|XP_002512206.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0407084886714627,"d":"0.04"},{"v":0.244992032491159,"d":"0.24"},{"v":0,"d":"0.00"},null,"X"]
["g80594.t1",{"$nulls":10},"gi|918033265|ref|WP_052321516.1|"]
["g55228.t1",null,3824,null,null,"catalytic activity",{"$nulls":3},"sp|Q46267|PFLA_CLOPA","Pyruvate formate-lyase-activating enzyme","gi|873238753|emb|CEL95532.1|",null,null,"x","x",{"v":6.48718751571571,"d":"6.49"},{"v":3.39313766591826,"d":"3.39"},{"v":3.0787346349457,"d":"3.08"},{"v":6.74790549572623,"d":"6.75"}]
["g55229.t1",{"$nulls":6},"ARATHwo_AT5G52340.1","A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.","sp|Q9LZD3|E70A1_ARATH","Exocyst complex component EXO70A1","gi|567906919|ref|XP_006445773.1|",null,null,"x","x",{"v":9.82172699958779,"d":"9.82"},{"v":9.07193950771459,"d":"9.07"},{"v":5.24919710041955,"d":"5.25"},{"v":5.72292797154646,"d":"5.72"}]
["g55230.t1",6412,3735,5840,"translation","structural constituent of ribosome","ribosome","ARATHwo_AT2G42740.1","encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.","sp|Q0DK10|RL11_ORYSJ","60S ribosomal protein L11","gi|168015331|ref|XP_001760204.1|",null,"x","x","x",{"v":1651.46468154524,"d":"1651.46"},{"v":267.009157366502,"d":"267.01"},{"v":141.294688145129,"d":"141.29"},{"v":279.598123478942,"d":"279.60"}]
["g80605.t1",{"$nulls":8},"sp|Q9UR07|TF211_SCHPO","Transposon Tf2-11 polyprotein","gi|661175528|emb|CDH61236.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0940669703309777,"d":"0.09"},{"v":0.453620768202049,"d":"0.45"},{"v":0.306176010285368,"d":"0.31"},"X"]
["g55231.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.105700065489802,"d":"0.11"},{"v":0,"d":"0.00"},"X",null,"X"]
["g55232.t1"]
["g55233.t1",{"$nulls":6},"ARATHwo_AT1G45150.1","unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).","sp|Q8RIK9|SYC_FUSNN","Cysteine--tRNA ligase","gi|659133174|ref|XP_008466593.1|",{"$nulls":4},{"v":6.29838468282359,"d":"6.30"},{"v":4.88481360437991,"d":"4.88"},{"v":6.68253443853313,"d":"6.68"},{"v":4.59301398380798,"d":"4.59"}]
["g55234.t1","0007018:0008152","0003777:0008017:0005524","0005874:0005871","microtubule-based movement:metabolic process","microtubule motor activity:microtubule binding:ATP binding","microtubule:kinesin complex","ARATHwo_AT3G63480.1","ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q54UC9|KIF3_DICDI","Kinesin-related protein 3","gi|330796538|ref|XP_003286323.1|",null,null,"x","x",{"v":0.64322793768808,"d":"0.64"},{"v":0.153728579418346,"d":"0.15"},{"v":0.0763139099242337,"d":"0.08"},{"v":2.0487438395064,"d":"2.05"}]
["g55235.t1",44765,"0016887:0005215",null,"single-organism transport","ATPase activity:transporter activity",null,"ARATHwo_AT4G25450.1","member of NAP subfamily","sp|Q8LPQ6|AB28B_ARATH","ABC transporter B family member 28","gi|168046244|ref|XP_001775584.1|",null,null,"x","x",{"v":8.967989071103,"d":"8.97"},{"v":3.75192903699469,"d":"3.75"},{"v":3.47603898375663,"d":"3.48"},{"v":1.00453913147664,"d":"1.00"}]
["g55236.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).","sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab","gi|521961519|ref|WP_020473124.1|",{"$nulls":4},{"v":1.18499912055864,"d":"1.18"},{"v":1.95011534373275,"d":"1.95"},{"v":0.607662220993024,"d":"0.61"},{"v":1.06480600473644,"d":"1.06"}]
["g55237.t1",{"$nulls":13},"x","x",{"v":4.95814306553408,"d":"4.96"},{"v":5.59515973966129,"d":"5.60"},{"v":6.85018765830664,"d":"6.85"},{"v":3.98827710678477,"d":"3.99"}]
["g55238.t1","0055114:0019288:0016117","0016705:0009055:0004497:0020037:0005506","0009570:0031969","oxidation-reduction process:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:carotenoid biosynthetic process","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen:electron carrier activity:monooxygenase activity:heme binding:iron ion binding","chloroplast stroma:chloroplast membrane","ARATHwo_AT4G15110.1","member of CYP97B","sp|O48921|C97B2_SOYBN","Cytochrome P450 97B2, chloroplastic","gi|168034105|ref|XP_001769554.1|",null,null,"x","x",{"v":1.39541797231649,"d":"1.40"},{"v":0.912501408451112,"d":"0.91"},{"v":0.887773384431006,"d":"0.89"},{"v":0.781191870751882,"d":"0.78"}]
["g55239.t1",{"$nulls":20},"X","X"]
["g55240.t1","0006783:0009165:0009116:0016310","0005524:0000287:0016301:0004749",9507,"heme biosynthetic process:nucleotide biosynthetic process:nucleoside metabolic process:phosphorylation","ATP binding:magnesium ion binding:kinase activity:ribose phosphate diphosphokinase activity","chloroplast","ARATHwo_AT1G10700.1","Encodes a P-independent phosphoribosyl pyrophosphate (PRPP) synthase.","sp|Q8S2E5|KPRS3_ORYSJ","Ribose-phosphate pyrophosphokinase 3, chloroplastic","gi|719984565|ref|XP_010251113.1|",null,null,"x","x",{"v":1.1241795328383,"d":"1.12"},{"v":1.61640081999815,"d":"1.62"},{"v":0.276646632149544,"d":"0.28"},{"v":0.581996040891394,"d":"0.58"}]
["g55241.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink)."]
["g55242.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.105643915077746,"d":"0.11"},{"v":0,"d":"0.00"},null,"X","X"]
["g55243.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|926522839|ref|XP_013810575.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0475172891542607,"d":"0.05"},{"v":0.0525793797035117,"d":"0.05"},{"v":0,"d":"0.00"},"X"]
["g55244.t1",{"$nulls":13},"x","x",{"v":0.323540191378016,"d":"0.32"},{"v":5.35586115430925,"d":"5.36"},{"v":7.19562028492892,"d":"7.20"},{"v":6.34844687313332,"d":"6.35"}]
["g55245.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|743821526|ref|XP_011021446.1|",{"$nulls":4},{"v":1.32407327790267,"d":"1.32"},{"v":9.26727653576767,"d":"9.27"},{"v":12.734701262587,"d":"12.73"},{"v":8.5914381491426,"d":"8.59"}]
["g55246.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.076788792581935,"d":"0.08"},{"v":0,"d":"0.00"}]
["g55247.t1","0000024:0005983",16161,9570,"maltose biosynthetic process:starch catabolic process","beta-amylase activity","chloroplast stroma","ARATHwo_AT4G17090.1","Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).","sp|O23553|BAM3_ARATH","Beta-amylase 3, chloroplastic","gi|168051413|ref|XP_001778149.1|",null,null,"x","x",{"v":4.0400870025354,"d":"4.04"},{"v":15.0289093961073,"d":"15.03"},{"v":28.0170541849967,"d":"28.02"},{"v":7.59469721064693,"d":"7.59"}]
["g80638.t1",{"$nulls":15},{"v":19.1567086193576,"d":"19.16"},{"v":2.08554001504053,"d":"2.09"},{"v":2.79588852487981,"d":"2.80"},{"v":0,"d":"0.00"}]
["g55275.t1"]
["g55276.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.24731741925363,"d":"0.25"},{"v":0,"d":"0.00"},null,"X"]
["g55277.t1",null,5488,null,null,"binding",null,"ARATHwo_AT3G13030.1","hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.308128160605193,"d":"0.31"},{"v":0,"d":"0.00"},"X"]
["g55278.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|Q8K259|GIN1_MOUSE","Gypsy retrotransposon integrase-like protein 1","gi|14716946|emb|CAC44142.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0383259420729643,"d":"0.04"},{"v":0.26426594873384,"d":"0.26"},{"v":0,"d":"0.00"},"X"]
["g3345.t1",{"$nulls":10},"gi|752340007|gb|KIN99114.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.476174381143004,"d":"0.48"},{"v":2.17972730262908,"d":"2.18"},{"v":0.18944183114274,"d":"0.19"},"X"]
["g3346.t1","0044238:0043170",null,null,"primary metabolic process:macromolecule metabolic process",{"$nulls":6},"gi|645025511|ref|XP_008218023.1|",{"$nulls":4},{"v":0.0242875014304144,"d":"0.02"},{"v":0.116255244948349,"d":"0.12"},{"v":1.18824223725165,"d":"1.19"},{"v":0.286368275604349,"d":"0.29"},"X"]
["g3347.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.390624559058521,"d":"0.39"},{"v":1.42084180696127,"d":"1.42"},{"v":0.54020039935858,"d":"0.54"}]
["g3348.t1",{"$nulls":15},{"v":0.127846551037621,"d":"0.13"},{"v":0.437569982196417,"d":"0.44"},{"v":2.3034047416295,"d":"2.30"},{"v":0.882686936777445,"d":"0.88"},"X",null,"X"]
["g3349.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P0C211|POL_HTL1L","Gag-Pro-Pol polyprotein","gi|657948755|ref|XP_008339280.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0664781145410794,"d":"0.07"},{"v":0.220016130568592,"d":"0.22"},{"v":0.183969307936379,"d":"0.18"},"X"]
["g3350.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0376697413832617,"d":"0.04"},{"v":0.887963695923161,"d":"0.89"},{"v":0,"d":"0.00"},"X"]
["g3351.t1",{"$nulls":15},{"v":2.71202180277516,"d":"2.71"},{"v":4.32875711569488,"d":"4.33"},{"v":4.75024886078548,"d":"4.75"},{"v":0.614131153338919,"d":"0.61"},null,"X","X"]
["g3352.t1","0043170:0044238","0005488:0003824",null,"macromolecule metabolic process:primary metabolic process","binding:catalytic activity",{"$nulls":5},"gi|861608443|gb|KMQ84823.1|",{"$nulls":4},{"v":0.807196330736237,"d":"0.81"},{"v":1.2586379894091,"d":"1.26"},{"v":4.43011474601298,"d":"4.43"},{"v":1.17570697677836,"d":"1.18"},"X"]
["g3353.t1",{"$nulls":8},"sp|P10401|POLY_DROME","Retrovirus-related Pol polyprotein from transposon gypsy","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.645707999413558,"d":"0.65"},{"v":3.29633323608409,"d":"3.30"},{"v":2.46386866791907,"d":"2.46"},"X"]
["g3354.t1",{"$nulls":15},{"v":0.432752890762895,"d":"0.43"},{"v":0.656102324676843,"d":"0.66"},{"v":3.39497506182458,"d":"3.39"},{"v":0.379638072484663,"d":"0.38"},"X",null,"X"]
["g3355.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a"]
["g3356.t1"]
["g3357.t1"]
["g3358.t1",{"$nulls":8},"sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.092426735121378,"d":"0.09"},{"v":0,"d":"0.00"}]
["g3359.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.10159706067417,"d":"0.10"},{"v":0.29920327867128,"d":"0.30"},{"v":0,"d":"0.00"},"X",null,"X"]
["g3360.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.052307338464166,"d":"0.05"},{"v":0.115836668379112,"d":"0.12"},{"v":0,"d":"0.00"},"X",null,"X"]
["g3361.t1",{"$nulls":8},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|568882001|ref|XP_006493831.1|",{"$nulls":4},{"v":0.0623550012366342,"d":"0.06"},{"v":0.425170880973848,"d":"0.43"},{"v":3.62652346471519,"d":"3.63"},{"v":0.678920708105851,"d":"0.68"},null,"X"]
["g3362.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.321585939692558,"d":"0.32"},{"v":0,"d":"0.00"}]
["g3363.t1",{"$nulls":8},"sp|P63132|PO113_HUMAN","Endogenous retrovirus group K member 113 Pol protein","gi|727650546|ref|XP_010495970.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.115353816098612,"d":"0.12"},{"v":0.582420074790124,"d":"0.58"},{"v":0,"d":"0.00"},null,"X"]
["g3364.t1"]
["g3365.t1",{"$nulls":8},"sp|Q5EAD8|LRC51_BOVIN","Leucine-rich repeat-containing protein 51","gi|302830760|ref|XP_002946946.1|",null,null,"x","x",{"v":0.703543389822398,"d":"0.70"},{"v":4.48201026838093,"d":"4.48"},{"v":37.5383036389873,"d":"37.54"},{"v":3.02503691764295,"d":"3.03"}]
["g3366.t1","0043170:0044238",46872,16020,"macromolecule metabolic process:primary metabolic process","metal ion binding","membrane","ARATHwo_AT5G48940.1","Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":0.178678533820758,"d":"0.18"},{"v":2.80875673321471,"d":"2.81"},{"v":2.24519618530757,"d":"2.25"},{"v":1.18217142148673,"d":"1.18"},null,"X"]
["g3367.t1"]
["g3368.t1"]
["g3369.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.158272681310326,"d":"0.16"},{"v":0.147898305406298,"d":"0.15"},{"v":0,"d":"0.00"},"X",null,"X"]
["g3370.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.351752804550358,"d":"0.35"},{"v":0,"d":"0.00"}]
["g3371.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.04745288952535,"d":"0.05"},{"v":0.383165102207804,"d":"0.38"},{"v":0.088147324450466,"d":"0.09"},null,"X"]
["g3372.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|749720783|gb|KII68202.1|",{"$nulls":9},"X"]
["g3373.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|861612721|gb|KMQ85528.1|",{"$nulls":4},{"v":0.0601694594482364,"d":"0.06"},{"v":0.0753170998279827,"d":"0.08"},{"v":0.432852723257657,"d":"0.43"},{"v":0.177644833894535,"d":"0.18"},null,"X"]
["g3374.t1",{"$nulls":8},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.186194959203981,"d":"0.19"},{"v":0.599713963084586,"d":"0.60"},{"v":0,"d":"0.00"},"X"]
["g3375.t1",{"$nulls":10},"gi|571540564|ref|XP_006601526.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.314317551236746,"d":"0.31"},{"v":0.0568746494111923,"d":"0.06"},"X"]
["g3376.t1",44765,16462,null,"single-organism transport","pyrophosphatase activity",{"$nulls":5},"gi|672203510|ref|XP_008778666.1|",null,null,"x","x",{"v":5.68367739258868,"d":"5.68"},{"v":12.0876327807933,"d":"12.09"},{"v":15.910493564639,"d":"15.91"},{"v":20.0973853325014,"d":"20.10"}]
["g3376.t2","0055085:0015992:0008152","0046872:0009678:0004427","0000139:0005768:0005886:0005774:0016021:0005802","transmembrane transport:proton transport:metabolic process","metal ion binding:hydrogen-translocating pyrophosphatase activity:inorganic diphosphatase activity","Golgi membrane:endosome:plasma membrane:vacuolar membrane:integral to membrane:trans-Golgi network","ARATHwo_AT1G16780.1","Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.","sp|Q9FWR2|AVPX_ARATH","Pyrophosphate-energized membrane proton pump 3","gi|727507229|ref|XP_010429757.1|",null,null,"x","x",{"v":5.68367739258868,"d":"5.68"},{"v":12.0876327807933,"d":"12.09"},{"v":15.910493564639,"d":"15.91"},{"v":20.0973853325014,"d":"20.10"}]
["g3377.t1",{"$nulls":15},{"v":0.315932847431053,"d":"0.32"},{"v":0.146666441449609,"d":"0.15"},{"v":1.42961250678999,"d":"1.43"},{"v":0.192750252436233,"d":"0.19"}]
["g3378.t1",null,5488,16020,null,"binding","membrane",null,null,"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|657997735|ref|XP_008391257.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.247117182153622,"d":"0.25"},{"v":0.973270293516347,"d":"0.97"},{"v":0.05580102461437,"d":"0.06"},"X"]
["g3379.t1",{"$nulls":10},"gi|646722767|gb|KDR23651.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.915656449132555,"d":"0.92"},{"v":2.74932779708936,"d":"2.75"},{"v":0.232375052959916,"d":"0.23"},"X"]
["g3380.t1",{"$nulls":15},{"v":0.726940974896148,"d":"0.73"},{"v":0.567081986475391,"d":"0.57"},{"v":2.46123830323866,"d":"2.46"},{"v":0.569876361766411,"d":"0.57"},null,"X","X"]
["g3381.t1",{"$nulls":6},"ARATHwo_AT1G78920.1","Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|108863002|gb|ABA99486.2|",{"$nulls":9},"X"]
["g3382.t1",{"$nulls":6},"ARATHwo_AT3G13030.1","hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|731394054|ref|XP_010651704.1|",{"$nulls":4},{"v":0.0722590495671917,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0.209569046483814,"d":"0.21"},{"v":0,"d":"0.00"}]
["g3383.t1",{"$nulls":6},"ARATHwo_AT2G33550.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3"]
["g3384.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|294461638|gb|ADE76379.1|",{"$nulls":9},"X"]
["g3385.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|902169579|gb|KNA07679.1|"]
["g3386.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.19922359571616,"d":"0.20"},{"v":0,"d":"0.00"}]
["g3387.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|685266754|ref|XP_009121394.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.055758764976753,"d":"0.06"},{"v":0,"d":"0.00"}]
["g3388.t1"]
["g3389.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|595959244|ref|XP_007216794.1|"]
["g3390.t1",{"$nulls":10},"gi|678197558|gb|KFV64540.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0521975063397943,"d":"0.05"},{"v":0.121926643014465,"d":"0.12"}]
["g3391.t1",{"$nulls":13},"x","x",{"v":0.543764456874187,"d":"0.54"},{"v":1.40552693436745,"d":"1.41"},{"v":7.92602041668798,"d":"7.93"},{"v":1.3847085385566,"d":"1.38"}]
["g3392.t1"]
["g3393.t1"]
["g3394.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0248434923290534,"d":"0.02"},{"v":0.0879835002182396,"d":"0.09"},{"v":0,"d":"0.00"}]
["g3395.t1","0043170:0044238",3824,null,"macromolecule metabolic process:primary metabolic process","catalytic activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|861620004|gb|KMQ87169.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.166457066877729,"d":"0.17"},{"v":0.911141629778214,"d":"0.91"},{"v":0.188681919573339,"d":"0.19"},"X"]
["g3396.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":5},"gi|32480327|emb|CAE02459.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0636874135949917,"d":"0.06"},{"v":0.10173503604874,"d":"0.10"},{"v":0.063123321916023,"d":"0.06"},"X"]
["g3397.t1",{"$nulls":13},"x","x",{"v":16.5593059090342,"d":"16.56"},{"v":2.71140705044953,"d":"2.71"},{"v":4.5990841207034,"d":"4.60"},{"v":9.69352089299014,"d":"9.69"}]
["g3398.t1"]
["g3399.t1"]
["g3400.t1",null,5488,null,null,"binding",null,"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","sp|P19199|POL_COYMV","Polyprotein P3","gi|147865569|emb|CAN79387.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.160680075415177,"d":"0.16"},{"v":0.505738256309848,"d":"0.51"},{"v":0.112272570002837,"d":"0.11"},null,"X"]
["g3401.t1","0006508:0015074","0046872:0003676:0004190",null,"proteolysis:DNA integration","metal ion binding:nucleic acid binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|857978825|emb|CEO95380.1|",{"$nulls":4},{"v":0.0240589305571809,"d":"0.02"},{"v":0.0556844434011983,"d":"0.06"},{"v":0.921136242821867,"d":"0.92"},{"v":0.100457449739279,"d":"0.10"},"X"]
["g3402.t1",{"$nulls":8},"sp|P27401|POL_SFV3L","Pro-Pol polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0.0813704366621116,"d":"0.08"},{"v":0.850762671846561,"d":"0.85"},{"v":3.46067150797543,"d":"3.46"},{"v":0.735890620298016,"d":"0.74"},"X"]
["g3403.t1",{"$nulls":15},{"v":0.0520210752358746,"d":"0.05"},{"v":0.118628388930046,"d":"0.12"},{"v":0.3561684635995,"d":"0.36"},{"v":0.325463996079915,"d":"0.33"},"X",null,"X"]
["g3404.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":0.247756828604279,"d":"0.25"},{"v":0.230512951652354,"d":"0.23"},{"v":2.6362480852336,"d":"2.64"},{"v":0.170304705931371,"d":"0.17"},"X"]
["g3405.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.160168677865404,"d":"0.16"},{"v":0.537515880792066,"d":"0.54"},{"v":0.0567730376386053,"d":"0.06"},null,"X"]
["g3406.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|189306708|gb|ACD86393.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.234836486127895,"d":"0.23"},{"v":0.987786967090358,"d":"0.99"},{"v":0.136496715583317,"d":"0.14"},null,"X"]
["g3407.t1",null,16787,null,null,"hydrolase activity",null,"ARATHwo_AT1G02310.1","Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","sp|Q0JJD4|MAN2_ORYSJ","Mannan endo-1,4-beta-mannosidase 2","gi|743788854|ref|XP_010922771.1|",{"$nulls":4},{"v":0.049911653467819,"d":"0.05"},{"v":0.061231648464038,"d":"0.06"},{"v":101.112505889909,"d":"101.11"},{"v":0.11387895359394,"d":"0.11"},null,"X"]
["g3408.t1",{"$nulls":10},"gi|694412675|ref|XP_009334644.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0329137926122593,"d":"0.03"},{"v":1.57456136880342,"d":"1.57"},{"v":0,"d":"0.00"},null,"X"]
["g3409.t1",{"$nulls":8},"sp|Q02836|POL_SIVG1","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.114984486037363,"d":"0.11"},{"v":2.00747237171389,"d":"2.01"},{"v":0,"d":"0.00"},"X"]
["g3410.t1",{"$nulls":8},"sp|P24577|YI71_BURM1","Insertion element IS407 uncharacterized 31.7 kDa protein","gi|823127596|ref|XP_012437514.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":2.19032794610978,"d":"2.19"},{"v":0,"d":"0.00"},"X"]
["g3411.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0.02083167948188,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.85768967744134,"d":"0.86"},{"v":0.052029008954068,"d":"0.05"},"X"]
["g3412.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",null,"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|731394682|ref|XP_010651922.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0568561756191593,"d":"0.06"},{"v":1.70404468678287,"d":"1.70"},{"v":0.1190369264727,"d":"0.12"},"X"]
["g3413.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":5.05038788125145,"d":"5.05"},{"v":0,"d":"0.00"},"X",null,"X"]
["g3414.t1",{"$nulls":8},"sp|P78966|MAM1_SCHPO","Mating factor M secretion protein mam1",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.26512292034224,"d":"1.27"},{"v":0.259547937657652,"d":"0.26"},"X"]
["g3415.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3","gi|823240372|ref|XP_012452807.1|","x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.526033624843981,"d":"0.53"},{"v":0,"d":"0.00"}]
["g3416.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.072077964015044,"d":"0.07"},{"v":3.5882033447582,"d":"3.59"},{"v":0.156067473717323,"d":"0.16"},null,"X"]
["g3417.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.57533800203891,"d":"1.58"},{"v":0.184600135207188,"d":"0.18"},"X",null,"X"]
["g3418.t1",{"$nulls":15},{"v":0.10708357854655,"d":"0.11"},{"v":0.228246760035608,"d":"0.23"},{"v":3.87183066727771,"d":"3.87"},{"v":0.262459537412913,"d":"0.26"}]
["g3419.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.10637415074052,"d":"1.11"},{"v":0,"d":"0.00"}]
["g3420.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|780008674|ref|XP_011663462.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0654022031119748,"d":"0.07"},{"v":1.65254928531975,"d":"1.65"},{"v":0.0296843529519839,"d":"0.03"},"X"]
["g3421.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":1.67899102521057,"d":"1.68"},{"v":1.40014369008611,"d":"1.40"},{"v":7.60017654613009,"d":"7.60"},{"v":3.31832446147804,"d":"3.32"},"X"]
["g3422.t1",6468,"0004672:0005524",5886,"protein phosphorylation","protein kinase activity:ATP binding","plasma membrane","ARATHwo_AT5G14720.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G79640.1); Has 122716 Blast hits to 120970 proteins in 3289 species: Archae - 117; Bacteria - 14305; Metazoa - 44836; Fungi - 12007; Plants - 31268; Viruses - 500; Other Eukaryotes - 19683 (source: NCBI BLink).","sp|Q551H4|FRAY2_DICDI","Serine/threonine-protein kinase fray2","gi|719964347|ref|XP_010252413.1|",null,null,"x","x",{"v":7.12456040504923,"d":"7.12"},{"v":3.06502678568158,"d":"3.07"},{"v":3.50455573060614,"d":"3.50"},{"v":6.81416006573445,"d":"6.81"}]
["g3423.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.234337362998906,"d":"0.23"},{"v":3.3509668997441,"d":"3.35"},{"v":0.167532776211693,"d":"0.17"},null,"X"]
["g3424.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":2.13027994068214,"d":"2.13"},{"v":0,"d":"0.00"}]
["g3425.t1",9845,4553,null,"seed germination","hydrolase activity, hydrolyzing O-glycosyl compounds",null,"ARATHwo_AT4G28320.1","Encodes a endo-beta-mannanase involved in seed germination.","sp|Q9M0H6|MAN5_ARATH","Mannan endo-1,4-beta-mannosidase 5","gi|695051635|ref|XP_009413849.1|",{"$nulls":4},{"v":0.242568632222965,"d":"0.24"},{"v":0.459483075564908,"d":"0.46"},{"v":53.6895791377641,"d":"53.69"},{"v":0.119831383503977,"d":"0.12"}]
["g3426.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_AT5G12170.2","Encodes one of the CRT-Like transporters (CLT1/AT5G19380, CLT2/AT4G24460, CLT3/AT5G12170). Required for glutathione homeostasis and stress responses. Mutants lacking these transporters are heavy metal-sensitive, glutathione(GSH)-deficient, and hypersensitive to Phytophthora infection.","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.512910458364063,"d":"0.51"},{"v":1.16515581863213,"d":"1.17"},{"v":2.25283271840085,"d":"2.25"},{"v":1.04262463678144,"d":"1.04"},null,"X"]
["g3427.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.214479293671024,"d":"0.21"},{"v":0.285382305367182,"d":"0.29"},{"v":1.74956708031754,"d":"1.75"},{"v":0.398717352011731,"d":"0.40"},null,"X"]
["g3428.t1",{"$nulls":10},"gi|62954893|gb|AAY23262.1|",{"$nulls":4},{"v":0.0228906633374646,"d":"0.02"},{"v":0.197524299962256,"d":"0.20"},{"v":1.56218632961075,"d":"1.56"},{"v":0.114252123294412,"d":"0.11"},null,"X"]
["g3429.t1",{"$nulls":8},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|727591423|ref|XP_010468773.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0204983094103573,"d":"0.02"},{"v":0.157362505792394,"d":"0.16"},{"v":0.040482269393959,"d":"0.04"},"X"]
["g3430.t1",6278,"0003964:0003723",null,"RNA-dependent DNA replication","RNA-directed DNA polymerase activity:RNA binding",{"$nulls":5},"gi|49256739|emb|CAG34127.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0456337073034787,"d":"0.05"},{"v":1.08562032396314,"d":"1.09"},{"v":0,"d":"0.00"},"X"]
["g3431.t1",{"$nulls":15},{"v":0.0766898363231407,"d":"0.08"},{"v":0,"d":"0.00"},{"v":0.0801330194999733,"d":"0.08"},{"v":0,"d":"0.00"},"X",null,"X"]
["g3432.t1",{"$nulls":8},"sp|P03360|POL_AVIRE","Pol polyprotein","gi|514689314|ref|XP_004992232.1|",{"$nulls":4},{"v":0.0926326933331142,"d":"0.09"},{"v":0.227836766173465,"d":"0.23"},{"v":1.25463989141545,"d":"1.25"},{"v":0.313892452052819,"d":"0.31"},null,"X"]
["g3433.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|923670483|ref|XP_013650503.1|",{"$nulls":4},{"v":0.0510412966713392,"d":"0.05"},{"v":0.308806782603547,"d":"0.31"},{"v":1.86337760835137,"d":"1.86"},{"v":0.548129377926972,"d":"0.55"},"X"]
["g3434.t1",{"$nulls":8},"sp|Q7TNF8|RIMB1_MOUSE","Peripheral-type benzodiazepine receptor-associated protein 1","gi|646722767|gb|KDR23651.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.120844150312718,"d":"0.12"},{"v":0.292561985783338,"d":"0.29"},{"v":0.279176705400997,"d":"0.28"},"X"]
["g3435.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|769794566|ref|XP_011628706.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.108593238139097,"d":"0.11"},{"v":0.588008117753268,"d":"0.59"},{"v":0.128478819439317,"d":"0.13"}]
["g3436.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|731355723|ref|XP_010689289.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.151936472245785,"d":"0.15"},{"v":1.78187361619748,"d":"1.78"},{"v":0.810856316003139,"d":"0.81"},null,"X"]
["g3437.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595885005|ref|XP_007213082.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.168940919849311,"d":"0.17"},{"v":0.626486520407501,"d":"0.63"},{"v":0.107053355211191,"d":"0.11"},"X"]
["g3438.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0908757320552317,"d":"0.09"},{"v":0.183941703852211,"d":"0.18"},{"v":0,"d":"0.00"},"X",null,"X"]
["g3439.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|Q8K259|GIN1_MOUSE","Gypsy retrotransposon integrase-like protein 1","gi|50838937|gb|AAT81698.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.347969231558895,"d":"0.35"},{"v":2.33554746917043,"d":"2.34"},{"v":0.419131995513749,"d":"0.42"},"X"]
["g3440.t1",{"$nulls":8},"sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.634035154140309,"d":"0.63"},{"v":0.316740984577415,"d":"0.32"},"X"]
["g3441.t1",{"$nulls":19},"X",null,"X"]
["g3442.t1",{"$nulls":8},"sp|P10272|POL_BAEVM","Pol polyprotein","gi|923518378|ref|XP_013656989.1|",{"$nulls":4},{"v":0.0266115153639251,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.207752824952803,"d":"0.21"},{"v":0.313644224149359,"d":"0.31"},"X"]
["g3443.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|670388583|ref|XP_008674752.1|",{"$nulls":4},{"v":0.0226180358183112,"d":"0.02"},{"v":0.104779751484226,"d":"0.10"},{"v":0.253049604692554,"d":"0.25"},{"v":0.199052680065881,"d":"0.20"}]
["g3444.t1",{"$nulls":6},"ARATHwo_AT2G32900.1","homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome segregation","sp|O48626|ZW10_ARATH","Centromere/kinetochore protein zw10 homolog","gi|923869434|ref|XP_013709130.1|",{"$nulls":4},{"v":0.130088832078063,"d":"0.13"},{"v":0.4510011600958,"d":"0.45"},{"v":1.20934886188526,"d":"1.21"},{"v":0.276292106355568,"d":"0.28"},null,"X"]
["g3445.t1",6259,5488,null,"DNA metabolic process","binding",{"$nulls":3},"sp|Q9WC63|POL_HV1S9","Gag-Pol polyprotein","gi|658033252|ref|XP_008352136.1|",{"$nulls":4},{"v":0.128921093235893,"d":"0.13"},{"v":0.18776563582065,"d":"0.19"},{"v":0.779631179890922,"d":"0.78"},{"v":0.106420265930087,"d":"0.11"},"X"]
["g3446.t1",{"$nulls":15},{"v":1.04527684597715,"d":"1.05"},{"v":1.40446724740471,"d":"1.40"},{"v":0.894283686330788,"d":"0.89"},{"v":0.488036682545877,"d":"0.49"}]
["g3447.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q82851|POL_JEMBR","Gag-Pol polyprotein","gi|657948755|ref|XP_008339280.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.156627539731074,"d":"0.16"},{"v":1.39606640142596,"d":"1.40"},{"v":0.278680477374308,"d":"0.28"},"X"]
["g3448.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P03371|POL_EIAVY","Pol polyprotein","gi|658020199|ref|XP_008345476.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.100701374400806,"d":"0.10"},{"v":0.1291997973425,"d":"0.13"},{"v":0.042444839831161,"d":"0.04"},"X"]
["g3449.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|657997735|ref|XP_008391257.1|",{"$nulls":4},{"v":0.136500544294042,"d":"0.14"},{"v":0.517586125406359,"d":"0.52"},{"v":1.07531260385083,"d":"1.08"},{"v":0.819631100623767,"d":"0.82"},"X"]
["g3450.t1",{"$nulls":15},{"v":0.768557576371532,"d":"0.77"},{"v":1.52753513816781,"d":"1.53"},{"v":1.64362630750314,"d":"1.64"},{"v":0.452290398141784,"d":"0.45"}]
["g3451.t1",{"$nulls":8},"sp|A4FUB7|GIN1_BOVIN","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.218292642845326,"d":"0.22"},{"v":0.132532467121146,"d":"0.13"},null,"X"]
["g3452.t1",{"$nulls":6},"ARATHwo_AT4G31530.2","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: 3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity; INVOLVED IN: steroid biosynthetic process, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G37660.1).","sp|O80934|Y2766_ARATH","Uncharacterized protein At2g37660, chloroplastic","gi|302800562|ref|XP_002982038.1|",null,"x","x","x",{"v":31.875164326004,"d":"31.88"},{"v":29.2574607696243,"d":"29.26"},{"v":20.2396879111558,"d":"20.24"},{"v":1.47401670342973,"d":"1.47"}]
["g3453.t1",{"$nulls":15},{"v":0.0642912671889473,"d":"0.06"},{"v":0.191893068987025,"d":"0.19"},{"v":0.627515409188885,"d":"0.63"},{"v":0.122226216615293,"d":"0.12"},"X",null,"X"]
["g3454.t1",{"$nulls":15},{"v":0.0508665641493746,"d":"0.05"},{"v":0.0485764298718573,"d":"0.05"},{"v":0.118858762268835,"d":"0.12"},{"v":0.211513408952816,"d":"0.21"}]
["g3455.t1"]
["g3456.t1",{"$nulls":11},"x"]
["g3457.t1",{"$nulls":6},"ARATHwo_AT4G04890.1","Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|49256739|emb|CAG34127.1|",{"$nulls":4},{"v":9.12894493059048,"d":"9.13"},{"v":12.5926166862525,"d":"12.59"},{"v":9.34970162404077,"d":"9.35"},{"v":0.20835008921084,"d":"0.21"},null,"X"]
["g3458.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.120105794730235,"d":"0.12"},{"v":0.7430776036279,"d":"0.74"},{"v":0.437262910484788,"d":"0.44"}]
["g3459.t1",{"$nulls":6},"ARATHwo_AT1G02120.1","Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.","sp|F4HVW5|VAD1_ARATH","Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic","gi|729353857|ref|XP_010544356.1|",null,null,"x","x",{"v":5.06336767266705,"d":"5.06"},{"v":6.89344233988082,"d":"6.89"},{"v":4.66241036559986,"d":"4.66"},{"v":35.7274153065847,"d":"35.73"},null,"X"]
["g3460.t1","0001510:0006396:0006164:0006364:0001522","0003723:0009982","0005829:0005730:0009506:0030529","RNA methylation:RNA processing:purine nucleotide biosynthetic process:rRNA processing:pseudouridine synthesis","RNA binding:pseudouridine synthase activity","cytosol:nucleolus:plasmodesma:ribonucleoprotein complex","ARATHwo_AT3G57150.1","Encodes a putative pseudouridine synthase (NAP57).","sp|Q9LD90|CBF5_ARATH","H/ACA ribonucleoprotein complex subunit 4","gi|168053405|ref|XP_001779127.1|",null,"x","x","x",{"v":37.4640628633493,"d":"37.46"},{"v":34.2672147429184,"d":"34.27"},{"v":12.9799263366202,"d":"12.98"},{"v":19.0246519305785,"d":"19.02"}]
["g3461.t1",{"$nulls":10},"gi|302786734|ref|XP_002975138.1|",null,null,"x","x",{"v":1.06355814083662,"d":"1.06"},{"v":2.07987424529128,"d":"2.08"},{"v":1.37521557683855,"d":"1.38"},{"v":4.9721440754645,"d":"4.97"}]
["g3462.t1",null,null,5634,null,null,"nucleus","ARATHwo_AT1G02330.1","CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).","sp|Q3TQI7|CI078_MOUSE","Uncharacterized protein C9orf78 homolog","gi|168003604|ref|XP_001754502.1|",{"$nulls":4},{"v":8.46244432446954,"d":"8.46"},{"v":3.79947617775492,"d":"3.80"},{"v":7.71491211494431,"d":"7.71"},{"v":6.91388726933155,"d":"6.91"}]
["g3463.t1","0032508:0006139","0004003:0003677:0005524",5634,"DNA duplex unwinding:nucleobase-containing compound metabolic process","ATP-dependent DNA helicase activity:DNA binding:ATP binding","nucleus","ARATHwo_AT1G79890.1","RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79950.1); Has 2489 Blast hits to 1811 proteins in 412 species: Archae - 187; Bacteria - 188; Metazoa - 839; Fungi - 373; Plants - 265; Viruses - 5; Other Eukaryotes - 632 (source: NCBI BLink).","sp|B4NDG5|RTEL1_DROWI","Regulator of telomere elongation helicase 1 homolog","gi|702375550|ref|XP_010062453.1|",{"$nulls":4},{"v":3.36219976404677,"d":"3.36"},{"v":0.985719896550313,"d":"0.99"},{"v":1.63733604057369,"d":"1.64"},{"v":1.02914780073251,"d":"1.03"}]
["g3464.t2","0016246:0070918:0051276:0006355:0048507","0000166:0008026:0003676",43231,"RNA interference:production of small RNA involved in gene silencing by RNA:chromosome organization:regulation of transcription, DNA-dependent:meristem development","nucleotide binding:ATP-dependent helicase activity:nucleic acid binding","intracellular membrane-bounded organelle","ARATHwo_AT1G79950.1","RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3149 Blast hits to 2661 proteins in 831 species: Archae - 223; Bacteria - 987; Metazoa - 718; Fungi - 431; Plants - 207; Viruses - 6; Other Eukaryotes - 577 (source: NCBI BLink).","sp|A7ERG1|CHL1_SCLS1","ATP-dependent RNA helicase CHL1","gi|167999293|ref|XP_001752352.1|",null,null,"x","x",{"v":0.748638261413858,"d":"0.75"},{"v":0.569991336468899,"d":"0.57"},{"v":0.619816825888849,"d":"0.62"},{"v":1.27912440327866,"d":"1.28"}]
["g3464.t1","0016246:0070918:0051276:0006355:0048507","0000166:0008026:0003676",43231,"RNA interference:production of small RNA involved in gene silencing by RNA:chromosome organization:regulation of transcription, DNA-dependent:meristem development","nucleotide binding:ATP-dependent helicase activity:nucleic acid binding","intracellular membrane-bounded organelle",null,null,"sp|Q96FC9|DDX11_HUMAN","Probable ATP-dependent RNA helicase DDX11","gi|470134137|ref|XP_004302912.1|",null,null,"x","x",{"v":0.748638261413858,"d":"0.75"},{"v":0.569991336468899,"d":"0.57"},{"v":0.619816825888849,"d":"0.62"},{"v":1.27912440327866,"d":"1.28"}]
["g3465.t1",{"$nulls":6},"ARATHwo_AT1G20720.1","RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20750.1); Has 2863 Blast hits to 2328 proteins in 675 species: Archae - 243; Bacteria - 679; Metazoa - 737; Fungi - 397; Plants - 210; Viruses - 5; Other Eukaryotes - 592 (source: NCBI BLink).","sp|Q5RJZ1|RTEL1_RAT","Regulator of telomere elongation helicase 1","gi|566173459|ref|XP_006383763.1|",{"$nulls":4},{"v":0.875714801003005,"d":"0.88"},{"v":1.32170772575447,"d":"1.32"},{"v":1.01058316454671,"d":"1.01"},{"v":0.650873250803436,"d":"0.65"}]
["g3466.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.354846269013327,"d":"0.35"},{"v":0,"d":"0.00"},"X"]
["g3467.t1",{"$nulls":6},"ARATHwo_AT3G13960.1","Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.","sp|Q8L8A6|GRF5_ARATH","Growth-regulating factor 5","gi|702243352|ref|XP_010049767.1|",{"$nulls":4},{"v":1.576693032059,"d":"1.58"},{"v":3.77608403000947,"d":"3.78"},{"v":8.78544826233292,"d":"8.79"},{"v":13.8518779286191,"d":"13.85"}]
["g3468.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.105235749156787,"d":"0.11"},{"v":0,"d":"0.00"}]
["g3469.t1"]
["g3470.t1",{"$nulls":8},"sp|Q9HR74|DMSA_HALSA","Putative dimethyl sulfoxide reductase catalytic subunit A",{"$nulls":10},"X"]
["g3471.t1","0009987:0008152:0006950",16740,16020,"cellular process:metabolic process:response to stress","transferase activity","membrane","ARATHwo_AT2G44660.1","ALG6, ALG8 glycosyltransferase family; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG6/ALG8 (InterPro:IPR004856); BEST Arabidopsis thaliana protein match is: ALG6, ALG8 glycosyltransferase family (TAIR:AT5G38460.2); Has 667 Blast hits to 660 proteins in 181 species: Archae - 0; Bacteria - 16; Metazoa - 273; Fungi - 247; Plants - 67; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).","sp|O80505|ALG8_ARATH","Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase","gi|460367709|ref|XP_004229713.1|",null,null,"x","x",{"v":1.47453321638187,"d":"1.47"},{"v":1.6289994490745,"d":"1.63"},{"v":0.86717627657888,"d":"0.87"},{"v":0.45105142689007,"d":"0.45"}]
["g3472.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|672206794|ref|XP_008779530.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.194142271306618,"d":"0.19"},{"v":0,"d":"0.00"},"X"]
["g3473.t1",null,5524,null,null,"ATP binding",null,"ARATHwo_AT5G16930.1","AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G03060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6PAX2|ATD3B_XENLA","ATPase family AAA domain-containing protein 3-B","gi|168032696|ref|XP_001768854.1|",null,null,"x","x",{"v":4.65968221428476,"d":"4.66"},{"v":5.14590262436777,"d":"5.15"},{"v":2.24422737589217,"d":"2.24"},{"v":9.63959017278675,"d":"9.64"}]
["g3474.t1",{"$nulls":6},"ARATHwo_AT2G01650.1","encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.","sp|Q9ZU93|PUX2_ARATH","Plant UBX domain-containing protein 2","gi|848892223|ref|XP_012846203.1|",null,null,"x","x",{"v":4.6237396086384,"d":"4.62"},{"v":4.02147891668698,"d":"4.02"},{"v":4.29833422132034,"d":"4.30"},{"v":3.80587140633278,"d":"3.81"}]
["g3475.t1",{"$nulls":13},"x","x",{"v":10.8712659477807,"d":"10.87"},{"v":7.71402456768526,"d":"7.71"},{"v":9.04386182518058,"d":"9.04"},{"v":2.16394368483793,"d":"2.16"}]
["g3476.t1",{"$nulls":15},{"v":0.452957217699291,"d":"0.45"},{"v":0.201157184492135,"d":"0.20"},{"v":0.188170138056072,"d":"0.19"},{"v":0.578395394366594,"d":"0.58"}]
["g3477.t1","0055114:0042373:0030855:0019371:0017144","0004090:0016655","0005829:0070062","oxidation-reduction process:vitamin K metabolic process:epithelial cell differentiation:cyclooxygenase pathway:drug metabolic process","carbonyl reductase (NADPH) activity:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor","cytosol:extracellular vesicular exosome","ARATHwo_AT5G51030.1","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G61830.1); Has 71841 Blast hits to 71789 proteins in 3167 species: Archae - 666; Bacteria - 49161; Metazoa - 4545; Fungi - 3057; Plants - 2484; Viruses - 2; Other Eukaryotes - 11926 (source: NCBI BLink).","sp|P48758|CBR1_MOUSE","Carbonyl reductase [NADPH] 1","gi|589937293|ref|XP_006981407.1|",{"$nulls":4},{"v":18.3423233052046,"d":"18.34"},{"v":44.9964281766666,"d":"45.00"},{"v":52.5846217937079,"d":"52.58"},{"v":25.3911855416893,"d":"25.39"}]
["g3478.t1","0007267:0035196:0010267:0009616",16301,16020,"cell-cell signaling:production of miRNAs involved in gene silencing by miRNA:production of ta-siRNAs involved in RNA interference:virus induced gene silencing","kinase activity","membrane","ARATHwo_AT1G10620.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q9SGY7|PEK11_ARATH","Putative proline-rich receptor-like protein kinase PERK11","gi|565352261|ref|XP_006343064.1|",{"$nulls":4},{"v":1.38994464799886,"d":"1.39"},{"v":36.0123905338936,"d":"36.01"},{"v":6.25881889410406,"d":"6.26"},{"v":0.138140303942411,"d":"0.14"}]
["g3479.t1"]
["g3480.t1",{"$nulls":6},"ARATHwo_AT4G29680.1","Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2446 Blast hits to 2426 proteins in 629 species: Archae - 13; Bacteria - 1090; Metazoa - 671; Fungi - 207; Plants - 107; Viruses - 6; Other Eukaryotes - 352 (source: NCBI BLink).","sp|O94323|YGK5_SCHPO","Uncharacterized pyrophosphatase/phosphodiesterase C725.05c","gi|678984069|gb|KFV93997.1|",{"$nulls":4},{"v":2.0333174029306,"d":"2.03"},{"v":17.3248449858721,"d":"17.32"},{"v":20.0587168264868,"d":"20.06"},{"v":3.22238214610222,"d":"3.22"}]
["g3481.t1",{"$nulls":12},"x","x","x",{"v":56.1284190337068,"d":"56.13"},{"v":21.5487328182882,"d":"21.55"},{"v":17.2290030911389,"d":"17.23"},{"v":3.951631109782,"d":"3.95"}]
["g3482.t1","0051276:0006302:0007059:0007127","0046872:0034061",null,"chromosome organization:double-strand break repair:chromosome segregation:meiosis I","metal ion binding:DNA polymerase activity",null,"ARATHwo_AT1G10520.1","Encodes a homolog of the mammalian DNA polymerase lambda that is involved in the repair of UV-B induced DNA damage.","sp|Q9UGP5|DPOLL_HUMAN","DNA polymerase lambda","gi|168048054|ref|XP_001776483.1|",{"$nulls":4},{"v":3.47661857114018,"d":"3.48"},{"v":0.783157386610021,"d":"0.78"},{"v":5.86490714061536,"d":"5.86"},{"v":2.74090008940403,"d":"2.74"}]
["g3483.t1",{"$nulls":15},{"v":0.542280376595029,"d":"0.54"},{"v":0.0539029684506237,"d":"0.05"},{"v":1.50052695158476,"d":"1.50"},{"v":0,"d":"0.00"}]
["g3484.t1",{"$nulls":10},"gi|302814915|ref|XP_002989140.1|",{"$nulls":4},{"v":0.752276673917025,"d":"0.75"},{"v":0.804022254929906,"d":"0.80"},{"v":0.9241085435427,"d":"0.92"},{"v":3.35009664583056,"d":"3.35"}]
["g3485.t1",{"$nulls":6},"ARATHwo_AT2G31970.1","Encodes the Arabidopsis RAD50 homologue. It is involved in double strand break repair. Component of the meiotic recombination complex that processes meiotic double-strand-breaks to produce single-stranded DNA ends, which act in the homology search and recombination. Accumulates in the nucleus during meiotic prophase, a process regulated by PHS1.",null,null,"gi|357113507|ref|XP_003558544.1|",{"$nulls":4},{"v":0.0560574238554362,"d":"0.06"},{"v":1.91549497688255,"d":"1.92"},{"v":0.65856188634603,"d":"0.66"},{"v":0.403058548419847,"d":"0.40"}]
["g3486.t1",{"$nulls":15},{"v":0.139960794911868,"d":"0.14"},{"v":0.106690253595447,"d":"0.11"},{"v":0.416077882320826,"d":"0.42"},{"v":0,"d":"0.00"}]
["g3487.t1",{"$nulls":6},"ARATHwo_AT3G08660.1","Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G08570.1); Has 956 Blast hits to 919 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 886; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","sp|Q9C9Z0|Y3866_ARATH","Putative BTB/POZ domain-containing protein At3g08660","gi|242033565|ref|XP_002464177.1|",null,null,"x","x",{"v":0.0614062817506292,"d":"0.06"},{"v":4.08923909447313,"d":"4.09"},{"v":0.2673440297992,"d":"0.27"},{"v":6.56347066080784,"d":"6.56"}]
["g3488.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":4},{"v":0.012466516003239,"d":"0.01"},{"v":0.0243459178290238,"d":"0.02"},{"v":0.0462951523618116,"d":"0.05"},{"v":0,"d":"0.00"}]
["g3489.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|P03364|POL_SMRVH","Pol polyprotein","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0.14232571413945,"d":"0.14"},{"v":0.394198790572705,"d":"0.39"},{"v":36.0974411036395,"d":"36.10"},{"v":0.35984443036003,"d":"0.36"}]
["g3490.t1",6259,5488,null,"DNA metabolic process","binding",{"$nulls":5},"gi|658033252|ref|XP_008352136.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.148198163139224,"d":"0.15"},{"v":2.70390000614583,"d":"2.70"},{"v":0,"d":"0.00"},"X"]
["g3491.t1",{"$nulls":10},"gi|802760765|ref|XP_012089545.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0588644634460273,"d":"0.06"},{"v":0.654094730958466,"d":"0.65"},{"v":0.22692212929251,"d":"0.23"},"X"]
["g3492.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.51683756747854,"d":"0.52"},{"v":0,"d":"0.00"}]
["g3493.t1"]
["g3494.t1",{"$nulls":6},"ARATHwo_AT5G13600.1","Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G03250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FNB3|Y5360_ARATH","Putative BTB/POZ domain-containing protein At5g13600","gi|920701738|gb|KOM44963.1|",{"$nulls":4},{"v":0.0582614337839858,"d":"0.06"},{"v":0.636842247469648,"d":"0.64"},{"v":0.176963539005005,"d":"0.18"},{"v":0.840382761570427,"d":"0.84"}]
["g3495.t1",16311,4721,null,"dephosphorylation","phosphoprotein phosphatase activity",null,"ARATHwo_AT3G19980.1","Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.","sp|Q8LSN3|FYPP_PEA","Phytochrome-associated serine/threonine-protein phosphatase","gi|168010879|ref|XP_001758131.1|",null,null,"x","x",{"v":9.64542098241043,"d":"9.65"},{"v":3.13710827268904,"d":"3.14"},{"v":3.09153009192474,"d":"3.09"},{"v":1.28649580630264,"d":"1.29"}]
["g3496.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|77555663|gb|ABA98459.1|",{"$nulls":4},{"v":0.166008947153792,"d":"0.17"},{"v":0.623203986759381,"d":"0.62"},{"v":4.13373015091555,"d":"4.13"},{"v":1.27397724050697,"d":"1.27"},null,"X"]
["g3497.t1",{"$nulls":6},"ARATHwo_AT1G30960.1","GTP-binding family protein; FUNCTIONS IN: RNA binding, GTP binding; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein Era (InterPro:IPR005662), GTP-binding protein, HSR1-related (InterPro:IPR002917), K homology-like, alpha/beta (InterPro:IPR015946); BEST Arabidopsis thaliana protein match is: RNA binding;GTP binding (TAIR:AT5G66470.1); Has 21534 Blast hits to 19384 proteins in 2851 species: Archae - 72; Bacteria - 16256; Metazoa - 383; Fungi - 140; Plants - 214; Viruses - 0; Other Eukaryotes - 4469 (source: NCBI BLink).","sp|O82653|ERG_ARATH","GTP-binding protein ERG","gi|217071202|gb|ACJ83961.1|",{"$nulls":4},{"v":10.2800617599585,"d":"10.28"},{"v":4.79056799307909,"d":"4.79"},{"v":3.38071815366816,"d":"3.38"},{"v":1.07181311323186,"d":"1.07"}]
["g3498.t1",{"$nulls":15},{"v":44.4111323587964,"d":"44.41"},{"v":3.04593348622281,"d":"3.05"},{"v":2.03076415592722,"d":"2.03"},{"v":0,"d":"0.00"}]
["g3499.t1",{"$nulls":15},{"v":0.0818715756380501,"d":"0.08"},{"v":1.74833669012186,"d":"1.75"},{"v":2.04000484990552,"d":"2.04"},{"v":0.29806343995562,"d":"0.30"}]
["g2729.t1",{"$nulls":13},"x","x",{"v":1.27975104332406,"d":"1.28"},{"v":2.54777583596499,"d":"2.55"},{"v":3.08585807753314,"d":"3.09"},{"v":5.94465504966283,"d":"5.94"}]
["g2730.t1",{"$nulls":15},{"v":0.0554890600612171,"d":"0.06"},{"v":0.727282483313476,"d":"0.73"},{"v":2.14782827231659,"d":"2.15"},{"v":2.79555429605235,"d":"2.80"},"X",null,"X"]
["g2731.t1",{"$nulls":13},"x","x",{"v":1.23833379785989,"d":"1.24"},{"v":1.51376321136513,"d":"1.51"},{"v":2.44032785477032,"d":"2.44"},{"v":6.48867348946201,"d":"6.49"}]
["g2732.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.090842173304187,"d":"0.09"},{"v":0.295009163438223,"d":"0.30"},{"v":0.234896780181101,"d":"0.23"},"X"]
["g2733.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.424613615572331,"d":"0.42"},{"v":0.321063788757448,"d":"0.32"},"X",null,"X"]
["g2734.t1",{"$nulls":8},"sp|P03360|POL_AVIRE","Pol polyprotein","gi|657989954|ref|XP_008387198.1|",{"$nulls":4},{"v":0.0704216728624939,"d":"0.07"},{"v":0.0401788881090393,"d":"0.04"},{"v":0.827317062261395,"d":"0.83"},{"v":0.489002649193031,"d":"0.49"},"X"]
["g2735.t1",{"$nulls":15},{"v":0.0970744520156406,"d":"0.10"},{"v":0.50368067873007,"d":"0.50"},{"v":1.3588794803247,"d":"1.36"},{"v":1.49103057318414,"d":"1.49"},null,"X","X"]
["g2736.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|731351756|ref|XP_010687195.1|",{"$nulls":4},{"v":1.70371841571432,"d":"1.70"},{"v":2.58692121195366,"d":"2.59"},{"v":2.70533113333618,"d":"2.71"},{"v":8.0450244305786,"d":"8.05"}]
["g2737.t1",{"$nulls":6},"ARATHwo_AT2G18340.1","late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein (TAIR:AT4G36600.1); Has 8432 Blast hits to 2711 proteins in 785 species: Archae - 21; Bacteria - 3659; Metazoa - 711; Fungi - 355; Plants - 2545; Viruses - 35; Other Eukaryotes - 1106 (source: NCBI BLink).",null,null,"gi|327471002|gb|EGF16457.1|",null,null,"x","x",{"v":0.708999545952195,"d":"0.71"},{"v":38.3253670219257,"d":"38.33"},{"v":3.90255835559684,"d":"3.90"},{"v":361.30341964133,"d":"361.30"}]
["g2738.t1"]
["g2739.t1",{"$nulls":10},"gi|760447619|ref|XP_011400878.1|",null,null,"x","x",{"v":1.92961056833848,"d":"1.93"},{"v":2.43317916043492,"d":"2.43"},{"v":10.4020382649149,"d":"10.40"},{"v":1.1799404988611,"d":"1.18"}]
["g2740.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q00962|POL_CAMVN","Enzymatic polyprotein","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0.306990993837024,"d":"0.31"},{"v":0.393822675761187,"d":"0.39"},{"v":6.25285921179163,"d":"6.25"},{"v":1.23254402621049,"d":"1.23"},null,"X"]
["g2741.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|661175528|emb|CDH61236.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0465730274657933,"d":"0.05"},{"v":0.432511173422609,"d":"0.43"},{"v":0,"d":"0.00"},"X"]
["g2741.t2",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0465730274657933,"d":"0.05"},{"v":0.432511173422609,"d":"0.43"},{"v":0,"d":"0.00"}]
["g2742.t1",{"$nulls":10},"gi|302825770|ref|XP_002994470.1|",null,null,"x","x",{"v":0.669791220042617,"d":"0.67"},{"v":0,"d":"0.00"},{"v":33.8570678800385,"d":"33.86"},{"v":0,"d":"0.00"}]
["g2743.t1",{"$nulls":6},"ARATHwo_AT3G04830.1","Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G28220.1); Has 554 Blast hits to 546 proteins in 223 species: Archae - 33; Bacteria - 51; Metazoa - 210; Fungi - 111; Plants - 58; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).","sp|Q5M7J9|EMC2_XENTR","ER membrane protein complex subunit 2","gi|168033208|ref|XP_001769108.1|",null,"x","x","x",{"v":18.4998689804868,"d":"18.50"},{"v":19.4054379917621,"d":"19.41"},{"v":12.1332645961088,"d":"12.13"},{"v":7.68564623439691,"d":"7.69"}]
["g2744.t1"]
["g2745.t1",{"$nulls":6},"ARATHwo_AT2G31400.1","Encodes a a chloroplast-localized pentatricopeptide-repeat protein involved in regulation of nuclear gene expression.","sp|Q9SIC9|PP178_ARATH","Pentatricopeptide repeat-containing protein At2g31400, chloroplastic",{"$nulls":3},"x","x",{"v":4.63860453629968,"d":"4.64"},{"v":3.47937876297743,"d":"3.48"},{"v":2.51435888463425,"d":"2.51"},{"v":1.89611935298814,"d":"1.90"}]
["g2746.t1",{"$nulls":6},"ARATHwo_AT5G14440.1","Surfeit locus protein 2 (SURF2); CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 2 (SURF2) (TAIR:AT5G40570.1); Has 6258 Blast hits to 4510 proteins in 365 species: Archae - 8; Bacteria - 221; Metazoa - 2197; Fungi - 751; Plants - 330; Viruses - 76; Other Eukaryotes - 2675 (source: NCBI BLink).","sp|P09926|SURF2_MOUSE","Surfeit locus protein 2","gi|145538957|ref|XP_001455173.1|",{"$nulls":4},{"v":18.4378032876319,"d":"18.44"},{"v":15.5165236135723,"d":"15.52"},{"v":10.4895074188607,"d":"10.49"},{"v":8.64080163674424,"d":"8.64"}]
["g2747.t1",null,5488,"0043234:0000775",null,"binding","protein complex:chromosome, centromeric region","ARATHwo_AT4G40030.2","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14638 Blast hits to 14630 proteins in 7251 species: Archae - 0; Bacteria - 0; Metazoa - 10605; Fungi - 2037; Plants - 1272; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).",null,null,"gi|397573743|gb|EJK48849.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0750537842731397,"d":"0.08"},{"v":0,"d":"0.00"}]
["g2748.t1",{"$nulls":6},"ARATHwo_AT2G14080.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 59112 Blast hits to 27121 proteins in 1046 species: Archae - 26; Bacteria - 3020; Metazoa - 5754; Fungi - 417; Plants - 46550; Viruses - 22; Other Eukaryotes - 3323 (source: NCBI BLink).","sp|Q9SZA7|DRL29_ARATH","Probable disease resistance protein At4g33300","gi|326516606|dbj|BAJ92458.1|",null,null,"x","x",{"v":3.84053930809949,"d":"3.84"},{"v":5.8487097427818,"d":"5.85"},{"v":3.30933746806991,"d":"3.31"},{"v":20.3424084900886,"d":"20.34"}]
["g2749.t1"]
["g2750.t1"]
["g2751.t1",{"$nulls":15},{"v":0.23912394425044,"d":"0.24"},{"v":5.65617451638397,"d":"5.66"},{"v":7.88304151647714,"d":"7.88"},{"v":7.89639467913538,"d":"7.90"}]
["g2752.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.335029715984539,"d":"0.34"},{"v":0.226201004865797,"d":"0.23"},{"v":0.219455166799967,"d":"0.22"},"X"]
["g2753.t1",{"$nulls":6},"ARATHwo_AT5G18360.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G17970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q6Z8P4|PIRL4_ORYSJ","Plant intracellular Ras-group-related LRR protein 4","gi|28555894|emb|CAD45029.1|",null,null,"x","x",{"v":0.108057010233201,"d":"0.11"},{"v":4.2534912681397,"d":"4.25"},{"v":5.66682028807754,"d":"5.67"},{"v":3.69940018761731,"d":"3.70"}]
["g2754.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.11492569103687,"d":"0.11"},{"v":0.26962330103742,"d":"0.27"},{"v":3.20642187168039,"d":"3.21"},{"v":0,"d":"0.00"},"X"]
["g2755.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|406696795|gb|EKD00070.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.270886131602141,"d":"0.27"},{"v":0,"d":"0.00"},"X"]
["g2756.t1",{"$nulls":10},"gi|743944356|ref|XP_011016699.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.268364573040764,"d":"0.27"},{"v":1.66198834232242,"d":"1.66"},{"v":0.0636532395057707,"d":"0.06"},"X"]
["g2757.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.",null,null,"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.101305486714102,"d":"0.10"},{"v":0.992217466544733,"d":"0.99"},{"v":0.0386734101717087,"d":"0.04"},null,"X"]
["g2758.t1",{"$nulls":8},"sp|O93209|POL_FFV","Pro-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.06484837242223,"d":"1.06"},{"v":0,"d":"0.00"},"X"]
["g2759.t1",{"$nulls":8},"sp|P05400|POL_CERV","Enzymatic polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0739853206617561,"d":"0.07"},{"v":1.28330205524451,"d":"1.28"},{"v":0,"d":"0.00"},null,"X"]
["g2760.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|861612721|gb|KMQ85528.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":1.14293793550047,"d":"1.14"},{"v":6.05616878508392,"d":"6.06"},{"v":1.29494379650533,"d":"1.29"},"X"]
["g2761.t1",{"$nulls":6},"ARATHwo_AT1G73720.1","Encodes SMU1, a protein involved in RNA splicing.",{"$nulls":7},{"v":0.0139033423988548,"d":"0.01"},{"v":0.266410754560535,"d":"0.27"},{"v":3.55820864204271,"d":"3.56"},{"v":0,"d":"0.00"}]
["g2762.t1",{"$nulls":6},"ARATHwo_AT1G43760.1","DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G40390.1); Has 1816 Blast hits to 1744 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 164; Fungi - 4; Plants - 1633; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|141475|sp|P14381.1|YTX2_XENLA"]
["g2763.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.121983778452024,"d":"0.12"},{"v":0,"d":"0.00"}]
["g2764.t1"]
["g2765.t2",{"$nulls":15},{"v":0.492243640044083,"d":"0.49"},{"v":1.91004478563111,"d":"1.91"},{"v":6.81382237580602,"d":"6.81"},{"v":4.31612652017935,"d":"4.32"}]
["g2765.t1",{"$nulls":15},{"v":0.492243640044083,"d":"0.49"},{"v":1.91004478563111,"d":"1.91"},{"v":6.81382237580602,"d":"6.81"},{"v":4.31612652017935,"d":"4.32"}]
["g2766.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|53981942|gb|AAV25060.1|",{"$nulls":4},{"v":0.197359882535236,"d":"0.20"},{"v":0.546160758139512,"d":"0.55"},{"v":4.38388254003051,"d":"4.38"},{"v":0.622278333756919,"d":"0.62"},null,"X"]
["g2767.t1",{"$nulls":15},{"v":1.85786502647944,"d":"1.86"},{"v":1.34935528189284,"d":"1.35"},{"v":3.12912464999943,"d":"3.13"},{"v":6.42746185352495,"d":"6.43"}]
["g2767.t2",{"$nulls":15},{"v":1.85786502647944,"d":"1.86"},{"v":1.34935528189284,"d":"1.35"},{"v":3.12912464999943,"d":"3.13"},{"v":6.42746185352495,"d":"6.43"}]
["g2768.t1",44699,null,null,"single-organism process",null,null,"ARATHwo_AT1G05790.1","lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1); Has 496 Blast hits to 490 proteins in 107 species: Archae - 0; Bacteria - 1; Metazoa - 175; Fungi - 34; Plants - 194; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).","sp|Q5YLM1|DGLA_RAT","Sn1-specific diacylglycerol lipase alpha","gi|302812116|ref|XP_002987746.1|",null,null,"x","x",{"v":2.58129768379812,"d":"2.58"},{"v":9.11584480330446,"d":"9.12"},{"v":19.4117098069172,"d":"19.41"},{"v":10.2619803455606,"d":"10.26"}]
["g2769.t1",{"$nulls":13},"x","x",{"v":0.0878379406108407,"d":"0.09"},{"v":5.20155659981239,"d":"5.20"},{"v":21.1366200200094,"d":"21.14"},{"v":5.06885826125701,"d":"5.07"}]
["g2770.t1","0050896:0050789:0044699:0016310","0004672:0000166",16020,"response to stimulus:regulation of biological process:single-organism process:phosphorylation","protein kinase activity:nucleotide binding","membrane","ARATHwo_AT4G22130.1","STRUBBELIG-receptor family 8 (SRF8); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1); Has 157986 Blast hits to 122624 proteins in 4302 species: Archae - 115; Bacteria - 15061; Metazoa - 46349; Fungi - 9189; Plants - 68190; Viruses - 340; Other Eukaryotes - 18742 (source: NCBI BLink).","sp|Q6R2J8|SRF8_ARATH","Protein STRUBBELIG-RECEPTOR FAMILY 8","gi|168063777|ref|XP_001783845.1|",{"$nulls":4},{"v":8.28719748541519,"d":"8.29"},{"v":22.5229575711606,"d":"22.52"},{"v":11.944668696945,"d":"11.94"},{"v":6.94695724841785,"d":"6.95"}]
["g2771.t1",{"$nulls":20},"X","X"]
["g2772.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0161678235682463,"d":"0.02"},{"v":0.0514100463737677,"d":"0.05"},{"v":0,"d":"0.00"},null,"X"]
["g2773.t1",null,166,"0043234:0044430:0015630",null,"nucleotide binding","protein complex:cytoskeletal part:microtubule cytoskeleton","ARATHwo_AT1G73860.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: petal, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G18410.1); Has 138507 Blast hits to 76202 proteins in 2961 species: Archae - 1220; Bacteria - 20098; Metazoa - 63175; Fungi - 11698; Plants - 7059; Viruses - 430; Other Eukaryotes - 34827 (source: NCBI BLink).","sp|Q9US03|KLP2_SCHPO","Kinesin-like protein 2","gi|325179922|emb|CCA14324.1|",null,null,"x","x",{"v":2.95872252696269,"d":"2.96"},{"v":5.29388435257753,"d":"5.29"},{"v":17.9901200666291,"d":"17.99"},{"v":1.67323558721036,"d":"1.67"}]
["g2774.t1",{"$nulls":10},"gi|761968396|gb|KIY99630.1|",null,"x",null,"x",{"v":0.725077430343943,"d":"0.73"},{"v":1.13667582072402,"d":"1.14"},{"v":86.700936144966,"d":"86.70"},{"v":1.71527361760043,"d":"1.72"}]
["g2775.t1",{"$nulls":15},{"v":0.0571663166564571,"d":"0.06"},{"v":0.39607602882946,"d":"0.40"},{"v":2.02959419017286,"d":"2.03"},{"v":0,"d":"0.00"},"X",null,"X"]
["g2776.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|657997735|ref|XP_008391257.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0818629481466938,"d":"0.08"},{"v":0.16734787579573,"d":"0.17"},{"v":0.0246825406889102,"d":"0.02"},null,"X"]
["g2777.t1","0007275:0006351:0051707:0050789:0006952",5488,5739,"multicellular organismal development:transcription, DNA-dependent:response to other organism:regulation of biological process:defense response","binding","mitochondrion","ARATHwo_AT5G14750.1","Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).","sp|Q9SEI0|WER_ARATH","Transcription factor WER","gi|672135130|ref|XP_008791227.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":1.44563520921874,"d":"1.45"},{"v":0.340836985119544,"d":"0.34"},{"v":2.53318105061953,"d":"2.53"}]
["g2778.t1",{"$nulls":8},"sp|Q8K259|GIN1_MOUSE","Gypsy retrotransposon integrase-like protein 1","gi|749715597|gb|KII64432.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.200311782805313,"d":"0.20"},{"v":0.924989523841814,"d":"0.92"},{"v":0.266088366388129,"d":"0.27"},"X"]
["g2779.t1",{"$nulls":8},"sp|P04025|POL_SRV1","Pol polyprotein","gi|727651886|ref|XP_010496662.1|",{"$nulls":8},"X"]
["g2780.t1"]
["g2781.t1"]
["g2782.t1"]
["g2783.t1","0009688:0009414:0016123:0022900:0050891:0006725:0009737","0009540:0052662","0009941:0016020:0009579","abscisic acid biosynthetic process:response to water deprivation:xanthophyll biosynthetic process:electron transport chain:multicellular organismal water homeostasis:cellular aromatic compound metabolic process:response to abscisic acid stimulus","zeaxanthin epoxidase [overall] activity:zeaxanthin epoxidase activity","chloroplast envelope:membrane:thylakoid","ARATHwo_AT5G67030.1","Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.","sp|P93236|ABA2_SOLLC","Zeaxanthin epoxidase, chloroplastic","gi|168029375|ref|XP_001767201.1|",null,null,"x","x",{"v":12.1273846515907,"d":"12.13"},{"v":3.49492654856922,"d":"3.49"},{"v":5.40819756592777,"d":"5.41"},{"v":0.149610424989918,"d":"0.15"}]
["g2784.t1",{"$nulls":10},"gi|551656298|ref|XP_005830922.1|",{"$nulls":4},{"v":0.230519997883147,"d":"0.23"},{"v":0.237672658065853,"d":"0.24"},{"v":0.249701022899595,"d":"0.25"},{"v":1.94251439969552,"d":"1.94"}]
["g2785.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0730652151844507,"d":"0.07"},{"v":0.058876814103976,"d":"0.06"},"X",null,"X"]
["g2786.t1","0046654:0043648",46820,9536,"tetrahydrofolate biosynthetic process:dicarboxylic acid metabolic process","4-amino-4-deoxychorismate synthase activity","plastid","ARATHwo_AT2G28880.1","ADCS encodes a protein that has two functional domains. The N-terminal domain has glutamine amidotransferase activity while the C-terminal domain has aminodeoxychorismate synthase (ADCS) activity. These two domains act together to catalyze the transformation of chorismate to 4-amino-4-deoxychorismate. This reaction is required for 4-aminobenzoate (pABA) production and ultimately for folate biosynthesis. The putative target peptide of ADCS can direct GFP to the chloroplast.","sp|Q6TAS3|ADCS_SOLLC","Aminodeoxychorismate synthase, chloroplastic","gi|147770319|emb|CAN73645.1|",null,null,"x","x",{"v":1.12682255727139,"d":"1.13"},{"v":0.89914221263305,"d":"0.90"},{"v":0.912587253295325,"d":"0.91"},{"v":0.184585930044924,"d":"0.18"}]
["g2787.t1",{"$nulls":8},"sp|Q6GQ23|EOGT_XENLA","EGF domain-specific O-linked N-acetylglucosamine transferase","gi|551656298|ref|XP_005830922.1|",null,null,"x","x",{"v":1.81854048092684,"d":"1.82"},{"v":2.4002010758989,"d":"2.40"},{"v":2.00747083836443,"d":"2.01"},{"v":1.73461248324971,"d":"1.73"}]
["g2788.t1",{"$nulls":8},"sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|374081772|dbj|BAL46523.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.132158772365155,"d":"0.13"},{"v":0,"d":"0.00"},"X"]
["g2789.t1",{"$nulls":6},"ARATHwo_AT5G42620.2","metalloendopeptidases;zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, cell adhesion; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032), Peptidase M8, leishmanolysin (InterPro:IPR001577).","sp|O62446|LMLN_CAEEL","Leishmanolysin-like peptidase","gi|560117531|emb|CDJ97831.1|",null,null,"x","x",{"v":0.675080751475729,"d":"0.68"},{"v":6.99822090646929,"d":"7.00"},{"v":4.15140792416505,"d":"4.15"},{"v":6.08942634301713,"d":"6.09"}]
["g2790.t1","0010162:0016049:0000902:0006635:0048193",8233,"0005829:0005773","seed dormancy process:cell growth:cell morphogenesis:fatty acid beta-oxidation:Golgi vesicle transport","peptidase activity","cytosol:vacuole","ARATHwo_AT4G01610.1","Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7486 Blast hits to 7443 proteins in 692 species: Archae - 63; Bacteria - 158; Metazoa - 3254; Fungi - 4; Plants - 1745; Viruses - 146; Other Eukaryotes - 2116 (source: NCBI BLink).","sp|P07858|CATB_HUMAN","Cathepsin B","gi|116784401|gb|ABK23329.1|",null,"x","x","x",{"v":267.581185990574,"d":"267.58"},{"v":72.2270070747617,"d":"72.23"},{"v":42.8485987251225,"d":"42.85"},{"v":0.308340751278834,"d":"0.31"}]
["g2791.t1",{"$nulls":6},"ARATHwo_AT2G27970.1","CDK-subunit 2 (CKS2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity; INVOLVED IN: cell cycle; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase-subunit 1 (TAIR:AT2G27960.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).","sp|Q9SJJ5|CKS2_ARATH","Cyclin-dependent kinases regulatory subunit 2","gi|727600459|ref|XP_010473196.1|",null,"x","x","x",{"v":21.3005218244517,"d":"21.30"},{"v":19.517859771497,"d":"19.52"},{"v":12.6752554826798,"d":"12.68"},{"v":9.38666240332156,"d":"9.39"}]
["g2792.t1",30244,16866,null,"cellulose biosynthetic process","intramolecular transferase activity",null,"ARATHwo_AT3G02230.1","RGP1 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It appears to be required for proper cell wall formation. rgp1/rgp2 (at5g15650) double mutants have a male gametophyte lethal phenotype. RGP1 fusion proteins can be found in the cytosol and peripherally associated with the Golgi apparatus.","sp|Q6Z4G3|RGP3_ORYSJ","UDP-arabinopyranose mutase 3","gi|302755622|ref|XP_002961235.1|",null,"x","x","x",{"v":79.3122022875811,"d":"79.31"},{"v":327.186042060125,"d":"327.19"},{"v":264.615527871862,"d":"264.62"},{"v":54.6630788630703,"d":"54.66"}]
["g2793.t1",{"$nulls":6},"ARATHwo_AT3G25990.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G13450.1); Has 917 Blast hits to 790 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 0; Plants - 777; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","sp|Q9LU92|TGT4_ARATH","Trihelix transcription factor GT-4","gi|902202171|gb|KNA14186.1|","x",null,"x","x",{"v":0.167534186044405,"d":"0.17"},{"v":0.980240360643887,"d":"0.98"},{"v":0.603660385455842,"d":"0.60"},{"v":0.369944569667166,"d":"0.37"}]
["g2794.t1",{"$nulls":6},"ARATHwo_AT4G04320.1","malonyl-CoA decarboxylase family protein; FUNCTIONS IN: malonyl-CoA decarboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malonyl-CoA decarboxylase (InterPro:IPR007956); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|O95822|DCMC_HUMAN","Malonyl-CoA decarboxylase, mitochondrial","gi|661892214|emb|CDP04440.1|",{"$nulls":4},{"v":0.0732545123348956,"d":"0.07"},{"v":0.804043372380905,"d":"0.80"},{"v":0.567588066796876,"d":"0.57"},{"v":0.885569425447788,"d":"0.89"}]
["g2795.t1",44710,16702,null,"single-organism metabolic process","oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen",{"$nulls":5},"gi|697138273|ref|XP_009623214.1|",null,null,"x","x",{"v":0.942138172071288,"d":"0.94"},{"v":1.02143133915274,"d":"1.02"},{"v":1.89423212240923,"d":"1.89"},{"v":3.24349508565433,"d":"3.24"}]
["g2796.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",null,null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0.081732478089153,"d":"0.08"},{"v":0.899547217377857,"d":"0.90"},{"v":3.79946922243076,"d":"3.80"},{"v":1.0972035847316,"d":"1.10"},"X"]
["g2797.t1","0006301:0015031",8565,"0005905:0005794","postreplication repair:protein transport","protein transporter activity","coated pit:Golgi apparatus","ARATHwo_AT2G19790.1","SNARE-like superfamily protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, protein transport; LOCATED IN: clathrin vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G47830.1); Has 1921 Blast hits to 1920 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 856; Fungi - 405; Plants - 316; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).","sp|O82201|AP4S_ARATH","AP-4 complex subunit sigma","gi|168066797|ref|XP_001785318.1|",null,null,"x","x",{"v":10.2972089341302,"d":"10.30"},{"v":10.9869251088194,"d":"10.99"},{"v":3.6816800284488,"d":"3.68"},{"v":1.07371558756134,"d":"1.07"}]
["g2798.t1",null,3824,9536,null,"catalytic activity","plastid","ARATHwo_AT2G17265.1","Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts. Mutants are susceptible to downy mildew fungus Hyaloperonospora parasitica.","sp|Q8L7R2|KHSE_ARATH","Homoserine kinase","gi|168056127|ref|XP_001780073.1|",null,null,"x","x",{"v":33.4240446839393,"d":"33.42"},{"v":15.273503246353,"d":"15.27"},{"v":6.36528902411603,"d":"6.37"},{"v":0.659089528455229,"d":"0.66"}]
["g2799.t1",{"$nulls":15},{"v":0.111390538183756,"d":"0.11"},{"v":0.286993486157946,"d":"0.29"},{"v":0.505519835706432,"d":"0.51"},{"v":0,"d":"0.00"}]
["g55279.t1",{"$nulls":13},"x","x",{"v":19.8694374304217,"d":"19.87"},{"v":2.28085030853205,"d":"2.28"},{"v":1.10851130429732,"d":"1.11"},{"v":0.0799073653059867,"d":"0.08"}]
["g55280.t1"]
["g55281.t1",{"$nulls":13},"x","x",{"v":8.64124248768246,"d":"8.64"},{"v":3.72106546645853,"d":"3.72"},{"v":0.609925133589511,"d":"0.61"},{"v":0.267595461837263,"d":"0.27"}]
["g55282.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|78183249|emb|CAJ00277.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0402300360679443,"d":"0.04"},{"v":0.0319855904159151,"d":"0.03"},{"v":0.101597145402458,"d":"0.10"},"X"]
["g55283.t1",{"$nulls":13},"x","x",{"v":0.095864092765797,"d":"0.10"},{"v":0.537514977608857,"d":"0.54"},{"v":3.09846443872371,"d":"3.10"},{"v":0.300201388950849,"d":"0.30"}]
["g55284.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.168182831111301,"d":"0.17"},{"v":0,"d":"0.00"},"X"]
["g55285.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.334543149503033,"d":"0.33"}]
["g55286.t1",{"$nulls":6},"ARATHwo_AT5G51380.1","RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G51370.2); Has 3650 Blast hits to 2073 proteins in 189 species: Archae - 0; Bacteria - 108; Metazoa - 1506; Fungi - 242; Plants - 1431; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).","sp|Q9FGN3|FB290_ARATH","F-box protein At5g51380","gi|168026489|ref|XP_001765764.1|",null,null,"x","x",{"v":0.14541876611542,"d":"0.15"},{"v":2.35013205922053,"d":"2.35"},{"v":0.126825431980332,"d":"0.13"},{"v":9.43735765161301,"d":"9.44"}]
["g55287.t1",{"$nulls":15},{"v":0.1282284303993,"d":"0.13"},{"v":0.072114548151249,"d":"0.07"},{"v":0.0673643732464157,"d":"0.07"},{"v":0,"d":"0.00"},"X",null,"X"]
["g55288.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|O92815|POL_WDSV","Gag-Pol polyprotein","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0703083533821432,"d":"0.07"},{"v":0.0431111873536657,"d":"0.04"},{"v":0,"d":"0.00"},"X"]
["g55289.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|4235644|gb|AAD13304.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.194004391346427,"d":"0.19"},{"v":0.45764138120139,"d":"0.46"},{"v":0.0789939158886317,"d":"0.08"},"X"]
["g55290.t2",{"$nulls":8},"sp|O94248|MDN1_SCHPO","Midasin","gi|918704879|ref|WP_052573879.1|",null,null,"x","x",{"v":1.9002464045827,"d":"1.90"},{"v":22.9550679988365,"d":"22.96"},{"v":24.6119894266106,"d":"24.61"},{"v":9.54019109344229,"d":"9.54"}]
["g55290.t1",{"$nulls":6},"ARATHwo_AT4G33980.2","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3).",null,null,"gi|918704879|ref|WP_052573879.1|",{"$nulls":4},{"v":1.9002464045827,"d":"1.90"},{"v":22.9550679988365,"d":"22.96"},{"v":24.6119894266106,"d":"24.61"},{"v":9.54019109344229,"d":"9.54"}]
["g55291.t1",{"$nulls":8},"sp|Q9KST5|TRPC_VIBCH","Tryptophan biosynthesis protein TrpCF",{"$nulls":9},"X"]
["g55292.t1",{"$nulls":15},{"v":0.0460715237571163,"d":"0.05"},{"v":0.812081192653732,"d":"0.81"},{"v":0,"d":"0.00"},{"v":3.56416128245843,"d":"3.56"}]
["g55293.t1"]
["g55294.t1",{"$nulls":10},"gi|168002008|ref|XP_001753706.1|"]
["g55295.t1",{"$nulls":19},"X",null,"X"]
["g55296.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0524003653221127,"d":"0.05"},{"v":0,"d":"0.00"},{"v":3.89146946886832,"d":"3.89"}]
["g55297.t1","0007275:0007165","0016301:0005488",null,"multicellular organismal development:signal transduction","kinase activity:binding",null,"ARATHwo_AT5G48740.1","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G67720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|C0LGV0|Y5487_ARATH","Probable LRR receptor-like serine/threonine-protein kinase At5g48740","gi|242075882|ref|XP_002447877.1|",null,null,"x","x",{"v":2.83634056447586,"d":"2.84"},{"v":3.67917391280983,"d":"3.68"},{"v":0.12875612332998,"d":"0.13"},{"v":3.81479491269475,"d":"3.81"}]
["g55298.t1",{"$nulls":8},"sp|Q91DM0|POLG_PVCV1","Genome polyprotein","gi|4432807|gb|AAD20658.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.087211439573004,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g80692.t1",{"$nulls":8},"sp|P08003|PDIA4_MOUSE","Protein disulfide-isomerase A4",{"$nulls":5},{"v":0.288812333427316,"d":"0.29"},{"v":2.925171881587,"d":"2.93"},{"v":20.8782868198683,"d":"20.88"},{"v":5.123947621915,"d":"5.12"}]
["g55299.t1","0034227:0002098:0032447","0005524:0016779:0000049",5737,"tRNA thio-modification:tRNA wobble uridine modification:protein urmylation","ATP binding:nucleotidyltransferase activity:tRNA binding","cytoplasm","ARATHwo_AT1G76170.1","2-thiocytidine tRNA biosynthesis protein, TtcA; FUNCTIONS IN: ATP binding; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Uncharacterised protein family UPF0021, C-terminal (InterPro:IPR000541), PP-loop (InterPro:IPR011063), 2-thiocytidine tRNA biosynthesis protein, TtcA (InterPro:IPR012089); BEST Arabidopsis thaliana protein match is: repressor of lrx1 (TAIR:AT2G44270.1); Has 4635 Blast hits to 4558 proteins in 1674 species: Archae - 313; Bacteria - 3429; Metazoa - 162; Fungi - 209; Plants - 60; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).","sp|O64862|CTU1_ARATH","Cytoplasmic tRNA 2-thiolation protein 1","gi|743833275|ref|XP_010935219.1|",null,null,"x","x",{"v":5.59834162330677,"d":"5.60"},{"v":3.12769494747022,"d":"3.13"},{"v":1.79273299587356,"d":"1.79"},{"v":1.14615444059219,"d":"1.15"}]
["g55300.t1",8152,"0003676:0016853:0000166",null,"metabolic process","nucleic acid binding:isomerase activity:nucleotide binding",null,"ARATHwo_AT1G07350.1","Encodes a serine/arginine rich-like protein, SR45a. Involved in the regulation of stress-responsive alternative splicing.","sp|Q84TH4|SR45A_ARATH","Serine/arginine-rich splicing factor SR45a","gi|695038012|ref|XP_009406507.1|",null,null,"x","x",{"v":4.0700462208655,"d":"4.07"},{"v":17.1199119708514,"d":"17.12"},{"v":13.8848973350516,"d":"13.88"},{"v":8.70242711041712,"d":"8.70"}]
["g55301.t1",{"$nulls":15},{"v":1.52717733107826,"d":"1.53"},{"v":5.46069295570143,"d":"5.46"},{"v":5.1727385551207,"d":"5.17"},{"v":2.8801942770707,"d":"2.88"}]
["g55302.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.143192473250036,"d":"0.14"},{"v":0.149345449046631,"d":"0.15"},"X",null,"X"]
["g55303.t1"]
["g55304.t1","0044710:0006259:0032392:0065007:0007126","0003678:0097159:1901363",null,"single-organism metabolic process:DNA metabolic process:DNA geometric change:biological regulation:meiosis","DNA helicase activity:organic cyclic compound binding:heterocyclic compound binding",null,"ARATHwo_AT4G25120.1","Encodes a homolog of the yeast SRS2 (Suppressor of RAD Six-screen mutant 2) helicase. The Arabidopsis SRS2 is a functional 3?- to 5?-helicase. Biochemical studies show that SRS2 disrupts recombinogenic DNA intermediates and facilitates single strand annealing.","sp|D1KF50|SRS2L_ARATH","ATP-dependent DNA helicase SRS2-like protein At4g25120","gi|168006903|ref|XP_001756148.1|",null,null,"x","x",{"v":0.789404371016974,"d":"0.79"},{"v":0.486413437440593,"d":"0.49"},{"v":0.65099168491495,"d":"0.65"},{"v":0.18808328860604,"d":"0.19"}]
["g55305.t1","0050896:0006310:0033044:0000723:0007059:0007127:0032392","0003678:0097159:1901363",null,"response to stimulus:DNA recombination:regulation of chromosome organization:telomere maintenance:chromosome segregation:meiosis I:DNA geometric change","DNA helicase activity:organic cyclic compound binding:heterocyclic compound binding",{"$nulls":5},"gi|567889080|ref|XP_006437062.1|",null,null,"x","x",{"v":0.578345896670763,"d":"0.58"},{"v":0.156403520892145,"d":"0.16"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g80725.t1"]
["g55332.t1","0009957:0006275:0000911:0051567:0008283:0006265:0051225:0006342:0006306:0051726:0010583:0016572:0009909:0006270","0046872:0003677:0005524:0003918",5634,"epidermal cell fate specification:regulation of DNA replication:cytokinesis by cell plate formation:histone H3-K9 methylation:cell proliferation:DNA topological change:spindle assembly:chromatin silencing:DNA methylation:regulation of cell cycle:response to cyclopentenone:histone phosphorylation:regulation of flower development:DNA replication initiation","metal ion binding:DNA binding:ATP binding:DNA topoisomerase type II (ATP-hydrolyzing) activity","nucleus","ARATHwo_AT3G23890.1","Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.","sp|P30182|TOP2_ARATH","DNA topoisomerase 2","gi|168033077|ref|XP_001769043.1|",null,null,"x","x",{"v":0.14070013238482,"d":"0.14"},{"v":0.213922751651608,"d":"0.21"},{"v":7.1399574394016,"d":"7.14"},{"v":2.10247667742964,"d":"2.10"}]
["g55333.t1",6431,"0004825:0005524:0000049",5737,"methionyl-tRNA aminoacylation","methionine-tRNA ligase activity:ATP binding:tRNA binding","cytoplasm","ARATHwo_AT4G13780.1","methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; FUNCTIONS IN: methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, methionyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G40660.1); Has 17985 Blast hits to 17920 proteins in 2983 species: Archae - 503; Bacteria - 10276; Metazoa - 591; Fungi - 596; Plants - 228; Viruses - 3; Other Eukaryotes - 5788 (source: NCBI BLink).","sp|Q9ZTS1|SYM_ORYSJ","Probable methionine--tRNA ligase","gi|661885187|emb|CDP11143.1|",null,null,"x","x",{"v":42.9722448310049,"d":"42.97"},{"v":49.9942989463875,"d":"49.99"},{"v":21.261731426118,"d":"21.26"},{"v":21.6592675667577,"d":"21.66"}]
["g55334.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|147810925|emb|CAN71787.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0381160200833847,"d":"0.04"},{"v":0.607611717387599,"d":"0.61"},{"v":0.0644941072759197,"d":"0.06"},"X"]
["g55335.t1",{"$nulls":13},"x","x",{"v":6.56920561385645,"d":"6.57"},{"v":7.82952775504089,"d":"7.83"},{"v":3.78421436044196,"d":"3.78"},{"v":195.904622735126,"d":"195.90"}]
["g55336.t1",{"$nulls":15},{"v":0.735885183724042,"d":"0.74"},{"v":0.448763597197881,"d":"0.45"},{"v":0.38361322218611,"d":"0.38"},{"v":28.2969714680014,"d":"28.30"},null,"X","X"]
["g55337.t1",{"$nulls":8},"sp|Q00962|POL_CAMVN","Enzymatic polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0949483914700221,"d":"0.09"},{"v":0.362670642385793,"d":"0.36"},{"v":0.303376834186497,"d":"0.30"},null,"X"]
["g55338.t1",{"$nulls":8},"sp|P0CT43|TF28_SCHPO","Transposon Tf2-8 polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.301595851636021,"d":"0.30"},{"v":0.345858407694707,"d":"0.35"},{"v":1.35260476087576,"d":"1.35"},{"v":0.554815362573887,"d":"0.55"},null,"X"]
["g55339.t1",{"$nulls":15},{"v":0.278566357485003,"d":"0.28"},{"v":1.09459226810049,"d":"1.09"},{"v":15.1909529829849,"d":"15.19"},{"v":0.347416971021104,"d":"0.35"}]
["g55340.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|729410986|ref|XP_010556248.1|",{"$nulls":4},{"v":0.0560167946599266,"d":"0.06"},{"v":0.807192452110321,"d":"0.81"},{"v":2.85721921064854,"d":"2.86"},{"v":1.07922008549264,"d":"1.08"},"X"]
["g55341.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.130609967917212,"d":"0.13"},{"v":1.05977866105768,"d":"1.06"},{"v":4.00719631510181,"d":"4.01"},{"v":1.01166414993333,"d":"1.01"},"X"]
["g55342.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.244012029121624,"d":"0.24"},{"v":1.68351983946474,"d":"1.68"},{"v":0.38331185247207,"d":"0.38"},"X",null,"X"]
["g55343.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.068217101617395,"d":"0.07"},{"v":0.676781623047151,"d":"0.68"},{"v":0.39536360133674,"d":"0.40"}]
["g55344.t1",{"$nulls":8},"sp|Q5R7K7|SENP2_PONAB","Sentrin-specific protease 2",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.231317736341983,"d":"0.23"},{"v":0.915003022713339,"d":"0.92"},{"v":0.495307292422914,"d":"0.50"}]
["g55345.t1",{"$nulls":8},"sp|O92956|POL_RSVSB","Gag-Pro-Pol polyprotein","gi|702455653|ref|XP_010026793.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.171355376063598,"d":"0.17"},{"v":4.45373651719777,"d":"4.45"},{"v":0.492739698733881,"d":"0.49"},"X"]
["g55346.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|861617032|gb|KMQ86489.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0720068634083183,"d":"0.07"},{"v":0.883009265633047,"d":"0.88"},{"v":0.144093642378754,"d":"0.14"},null,"X"]
["g55347.t1",{"$nulls":10},"gi|302820426|ref|XP_002991880.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.335153543090565,"d":"0.34"},{"v":0,"d":"0.00"}]
["g55348.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|727651886|ref|XP_010496662.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.096647333983459,"d":"0.10"},{"v":1.56709592922274,"d":"1.57"},{"v":0,"d":"0.00"},"X"]
["g55349.t1",{"$nulls":8},"sp|P63128|POK9_HUMAN","Endogenous retrovirus group K member 9 Pol protein","gi|813213903|dbj|GAO47244.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.94251427715521,"d":"1.94"},{"v":0,"d":"0.00"},"X"]
["g55350.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|77556305|gb|ABA99101.1|",{"$nulls":4},{"v":0.267143887542846,"d":"0.27"},{"v":0.394675612662111,"d":"0.39"},{"v":5.13766445246918,"d":"5.14"},{"v":0.737764720456177,"d":"0.74"},"X"]
["g55351.t1",{"$nulls":10},"gi|747106565|ref|XP_011101577.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.263317831781519,"d":"0.26"},{"v":0,"d":"0.00"},null,"X"]
["g55352.t1",{"$nulls":6},"ARATHwo_AT5G52450.1","MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G34360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FHB6|DTX16_ARATH","Protein DETOXIFICATION 16","gi|125531545|gb|EAY78110.1|",null,"x",null,"x",{"v":19.9914905403235,"d":"19.99"},{"v":15.4775037574649,"d":"15.48"},{"v":60.1258277545793,"d":"60.13"},{"v":0.82443034053487,"d":"0.82"}]
["g55353.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.165095778197769,"d":"0.17"},{"v":0.202753603219916,"d":"0.20"},{"v":0.265528205393596,"d":"0.27"}]
["g55354.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.205870690352391,"d":"0.21"},{"v":0.580025613736615,"d":"0.58"},"X",null,"X"]
["g55355.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|923597104|ref|XP_013739946.1|"]
["g55356.t1"]
["g55357.t1",{"$nulls":10},"gi|302809745|ref|XP_002986565.1|"]
["g55358.t1",{"$nulls":10},"gi|302809745|ref|XP_002986565.1|"]
["g2803.t1"]
["g2819.t1",{"$nulls":8},"sp|Q8IID4|DYHC2_PLAF7","Dynein heavy chain-like protein PF11_0240"]
["g2834.t1",{"$nulls":15},{"v":0.0269023268775491,"d":"0.03"},{"v":0.0361222815107203,"d":"0.04"},{"v":0.0287377653182624,"d":"0.03"},{"v":0.0670337700078727,"d":"0.07"},null,"X","X"]
["g2851.t1",55114,"0042802:0050660:0016972",5739,"oxidation-reduction process","identical protein binding:flavin adenine dinucleotide binding:thiol oxidase activity","mitochondrion","ARATHwo_AT1G49880.1","Encodes Erv1, a component of the mitochondrial intermembrane space assembly machinery involved in the import pathway of the small intermembrane space proteins. It contains a Cys-X-Cys shuttle disulfide and oxidizes thioredoxin in vitro.","sp|Q8GXX0|ERV1_ARATH","FAD-linked sulfhydryl oxidase ERV1","gi|294460087|gb|ADE75626.1|",{"$nulls":4},{"v":5.06835944485136,"d":"5.07"},{"v":6.59345168830332,"d":"6.59"},{"v":3.69445383080073,"d":"3.69"},{"v":5.60285094141452,"d":"5.60"}]
["g55369.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.121995798800437,"d":"0.12"},{"v":0,"d":"0.00"},{"v":0.320238251438298,"d":"0.32"},"X",null,"X"]
["g55483.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.095788071986265,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0.164724753602499,"d":"0.16"}]
["g2857.t1",{"$nulls":11},"x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.065280308217647,"d":"0.07"},{"v":0,"d":"0.00"}]
["g2873.t1",{"$nulls":19},"X",null,"X"]
["g2891.t1"]
["g2908.t1"]
["g2924.t1"]
["g80854.t1",{"$nulls":6},"ARATHwo_AT3G02280.1","Flavodoxin family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), FAD-binding, type 1 (InterPro:IPR003097), Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: P450 reductase 1 (TAIR:AT4G24520.1); Has 7053 Blast hits to 6598 proteins in 1587 species: Archae - 9; Bacteria - 3832; Metazoa - 1042; Fungi - 865; Plants - 492; Viruses - 0; Other Eukaryotes - 813 (source: NCBI BLink).","sp|Q6NPS8|NDOR1_ARATH","NADPH-dependent diflavin oxidoreductase 1","gi|674959559|emb|CDX74264.1|",null,null,"x","x",{"v":11.8898054773716,"d":"11.89"},{"v":10.8589763495251,"d":"10.86"},{"v":4.80942555149215,"d":"4.81"},{"v":10.2452268177131,"d":"10.25"}]
["g55634.t1"]
["g2946.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT3G58690.1","Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink).","sp|O65530|PEK14_ARATH","Proline-rich receptor-like protein kinase PERK14","gi|356498787|ref|XP_003518230.1|",null,null,"x","x",{"v":0.661892403667522,"d":"0.66"},{"v":38.5979888254022,"d":"38.60"},{"v":3.46007577765366,"d":"3.46"},{"v":0.0216286058924048,"d":"0.02"}]
["g2963.t1"]
["g2983.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.595870127855012,"d":"0.60"},{"v":1.10627306043957,"d":"1.11"},{"v":0.35507829867749,"d":"0.36"},"X",null,"X"]
["g2999.t1",{"$nulls":8},"sp|Q91372|DDX4_XENLA","Probable ATP-dependent RNA helicase DDX4","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.133210909171825,"d":"0.13"},{"v":0.475526483794231,"d":"0.48"},{"v":0.0523218002256157,"d":"0.05"},"X"]
["g55764.t1",{"$nulls":15},{"v":0.126666814679848,"d":"0.13"},{"v":0.976479566587722,"d":"0.98"},{"v":0.617632262802533,"d":"0.62"},{"v":0,"d":"0.00"}]
["g55781.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.128009587006868,"d":"0.13"},{"v":0.390056137410445,"d":"0.39"},"X",null,"X"]
["g55822.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|406701213|gb|EKD04365.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0642896362621247,"d":"0.06"},{"v":0.338741471264621,"d":"0.34"},{"v":0.0755999056338893,"d":"0.08"},"X"]
["g3023.t1","0071704:0044710",16878,44424,"organic substance metabolic process:single-organism metabolic process","acid-thiol ligase activity","intracellular part","ARATHwo_AT3G16170.1","AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity, AMP binding; INVOLVED IN: metabolic process; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT3G48990.1); Has 81919 Blast hits to 74550 proteins in 3809 species: Archae - 1169; Bacteria - 53765; Metazoa - 3235; Fungi - 4485; Plants - 2227; Viruses - 1; Other Eukaryotes - 17037 (source: NCBI BLink).","sp|Q8H151|AAE13_ARATH","Malonate--CoA ligase","gi|734321557|gb|KHN04218.1|",null,null,"x","x",{"v":0.494139360335897,"d":"0.49"},{"v":1.4801356670815,"d":"1.48"},{"v":0.820642284473991,"d":"0.82"},{"v":1.30861041684992,"d":"1.31"}]
["g3035.t1",{"$nulls":8},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|38346992|emb|CAD40278.2|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0841018960907943,"d":"0.08"},{"v":0.211103142410717,"d":"0.21"},{"v":0.283928552961805,"d":"0.28"},"X"]
["g3052.t1",{"$nulls":6},"ARATHwo_AT1G43560.1","thioredoxin Y2 (ty2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 23180 Blast hits to 21538 proteins in 3021 species: Archae - 298; Bacteria - 11849; Metazoa - 3466; Fungi - 1262; Plants - 2020; Viruses - 15; Other Eukaryotes - 4270 (source: NCBI BLink).","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":8.20821833797446,"d":"8.21"},{"v":0.560033071202187,"d":"0.56"},{"v":0.279640299910729,"d":"0.28"},{"v":0.629458543571132,"d":"0.63"},null,"X"]
["g3069.t1",{"$nulls":6},"ARATHwo_AT2G33290.1","Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR.","sp|O22781|SUVH2_ARATH","Histone-lysine N-methyltransferase family member SUVH2","gi|769818176|ref|XP_011621748.1|"]
["g3087.t1",{"$nulls":8},"sp|Q5R6X7|CBX3_PONAB","Chromobox protein homolog 3","gi|630203480|ref|XP_007852586.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0874196604221417,"d":"0.09"},{"v":0.613686620307403,"d":"0.61"},{"v":0,"d":"0.00"},null,"X"]
["g55877.t1",{"$nulls":8},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0111533402866519,"d":"0.01"},{"v":0.0643278797654368,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g55944.t1"]
["g3104.t1",{"$nulls":6},"ARATHwo_AT4G29780.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|340377501|ref|XP_003387268.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.327315685901925,"d":"0.33"},"X"]
["g3121.t1",{"$nulls":15},{"v":2.37126995853399,"d":"2.37"},{"v":9.78898222934826,"d":"9.79"},{"v":9.54356575499413,"d":"9.54"},{"v":1.9736423024957,"d":"1.97"}]
["g3138.t1","0006096:0046835:0006002","0003872:0047334:0005524",null,"glycolysis:carbohydrate phosphorylation:fructose 6-phosphate metabolic process","6-phosphofructokinase activity:diphosphate-fructose-6-phosphate 1-phosphotransferase activity:ATP binding",null,"ARATHwo_AT4G04040.1","maternal effect embryo arrest 51 (MEE51); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT1G12000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P21343|PFPB_SOLTU","Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta","gi|685360119|ref|XP_009114586.1|",null,"x","x","x",{"v":21.7441723750516,"d":"21.74"},{"v":17.3027527542167,"d":"17.30"},{"v":4.60302727436679,"d":"4.60"},{"v":3.51260148044807,"d":"3.51"}]
["g56035.t1",45859,"0004674:0005524:0008603","0031514:0005952","regulation of protein kinase activity","protein serine/threonine kinase activity:ATP binding:cAMP-dependent protein kinase regulator activity","motile cilium:cAMP-dependent protein kinase complex","ARATHwo_AT4G35370.1","Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G18905.1); Has 35855 Blast hits to 22159 proteins in 637 species: Archae - 32; Bacteria - 3793; Metazoa - 14224; Fungi - 8619; Plants - 4898; Viruses - 0; Other Eukaryotes - 4289 (source: NCBI BLink).","sp|Q16959|DYI2_HELCR","Dynein intermediate chain 2, ciliary","gi|303272603|ref|XP_003055663.1|",{"$nulls":4},{"v":0.385061213568565,"d":"0.39"},{"v":0.163905595220876,"d":"0.16"},{"v":7.25692148439459,"d":"7.26"},{"v":0.268906773747757,"d":"0.27"}]
["g56047.t1",{"$nulls":10},"gi|599117036|ref|XP_007386384.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.538051721328136,"d":"0.54"},null,"X"]
["g3150.t1",{"$nulls":6},"ARATHwo_AT2G03390.1","uvrB/uvrC motif-containing protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hemimethylated DNA-binding domain (InterPro:IPR011722), UvrB/UvrC protein (InterPro:IPR001943); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",null,null,"gi|119195523|ref|XP_001248365.1|",{"$nulls":4},{"v":17.4826883767071,"d":"17.48"},{"v":3.48617927365863,"d":"3.49"},{"v":12.8940721808177,"d":"12.89"},{"v":14.2385710975763,"d":"14.24"}]
["g3167.t1",8152,16787,null,"metabolic process","hydrolase activity",null,"ARATHwo_AT5G10700.1","Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity, protein tyrosine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, translation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833), Protein-tyrosine phosphatase, low molecular weight (InterPro:IPR017867); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q3SZ85|PTRD1_BOVIN","Putative peptidyl-tRNA hydrolase PTRHD1","gi|302813866|ref|XP_002988618.1|",null,"x","x","x",{"v":22.1898258139524,"d":"22.19"},{"v":10.0862352526491,"d":"10.09"},{"v":3.69133114933872,"d":"3.69"},{"v":3.29216671986171,"d":"3.29"}]
["g3184.t1",null,16779,16020,null,"nucleotidyltransferase activity","membrane","ARATHwo_AT2G45150.1","cytidinediphosphate diacylglycerol synthase 4 (CDS4); CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 5 (TAIR:AT3G60620.1); Has 7499 Blast hits to 7494 proteins in 2620 species: Archae - 2; Bacteria - 5196; Metazoa - 180; Fungi - 137; Plants - 143; Viruses - 0; Other Eukaryotes - 1841 (source: NCBI BLink).","sp|Q94A03|CDS4_ARATH","Phosphatidate cytidylyltransferase 4, chloroplastic","gi|168029769|ref|XP_001767397.1|",{"$nulls":4},{"v":0.980940331502104,"d":"0.98"},{"v":2.39388807148738,"d":"2.39"},{"v":237.120815265239,"d":"237.12"},{"v":5.51913347592452,"d":"5.52"}]
["g3185.t1",{"$nulls":6},"ARATHwo_AT1G36990.1","unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink).",null,null,"gi|694381937|ref|XP_009367009.1|",null,null,"x","x",{"v":7.26688334198861,"d":"7.27"},{"v":14.4441615914743,"d":"14.44"},{"v":17.8288975403541,"d":"17.83"},{"v":31.5748787459863,"d":"31.57"}]
["g56393.t1","0006783:0006281","0003676:0008026:0005524",null,"heme biosynthetic process:DNA repair","nucleic acid binding:ATP-dependent helicase activity:ATP binding",null,"ARATHwo_AT3G02060.1","DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31166 Blast hits to 30948 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1558; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).","sp|Q55750|MFD_SYNY3","Transcription-repair-coupling factor","gi|302763495|ref|XP_002965169.1|",{"$nulls":4},{"v":15.179824490763,"d":"15.18"},{"v":6.48358273840679,"d":"6.48"},{"v":5.44691971987794,"d":"5.45"},{"v":5.93436741953193,"d":"5.93"},null,"X"]
["g56395.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0641455785068933,"d":"0.06"},{"v":0.139687960888162,"d":"0.14"},{"v":0,"d":"0.00"}]
["g3212.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0996081199562967,"d":"0.10"},{"v":0.45292440380242,"d":"0.45"},{"v":0,"d":"0.00"},"X"]
["g3229.t1",{"$nulls":8},"sp|P45508|YFAL_ECOLI","Uncharacterized protein YfaL",{"$nulls":5},{"v":6.75800925103877,"d":"6.76"},{"v":1.1230453388511,"d":"1.12"},{"v":0.736845396944565,"d":"0.74"},{"v":0.148260551206285,"d":"0.15"}]
["g3247.t1","0006333:0006278:0006508:0006310","0046872:0003964:0003677:0003682:0003723:0004190",null,"chromatin assembly or disassembly:RNA-dependent DNA replication:proteolysis:DNA recombination","metal ion binding:RNA-directed DNA polymerase activity:DNA binding:chromatin binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|56407688|gb|AAV88076.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.536898900983992,"d":"0.54"},{"v":3.59519050765988,"d":"3.60"},{"v":2.2577582343406,"d":"2.26"},"X"]
["g3266.t1"]
["g3283.t1",{"$nulls":6},"ARATHwo_AT1G01970.1","Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G19520.1); Has 15559 Blast hits to 6864 proteins in 176 species: Archae - 0; Bacteria - 16; Metazoa - 92; Fungi - 19; Plants - 15148; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).","sp|Q9LPC4|PPR1_ARATH","Pentatricopeptide repeat-containing protein At1g01970","gi|115529193|dbj|BAF34329.1|",null,null,"x","x",{"v":2.88296349943175,"d":"2.88"},{"v":2.97774261862961,"d":"2.98"},{"v":3.30261583074598,"d":"3.30"},{"v":2.26187124755737,"d":"2.26"}]
["g56528.t1"]
["g56602.t1",{"$nulls":6},"ARATHwo_AT1G65700.3","Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649).","sp|Q8VYI0|LSM8_ARATH","Sm-like protein LSM8","gi|225454559|ref|XP_002263175.1|",null,null,"x","x",{"v":8.22929645842421,"d":"8.23"},{"v":12.4062691437835,"d":"12.41"},{"v":5.83118252594724,"d":"5.83"},{"v":7.3549406060042,"d":"7.35"}]
["g3299.t1",5978,"0004553:0043169:0003844",null,"glycogen biosynthetic process","hydrolase activity, hydrolyzing O-glycosyl compounds:cation binding:1,4-alpha-glucan branching enzyme activity",null,"ARATHwo_AT5G03650.1","Encodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves.","sp|Q01401|GLGB_ORYSJ","1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic","gi|731427696|ref|XP_010664077.1|",null,null,"x","x",{"v":1.63183958051756,"d":"1.63"},{"v":3.78982293436408,"d":"3.79"},{"v":4.6906293531014,"d":"4.69"},{"v":10.0013848773889,"d":"10.00"}]
["g3321.t1","0019684:0035436:0019344:0035304",71917,"0016021:0009941:0009534","photosynthesis, light reaction:triose phosphate transmembrane transport:cysteine biosynthetic process:regulation of protein dephosphorylation","triose-phosphate transmembrane transporter activity","integral to membrane:chloroplast envelope:chloroplast thylakoid","ARATHwo_AT5G46110.4","Encodes a chloroplast triose phosphate / 3-phosphoglycerate translocator that transports triose phosphates derived from the Calvin cycle in the stroma to the cytosol for use in sucrose synthesis and other biosynthetic processes. A tpt mutant has altered acclimation responses.","sp|P49131|TPT_FLAPR","Triose phosphate/phosphate translocator, chloroplastic","gi|168066577|ref|XP_001785212.1|",null,"x","x","x",{"v":351.890373021016,"d":"351.89"},{"v":29.4101812559129,"d":"29.41"},{"v":30.0519813718397,"d":"30.05"},{"v":0,"d":"0.00"}]
["g3334.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink)."]
["g56617.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|657986524|ref|XP_008385391.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.146922166594356,"d":"0.15"},{"v":0.0282568893031234,"d":"0.03"},{"v":0,"d":"0.00"},"X"]
["g56632.t1",{"$nulls":6},"ARATHwo_AT3G18570.1","Oleosin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: Oleosin family protein (TAIR:AT1G48990.1); Has 346 Blast hits to 346 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 346; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",{"$nulls":7},{"v":2.05368064617106,"d":"2.05"},{"v":88.5780634816748,"d":"88.58"},{"v":1.06283389677227,"d":"1.06"},{"v":486.930138105451,"d":"486.93"}]
["g3506.t1",{"$nulls":6},"ARATHwo_AT5G62810.1","mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2)","sp|Q9FXT6|PEX14_ARATH","Peroxisomal membrane protein PEX14",null,null,"x","x","x"]
["g3522.t1",{"$nulls":6},"ARATHwo_AT5G27490.1","Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G05280.1); Has 530 Blast hits to 529 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 113; Plants - 90; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).","sp|Q54TS4|YIPF1_DICDI","Protein YIPF1 homolog","gi|168053125|ref|XP_001778988.1|",null,"x","x","x",{"v":23.4638468426999,"d":"23.46"},{"v":13.5248323558756,"d":"13.52"},{"v":6.79944366425029,"d":"6.80"},{"v":15.5321511658822,"d":"15.53"}]
["g3550.t1",{"$nulls":15},{"v":0.433926967339388,"d":"0.43"},{"v":0.319975111417268,"d":"0.32"},{"v":1.13364700103971,"d":"1.13"},{"v":0,"d":"0.00"}]
["g3557.t1",null,"0003677:0003682",null,null,"DNA binding:chromatin binding",null,"ARATHwo_AT2G03500.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT1G68670.1); Has 20396 Blast hits to 7290 proteins in 193 species: Archae - 14; Bacteria - 20; Metazoa - 401; Fungi - 967; Plants - 1637; Viruses - 8; Other Eukaryotes - 17349 (source: NCBI BLink).","sp|Q9SNB4|PCL1_ARATH","Transcription factor LUX","gi|224088073|ref|XP_002308314.1|",null,null,"x","x",{"v":26.54838656655,"d":"26.55"},{"v":32.5411569916947,"d":"32.54"},{"v":58.2331213509294,"d":"58.23"},{"v":39.058775226992,"d":"39.06"}]
["g56709.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.132998407542107,"d":"0.13"},{"v":0,"d":"0.00"},null,"X","X"]
["g56745.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|727651886|ref|XP_010496662.1|",{"$nulls":4},{"v":0.473461078321586,"d":"0.47"},{"v":0.585805996307874,"d":"0.59"},{"v":26.3836471841434,"d":"26.38"},{"v":1.89145598051157,"d":"1.89"},null,"X"]
["g56841.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|595840170|ref|XP_007207981.1|",null,null,"x","x",{"v":0.0821244670628206,"d":"0.08"},{"v":0.227798787461327,"d":"0.23"},{"v":0.671808723189796,"d":"0.67"},{"v":0,"d":"0.00"},null,"X"]
["g4215.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|671688033|emb|CDS12578.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.739370400585289,"d":"0.74"},{"v":3.03976148655536,"d":"3.04"},{"v":1.74467838389688,"d":"1.74"},"X"]
["g4236.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7TD08|POL_CYLCV","Enzymatic polyprotein","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0.0486105276534837,"d":"0.05"},{"v":0.123776494576039,"d":"0.12"},{"v":2.54104172454223,"d":"2.54"},{"v":0.471146669251321,"d":"0.47"},"X"]
["g4253.t1",{"$nulls":15},{"v":0.0588286532693391,"d":"0.06"},{"v":0.0976491588302623,"d":"0.10"},{"v":2.35284159826088,"d":"2.35"},{"v":0,"d":"0.00"}]
["g4270.t1",{"$nulls":6},"ARATHwo_AT5G64090.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q5ZM13|HYCCI_CHICK","Hyccin","gi|661899472|emb|CDO97466.1|",null,null,"x","x",{"v":29.0153142629158,"d":"29.02"},{"v":30.2573784760288,"d":"30.26"},{"v":24.9862197536544,"d":"24.99"},{"v":8.65105518167153,"d":"8.65"}]
["g4288.t1",{"$nulls":15},{"v":0.106739650944467,"d":"0.11"},{"v":0.197546496534718,"d":"0.20"},{"v":0.269544851259138,"d":"0.27"},{"v":0,"d":"0.00"},null,"X","X"]
["g4304.t1",{"$nulls":10},"gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0.0666228890199343,"d":"0.07"},{"v":0.301763430867335,"d":"0.30"},{"v":0.948891438547905,"d":"0.95"},{"v":0.331699520339594,"d":"0.33"}]
["g4324.t1",{"$nulls":15},{"v":0.0246660486804255,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.0326890232898732,"d":"0.03"},{"v":0.0469574620300247,"d":"0.05"}]
["g4341.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|729338445|ref|XP_010539211.1|",{"$nulls":4},{"v":9.91836099186938,"d":"9.92"},{"v":3.07372710823399,"d":"3.07"},{"v":6.24558480226287,"d":"6.25"},{"v":6.03415974112261,"d":"6.03"},null,"X"]
["g3577.t1",{"$nulls":6},"ARATHwo_AT3G19120.1","PIF / Ping-Pong family of plant transposases; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 644 Blast hits to 642 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 49; Plants - 189; Viruses - 3; Other Eukaryotes - 24 (source: NCBI BLink).","sp|Q8BR93|HARB1_MOUSE","Putative nuclease HARBI1","gi|688559892|ref|XP_009300611.1|",{"$nulls":4},{"v":0.071558906438173,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0.0761379987384117,"d":"0.08"},{"v":0,"d":"0.00"}]
["g3595.t1",{"$nulls":20},"X","X"]
["g3614.t1",6479,8168,null,"protein methylation","methyltransferase activity",null,"ARATHwo_AT3G06930.2","Encodes an type I protein arginine methyltransferase. PRMT4b can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.","sp|Q7XI75|CARM1_ORYSJ","Probable histone-arginine methyltransferase CARM1","gi|302784248|ref|XP_002973896.1|",null,null,"x","x",{"v":4.54332774426918,"d":"4.54"},{"v":4.31238262726792,"d":"4.31"},{"v":3.35709432098987,"d":"3.36"},{"v":5.55883323532428,"d":"5.56"}]
["g3630.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0595993777670546,"d":"0.06"},{"v":0.931905758807207,"d":"0.93"},{"v":0,"d":"0.00"},"X"]
["g56853.t1"]
["g56892.t1"]
["g56908.t1",{"$nulls":15},{"v":2.81202210651699,"d":"2.81"},{"v":3.70008703771813,"d":"3.70"},{"v":4.93988810611113,"d":"4.94"},{"v":2.1050023499068,"d":"2.11"}]
["g81701.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.704613162950433,"d":"0.70"},{"v":2.37872900286612,"d":"2.38"},{"v":0.442716582937517,"d":"0.44"},"X",null,"X"]
["g3672.t1",{"$nulls":6},"ARATHwo_AT3G29033.1","glycine-rich protein; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G44085.1); Has 270 Blast hits to 229 proteins in 72 species: Archae - 0; Bacteria - 27; Metazoa - 122; Fungi - 51; Plants - 50; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink).",null,null,"gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g3690.t1",{"$nulls":6},"ARATHwo_AT2G23940.1","Protein of unknown function (DUF788); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF788 (InterPro:IPR008506); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF788) (TAIR:AT4G30500.1); Has 311 Blast hits to 311 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).","sp|Q54UB0|TM208_DICDI","Transmembrane protein 208 homolog","gi|302794504|ref|XP_002979016.1|",null,null,"x","x",{"v":23.891837372338,"d":"23.89"},{"v":5.60195169017092,"d":"5.60"},{"v":3.17345989639171,"d":"3.17"},{"v":8.52310110310091,"d":"8.52"}]
["g56914.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595496422|gb|EXX77696.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.296406296081209,"d":"0.30"},{"v":0,"d":"0.00"},"X"]
["g57011.t1"]
["g3709.t1",null,16787,9536,null,"hydrolase activity","plastid",{"$nulls":4},"gi|302784292|ref|XP_002973918.1|",null,null,"x","x",{"v":0.233339235890643,"d":"0.23"},{"v":0.470547600548843,"d":"0.47"},{"v":0.835736729956397,"d":"0.84"},{"v":0.753465347047861,"d":"0.75"}]
["g3719.t1",{"$nulls":8},"sp|P0C6U3|R1A_CVHN1","Replicase polyprotein 1a",{"$nulls":5},{"v":0.104111818553601,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0.0278146440736938,"d":"0.03"},{"v":0.049537844019281,"d":"0.05"}]
["g3726.t1",{"$nulls":10},"gi|595492255|gb|EXX75571.1|",{"$nulls":4},{"v":1.00232699780783,"d":"1.00"},{"v":10.0594603811187,"d":"10.06"},{"v":2.96050420571484,"d":"2.96"},{"v":15.6646708823949,"d":"15.66"}]
["g3743.t1",{"$nulls":12},"x","x","x",{"v":0.998065689568484,"d":"1.00"},{"v":0.646893064024994,"d":"0.65"},{"v":114.765433995426,"d":"114.77"},{"v":1.16890981439953,"d":"1.17"}]
["g3760.t1","0006108:0006099:0044262",30060,null,"malate metabolic process:tricarboxylic acid cycle:cellular carbohydrate metabolic process","L-malate dehydrogenase activity",null,"ARATHwo_AT5G43330.1","predicted to encode a cytosolic malate dehydrogenase.","sp|Q08062|MDHC_MAIZE","Malate dehydrogenase, cytoplasmic","gi|24527967|emb|CAC79550.1|",null,"x","x","x",{"v":91.3520813202253,"d":"91.35"},{"v":55.1435223345515,"d":"55.14"},{"v":22.860965901144,"d":"22.86"},{"v":5.8843558005476,"d":"5.88"}]
["g3777.t2",{"$nulls":10},"gi|698569231|ref|XP_009774276.1|",{"$nulls":4},{"v":0.418910432320673,"d":"0.42"},{"v":3.72635690620114,"d":"3.73"},{"v":5.33105561502113,"d":"5.33"},{"v":3.18534104282044,"d":"3.19"}]
["g81818.t1",{"$nulls":19},"X",null,"X"]
["g57225.t1","0010332:0006302:0006471","0003677:0003950",5634,"response to gamma radiation:double-strand break repair:protein ADP-ribosylation","DNA binding:NAD+ ADP-ribosyltransferase activity","nucleus","ARATHwo_AT4G02390.1","Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .","sp|Q11207|PARP2_ARATH","Poly [ADP-ribose] polymerase 2","gi|727419982|ref|XP_010429576.1|",null,null,"x","x",{"v":3.01935517633324,"d":"3.02"},{"v":2.51419195680287,"d":"2.51"},{"v":1.9986372046428,"d":"2.00"},{"v":0.515410183603836,"d":"0.52"}]
["g3795.t1",{"$nulls":15},{"v":13.154177756538,"d":"13.15"},{"v":8.78852739506586,"d":"8.79"},{"v":2.56672674866561,"d":"2.57"},{"v":0.9515231755915,"d":"0.95"}]
["g3812.t1",{"$nulls":19},"X",null,"X"]
["g3830.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0281874989738734,"d":"0.03"},{"v":5.89748138295285,"d":"5.90"},{"v":0,"d":"0.00"}]
["g3845.t1",{"$nulls":6},"ARATHwo_AT1G47550.2","Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.","sp|Q9SX85|SEC3A_ARATH","Exocyst complex component SEC3A","gi|802592758|ref|XP_012071756.1|",null,null,"x","x",{"v":2.82076036386918,"d":"2.82"},{"v":0.484727242620785,"d":"0.48"},{"v":0.608155117226572,"d":"0.61"},{"v":0.0950384343108707,"d":"0.10"}]
["g3865.t1","0044763:0006796",16772,null,"single-organism cellular process:phosphate-containing compound metabolic process","transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G27320.1","Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.","sp|Q9C5U1|AHK3_ARATH","Histidine kinase 3","gi|497279878|ref|WP_009594095.1|",{"$nulls":4},{"v":0.0278883540385839,"d":"0.03"},{"v":0.0670950908957969,"d":"0.07"},{"v":5.74761996369497,"d":"5.75"},{"v":0.378057951062928,"d":"0.38"}]
["g57338.t1",{"$nulls":10},"gi|475602468|gb|EMT25146.1|",{"$nulls":4},{"v":0.0521913278397017,"d":"0.05"},{"v":1.30969698133437,"d":"1.31"},{"v":0.890894816270805,"d":"0.89"},{"v":0.64359947808032,"d":"0.64"}]
["g81937.t1",{"$nulls":15},{"v":11.7541874171424,"d":"11.75"},{"v":19.4576947306644,"d":"19.46"},{"v":13.1763801729529,"d":"13.18"},{"v":15.6466810842129,"d":"15.65"}]
["g3873.t1",null,"0016787:1901363:0097159",null,null,"hydrolase activity:heterocyclic compound binding:organic cyclic compound binding",null,"ARATHwo_AT3G02065.2","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, HIT-type (InterPro:IPR007529), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q0E2Z7|RH41_ORYSJ","DEAD-box ATP-dependent RNA helicase 41","gi|586752213|ref|XP_006852211.1|",{"$nulls":4},{"v":0.727031090122133,"d":"0.73"},{"v":0.195591010455989,"d":"0.20"},{"v":0.332752126692343,"d":"0.33"},{"v":0.0461392986929013,"d":"0.05"}]
["g3890.t1","0044699:0008152",4559,"0043231:0044444:0012505:0016020","single-organism process:metabolic process","alpha-mannosidase activity","intracellular membrane-bounded organelle:cytoplasmic part:endomembrane system:membrane","ARATHwo_AT1G30000.1","alpha-mannosidase 3 (MNS3); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: alpha-mannosidase 2 (TAIR:AT3G21160.1); Has 2086 Blast hits to 1880 proteins in 193 species: Archae - 0; Bacteria - 12; Metazoa - 798; Fungi - 875; Plants - 191; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).","sp|Q93Y37|MNS3_ARATH","Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3","gi|502078703|ref|XP_004486029.1|",{"$nulls":4},{"v":0.34353986678338,"d":"0.34"},{"v":0.961534800996096,"d":"0.96"},{"v":2.96936924248782,"d":"2.97"},{"v":1.55995803455851,"d":"1.56"}]
["g3907.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|390366728|ref|XP_003731101.1|",{"$nulls":8},"X"]
["g3925.t1"]
["g3942.t1"]
["g57531.t1",{"$nulls":15},{"v":3.39216582853745,"d":"3.39"},{"v":7.46331803184073,"d":"7.46"},{"v":3.01507086745905,"d":"3.02"},{"v":5.48335934952328,"d":"5.48"}]
["g3959.t1",{"$nulls":6},"ARATHwo_AT1G67120.1","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.155649090849353,"d":"0.16"},{"v":0,"d":"0.00"}]
["g3973.t1"]
["g3991.t1",{"$nulls":6},"ARATHwo_AT1G06660.1","Encodes JASON. jason mutant produces diploid male gametes leading to triploid progeny. Diploid gametes in the jason mutant are generated by a defect in male meiosis II.","sp|F4IDQ5|JASON_ARATH","Protein JASON","gi|449460030|ref|XP_004147749.1|",{"$nulls":4},{"v":0.0279117762952727,"d":"0.03"},{"v":0.318121497247828,"d":"0.32"},{"v":1.03089374169932,"d":"1.03"},{"v":0.814419973912404,"d":"0.81"}]
["g4008.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.134225752272739,"d":"0.13"},{"v":0,"d":"0.00"}]
["g4022.t1","0010498:0019307:0009651:0019932:0007010:0009266:0006972:0006833:0007030:0006094:0019853:0009298:0046686:0006096","0005515:0004615",5829,"proteasomal protein catabolic process:mannose biosynthetic process:response to salt stress:second-messenger-mediated signaling:cytoskeleton organization:response to temperature stimulus:hyperosmotic response:water transport:Golgi organization:gluconeogenesis:L-ascorbic acid biosynthetic process:GDP-mannose biosynthetic process:response to cadmium ion:glycolysis","protein binding:phosphomannomutase activity","cytosol","ARATHwo_AT2G45790.1","encodes a phosphomannomutase, involved in ascorbate biosynthesis","sp|O80840|PMM_ARATH","Phosphomannomutase","gi|548832365|gb|ERM95161.1|",null,null,"x","x",{"v":2.93413101999541,"d":"2.93"},{"v":0.724248899402886,"d":"0.72"},{"v":0.255805597891693,"d":"0.26"},{"v":0.0924973501908383,"d":"0.09"}]
["g57545.t1",{"$nulls":8},"sp|Q8AII1|POL_SIVTN","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g82112.t1",{"$nulls":10},"gi|723730914|ref|XP_010326482.1|",{"$nulls":8},"X"]
["g4045.t1","0030259:0016126:0048316",51507,5886,"lipid glycosylation:sterol biosynthetic process:seed development","beta-sitosterol UDP-glucosyltransferase activity","plasma membrane","ARATHwo_AT3G07020.2","encodes a 3beta-hydroxy sterol UDP-glucosyltransferase. ugt80a2 mutant plants have reduced steryl glycoside and acyl steryl glycoside levels and reduced seed size. ugt80a2/b1 double mutants have normal levels of celluose and normal cold stress tolerance.","sp|Q9M8Z7|U80A2_ARATH","Sterol 3-beta-glucosyltransferase UGT80A2","gi|672131918|ref|XP_008789527.1|",null,null,"x","x",{"v":1.66784472380189,"d":"1.67"},{"v":9.70825508169106,"d":"9.71"},{"v":4.90496210410132,"d":"4.90"},{"v":4.55800853995088,"d":"4.56"}]
["g4061.t2",{"$nulls":6},"ARATHwo_AT1G27090.1","glycine-rich protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24690.1); Has 13206 Blast hits to 7104 proteins in 677 species: Archae - 0; Bacteria - 2039; Metazoa - 5686; Fungi - 1146; Plants - 2571; Viruses - 80; Other Eukaryotes - 1684 (source: NCBI BLink).",null,null,"gi|168018470|ref|XP_001761769.1|",{"$nulls":4},{"v":25.3376835029092,"d":"25.34"},{"v":14.4902035545747,"d":"14.49"},{"v":6.06460477832026,"d":"6.06"},{"v":9.32494015860668,"d":"9.32"}]
["g57609.t1"]
["g57654.t1",{"$nulls":6},"ARATHwo_AT3G26950.1","unknown protein; Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":1.44662803027978,"d":"1.45"},{"v":1.64037050663635,"d":"1.64"},{"v":0.832929985852105,"d":"0.83"},{"v":0.834587834256092,"d":"0.83"}]
["g4078.t1",{"$nulls":15},{"v":0.0889374501269533,"d":"0.09"},{"v":0.339376675274427,"d":"0.34"},{"v":0.094262764977095,"d":"0.09"},{"v":0,"d":"0.00"}]
["g4102.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|340382901|ref|XP_003389956.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0825025723609143,"d":"0.08"},{"v":0.0565657024968153,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g4118.t1",{"$nulls":8},"sp|Q7KQM6|PERQ1_DROME","PERQ amino acid-rich with GYF domain-containing protein CG11148",{"$nulls":3},"x","x",{"v":2.54057878472402,"d":"2.54"},{"v":7.37870335443787,"d":"7.38"},{"v":3.89655250753988,"d":"3.90"},{"v":24.261228310217,"d":"24.26"}]
["g4135.t1",{"$nulls":6},"ARATHwo_AT1G69070.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink).","sp|P78316|NOP14_HUMAN","Nucleolar protein 14","gi|168018956|ref|XP_001762011.1|",null,null,"x","x",{"v":8.02373443439308,"d":"8.02"},{"v":15.7403067408411,"d":"15.74"},{"v":6.31794946278641,"d":"6.32"},{"v":15.7111089474564,"d":"15.71"}]
["g57754.t1",{"$nulls":6},"ARATHwo_AT3G49620.1","encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.","sp|Q8H113|DIN11_ARATH","Probable 2-oxoglutarate-dependent dioxygenase DIN11","gi|629088653|gb|KCW54906.1|",null,"x","x","x",{"v":21.1171050932078,"d":"21.12"},{"v":2.16482650944564,"d":"2.16"},{"v":2.25195438871058,"d":"2.25"},{"v":1.50166616167305,"d":"1.50"}]
["g4140.t1",{"$nulls":8},"sp|Q8BIQ5|CSTF2_MOUSE","Cleavage stimulation factor subunit 2","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.18229312060143,"d":"0.18"},{"v":0,"d":"0.00"},"X"]
["g4160.t1","0010155:0009735:0009750:0006098:0010218:0009749:0006833:0010114:0009651:0007568:0006542:0006972:0009744:0007030:0006096:0009637:0009644:0046686:0009409:0019344:0019676","0004356:0005524","0009941:0048046:0022626:0009570:0009535:0005739","regulation of proton transport:response to cytokinin stimulus:response to fructose stimulus:pentose-phosphate shunt:response to far red light:response to glucose stimulus:water transport:response to red light:response to salt stress:aging:glutamine biosynthetic process:hyperosmotic response:response to sucrose stimulus:Golgi organization:glycolysis:response to blue light:response to high light intensity:response to cadmium ion:response to cold:cysteine biosynthetic process:ammonia assimilation cycle","glutamate-ammonia ligase activity:ATP binding","chloroplast envelope:apoplast:cytosolic ribosome:chloroplast stroma:chloroplast thylakoid membrane:mitochondrion","ARATHwo_AT5G35630.1","chloroplastic glutamine synthetase","sp|Q42624|GLNAC_BRANA","Glutamine synthetase, chloroplastic","gi|567876027|ref|XP_006430603.1|",null,"x",null,"x",{"v":18.2501465971158,"d":"18.25"},{"v":4.32227945597714,"d":"4.32"},{"v":2.65195753305366,"d":"2.65"},{"v":1.28147145850462,"d":"1.28"}]
["g4177.t1",{"$nulls":8},"sp|Q54K11|GRLR_DICDI","Metabotropic glutamate receptor-like protein R","gi|851347406|ref|WP_048190923.1|",null,"x","x","x",{"v":28.4001127278299,"d":"28.40"},{"v":50.1505534599584,"d":"50.15"},{"v":11.2402721917643,"d":"11.24"},{"v":9.0217393494271,"d":"9.02"}]
["g4193.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|315042437|ref|XP_003170595.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0840402957647313,"d":"0.08"},{"v":0.443201354747297,"d":"0.44"},{"v":0.531127345593857,"d":"0.53"},"X"]
["g57791.t1",{"$nulls":8},"sp|Q00962|POL_CAMVN","Enzymatic polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.197932691660223,"d":"0.20"},{"v":0.737349074158827,"d":"0.74"},{"v":0.158328753879984,"d":"0.16"},null,"X"]
["g57899.t1",{"$nulls":8},"sp|Q2QLF8|CTTB2_CALJA","Cortactin-binding protein 2",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.238982748200281,"d":"0.24"},{"v":1.97768220205625,"d":"1.98"},{"v":0,"d":"0.00"}]
["g4352.t1"]
["g4369.t1"]
["g4385.t1",{"$nulls":6},"ARATHwo_AT3G50910.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66480.1); Has 76 Blast hits to 75 proteins in 28 species: Archae - 0; Bacteria - 10; Metazoa - 7; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).",{"$nulls":7},{"v":0.720192821869909,"d":"0.72"},{"v":1.27688433835905,"d":"1.28"},{"v":1.3311182900862,"d":"1.33"},{"v":2.84951884778768,"d":"2.85"}]
["g4402.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.212593120575293,"d":"0.21"},{"v":6.09374130662315,"d":"6.09"},{"v":0.360951736388113,"d":"0.36"}]
["g4405.t1",{"$nulls":13},"x","x",{"v":0.508154263409562,"d":"0.51"},{"v":6.897232291178,"d":"6.90"},{"v":16.5848111131797,"d":"16.58"},{"v":0.293886155305678,"d":"0.29"}]
["g57966.t1",{"$nulls":6},"ARATHwo_AT4G31520.1","SDA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G13160.1); Has 8756 Blast hits to 5682 proteins in 453 species: Archae - 14; Bacteria - 613; Metazoa - 3270; Fungi - 1126; Plants - 516; Viruses - 196; Other Eukaryotes - 3021 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.0727944507416293,"d":"0.07"},{"v":0.0680017622900763,"d":"0.07"},{"v":0,"d":"0.00"}]
["g5581.t1",{"$nulls":15},{"v":0.409814711385593,"d":"0.41"},{"v":0.778627643570198,"d":"0.78"},{"v":3.15731625648563,"d":"3.16"},{"v":1.37200838976469,"d":"1.37"},"X",null,"X"]
["g5597.t1",{"$nulls":8},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.470877186447707,"d":"0.47"},{"v":3.44194220259814,"d":"3.44"},{"v":1.51937213430866,"d":"1.52"},"X"]
["g5614.t1",{"$nulls":10},"gi|597763228|ref|XP_007245562.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.255052600430052,"d":"0.26"},{"v":0.982562826205653,"d":"0.98"},{"v":0.236446044365152,"d":"0.24"},"X"]
["g5630.t1",{"$nulls":6},"ARATHwo_AT3G08610.1","unknown protein; Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|Q9C9Z5|NDUA1_ARATH","NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1","gi|168068980|ref|XP_001786280.1|",null,"x","x","x",{"v":86.4877607034598,"d":"86.49"},{"v":45.3444657115784,"d":"45.34"},{"v":27.3395749363229,"d":"27.34"},{"v":23.8996711056088,"d":"23.90"}]
["g5655.t1",{"$nulls":6},"ARATHwo_AT2G03270.1","DNA-binding protein, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, putative (InterPro:IPR004483), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G35970.1); Has 6736 Blast hits to 5857 proteins in 1106 species: Archae - 209; Bacteria - 2506; Metazoa - 1275; Fungi - 1034; Plants - 659; Viruses - 7; Other Eukaryotes - 1046 (source: NCBI BLink).","sp|Q60560|SMBP2_MESAU","DNA-binding protein SMUBP-2","gi|628840696|ref|XP_007770151.1|",null,null,"x","x",{"v":1.89878507862549,"d":"1.90"},{"v":0.980302446366813,"d":"0.98"},{"v":1.3125876992804,"d":"1.31"},{"v":1.36393061228251,"d":"1.36"}]
["g5665.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|727650546|ref|XP_010495970.1|",{"$nulls":4},{"v":1.06013802691145,"d":"1.06"},{"v":3.88634951330862,"d":"3.89"},{"v":0.6473362706253,"d":"0.65"},{"v":2.94718329638919,"d":"2.95"},null,"X"]
["g5682.t1",{"$nulls":6},"ARATHwo_AT3G06300.1","Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.","sp|Q8L970|P4H7_ARATH","Probable prolyl 4-hydroxylase 7","gi|308801327|ref|XP_003077977.1|",null,null,"x","x",{"v":0.430950384571834,"d":"0.43"},{"v":2.83736956837813,"d":"2.84"},{"v":18.8627547024979,"d":"18.86"},{"v":7.3660247339535,"d":"7.37"}]
["g5698.t1",null,5488,null,null,"binding",null,"ARATHwo_AT2G20780.1","Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: polyol/monosaccharide transporter 5 (TAIR:AT3G18830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q0WUU6|PLT4_ARATH","Probable polyol transporter 4","gi|661185511|emb|CDH52155.1|",{"$nulls":4},{"v":2.43874441955314,"d":"2.44"},{"v":7.12525204674176,"d":"7.13"},{"v":9.49656220119491,"d":"9.50"},{"v":4.86260815018204,"d":"4.86"},null,"X"]
["g4419.t1",{"$nulls":8},"sp|Q8FVF3|LEU3_BRUSU","3-isopropylmalate dehydrogenase","gi|501030021|ref|WP_012082104.1|",null,"x","x","x",{"v":49.0338792234305,"d":"49.03"},{"v":47.3625171087035,"d":"47.36"},{"v":12.9757771775609,"d":"12.98"},{"v":0,"d":"0.00"}]
["g4445.t2","0046483:0034641:1901360:0006725",5488,null,"heterocycle metabolic process:cellular nitrogen compound metabolic process:organic cyclic compound metabolic process:cellular aromatic compound metabolic process","binding",null,"ARATHwo_AT2G01060.1","myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).","sp|Q8GUN5|PHL1_ARATH","Protein PHR1-LIKE 1","gi|297735683|emb|CBI18370.3|",{"$nulls":4},{"v":3.55740715398293,"d":"3.56"},{"v":3.35150105981607,"d":"3.35"},{"v":4.18981390919202,"d":"4.19"},{"v":4.80129408172627,"d":"4.80"}]
["g4451.t1"]
["g58049.t1"]
["g4463.t1",{"$nulls":10},"gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0306307514988313,"d":"0.03"},{"v":0.277381946348235,"d":"0.28"},{"v":0.423652517718515,"d":"0.42"},"X"]
["g4480.t1",6418,"0000166:0004812",null,"tRNA aminoacylation for protein translation","nucleotide binding:aminoacyl-tRNA ligase activity",null,"ARATHwo_AT5G16715.1","embryo defective 2247 (EMB2247); FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia, tRNA-binding arm (InterPro:IPR019499), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 40467 Blast hits to 37894 proteins in 3157 species: Archae - 953; Bacteria - 21019; Metazoa - 839; Fungi - 772; Plants - 400; Viruses - 0; Other Eukaryotes - 16484 (source: NCBI BLink).","sp|A9BIJ7|SYV_PETMO","Valine--tRNA ligase","gi|658045072|ref|XP_008358208.1|",{"$nulls":4},{"v":13.360826136786,"d":"13.36"},{"v":4.35475262193556,"d":"4.35"},{"v":3.3013879858281,"d":"3.30"},{"v":0.488982078932869,"d":"0.49"}]
["g4493.t1",{"$nulls":6},"ARATHwo_AT2G44310.1","Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G54530.1); Has 278 Blast hits to 269 proteins in 34 species: Archae - 0; Bacteria - 3; Metazoa - 2; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).",null,null,"gi|502158394|ref|XP_004511134.1|",{"$nulls":4},{"v":3.07098750630482,"d":"3.07"},{"v":18.7778928467889,"d":"18.78"},{"v":20.2639364462136,"d":"20.26"},{"v":20.4573387221241,"d":"20.46"}]
["g4513.t1"]
["g58139.t1"]
["g58153.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|390366728|ref|XP_003731101.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0898175465616143,"d":"0.09"},{"v":0.821269703012324,"d":"0.82"},{"v":0,"d":"0.00"},"X"]
["g4533.t1",{"$nulls":15},{"v":0.139471322239396,"d":"0.14"},{"v":0.158254298382718,"d":"0.16"},{"v":0.059637671823912,"d":"0.06"},{"v":0,"d":"0.00"},null,"X","X"]
["g4549.t1",{"$nulls":10},"gi|50878384|gb|AAT85159.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.205076142290367,"d":"0.21"},{"v":0,"d":"0.00"},"X"]
["g4565.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|514689791|ref|XP_004992470.1|",{"$nulls":8},"X"]
["g4583.t1",{"$nulls":10},"gi|923851487|ref|XP_013704088.1|",{"$nulls":4},{"v":0.0595211362302024,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.404264867979882,"d":"0.40"},{"v":0.146469902154433,"d":"0.15"},"X"]
["g4585.t1",{"$nulls":6},"ARATHwo_AT1G26470.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).",null,null,"gi|351726474|ref|NP_001235848.1|",null,null,"x","x",{"v":0.36898908063191,"d":"0.37"},{"v":0.922601688274973,"d":"0.92"},{"v":0.0991470347217967,"d":"0.10"},{"v":4.33991414649093,"d":"4.34"}]
["g4602.t1",{"$nulls":6},"ARATHwo_AT3G26420.1","Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance. Members of this protein family include AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b) and AT5G04280 (AtRZ-1c).",{"$nulls":7},{"v":0.0534862100084728,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.194879734302292,"d":"0.19"},{"v":0,"d":"0.00"}]
["g4619.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.963538857041403,"d":"0.96"},{"v":0.229696006315749,"d":"0.23"}]
["g4641.t1",{"$nulls":15},{"v":0.362509056418582,"d":"0.36"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g58299.t1",{"$nulls":10},"gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.163725796147503,"d":"0.16"},{"v":0,"d":"0.00"}]
["g58401.t1",{"$nulls":6},"ARATHwo_AT5G08390.1","Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 114222 Blast hits to 41452 proteins in 998 species: Archae - 86; Bacteria - 11863; Metazoa - 46637; Fungi - 24709; Plants - 15354; Viruses - 6; Other Eukaryotes - 15567 (source: NCBI BLink).","sp|Q96MT7|CFA44_HUMAN","Cilia- and flagella-associated protein 44","gi|443719200|gb|ELU09474.1|",null,null,"x","x",{"v":0.106106094790801,"d":"0.11"},{"v":0.293209488112552,"d":"0.29"},{"v":16.8728064256711,"d":"16.87"},{"v":0.357748243607659,"d":"0.36"}]
["g4668.t1"]
["g4683.t1","0006333:0006278:0006508:0006310","0046872:0003964:0003677:0003682:0003723:0004190",null,"chromatin assembly or disassembly:RNA-dependent DNA replication:proteolysis:DNA recombination","metal ion binding:RNA-directed DNA polymerase activity:DNA binding:chromatin binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q4U0X6|POL_HTL3P","Gag-Pro-Pol polyprotein","gi|923616448|ref|XP_013746037.1|",{"$nulls":4},{"v":0.127612959536971,"d":"0.13"},{"v":1.32769360791164,"d":"1.33"},{"v":4.38975059445274,"d":"4.39"},{"v":0.101858445363469,"d":"0.10"},null,"X"]
["g4691.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|923695255|ref|XP_013657890.1|",{"$nulls":4},{"v":0.0597888370524951,"d":"0.06"},{"v":0.579008173167279,"d":"0.58"},{"v":2.57234076501965,"d":"2.57"},{"v":0.597390840226065,"d":"0.60"},null,"X"]
["g4718.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0173524748931048,"d":"0.02"},{"v":0.211257695315929,"d":"0.21"},{"v":0,"d":"0.00"},"X"]
["g58476.t1",{"$nulls":20},"X","X"]
["g4725.t1",{"$nulls":20},"X","X"]
["g4742.t1",{"$nulls":8},"sp|P03555|POL_CAMVC","Enzymatic polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0564955161661397,"d":"0.06"},{"v":0.643524357685561,"d":"0.64"},{"v":0.0945119741014747,"d":"0.09"},"X"]
["g4751.t1",{"$nulls":6},"ARATHwo_AT5G13470.1","unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|294461187|gb|ADE76157.1|",null,null,"x","x",{"v":16.2814099048213,"d":"16.28"},{"v":10.391986574323,"d":"10.39"},{"v":9.02824827883305,"d":"9.03"},{"v":29.3150497003928,"d":"29.32"}]
["g4774.t1",{"$nulls":8},"sp|O01761|UNC89_CAEEL","Muscle M-line assembly protein unc-89",{"$nulls":5},{"v":0.085612299151229,"d":"0.09"},{"v":0.342957567743321,"d":"0.34"},{"v":7.16788482911935,"d":"7.17"},{"v":0.773606363137787,"d":"0.77"}]
["g82931.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.668685580497717,"d":"0.67"},{"v":2.04245130907201,"d":"2.04"},{"v":0.0971856823679743,"d":"0.10"}]
["g4794.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",null,null,"gi|595885000|ref|XP_007213081.1|","x"]
["g4812.t1","0044238:1901564:0046483:0034641:1901360",16787,null,"primary metabolic process:organonitrogen compound metabolic process:heterocycle metabolic process:cellular nitrogen compound metabolic process:organic cyclic compound metabolic process","hydrolase activity",null,"ARATHwo_AT5G43600.1","Encodes a protein with ureidoglycolate amidohydrolase activity in vitro. It is 27% identical and 43% similar to the E. coli allantoate amidohydrolase (AAH), but, in vitro assays with purified protein and allantoate as a substrate do not show any increase in ammonium concentration, indicating that there this enzyme has no AAH activity.","sp|Q2QMN7|UAH_ORYSJ","Probable ureidoglycolate hydrolase","gi|672188216|ref|XP_008813532.1|",null,null,"x","x",{"v":45.7441149513072,"d":"45.74"},{"v":4.64944539595178,"d":"4.65"},{"v":11.3122844829463,"d":"11.31"},{"v":15.0074938152397,"d":"15.01"}]
["g4824.t1","0019354:0006979:0009236","0046872:0051266:0016852",9507,"siroheme biosynthetic process:response to oxidative stress:cobalamin biosynthetic process","metal ion binding:sirohydrochlorin ferrochelatase activity:sirohydrochlorin cobaltochelatase activity","chloroplast","ARATHwo_AT1G50170.1","encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis","sp|O34632|SIRB_BACSU","Sirohydrochlorin ferrochelatase","gi|116792573|gb|ABK26418.1|",null,null,"x","x",{"v":9.87603963664192,"d":"9.88"},{"v":4.10484212981325,"d":"4.10"},{"v":4.30196182073633,"d":"4.30"},{"v":1.32682511661043,"d":"1.33"}]
["g58698.t1",{"$nulls":13},"x","x",{"v":1.18252388021949,"d":"1.18"},{"v":1.11596298535543,"d":"1.12"},{"v":0.9868084977673,"d":"0.99"},{"v":1.33257592952251,"d":"1.33"}]
["g82951.t1","0006071:0006094:0016311","0046872:0042132",null,"glycerol metabolic process:gluconeogenesis:dephosphorylation","metal ion binding:fructose 1,6-bisphosphate 1-phosphatase activity",{"$nulls":3},"sp|Q03224|GLPX_BACSU","Fructose-1,6-bisphosphatase class 2","gi|736450612|ref|WP_034472453.1|",{"$nulls":8},"X",null,null,"g82951"]
["g4839.t1",{"$nulls":10},"gi|302773940|ref|XP_002970387.1|",{"$nulls":4},{"v":0.0840378518127504,"d":"0.08"},{"v":0.445405342346549,"d":"0.45"},{"v":0.637255110345669,"d":"0.64"},{"v":1.80669166408583,"d":"1.81"}]
["g4856.t1",{"$nulls":6},"ARATHwo_AT2G45580.1","member of CYP76C","sp|Q9JMA7|CP341_MOUSE","Cytochrome P450 3A41","gi|16033755|gb|AAL13316.1|AF424780_1",null,null,"x","x",{"v":4.35885215378587,"d":"4.36"},{"v":3.93936015741948,"d":"3.94"},{"v":1.70163761828454,"d":"1.70"},{"v":4.60033481941813,"d":"4.60"}]
["g4873.t1",null,null,5739,null,null,"mitochondrion","ARATHwo_AT1G27840.3","Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity.","sp|Q5BIM8|ERCC8_BOVIN","DNA excision repair protein ERCC-8","gi|357125958|ref|XP_003564656.1|",{"$nulls":4},{"v":4.99567536850602,"d":"5.00"},{"v":0.832597371571702,"d":"0.83"},{"v":0.946068104921714,"d":"0.95"},{"v":1.469019158714,"d":"1.47"}]
["g4892.t1","0050896:0044237",4679,5737,"response to stimulus:cellular metabolic process","AMP-activated protein kinase activity","cytoplasm","ARATHwo_AT4G16360.3","5'-AMP-activated protein kinase beta-2 subunit protein; FUNCTIONS IN: AMP-activated protein kinase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT5G21170.1).","sp|Q9SCY5|KINB2_ARATH","SNF1-related protein kinase regulatory subunit beta-2","gi|302799354|ref|XP_002981436.1|",null,null,"x","x",{"v":8.09112318559293,"d":"8.09"},{"v":5.49139992755854,"d":"5.49"},{"v":5.20940710818417,"d":"5.21"},{"v":8.08512510367857,"d":"8.09"}]
["g83045.t1",{"$nulls":15},{"v":0.560711376892826,"d":"0.56"},{"v":0.537058797825065,"d":"0.54"},{"v":4.21429268174821,"d":"4.21"},{"v":0.420265015602823,"d":"0.42"},"X",null,"X"]
["g5703.t1",{"$nulls":13},"x","x",{"v":15.2136147206078,"d":"15.21"},{"v":20.3959164504077,"d":"20.40"},{"v":8.54238586379558,"d":"8.54"},{"v":8.36482424365814,"d":"8.36"}]
["g5718.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|130405|sp|P04323.1|POL3_DROME",{"$nulls":4},{"v":0.183706360490307,"d":"0.18"},{"v":1.60423720388131,"d":"1.60"},{"v":4.04090496725812,"d":"4.04"},{"v":2.07656361977631,"d":"2.08"},"X"]
["g5735.t1",8380,null,"0080008:0005634","RNA splicing",null,"Cul4-RING ubiquitin ligase complex:nucleus","ARATHwo_AT1G73720.1","Encodes SMU1, a protein involved in RNA splicing.","sp|Q8W117|SMU1_ARATH","Suppressor of mec-8 and unc-52 protein homolog 1","gi|719998868|ref|XP_010255536.1|",null,"x","x","x",{"v":14.3965615747827,"d":"14.40"},{"v":9.44142591447201,"d":"9.44"},{"v":7.72602247099022,"d":"7.73"},{"v":13.5549033734181,"d":"13.55"}]
["g5756.t1",{"$nulls":6},"ARATHwo_AT1G80230.1","Rubredoxin-like superfamily protein; FUNCTIONS IN: cytochrome-c oxidase activity; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT3G15640.1); Has 455 Blast hits to 455 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 89; Plants - 94; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).","sp|Q9SSB8|CX5B2_ARATH","Cytochrome c oxidase subunit 5b-2, mitochondrial","gi|168031320|ref|XP_001768169.1|",null,null,"x","x",{"v":10.5007295142974,"d":"10.50"},{"v":1.18431219226547,"d":"1.18"},{"v":1.05895434216053,"d":"1.06"},{"v":0.290398247790481,"d":"0.29"}]
["g59123.t1",{"$nulls":6},"ARATHwo_AT1G65840.1","encodes a peroxisomal polyamine oxidase, involved in the back-conversion polyamine degradation pathway. Among the five polyamine oxidases in the Arabidopsis genome, PAO4 is the major isoform in root peroxisomes.","sp|Q8H191|PAO4_ARATH","Probable polyamine oxidase 4","gi|763781980|gb|KJB49051.1|",null,null,"x","x",{"v":25.453135066696,"d":"25.45"},{"v":17.7203401483041,"d":"17.72"},{"v":24.8674453950023,"d":"24.87"},{"v":0.279495918837842,"d":"0.28"}]
["g6269.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P98158|LRP2_RAT","Low-density lipoprotein receptor-related protein 2","gi|731379348|ref|XP_010668433.1|",{"$nulls":4},{"v":0.644872823795475,"d":"0.64"},{"v":0.616106873415583,"d":"0.62"},{"v":2.0631664881953,"d":"2.06"},{"v":0.188979025322295,"d":"0.19"},null,"X"]
["g6286.t1",{"$nulls":13},"x","x",{"v":1.08170435450895,"d":"1.08"},{"v":3.89626742901002,"d":"3.90"},{"v":13.9685368373954,"d":"13.97"},{"v":10.4651311076261,"d":"10.47"}]
["g6304.t1",{"$nulls":6},"ARATHwo_AT1G54710.1","homolog of yeast autophagy 18 (ATG18) H (ATG18H); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1); Has 852 Blast hits to 850 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 369; Fungi - 255; Plants - 157; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).","sp|Q8H1Q5|AT18H_ARATH","Autophagy-related protein 18h","gi|168001006|ref|XP_001753206.1|",null,null,"x","x",{"v":0.48201654659061,"d":"0.48"},{"v":8.10897952368635,"d":"8.11"},{"v":12.8028126995332,"d":"12.80"},{"v":9.56083052768227,"d":"9.56"}]
["g6329.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0752585698737578,"d":"0.08"},{"v":0.0317225670640828,"d":"0.03"},null,"X","X"]
["g83341.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|675363786|gb|KFM56688.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.638602127361803,"d":"0.64"},{"v":0.15276289554967,"d":"0.15"},null,"X"]
["g6349.t1",null,3824,null,null,"catalytic activity",null,"ARATHwo_AT3G28340.1","Encodes a protein with putative galacturonosyltransferase activity.","sp|Q5U3H3|GL8D1_DANRE","Glycosyltransferase 8 domain-containing protein 1","gi|302767718|ref|XP_002967279.1|",null,null,"x","x",{"v":16.0777592029465,"d":"16.08"},{"v":19.0123864101768,"d":"19.01"},{"v":10.5536396078339,"d":"10.55"},{"v":3.33035811742059,"d":"3.33"}]
["g6364.t1",16070,null,9536,"RNA metabolic process",null,"plastid","ARATHwo_AT5G64580.1","AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 43409 Blast hits to 41131 proteins in 3311 species: Archae - 1622; Bacteria - 19384; Metazoa - 4934; Fungi - 3903; Plants - 3224; Viruses - 61; Other Eukaryotes - 10281 (source: NCBI BLink).","sp|F4KF14|FTSI4_ARATH","Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic","gi|168039290|ref|XP_001772131.1|",null,null,"x","x",{"v":3.56457436983388,"d":"3.56"},{"v":8.64941813168809,"d":"8.65"},{"v":5.56273479623407,"d":"5.56"},{"v":10.3831577661402,"d":"10.38"}]
["g6380.t1",{"$nulls":15},{"v":2.73000514907103,"d":"2.73"},{"v":31.2652060964873,"d":"31.27"},{"v":2.15350569693437,"d":"2.15"},{"v":14.2569513562922,"d":"14.26"}]
["g83438.t1",{"$nulls":8},"sp|Q80TC5|POGK_MOUSE","Pogo transposable element with KRAB domain","gi|695415743|ref|XP_009526653.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.109613366350016,"d":"0.11"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X"]
["g6399.t1",6412,3735,5840,"translation","structural constituent of ribosome","ribosome","ARATHwo_AT5G04800.1","Ribosomal S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT2G04390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P49215|RS17_SOLLC","40S ribosomal protein S17","gi|168014747|ref|XP_001759913.1|",null,"x","x","x",{"v":786.196933527939,"d":"786.20"},{"v":89.2966414655513,"d":"89.30"},{"v":70.0035735872439,"d":"70.00"},{"v":130.023547549803,"d":"130.02"}]
["g6415.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|242095692|ref|XP_002438336.1|"]
["g59427.t1"]
["g6440.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.282651378670515,"d":"0.28"},{"v":0.678753535681633,"d":"0.68"},{"v":0,"d":"0.00"},"X",null,"X"]
["g6454.t1",{"$nulls":12},"x",null,"x",{"v":0.33600893781182,"d":"0.34"},{"v":12.0898359477999,"d":"12.09"},{"v":0.0630151547916643,"d":"0.06"},{"v":0,"d":"0.00"}]
["g6476.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.196129523330248,"d":"0.20"},{"v":0,"d":"0.00"},null,"X","X"]
["g6494.t1"]
["g6511.t1",16310,"0004672:0000166",null,"phosphorylation","protein kinase activity:nucleotide binding",null,"ARATHwo_AT1G26150.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q9C660|PEK10_ARATH","Proline-rich receptor-like protein kinase PERK10","gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":1.02230311014499,"d":"1.02"},{"v":0.819477790980868,"d":"0.82"},{"v":0.628554621935562,"d":"0.63"},{"v":0.213372668627529,"d":"0.21"}]
["g83555.t1",{"$nulls":15},{"v":0.645896726304954,"d":"0.65"},{"v":1.92088325821982,"d":"1.92"},{"v":7.88085558635166,"d":"7.88"},{"v":4.11054445613689,"d":"4.11"},"X",null,"X"]
["g6525.t1",{"$nulls":6},"ARATHwo_AT5G20120.1","unknown protein; Has 54 Blast hits to 54 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).","sp|Q3T0S0|TM128_BOVIN","Transmembrane protein 128","gi|168040518|ref|XP_001772741.1|",null,null,"x","x",{"v":17.0091166436355,"d":"17.01"},{"v":3.60953296569091,"d":"3.61"},{"v":2.40288498535351,"d":"2.40"},{"v":2.51389165279704,"d":"2.51"}]
["g6542.t1",16117,46608,9507,"carotenoid biosynthetic process","carotenoid isomerase activity","chloroplast","ARATHwo_AT1G57770.1","FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: carotenoid isomerase (TAIR:AT1G06820.1); Has 6263 Blast hits to 6155 proteins in 967 species: Archae - 159; Bacteria - 2901; Metazoa - 394; Fungi - 76; Plants - 350; Viruses - 0; Other Eukaryotes - 2383 (source: NCBI BLink).","sp|Q8S4R4|CRTSO_SOLLC","Prolycopene isomerase, chloroplastic","gi|168012787|ref|XP_001759083.1|",null,null,"x","x",{"v":14.4327475450508,"d":"14.43"},{"v":12.6993132437432,"d":"12.70"},{"v":3.58003613751555,"d":"3.58"},{"v":1.22052462869628,"d":"1.22"}]
["g6560.t1",{"$nulls":15},{"v":9.24849359202183,"d":"9.25"},{"v":201.805125205622,"d":"201.81"},{"v":9.43693095378275,"d":"9.44"},{"v":0.19587434982126,"d":"0.20"}]
["g6577.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10","gi|671688033|emb|CDS12578.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0651135089903439,"d":"0.07"},{"v":0,"d":"0.00"},"X"]
["g6588.t1",null,3676,null,null,"nucleic acid binding",null,"ARATHwo_AT2G34160.1","Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G29250.1); Has 155 Blast hits to 155 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).","sp|O22969|Y2416_ARATH","Uncharacterized protein At2g34160","gi|920701359|gb|KOM44584.1|",{"$nulls":4},{"v":2.48322151725537,"d":"2.48"},{"v":3.92657305592649,"d":"3.93"},{"v":8.02582319308912,"d":"8.03"},{"v":0.0710764079680857,"d":"0.07"}]
["g6606.t1","0045332:0008152","0019829:0005524:0000287:0004012",16021,"phospholipid translocation:metabolic process","cation-transporting ATPase activity:ATP binding:magnesium ion binding:phospholipid-translocating ATPase activity","integral to membrane","ARATHwo_AT5G44240.1","Expression is upregulated in the shoot of cax1/cax3 mutant.","sp|P98205|ALA2_ARATH","Phospholipid-transporting ATPase 2","gi|302806892|ref|XP_002985177.1|",{"$nulls":4},{"v":3.14351934571362,"d":"3.14"},{"v":5.56110711020011,"d":"5.56"},{"v":5.6531823241883,"d":"5.65"},{"v":4.16427598502075,"d":"4.16"}]
["g6610.t1"]
["g6640.t1",{"$nulls":13},"x","x",{"v":5.42344349183883,"d":"5.42"},{"v":1.45208342698242,"d":"1.45"},{"v":3.11535708222419,"d":"3.12"},{"v":0.4400809437086,"d":"0.44"}]
["g59767.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0405232490558677,"d":"0.04"},{"v":0.584416220498776,"d":"0.58"},{"v":0,"d":"0.00"},"X"]
["g6657.t1",{"$nulls":10},"gi|406696792|gb|EKD00067.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0851493606290313,"d":"0.09"},{"v":0.217838594586347,"d":"0.22"},{"v":0,"d":"0.00"},"X"]
["g6673.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.163177055964799,"d":"0.16"},{"v":0,"d":"0.00"}]
["g6680.t1",{"$nulls":10},"gi|702295194|ref|XP_010047985.1|",null,null,"x","x",{"v":0.136070244243206,"d":"0.14"},{"v":1.21804130095821,"d":"1.22"},{"v":1.31099213132584,"d":"1.31"},{"v":2.99147722242528,"d":"2.99"}]
["g6693.t1",null,5488,null,null,"binding",null,"ARATHwo_AT1G72050.2","Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene. 5S rRNA is the smallest constituent of the ribosome. Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail. in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm.","sp|A2VDP4|ZN567_BOVIN","Zinc finger protein 567","gi|502123985|ref|XP_004498336.1|",{"$nulls":4},{"v":3.17661031533912,"d":"3.18"},{"v":2.07102202647301,"d":"2.07"},{"v":1.28154413031501,"d":"1.28"},{"v":0.873239380184938,"d":"0.87"}]
["g6710.t1",{"$nulls":15},{"v":0.278220680775889,"d":"0.28"},{"v":0,"d":"0.00"},{"v":0.328435253130896,"d":"0.33"},{"v":0,"d":"0.00"}]
["g6727.t1",{"$nulls":15},{"v":14.8814076749234,"d":"14.88"},{"v":4.34066834699682,"d":"4.34"},{"v":5.43288031951825,"d":"5.43"},{"v":3.51460528726914,"d":"3.51"}]
["g6742.t2",{"$nulls":13},"x","x",{"v":4.12951690848586,"d":"4.13"},{"v":3.27137299556718,"d":"3.27"},{"v":1.79141484231684,"d":"1.79"},{"v":6.23598483240617,"d":"6.24"}]
["g83859.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":1.42547992295746,"d":"1.43"},{"v":8.7142806022674,"d":"8.71"},{"v":44.6913411883337,"d":"44.69"},{"v":15.9806553212874,"d":"15.98"},"X"]
["g7929.t1"]
["g7947.t1",{"$nulls":6},"ARATHwo_AT1G11000.1","A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).","sp|O23693|MLO4_ARATH","MLO-like protein 4","gi|302798843|ref|XP_002981181.1|",{"$nulls":4},{"v":4.88154355412226,"d":"4.88"},{"v":0.788605961752932,"d":"0.79"},{"v":2.43206082064037,"d":"2.43"},{"v":0.509600296619683,"d":"0.51"}]
["g7963.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).","sp|Q54K11|GRLR_DICDI","Metabotropic glutamate receptor-like protein R","gi|658032340|ref|XP_008351676.1|",{"$nulls":4},{"v":15.7403044906362,"d":"15.74"},{"v":7.33646663107134,"d":"7.34"},{"v":2.18246036688542,"d":"2.18"},{"v":0.075268780477585,"d":"0.08"},null,"X"]
["g7980.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.346080194496559,"d":"0.35"},{"v":5.01859520236334,"d":"5.02"},{"v":1.25326886270392,"d":"1.25"}]
["g8557.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|77557165|gb|ABA99961.1|",{"$nulls":4},{"v":0.0213399796576982,"d":"0.02"},{"v":0.226933869777944,"d":"0.23"},{"v":0.549492283841898,"d":"0.55"},{"v":0.0939382831629963,"d":"0.09"}]
["g8562.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0.122807363457075,"d":"0.12"},{"v":0.0786327526196453,"d":"0.08"},{"v":0.781875546120425,"d":"0.78"},{"v":0.535194394803656,"d":"0.54"},null,"X"]
["g8579.t1",{"$nulls":6},"ARATHwo_AT5G25080.1","Sas10/Utp3/C1D family; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146), Exosome-associated factor Rrp47/DNA strand repair C1D (InterPro:IPR011082); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|O35473|C1D_MOUSE","Nuclear nucleic acid-binding protein C1D","gi|168010428|ref|XP_001757906.1|",null,null,"x","x",{"v":12.6852370505165,"d":"12.69"},{"v":5.96440867566736,"d":"5.96"},{"v":2.6358768827542,"d":"2.64"},{"v":1.47939381382765,"d":"1.48"}]
["g8595.t1",6457,51082,"0016272:0005829","protein folding","unfolded protein binding","prefoldin complex:cytosol","ARATHwo_AT1G08780.1","ABI3-interacting protein 3 (AIP3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin, subunit 4 (InterPro:IPR016661); Has 376 Blast hits to 375 proteins in 196 species: Archae - 2; Bacteria - 0; Metazoa - 120; Fungi - 130; Plants - 57; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).","sp|Q9M4C4|PFD4_AVEFA","Probable prefoldin subunit 4","gi|657992844|ref|XP_008388684.1|",null,null,"x","x",{"v":28.3244604117818,"d":"28.32"},{"v":93.5183544268068,"d":"93.52"},{"v":55.988871785006,"d":"55.99"},{"v":123.42279455372,"d":"123.42"}]
["g8611.t1",{"$nulls":8},"sp|P34761|WHI3_YEAST","Protein WHI3",{"$nulls":5},{"v":11.7753211369816,"d":"11.78"},{"v":2.85614355635688,"d":"2.86"},{"v":3.5820021873128,"d":"3.58"},{"v":4.33923865324301,"d":"4.34"}]
["g8627.t1",{"$nulls":13},"x","x",{"v":15.8186813229856,"d":"15.82"},{"v":9.86808901721301,"d":"9.87"},{"v":5.12171899913848,"d":"5.12"},{"v":6.60426028550062,"d":"6.60"}]
["g8646.t1",{"$nulls":6},"ARATHwo_AT4G19880.2","Glutathione S-transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT5G45020.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|P42620|YQJG_ECOLI","Glutathionyl-hydroquinone reductase YqjG","gi|703150298|ref|XP_010109824.1|",{"$nulls":4},{"v":103.482013286241,"d":"103.48"},{"v":25.6545708875074,"d":"25.65"},{"v":49.116152700561,"d":"49.12"},{"v":32.7931430579481,"d":"32.79"},null,"X"]
["g8663.t1",{"$nulls":13},"x","x",{"v":6.86177578895445,"d":"6.86"},{"v":3.08932303556155,"d":"3.09"},{"v":4.63857318737526,"d":"4.64"},{"v":8.43762787088282,"d":"8.44"}]
["g8005.t1",{"$nulls":8},"sp|Q6P7Q4|LGUL_RAT","Lactoylglutathione lyase","gi|703157830|ref|XP_010111828.1|"]
["g8022.t1",{"$nulls":19},"X",null,"X"]
["g8038.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0873977792653417,"d":"0.09"},{"v":0.046536899604442,"d":"0.05"},{"v":0,"d":"0.00"}]
["g60255.t1",{"$nulls":19},"X",null,"X"]
["g8056.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|4432807|gb|AAD20658.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0197886112536412,"d":"0.02"},{"v":0.097140176712866,"d":"0.10"},{"v":0,"d":"0.00"},"X"]
["g8074.t1","0006625:0008152","0017111:0000166",5777,"protein targeting to peroxisome:metabolic process","nucleoside-triphosphatase activity:nucleotide binding","peroxisome","ARATHwo_AT5G08470.1","an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.","sp|Q9FNP1|PEX1_ARATH","Peroxisome biogenesis protein 1","gi|548857057|gb|ERN14871.1|",null,null,"x","x",{"v":1.66977566515778,"d":"1.67"},{"v":2.210462450065,"d":"2.21"},{"v":1.77319667071663,"d":"1.77"},{"v":1.37476453041123,"d":"1.37"}]
["g8091.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0973339717536453,"d":"0.10"},{"v":0.562136456443456,"d":"0.56"},{"v":0.181593435548671,"d":"0.18"},"X",null,"X"]
["g8108.t1",44237,4672,null,"cellular metabolic process","protein kinase activity",null,"ARATHwo_AT2G19410.1","U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT5G57035.1); Has 118675 Blast hits to 117387 proteins in 4577 species: Archae - 133; Bacteria - 13900; Metazoa - 43121; Fungi - 9955; Plants - 33830; Viruses - 360; Other Eukaryotes - 17376 (source: NCBI BLink).","sp|Q8S8S7|PUB34_ARATH","U-box domain-containing protein 34","gi|125532955|gb|EAY79520.1|",null,null,"x","x",{"v":4.5585498127357,"d":"4.56"},{"v":10.8039159863974,"d":"10.80"},{"v":8.98658663834659,"d":"8.99"},{"v":6.92586281431472,"d":"6.93"}]
["g8133.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|502166307|ref|XP_004513853.1|",{"$nulls":4},{"v":0.0425706184945955,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.19326475658699,"d":"0.19"},{"v":0.0405464780277117,"d":"0.04"},"X"]
["g84026.t1",{"$nulls":13},"x","x"]
["g8146.t1",{"$nulls":6},"ARATHwo_AT3G47630.2","CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q96BW9|TAM41_HUMAN","Phosphatidate cytidylyltransferase, mitochondrial",{"$nulls":5},{"v":2.07718857981012,"d":"2.08"},{"v":1.7728243573542,"d":"1.77"},{"v":5.09278198860293,"d":"5.09"},{"v":1.64486499102784,"d":"1.64"},null,"X"]
["g8163.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|596015998|ref|XP_007218857.1|",{"$nulls":4},{"v":0.086183464703393,"d":"0.09"},{"v":0.0657762726490347,"d":"0.07"},{"v":0.562456783238875,"d":"0.56"},{"v":0.235480451561086,"d":"0.24"}]
["g8180.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":1.19276410560677,"d":"1.19"},{"v":3.26855821900393,"d":"3.27"},{"v":1.46582772936082,"d":"1.47"},null,"X","X"]
["g8190.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.714666255109067,"d":"0.71"},{"v":0.0917688039609193,"d":"0.09"}]
["g8216.t1",{"$nulls":6},"ARATHwo_AT1G18530.1","EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT3G25600.1); Has 21367 Blast hits to 15094 proteins in 1525 species: Archae - 2; Bacteria - 175; Metazoa - 8057; Fungi - 4921; Plants - 4996; Viruses - 2; Other Eukaryotes - 3214 (source: NCBI BLink).","sp|Q9FZ75|CML15_ARATH","Probable calcium-binding protein CML15",{"$nulls":3},"x","x",{"v":1.70236680801343,"d":"1.70"},{"v":6.24034820505852,"d":"6.24"},{"v":13.9498667862253,"d":"13.95"},{"v":14.0373068001759,"d":"14.04"}]
["g8230.t1"]
["g8247.t1",{"$nulls":13},"x","x",{"v":0.922731262986437,"d":"0.92"},{"v":5.75683853973031,"d":"5.76"},{"v":8.19871623307833,"d":"8.20"},{"v":5.76692326814077,"d":"5.77"}]
["g8263.t1",{"$nulls":6},"ARATHwo_AT2G38695.3","unknown protein; Has 56 Blast hits to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|302781210|ref|XP_002972379.1|",null,null,"x","x",{"v":4.41288689556558,"d":"4.41"},{"v":1.41790940589722,"d":"1.42"},{"v":0.583244321762763,"d":"0.58"},{"v":0.84590046994172,"d":"0.85"}]
["g8276.t1",{"$nulls":15},{"v":0.0595211362302024,"d":"0.06"},{"v":0.06710076140964,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g8289.t2",{"$nulls":15},{"v":13.3159248101619,"d":"13.32"},{"v":7.46894672712897,"d":"7.47"},{"v":0.144904993936628,"d":"0.14"},{"v":11.8988257409314,"d":"11.90"}]
["g8305.t1",19538,5524,9507,"protein metabolic process","ATP binding","chloroplast","ARATHwo_AT5G50920.1","Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. Association of Hsp93 with the inner envelope membrane through its N domain is important for the functions of Hsp93 in vivo.","sp|P31541|CLPAA_SOLLC","ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic","gi|302790788|ref|XP_002977161.1|",null,null,"x","x",{"v":143.984455789976,"d":"143.98"},{"v":76.2413233463546,"d":"76.24"},{"v":53.6273228508528,"d":"53.63"},{"v":60.7550536092302,"d":"60.76"}]
["g8323.t1",{"$nulls":6},"ARATHwo_AT5G24670.2","A protein coding gene with unknown function. The 5?UTR of this gene overlaps with a RNA coding gene TER2. TER2 (GenBank accession no. HQ401285) encodes a putative template sequence corresponding to 1.5 copies of the Arabidopsis telomere repeat (PNAS 2011, 108:73-78).","sp|Q561R2|ADAT3_RAT","Probable inactive tRNA-specific adenosine deaminase-like protein 3","gi|828317127|ref|XP_012572157.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.084278848105437,"d":"0.08"},{"v":0,"d":"0.00"},{"v":0.154201487337743,"d":"0.15"}]
["g8340.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.10741384282813,"d":"0.11"},{"v":0.181297844617572,"d":"0.18"},{"v":0,"d":"0.00"},null,"X","X"]
["g8347.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|642024080|emb|CDQ95089.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.179405724569575,"d":"0.18"},{"v":0.111091758940761,"d":"0.11"},{"v":0,"d":"0.00"}]
["g8367.t1",16310,16301,null,"phosphorylation","kinase activity",null,"ARATHwo_AT5G50330.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G24810.2); Has 9594 Blast hits to 9572 proteins in 1815 species: Archae - 124; Bacteria - 4421; Metazoa - 409; Fungi - 573; Plants - 708; Viruses - 16; Other Eukaryotes - 3343 (source: NCBI BLink).","sp|Q5M7P6|ADCK1_XENTR","Uncharacterized aarF domain-containing protein kinase 1","gi|703132675|ref|XP_010105182.1|",null,null,"x","x",{"v":2.37714410169555,"d":"2.38"},{"v":0.944856600327848,"d":"0.94"},{"v":2.97424069901292,"d":"2.97"},{"v":0.662745565506313,"d":"0.66"}]
["g8384.t1",90501,"0004540:0003723:0004527",null,"RNA phosphodiester bond hydrolysis","ribonuclease activity:RNA binding:exonuclease activity",null,"ARATHwo_AT2G17510.2","EMBRYO DEFECTIVE 2763 (EMB2763); FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide binding protein, PINc (InterPro:IPR006596), Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: Ribonuclease II/R family protein (TAIR:AT1G77680.1).","sp|Q9Y2L1|RRP44_HUMAN","Exosome complex exonuclease RRP44","gi|720046469|ref|XP_010270516.1|",{"$nulls":4},{"v":11.5506075103715,"d":"11.55"},{"v":9.45048774426595,"d":"9.45"},{"v":7.72713608212283,"d":"7.73"},{"v":19.113815834188,"d":"19.11"}]
["g60775.t1",{"$nulls":8},"sp|P93194|RPK1_IPONI","Receptor-like protein kinase",{"$nulls":3},"x","x",{"v":7.8129441610807,"d":"7.81"},{"v":16.0777830461291,"d":"16.08"},{"v":11.1098177731789,"d":"11.11"},{"v":4.57619276556004,"d":"4.58"}]
["g8411.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|923522971|ref|XP_013673968.1|"]
["g8428.t1",{"$nulls":8},"sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|923851487|ref|XP_013704088.1|",{"$nulls":4},{"v":134.871561028221,"d":"134.87"},{"v":20.5995243730515,"d":"20.60"},{"v":13.9914795652725,"d":"13.99"},{"v":2.02581770182497,"d":"2.03"},null,"X"]
["g8431.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|242075144|ref|XP_002447508.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.152427845313299,"d":"0.15"},{"v":0.032034364265499,"d":"0.03"}]
["g8451.t1",{"$nulls":6},"ARATHwo_AT5G04290.1","Encodes SPT5-Like, a member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs. Interacts with AGO4. Required for RNA-directed DNA methylation.","sp|F4JW79|RDM3_ARATH","Protein RNA-directed DNA methylation 3",{"$nulls":5},{"v":72.4014588821083,"d":"72.40"},{"v":253.400474219202,"d":"253.40"},{"v":2.26605992189021,"d":"2.27"},{"v":0,"d":"0.00"}]
["g8452.t1","0016117:0055114",16705,9507,"carotenoid biosynthetic process:oxidation-reduction process","oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","chloroplast","ARATHwo_AT2G32640.1","Lycopene beta/epsilon cyclase protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta/epsilon cyclase (InterPro:IPR008671); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",null,null,"gi|225447101|ref|XP_002273536.1|",null,null,"x","x"]
["g8469.t1",6259,"0046872:0003824",null,"DNA metabolic process","metal ion binding:catalytic activity",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923851487|ref|XP_013704088.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0270755146558904,"d":"0.03"},{"v":0.143658194874219,"d":"0.14"},{"v":0,"d":"0.00"},"X"]
["g8486.t1",{"$nulls":10},"gi|909992442|gb|KNG49897.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0440165918311408,"d":"0.04"},{"v":0.0514192417144607,"d":"0.05"},{"v":0,"d":"0.00"},"X"]
["g8503.t1",8152,16787,null,"metabolic process","hydrolase activity",null,"ARATHwo_AT3G50050.1","Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G43100.1); Has 5152 Blast hits to 5136 proteins in 391 species: Archae - 0; Bacteria - 0; Metazoa - 1866; Fungi - 764; Plants - 2030; Viruses - 0; Other Eukaryotes - 492 (source: NCBI BLink).","sp|Q766C2|NEP2_NEPGR","Aspartic proteinase nepenthesin-2","gi|734433813|gb|KHN47012.1|",null,null,"x","x",{"v":3.52334206412029,"d":"3.52"},{"v":0.797594085060744,"d":"0.80"},{"v":1.27948680810471,"d":"1.28"},{"v":2.37434946385814,"d":"2.37"}]
["g8515.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.801426337459953,"d":"0.80"},{"v":0.0913206077800657,"d":"0.09"}]
["g8531.t1",{"$nulls":10},"gi|643716624|gb|KDP28250.1|",null,null,"x","x",{"v":0.231513470240684,"d":"0.23"},{"v":0,"d":"0.00"},{"v":0.08546383492085,"d":"0.09"},{"v":1.44410142404008,"d":"1.44"}]
["g8548.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|923640752|ref|XP_013641152.1|",{"$nulls":4},{"v":0.0362675207968687,"d":"0.04"},{"v":0.63666854563607,"d":"0.64"},{"v":0.402196454830072,"d":"0.40"},{"v":0.662371880209443,"d":"0.66"}]
["g8677.t1",{"$nulls":13},"x","x",{"v":0.600000884997275,"d":"0.60"},{"v":1.65166328230167,"d":"1.65"},{"v":0.295401793607192,"d":"0.30"},{"v":1.73082566824452,"d":"1.73"}]
["g8703.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT2G19410.1","U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT5G57035.1); Has 118675 Blast hits to 117387 proteins in 4577 species: Archae - 133; Bacteria - 13900; Metazoa - 43121; Fungi - 9955; Plants - 33830; Viruses - 360; Other Eukaryotes - 17376 (source: NCBI BLink).","sp|Q8S8S7|PUB34_ARATH","U-box domain-containing protein 34","gi|694394977|ref|XP_009372840.1|"]
["g8711.t1",{"$nulls":10},"gi|297599295|ref|NP_001046945.2|",{"$nulls":8},"X"]
["g8728.t1",{"$nulls":15},{"v":19.9863944992173,"d":"19.99"},{"v":0.786139663229945,"d":"0.79"},{"v":1.79308131237391,"d":"1.79"},{"v":0.489544608309676,"d":"0.49"}]
["g8746.t1",{"$nulls":10},"gi|761926760|gb|KIY47966.1|"]
["g8754.t1"]
["g8781.t1",{"$nulls":8},"sp|Q5RBK0|GIN1_PONAB","Gypsy retrotransposon integrase-like protein 1","gi|514689314|ref|XP_004992232.1|",{"$nulls":4},{"v":0.0135463167865289,"d":"0.01"},{"v":0.046882498769567,"d":"0.05"},{"v":0.271123455544255,"d":"0.27"},{"v":0.190832121901624,"d":"0.19"},"X"]
["g8787.t1","0055114:0045892","0016491:0010181",null,"oxidation-reduction process:negative regulation of transcription, DNA-dependent","oxidoreductase activity:FMN binding",null,"ARATHwo_AT4G27270.1","Quinone reductase family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: negative regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), NADPH-dependent FMN reductase (InterPro:IPR005025), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: flavodoxin-like quinone reductase 1 (TAIR:AT5G54500.1); Has 3487 Blast hits to 3484 proteins in 1099 species: Archae - 83; Bacteria - 2629; Metazoa - 2; Fungi - 274; Plants - 205; Viruses - 1; Other Eukaryotes - 293 (source: NCBI BLink).","sp|Q9LSQ5|FQR1_ARATH","NAD(P)H dehydrogenase (quinone) FQR1","gi|702319647|ref|XP_010052473.1|",null,"x",null,"x",{"v":19.5682169830997,"d":"19.57"},{"v":9.11031909289579,"d":"9.11"},{"v":23.3790017971223,"d":"23.38"},{"v":0.526218108173693,"d":"0.53"}]
["g8804.t1",{"$nulls":6},"ARATHwo_AT1G60460.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|548842474|gb|ERN02404.1|",null,null,"x","x",{"v":0.527580425984788,"d":"0.53"},{"v":0.217029879079521,"d":"0.22"},{"v":0.239207407368581,"d":"0.24"},{"v":1.454033684505,"d":"1.45"}]
["g84672.t1",6313,"0004803:0003677",null,"transposition, DNA-mediated","transposase activity:DNA binding",{"$nulls":3},"sp|P19834|YI11_STRC2","Insertion element IS116 uncharacterized 44.8 kDa protein","gi|511069267|ref|WP_016310842.1|",{"$nulls":8},"X",null,null,"g84672"]
["g8831.t1",{"$nulls":8},"sp|O92815|POL_WDSV","Gag-Pol polyprotein","gi|384490483|gb|EIE81705.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.257216557634181,"d":"0.26"},{"v":0,"d":"0.00"}]
["g8848.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|390366728|ref|XP_003731101.1|",{"$nulls":8},"X"]
["g8865.t2",{"$nulls":10},"gi|857971826|emb|CEP01920.1|",{"$nulls":4},{"v":0.0251323767216932,"d":"0.03"},{"v":0.20274362257574,"d":"0.20"},{"v":0.239986576214492,"d":"0.24"},{"v":0.104922142450849,"d":"0.10"}]
["g8877.t1",{"$nulls":8},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10",{"$nulls":5},{"v":3.0643520524742,"d":"3.06"},{"v":2.49920125047739,"d":"2.50"},{"v":12.8217543770149,"d":"12.82"},{"v":2.43336166072557,"d":"2.43"},null,"X"]
["g8893.t2",null,46872,null,null,"metal ion binding",null,"ARATHwo_AT3G53410.1","Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export.","sp|Q9LFH6|LUL2_ARATH","Probable E3 ubiquitin-protein ligase LUL2","gi|302802113|ref|XP_002982812.1|",null,null,"x","x",{"v":14.425841687004,"d":"14.43"},{"v":17.553748799285,"d":"17.55"},{"v":26.7988518769244,"d":"26.80"},{"v":18.3649384012787,"d":"18.36"}]
["g8910.t1","0006812:0055085",null,null,"cation transport:transmembrane transport",null,null,"ARATHwo_AT2G04620.1","Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9SI03|MTP12_ARATH","Metal tolerance protein 12","gi|727412761|ref|XP_010497053.1|",null,null,"x","x",{"v":7.79615017188508,"d":"7.80"},{"v":17.3882315409072,"d":"17.39"},{"v":16.5611902926319,"d":"16.56"},{"v":11.0851845530924,"d":"11.09"}]
["g84786.t1",{"$nulls":8},"sp|Q9HCD5|NCOA5_HUMAN","Nuclear receptor coactivator 5",{"$nulls":5},{"v":1.33317873984681,"d":"1.33"},{"v":2.62465585757728,"d":"2.62"},{"v":2.51921016568512,"d":"2.52"},{"v":2.03891688778645,"d":"2.04"},"X"]
["g8936.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|915123359|ref|XP_013332943.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.100199184797969,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X"]
["g8951.t1",42787,"0016874:0004842","0009506:0016020:0005634:0005829:0005739:0000151","protein ubiquitination involved in ubiquitin-dependent protein catabolic process","ligase activity:ubiquitin-protein ligase activity","plasmodesma:membrane:nucleus:cytosol:mitochondrion:ubiquitin ligase complex","ARATHwo_AT1G55860.1","encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.","sp|Q8GY23|UPL1_ARATH","E3 ubiquitin-protein ligase UPL1","gi|302815251|ref|XP_002989307.1|",{"$nulls":4},{"v":1.19263317360099,"d":"1.19"},{"v":6.75985914503553,"d":"6.76"},{"v":7.99267985485741,"d":"7.99"},{"v":14.3459618785993,"d":"14.35"}]
["g8969.t1",{"$nulls":6},"ARATHwo_AT2G25490.1","Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3.","sp|Q9SKK0|EBF1_ARATH","EIN3-binding F-box protein 1","gi|168062255|ref|XP_001783097.1|",null,null,"x","x",{"v":0.839396099605445,"d":"0.84"},{"v":3.14691179031638,"d":"3.15"},{"v":4.12645078586398,"d":"4.13"},{"v":2.93189462643417,"d":"2.93"}]
["g8976.t3",{"$nulls":8},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10",{"$nulls":5},{"v":1.93504009462608,"d":"1.94"},{"v":1.51094165731995,"d":"1.51"},{"v":1.45827336066689,"d":"1.46"},{"v":1.42256529705973,"d":"1.42"}]
["g8993.t1",19344,5543,5886,"cysteine biosynthetic process","phospholipid binding","plasma membrane","ARATHwo_AT5G35180.4","FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: ENHANCED DISEASE RESISTANCE 2 (TAIR:AT4G19040.1); Has 454 Blast hits to 426 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 378; Viruses - 2; Other Eukaryotes - 71 (source: NCBI BLink).","sp|F4JSE7|EDR2_ARATH","Protein ENHANCED DISEASE RESISTANCE 2","gi|728839212|gb|KHG18655.1|",null,null,"x","x",{"v":3.01285330750117,"d":"3.01"},{"v":8.83122827746949,"d":"8.83"},{"v":7.84466525141688,"d":"7.84"},{"v":13.1641954880944,"d":"13.16"}]
["g9017.t1",10264,null,"0005576:0009507","myo-inositol hexakisphosphate biosynthetic process",null,"extracellular region:chloroplast","ARATHwo_AT2G37240.1","Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G65840.1); Has 368 Blast hits to 368 proteins in 75 species: Archae - 0; Bacteria - 23; Metazoa - 194; Fungi - 17; Plants - 121; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).","sp|Q9ZUU2|AAED1_ARATH","Thioredoxin-like protein AAED1, chloroplastic","gi|18404359|ref|NP_030274.1|",{"$nulls":4},{"v":8.9530152011474,"d":"8.95"},{"v":1.17548250433231,"d":"1.18"},{"v":2.04953438034851,"d":"2.05"},{"v":0.726737101824798,"d":"0.73"}]
["g84973.t1",null,null,44444,null,null,"cytoplasmic part","ARATHwo_AT3G18790.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink).","sp|Q69ZQ2|ISY1_MOUSE","Pre-mRNA-splicing factor ISY1 homolog","gi|168041256|ref|XP_001773108.1|",null,null,"x","x",{"v":14.152892256864,"d":"14.15"},{"v":6.36850763438904,"d":"6.37"},{"v":2.59472706989464,"d":"2.59"},{"v":5.36357614647595,"d":"5.36"}]
["g9040.t1",{"$nulls":6},"ARATHwo_AT5G19730.1","Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q8VYZ3|PME53_ARATH","Probable pectinesterase 53","gi|695037368|ref|XP_009406173.1|",null,null,"x","x",{"v":18.9553994122491,"d":"18.96"},{"v":132.978102765272,"d":"132.98"},{"v":22.9564929363966,"d":"22.96"},{"v":5.58237821804944,"d":"5.58"}]
["g9057.t1"]
["g85027.t1",{"$nulls":6},"ARATHwo_AT2G47450.1","A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1.","sp|Q5R6X7|CBX3_PONAB","Chromobox protein homolog 3","gi|751830666|emb|CEL56723.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.610244619571747,"d":"0.61"},{"v":2.16542287982524,"d":"2.17"},{"v":0.130248133998436,"d":"0.13"},"X"]
["g9073.t1","0045893:0016226:0010207:0009073",null,9507,"positive regulation of transcription, DNA-dependent:iron-sulfur cluster assembly:photosystem II assembly:aromatic amino acid family biosynthetic process",null,"chloroplast","ARATHwo_AT5G52960.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|116784647|gb|ABK23420.1|",null,"x","x","x",{"v":70.5094231313244,"d":"70.51"},{"v":13.8809374341518,"d":"13.88"},{"v":9.26170306200814,"d":"9.26"},{"v":25.9174701306302,"d":"25.92"}]
["g9097.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.382346672517597,"d":"0.38"},{"v":0.839473222910331,"d":"0.84"},{"v":0,"d":"0.00"},"X",null,"X"]
["g9109.t1",{"$nulls":6},"ARATHwo_AT1G19025.1","DNA repair metallo-beta-lactamase family protein; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT1G27410.1); Has 1078 Blast hits to 1060 proteins in 342 species: Archae - 34; Bacteria - 280; Metazoa - 259; Fungi - 220; Plants - 166; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).","sp|Q9H816|DCR1B_HUMAN","5' exonuclease Apollo","gi|661891765|emb|CDP04690.1|",{"$nulls":4},{"v":0.372190620401036,"d":"0.37"},{"v":0.903534089793633,"d":"0.90"},{"v":1.07441854960956,"d":"1.07"},{"v":0.0819856454702027,"d":"0.08"}]
["g9126.t1",6259,5488,null,"DNA metabolic process","binding",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|87162498|gb|ABD28293.1|",{"$nulls":4},{"v":0.0342139835794479,"d":"0.03"},{"v":0.480053050145711,"d":"0.48"},{"v":0.785789610648167,"d":"0.79"},{"v":0.162627312092209,"d":"0.16"},null,"X"]
["g9142.t1",{"$nulls":13},"x","x",{"v":11.2840847737759,"d":"11.28"},{"v":16.734127707148,"d":"16.73"},{"v":9.77070417074358,"d":"9.77"},{"v":1.80199465080998,"d":"1.80"}]
["g9153.t1",{"$nulls":8},"sp|P0C6U3|R1A_CVHN1","Replicase polyprotein 1a",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.299454504047913,"d":"0.30"},{"v":0,"d":"0.00"}]
["g9166.t1",{"$nulls":10},"gi|558124244|ref|XP_006114866.1|",{"$nulls":8},"X"]
["g9183.t1",{"$nulls":10},"gi|582957989|gb|EWC46201.1|",null,"x",null,"x",{"v":2.44400783341929,"d":"2.44"},{"v":0.263580463570619,"d":"0.26"},{"v":3.42619165244966,"d":"3.43"},{"v":0.246620262601908,"d":"0.25"}]
["g9201.t1",{"$nulls":10},"gi|546301773|ref|XP_005711507.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.086894234962767,"d":"0.09"},{"v":0.369692871097678,"d":"0.37"},{"v":0.314863994208411,"d":"0.31"},null,"X"]
["g9218.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|861612721|gb|KMQ85528.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.1874082442095,"d":"0.19"},{"v":0.981636131727821,"d":"0.98"},{"v":0.221061884453893,"d":"0.22"},"X"]
["g10763.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|590613116|ref|XP_007022574.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.275950995308237,"d":"0.28"},{"v":0.448461333445963,"d":"0.45"},{"v":0.049607692139452,"d":"0.05"},null,"X"]
["g10778.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|242095626|ref|XP_002438303.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0760594727613633,"d":"0.08"},{"v":0.979878078098985,"d":"0.98"},{"v":0.360642477380562,"d":"0.36"}]
["g10779.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.208865221548203,"d":"0.21"},{"v":2.38353315203751,"d":"2.38"},{"v":0.10420668107155,"d":"0.10"},"X",null,"X"]
["g10796.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0706910348863933,"d":"0.07"},{"v":0.716402114222105,"d":"0.72"},{"v":0.214939109484242,"d":"0.21"},"X"]
["g10811.t1",{"$nulls":15},{"v":0.308181651028175,"d":"0.31"},{"v":0.259515471636474,"d":"0.26"},{"v":0.099971698435702,"d":"0.10"},{"v":0,"d":"0.00"}]
["g11874.t1",{"$nulls":15},{"v":0.0315655280354984,"d":"0.03"},{"v":0.0422849375101467,"d":"0.04"},{"v":0.149829679481659,"d":"0.15"},{"v":0,"d":"0.00"}]
["g11893.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q8IID4|DYHC2_PLAF7","Dynein heavy chain-like protein PF11_0240","gi|674885531|emb|CDY47004.1|",{"$nulls":4},{"v":10.616796262255,"d":"10.62"},{"v":5.21705981452672,"d":"5.22"},{"v":7.72405478867233,"d":"7.72"},{"v":6.74897929249414,"d":"6.75"}]
["g10832.t1",{"$nulls":6},"ARATHwo_AT4G29440.1","Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT2G19710.1); Has 13682 Blast hits to 8543 proteins in 697 species: Archae - 14; Bacteria - 1875; Metazoa - 6005; Fungi - 2284; Plants - 648; Viruses - 80; Other Eukaryotes - 2776 (source: NCBI BLink).","sp|Q9CX00|IST1_MOUSE","IST1 homolog","gi|325188656|emb|CCA23187.1|",null,null,"x","x",{"v":1.28758405522936,"d":"1.29"},{"v":0.785186130193345,"d":"0.79"},{"v":0.586267157272844,"d":"0.59"},{"v":0,"d":"0.00"}]
["g10850.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.678196433096539,"d":"0.68"},{"v":2.092512625707,"d":"2.09"},{"v":0.473492843989847,"d":"0.47"},"X",null,"X"]
["g10867.t1",null,null,9536,null,null,"plastid","ARATHwo_AT3G59870.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43945.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).",null,null,"gi|168040098|ref|XP_001772532.1|",{"$nulls":4},{"v":24.5978299952732,"d":"24.60"},{"v":11.040056431803,"d":"11.04"},{"v":10.9726125647975,"d":"10.97"},{"v":6.88027002094909,"d":"6.88"}]
["g10878.t1",null,null,9507,null,null,"chloroplast","ARATHwo_AT5G04440.1","Protein of unknown function (DUF1997); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT4G31115.1); Has 266 Blast hits to 266 proteins in 73 species: Archae - 0; Bacteria - 111; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).",null,null,"gi|568863760|ref|XP_006485299.1|",null,null,"x","x",{"v":30.7408902382558,"d":"30.74"},{"v":38.3953923383696,"d":"38.40"},{"v":11.831161491075,"d":"11.83"},{"v":1.31955391900325,"d":"1.32"}]
["g10900.t1",{"$nulls":8},"sp|Q8AII1|POL_SIVTN","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.38971121708676,"d":"1.39"},{"v":0.775769100431615,"d":"0.78"},"X"]
["g10913.t1",{"$nulls":6},"ARATHwo_AT1G22860.1","Vacuolar sorting protein 39; FUNCTIONS IN: small GTPase regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Citron-like (InterPro:IPR001180), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (InterPro:IPR019452), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (InterPro:IPR019453); Has 401 Blast hits to 372 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 168; Fungi - 105; Plants - 74; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).","sp|Q8WUH2|TGFA1_HUMAN","Transforming growth factor-beta receptor-associated protein 1","gi|661878643|emb|CDP17599.1|",null,null,"x","x",{"v":3.44150950216309,"d":"3.44"},{"v":4.35740473486431,"d":"4.36"},{"v":3.00882900246404,"d":"3.01"},{"v":11.3197404026732,"d":"11.32"}]
["g10930.t1"]
["g85372.t1",{"$nulls":13},"x","x",{"v":21.8619003938769,"d":"21.86"},{"v":7.32731325408935,"d":"7.33"},{"v":7.7820807132474,"d":"7.78"},{"v":4.2026469294803,"d":"4.20"}]
["g10948.t1"]
["g85454.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.119894739305245,"d":"0.12"},{"v":0,"d":"0.00"},"X",null,"X"]
["g10975.t1",{"$nulls":6},"ARATHwo_AT3G01410.1","Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 3179 Blast hits to 3179 proteins in 588 species: Archae - 77; Bacteria - 1109; Metazoa - 13; Fungi - 0; Plants - 1505; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).","sp|P64956|Y2253_MYCBO","Uncharacterized protein Mb2253c","gi|921165674|ref|WP_053111515.1|",{"$nulls":4},{"v":4.05454115103897,"d":"4.05"},{"v":2.04092350773129,"d":"2.04"},{"v":0.577957572208847,"d":"0.58"},{"v":1.92917534626307,"d":"1.93"}]
["g10991.t1",{"$nulls":10},"gi|795013585|ref|XP_011883584.1|",{"$nulls":8},"X"]
["g11008.t1","0006099:0044262",4108,null,"tricarboxylic acid cycle:cellular carbohydrate metabolic process","citrate (Si)-synthase activity",null,"ARATHwo_AT2G44350.2","encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.","sp|P49298|CISY_CITMA","Citrate synthase, mitochondrial","gi|302784714|ref|XP_002974129.1|",null,null,"x","x",{"v":9.20967246412388,"d":"9.21"},{"v":8.17171889314941,"d":"8.17"},{"v":5.97569725479784,"d":"5.98"},{"v":64.9674285015549,"d":"64.97"}]
["g11025.t1",null,null,5856,null,null,"cytoskeleton",null,null,"sp|Q29P71|MYO7A_DROPS","Myosin-VIIa","gi|302786558|ref|XP_002975050.1|",null,null,"x","x",{"v":0.0323175596168781,"d":"0.03"},{"v":0.0959555478086747,"d":"0.10"},{"v":11.7953420516526,"d":"11.80"},{"v":0,"d":"0.00"}]
["g11034.t1",{"$nulls":12},"x","x","x",{"v":73.3848731956433,"d":"73.38"},{"v":61.8386693164728,"d":"61.84"},{"v":32.6677360035541,"d":"32.67"},{"v":7.25389216701956,"d":"7.25"}]
["g11045.t1",{"$nulls":6},"ARATHwo_AT2G44860.1","Ribosomal protein L24e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988), TRASH (InterPro:IPR011017); BEST Arabidopsis thaliana protein match is: Ribosomal protein L24e family protein (TAIR:AT3G53020.1); Has 1527 Blast hits to 1527 proteins in 399 species: Archae - 307; Bacteria - 5; Metazoa - 446; Fungi - 310; Plants - 198; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).","sp|O22165|RLP24_ARATH","Probable ribosome biogenesis protein RLP24","gi|168061800|ref|XP_001782874.1|",null,"x","x","x",{"v":218.57786420727,"d":"218.58"},{"v":49.7942014511641,"d":"49.79"},{"v":32.9097962882739,"d":"32.91"},{"v":41.6213909485314,"d":"41.62"}]
["g11062.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|645233554|ref|XP_008223402.1|",{"$nulls":8},"X"]
["g11080.t1"]
["g11097.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.100901272444488,"d":"0.10"},{"v":0.38720292340856,"d":"0.39"},{"v":0,"d":"0.00"},"X",null,"X"]
["g11106.t1",6810,5215,16021,"transport","transporter activity","integral to membrane","ARATHwo_AT1G61800.1","glucose6-Phosphate/phosphate transporter 2. Expression is upregulated in the shoot of cax1/cax3 mutant.","sp|Q94B38|GPT2_ARATH","Glucose-6-phosphate/phosphate translocator 2, chloroplastic","gi|743759163|ref|XP_010930664.1|",{"$nulls":4},{"v":1.39040192532302,"d":"1.39"},{"v":9.51862737259279,"d":"9.52"},{"v":33.381831486803,"d":"33.38"},{"v":2.71918436349497,"d":"2.72"}]
["g11123.t1",{"$nulls":15},{"v":0.340987536595037,"d":"0.34"},{"v":0.0798368442499027,"d":"0.08"},{"v":0.0887411746544377,"d":"0.09"},{"v":0,"d":"0.00"}]
["g11141.t1",{"$nulls":6},"ARATHwo_AT4G21970.1","Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT4G04630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|225444511|ref|XP_002274403.1|",{"$nulls":4},{"v":3.49086324437466,"d":"3.49"},{"v":2.92852743175259,"d":"2.93"},{"v":1.61786541857781,"d":"1.62"},{"v":2.64978213156203,"d":"2.65"}]
["g11157.t1",{"$nulls":8},"sp|A2AWL7|MGAP_MOUSE","MAX gene-associated protein",{"$nulls":5},{"v":21.4257564447555,"d":"21.43"},{"v":25.2657047152555,"d":"25.27"},{"v":49.4300703615028,"d":"49.43"},{"v":66.3137373586207,"d":"66.31"},"X"]
["g11172.t1",null,null,"0005739:0016020",null,null,"mitochondrion:membrane","ARATHwo_AT3G13772.1","Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. Overexpression of this protein in yeast alters copper and zinc homeostasis.","sp|Q9LIC2|TMN7_ARATH","Transmembrane 9 superfamily member 7","gi|901806023|gb|KMZ63397.1|",null,null,"x","x",{"v":19.4134931711752,"d":"19.41"},{"v":63.5632286774143,"d":"63.56"},{"v":41.1395562791694,"d":"41.14"},{"v":34.2991180607935,"d":"34.30"}]
["g11189.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.206869472437566,"d":"0.21"},{"v":0.110664257622676,"d":"0.11"},{"v":0,"d":"0.00"},null,"X","X"]
["g11201.t1",{"$nulls":6},"ARATHwo_AT2G01830.2","Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659121350|ref|XP_008460615.1|",{"$nulls":9},"X"]
["g11216.t1"]
["g11233.t1","0010413:0045492",16740,"0016020:0005794","glucuronoxylan metabolic process:xylan biosynthetic process","transferase activity","membrane:Golgi apparatus","ARATHwo_AT1G67410.1","Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT1G74680.1); Has 1249 Blast hits to 1240 proteins in 88 species: Archae - 0; Bacteria - 6; Metazoa - 115; Fungi - 4; Plants - 1041; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).","sp|Q5IGR6|EXT1C_DANRE","Exostosin-1c","gi|848923316|ref|XP_012857996.1|"]
["g62618.t1",{"$nulls":15},{"v":0.0390824114867492,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.0503334479348363,"d":"0.05"},{"v":0.311222557205011,"d":"0.31"}]
["g11899.t1","0006098:0009793:0015995:0016226:0019288:0010228:0006364:0048481:0010027",null,9543,"pentose-phosphate shunt:embryo development ending in seed dormancy:chlorophyll biosynthetic process:iron-sulfur cluster assembly:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:vegetative to reproductive phase transition of meristem:rRNA processing:ovule development:thylakoid membrane organization",null,"chloroplast thylakoid lumen","ARATHwo_AT5G52970.1","thylakoid lumen 15.0 kDa protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9LVV5|TL15B_ARATH","Thylakoid lumenal 15.0 kDa protein 2, chloroplastic","gi|302822446|ref|XP_002992881.1|",null,null,"x","x",{"v":44.5949442295201,"d":"44.59"},{"v":21.3937013034546,"d":"21.39"},{"v":10.1049620431349,"d":"10.10"},{"v":0.931079742521899,"d":"0.93"}]
["g11904.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727591423|ref|XP_010468773.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.189160396468889,"d":"0.19"},{"v":0.161095273889804,"d":"0.16"},"X"]
["g11933.t1"]
["g12412.t1",null,"0016491:0005488",null,null,"oxidoreductase activity:binding",null,"ARATHwo_AT5G44620.1","member of CYP706A","sp|Q947B7|MFS_MENPI","(+)-menthofuran synthase","gi|242059003|ref|XP_002458647.1|",{"$nulls":4},{"v":2.61499126759105,"d":"2.61"},{"v":0.257287709892472,"d":"0.26"},{"v":8.21059383025035,"d":"8.21"},{"v":0.298028488977125,"d":"0.30"},null,"X"]
["g12430.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|815793864|ref|XP_012217561.1|",{"$nulls":9},"X"]
["g12447.t1",{"$nulls":8},"sp|Q09575|YRD6_CAEEL","Uncharacterized protein K02A2.6","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.110669393080657,"d":"0.11"},{"v":0.367240854400957,"d":"0.37"},{"v":0.201350558285327,"d":"0.20"},"X"]
["g12455.t1",{"$nulls":15},{"v":0.102834894198435,"d":"0.10"},{"v":0.175488100987966,"d":"0.18"},{"v":1.43113414378975,"d":"1.43"},{"v":0.467625613179676,"d":"0.47"},"X",null,"X"]
["g12483.t1"]
["g12500.t1",{"$nulls":6},"ARATHwo_AT5G04500.1","a member of the Glycosyltransferase Family 64 (according to CAZy Database)","sp|P70428|EXT2_MOUSE","Exostosin-2","gi|168052406|ref|XP_001778641.1|",{"$nulls":4},{"v":0.116333712034775,"d":"0.12"},{"v":0.0553167629730693,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g12501.t1"]
["g12518.t1",55085,22857,16020,"transmembrane transport","transmembrane transporter activity","membrane","ARATHwo_AT5G45380.1","DEGRADATION OF UREA 3 (DUR3); CONTAINS InterPro DOMAIN/s: Sodium/solute symporter, subgroup (InterPro:IPR019900), Sodium/solute symporter (InterPro:IPR001734); Has 9388 Blast hits to 9377 proteins in 1702 species: Archae - 173; Bacteria - 6389; Metazoa - 719; Fungi - 340; Plants - 51; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).","sp|F4KD71|DUR3_ARATH","Urea-proton symporter DUR3","gi|567167850|ref|XP_006398212.1|",{"$nulls":4},{"v":29.3852252507369,"d":"29.39"},{"v":4.90314382444929,"d":"4.90"},{"v":7.95793161359808,"d":"7.96"},{"v":0.0934899255228417,"d":"0.09"}]
["g12541.t1",44710,16620,null,"single-organism metabolic process","oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor",null,"ARATHwo_AT1G79440.1","Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).","sp|Q88RC0|DAVD_PSEPK","Glutarate-semialdehyde dehydrogenase DavD","gi|729316688|ref|XP_010532004.1|",{"$nulls":4},{"v":16.6074704409053,"d":"16.61"},{"v":1.2835371153512,"d":"1.28"},{"v":0.942463750822591,"d":"0.94"},{"v":29.3511166783422,"d":"29.35"}]
["g12553.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",16020,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|77552016|gb|ABA94813.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.347535546205131,"d":"0.35"},{"v":1.1832677740558,"d":"1.18"},{"v":0.431100822723351,"d":"0.43"},"X"]
["g11948.t1"]
["g11966.t1",{"$nulls":6},"ARATHwo_AT3G50370.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink).",{"$nulls":7},{"v":0.236241929376159,"d":"0.24"},{"v":0.455261151634128,"d":"0.46"},{"v":2.17181226103242,"d":"2.17"},{"v":0.486127440448901,"d":"0.49"},"X"]
["g11983.t1",{"$nulls":13},"x","x",{"v":0,"d":"0.00"},{"v":0.33691015424883,"d":"0.34"},{"v":0.291587929415675,"d":"0.29"},{"v":0.268673012749442,"d":"0.27"}]
["g11993.t1","0044763:0006950:0055114:0006091","0016209:0016684",5739,"single-organism cellular process:response to stress:oxidation-reduction process:generation of precursor metabolites and energy","antioxidant activity:oxidoreductase activity, acting on peroxide as acceptor","mitochondrion","ARATHwo_AT3G06050.1","Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.","sp|Q9SDD6|PRX2F_ORYSJ","Peroxiredoxin-2F, mitochondrial","gi|116792304|gb|ABK26311.1|",null,"x","x","x",{"v":74.4098723226276,"d":"74.41"},{"v":136.851498668783,"d":"136.85"},{"v":47.7341039983323,"d":"47.73"},{"v":408.168661892545,"d":"408.17"}]
["g12009.t1",{"$nulls":6},"ARATHwo_AT2G28130.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",null,null,"gi|674251939|gb|KFK44704.1|",null,null,"x","x",{"v":2.11244588949902,"d":"2.11"},{"v":1.8417392863837,"d":"1.84"},{"v":3.80683472720011,"d":"3.81"},{"v":2.72605814314851,"d":"2.73"}]
["g12024.t1"]
["g85969.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.1634106093016,"d":"0.16"},{"v":0.547246627220282,"d":"0.55"},null,"X","X"]
["g12048.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.152771160217408,"d":"0.15"},{"v":0.0555086047290597,"d":"0.06"}]
["g12063.t2",{"$nulls":10},"gi|923129521|ref|XP_013758226.1|",null,null,"x","x",{"v":0.111168217894134,"d":"0.11"},{"v":0.0844907281700273,"d":"0.08"},{"v":24.4750537090443,"d":"24.48"},{"v":0.9753722975866,"d":"0.98"}]
["g12080.t1",null,null,16021,null,null,"integral to membrane","ARATHwo_AT4G37680.1","heptahelical transmembrane protein HHP4","sp|Q10PI5|ADPO3_ORYSJ","Heptahelical transmembrane protein ADIPOR3","gi|302803339|ref|XP_002983423.1|",null,null,"x","x",{"v":1.95328216215762,"d":"1.95"},{"v":34.2134046761973,"d":"34.21"},{"v":7.24513522276018,"d":"7.25"},{"v":8.15471729405045,"d":"8.15"}]
["g12097.t1",{"$nulls":8},"sp|P56823|HCYG_HELPO","Hemocyanin, beta-C chain unit G","gi|108885034|gb|ABG23081.1|",null,null,"x","x",{"v":31.2395307345028,"d":"31.24"},{"v":92.7337809820534,"d":"92.73"},{"v":23.9613063169079,"d":"23.96"},{"v":0.108195577735222,"d":"0.11"}]
["g12109.t1"]
["g12126.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|727591423|ref|XP_010468773.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0214657431845532,"d":"0.02"},{"v":0.395464452847804,"d":"0.40"},{"v":0,"d":"0.00"},"X"]
["g86116.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":8.579517458159,"d":"8.58"},{"v":4.8083791370014,"d":"4.81"},{"v":0.37842451202373,"d":"0.38"},"X",null,"X"]
["g12162.t1",{"$nulls":13},"x","x",{"v":2.66041807750055,"d":"2.66"},{"v":9.47159917557935,"d":"9.47"},{"v":9.22793947877733,"d":"9.23"},{"v":6.67561847531408,"d":"6.68"}]
["g12176.t1","0051716:0007154:0050794",null,44464,"cellular response to stimulus:cell communication:regulation of cellular process",null,"cell part","ARATHwo_AT4G34460.1","Encodes the heterotrimeric G-protein beta subunit and is involved in organ shape. A significant fraction of the protein is found in the ER. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. The predicted protein has two DWD motifs. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. It seems to be involved in the calcium-mediated response to extracellular ATP.","sp|Q40507|GBB3_TOBAC","Guanine nucleotide-binding protein subunit beta","gi|563407387|gb|AHB52758.1|",null,null,"x","x",{"v":8.98404223171467,"d":"8.98"},{"v":26.318941894062,"d":"26.32"},{"v":9.60311038319204,"d":"9.60"},{"v":35.5026758871467,"d":"35.50"}]
["g63034.t1"]
["g12201.t1","0006007:0006839:0009750:0009749:0009744:0009853:0015992:0006950",17077,"0016021:0005743:0009506:0005774:0009507","glucose catabolic process:mitochondrial transport:response to fructose stimulus:response to glucose stimulus:response to sucrose stimulus:photorespiration:proton transport:response to stress","oxidative phosphorylation uncoupler activity","integral to membrane:mitochondrial inner membrane:plasmodesma:vacuolar membrane:chloroplast","ARATHwo_AT3G54110.1","Member of Uncoupling protein PUMP2 family. Encodes a mitochondrial uncoupling protein AtUCP1 involved in maintain the redox poise of the mitochondrial electron transport chain to facilitate photosynthetic metabolism. Disruption of UCP1 results in a photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate.","sp|O81845|PUMP1_ARATH","Mitochondrial uncoupling protein 1","gi|168019574|ref|XP_001762319.1|",null,null,"x","x",{"v":4.05999300359893,"d":"4.06"},{"v":3.05946329530177,"d":"3.06"},{"v":1.23155610376517,"d":"1.23"},{"v":3.22922747572318,"d":"3.23"}]
["g12218.t1",{"$nulls":15},{"v":0.127304996101681,"d":"0.13"},{"v":0.144499021435473,"d":"0.14"},{"v":1.0218475827582,"d":"1.02"},{"v":0.121414799855835,"d":"0.12"}]
["g12237.t1"]
["g12244.t1",{"$nulls":6},"ARATHwo_AT2G16595.1","Translocon-associated protein (TRAP), alpha subunit; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP), alpha subunit (TAIR:AT2G21160.1); Has 245 Blast hits to 245 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 29; Plants - 60; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).","sp|Q5R4X4|SSRA_PONAB","Translocon-associated protein subunit alpha","gi|729315254|ref|XP_010531501.1|",null,"x","x","x",{"v":72.4517479312944,"d":"72.45"},{"v":42.8541278103794,"d":"42.85"},{"v":13.6432351089367,"d":"13.64"},{"v":14.4512625715554,"d":"14.45"}]
["g12258.t1",398,"0003723:0008270:0000166",null,"mRNA splicing, via spliceosome","RNA binding:zinc ion binding:nucleotide binding",null,"ARATHwo_AT5G51300.1","splicing factor-related; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G09660.1); Has 986600 Blast hits to 958298 proteins in 35154 species: Archae - 20434; Bacteria - 569558; Metazoa - 210103; Fungi - 32531; Plants - 60683; Viruses - 65853; Other Eukaryotes - 27438 (source: NCBI BLink).","sp|P0CO44|BBP_CRYNJ","Branchpoint-bridging protein","gi|168037994|ref|XP_001771487.1|",{"$nulls":4},{"v":1.24681763345769,"d":"1.25"},{"v":2.24909956450216,"d":"2.25"},{"v":4.56505044375581,"d":"4.57"},{"v":3.58486223596861,"d":"3.58"}]
["g12275.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.213427621088174,"d":"0.21"},{"v":0.335457415512232,"d":"0.34"},{"v":0,"d":"0.00"}]
["g63205.t1",{"$nulls":8},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0.0228434613894956,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.060592229416844,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g12302.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.331435566762927,"d":"0.33"},{"v":0.0702687566858717,"d":"0.07"}]
["g12314.t1"]
["g12331.t1",{"$nulls":11},"x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0.0405801152721013,"d":"0.04"},{"v":0.075696939805713,"d":"0.08"},{"v":0,"d":"0.00"}]
["g86316.t1",{"$nulls":10},"gi|860404048|ref|WP_048413701.1|",{"$nulls":4},{"v":0.199197872315721,"d":"0.20"},{"v":0.260012562195093,"d":"0.26"},{"v":0.518362104800086,"d":"0.52"},{"v":1.43497063853297,"d":"1.43"},"X",null,null,"g86316"]
["g12354.t1",{"$nulls":6},"ARATHwo_AT5G27830.4","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143).",null,null,"gi|802756146|ref|XP_012088983.1|",null,null,"x","x",{"v":2.07041144035838,"d":"2.07"},{"v":1.95610094229205,"d":"1.96"},{"v":1.30074620297923,"d":"1.30"},{"v":1.17943297249582,"d":"1.18"}]
["g12371.t1","0016070:0042254","0003676:0046872:0016746:0000166:0004386",5634,"RNA metabolic process:ribosome biogenesis","nucleic acid binding:metal ion binding:transferase activity, transferring acyl groups:nucleotide binding:helicase activity","nucleus","ARATHwo_AT1G31970.1","STRESS RESPONSE SUPPRESSOR 1 (STRS1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G63120.2); Has 53114 Blast hits to 49629 proteins in 3238 species: Archae - 911; Bacteria - 25415; Metazoa - 8113; Fungi - 5284; Plants - 3075; Viruses - 103; Other Eukaryotes - 10213 (source: NCBI BLink).","sp|Q6YS30|RH5_ORYSJ","DEAD-box ATP-dependent RNA helicase 5","gi|168009407|ref|XP_001757397.1|",null,null,"x","x",{"v":9.52357906639165,"d":"9.52"},{"v":11.0020416516639,"d":"11.00"},{"v":3.97418573528375,"d":"3.97"},{"v":14.6172850422125,"d":"14.62"}]
["g12386.t1",44237,"0016740:0000166",null,"cellular metabolic process","transferase activity:nucleotide binding",null,"ARATHwo_AT5G20040.3","Encodes tRNA isopentenyltransferase AtIPT9.","sp|Q9C5J6|IPT9_ARATH","tRNA dimethylallyltransferase 9","gi|302806940|ref|XP_002985201.1|",null,null,"x","x",{"v":1.11179276941373,"d":"1.11"},{"v":1.27028938568096,"d":"1.27"},{"v":1.07586159717221,"d":"1.08"},{"v":1.40154663950648,"d":"1.40"}]
["g12406.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.205989704950082,"d":"0.21"},{"v":0,"d":"0.00"},{"v":0.570061523587102,"d":"0.57"}]
["g12574.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.954686309615509,"d":"0.95"},{"v":0.104079820485605,"d":"0.10"},{"v":0.186417736538459,"d":"0.19"},"X"]
["g12592.t1",{"$nulls":19},"X",null,"X"]
["g12609.t1",{"$nulls":19},"X",null,"X"]
["g86430.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":1.41528366809248,"d":"1.42"},{"v":4.85684913195476,"d":"4.86"},{"v":1.4374647186388,"d":"1.44"},"X",null,"X"]
["g15962.t1",6816,"0043167:0000166:0016787",16020,"calcium ion transport","ion binding:nucleotide binding:hydrolase activity","membrane","ARATHwo_AT3G57330.1","Lesion mimic phenotype when mutation in the gene is combined with a mutation in ACA4. Lesion mimic phenotype of double knockout can be suppressed by nutritional supplements that increase anion levels (e.g. 15 mM Nitrate, Chloride, or Phosphate)","sp|Q9M2L4|ACA11_ARATH","Putative calcium-transporting ATPase 11, plasma membrane-type","gi|357133159|ref|XP_003568195.1|",null,null,"x","x",{"v":2.77459402498146,"d":"2.77"},{"v":7.83501485126929,"d":"7.84"},{"v":4.63791217521054,"d":"4.64"},{"v":1.12399137788455,"d":"1.12"}]
["g15977.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|594712692|gb|EXU95646.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0890893339067413,"d":"0.09"},{"v":0.24987148570764,"d":"0.25"},{"v":0,"d":"0.00"},"X"]
["g15995.t1"]
["g16011.t1"]
["g16029.t1",{"$nulls":15},{"v":0.0646006732472074,"d":"0.06"},{"v":0.674374513932862,"d":"0.67"},{"v":1.49480925907392,"d":"1.49"},{"v":1.56783187811914,"d":"1.57"},null,"X","X"]
["g16030.t1",{"$nulls":13},"x","x",{"v":11.9507540127485,"d":"11.95"},{"v":8.63208278160804,"d":"8.63"},{"v":4.56748936625709,"d":"4.57"},{"v":12.7396220846531,"d":"12.74"}]
["g16047.t1",{"$nulls":6},"ARATHwo_AT2G07340.1","PREFOLDIN 1 (PFD1); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 311 Blast hits to 311 proteins in 149 species: Archae - 25; Bacteria - 0; Metazoa - 139; Fungi - 66; Plants - 52; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).",null,null,"gi|116783822|gb|ABK23096.1|",null,"x","x","x",{"v":43.4805326961935,"d":"43.48"},{"v":5.32467404752095,"d":"5.32"},{"v":9.30804887473693,"d":"9.31"},{"v":10.6444988185306,"d":"10.64"}]
["g16065.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0296317102475443,"d":"0.03"},{"v":0.0894804594746987,"d":"0.09"},{"v":0,"d":"0.00"}]
["g12629.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":3},"sp|Q9UR07|TF211_SCHPO","Transposon Tf2-11 polyprotein","gi|595851814|ref|XP_007210190.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.26483643255563,"d":"0.26"},{"v":0.659189833722181,"d":"0.66"},{"v":0.136362287587214,"d":"0.14"},"X"]
["g12649.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|317141088|ref|XP_003189333.1|",{"$nulls":4},{"v":0.0158192374151546,"d":"0.02"},{"v":0.133861637177917,"d":"0.13"},{"v":0.385476715845772,"d":"0.39"},{"v":0,"d":"0.00"},null,"X"]
["g12664.t1",null,5488,16020,null,"binding","membrane",null,null,"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0330571068236029,"d":"0.03"},{"v":0.242851625666671,"d":"0.24"},{"v":0,"d":"0.00"},"X"]
["g12678.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|661175528|emb|CDH61236.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.048662071347117,"d":"0.05"},{"v":0.202145292557088,"d":"0.20"},{"v":0.0812250967915353,"d":"0.08"},"X"]
["g12692.t1",{"$nulls":6},"ARATHwo_AT1G43260.1","hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|658032340|ref|XP_008351676.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0461617155049727,"d":"0.05"},{"v":0.067541196083357,"d":"0.07"},"X"]
["g12708.t1",44765,null,null,"single-organism transport",null,null,"ARATHwo_AT1G55620.2","Encodes a chloride channel protein that has been localized to the chloroplast and golgi apparatus. Complements yeast gef1 mutant and therefor may function to acidify the golgi lumen.","sp|Q8RXR2|CLCF_ARATH","Chloride channel protein CLC-f","gi|700191429|gb|KGN46633.1|",null,null,"x","x",{"v":0.73350861222445,"d":"0.73"},{"v":0.243267142235607,"d":"0.24"},{"v":1.10300928073637,"d":"1.10"},{"v":0,"d":"0.00"}]
["g12725.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0652546994701477,"d":"0.07"},{"v":0.0723850843295627,"d":"0.07"},{"v":0,"d":"0.00"},"X",null,"X"]
["g12751.t1",{"$nulls":6},"ARATHwo_AT4G24900.1","unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","sp|F4JRR5|TTL_ARATH","TITAN-like protein","gi|195995567|ref|XP_002107652.1|",{"$nulls":4},{"v":2.02121224546505,"d":"2.02"},{"v":1.64226343473959,"d":"1.64"},{"v":2.76566666809305,"d":"2.77"},{"v":1.86316076675888,"d":"1.86"}]
["g12756.t1","0044260:0090304","0097159:0004386:1901363",null,"cellular macromolecule metabolic process:nucleic acid metabolic process","organic cyclic compound binding:helicase activity:heterocyclic compound binding",null,"ARATHwo_AT4G35740.1","Encodes RECQ3, an ATP-dependent helicase.","sp|Q9FT72|RQL3_ARATH","ATP-dependent DNA helicase Q-like 3","gi|593330447|ref|XP_007138650.1|",null,null,"x","x",{"v":1.93328165890614,"d":"1.93"},{"v":2.55598195323721,"d":"2.56"},{"v":1.87979706009696,"d":"1.88"},{"v":11.5471213797936,"d":"11.55"}]
["g12772.t1",{"$nulls":13},"x","x",{"v":0.813367477785296,"d":"0.81"},{"v":0.880191643943358,"d":"0.88"},{"v":1.06357145972316,"d":"1.06"},{"v":3.17763005255852,"d":"3.18"}]
["g63599.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0296518642368568,"d":"0.03"},{"v":0.232991440124052,"d":"0.23"},{"v":0.0583631727669193,"d":"0.06"},null,"X"]
["g12800.t1",{"$nulls":10},"gi|115467272|ref|NP_001057235.1|",null,null,"x","x",{"v":8.20816772439875,"d":"8.21"},{"v":4.77046388069576,"d":"4.77"},{"v":3.07167880128857,"d":"3.07"},{"v":0,"d":"0.00"}]
["g12815.t1",{"$nulls":10},"gi|116780681|gb|ABK21769.1|",null,null,"x","x",{"v":0.113518959218662,"d":"0.11"},{"v":0.436303234828056,"d":"0.44"},{"v":0,"d":"0.00"},{"v":52.4934412956972,"d":"52.49"}]
["g12836.t1",{"$nulls":6},"ARATHwo_AT3G50370.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink)."]
["g12853.t1",{"$nulls":20},"X","X"]
["g12866.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.17243236012892,"d":"0.17"},{"v":0,"d":"0.00"}]
["g12883.t1"]
["g12897.t1"]
["g12919.t1",null,8233,null,null,"peptidase activity",null,"ARATHwo_AT2G25940.1","Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.","sp|P49043|VPE_CITSI","Vacuolar-processing enzyme","gi|168033758|ref|XP_001769381.1|",{"$nulls":4},{"v":0.212738483179543,"d":"0.21"},{"v":3.40863613778003,"d":"3.41"},{"v":0.0644306618840021,"d":"0.06"},{"v":28.8023110728302,"d":"28.80"}]
["g12929.t1",{"$nulls":10},"gi|406696795|gb|EKD00070.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.260668019912609,"d":"0.26"},{"v":0.116171394003648,"d":"0.12"},null,"X"]
["g12947.t1",{"$nulls":8},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.0618552984353082,"d":"0.06"},{"v":0.151163095990369,"d":"0.15"},{"v":1.23606299267909,"d":"1.24"},{"v":0.270632723755487,"d":"0.27"},"X"]
["g12964.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.592955559507531,"d":"0.59"},{"v":2.14376575337882,"d":"2.14"},{"v":0.380922756208733,"d":"0.38"},"X",null,"X"]
["g12976.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659121350|ref|XP_008460615.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.617264014982964,"d":"0.62"},{"v":0.244036086479448,"d":"0.24"},"X"]
["g12995.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.310854223829701,"d":"0.31"},{"v":1.7826401058384,"d":"1.78"},{"v":0.514724182409163,"d":"0.51"},"X",null,"X"]
["g13012.t1",{"$nulls":15},{"v":0.0872773980587854,"d":"0.09"},{"v":0.463800591750938,"d":"0.46"},{"v":3.02168686190627,"d":"3.02"},{"v":0.936485254743623,"d":"0.94"},null,"X","X"]
["g13030.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|861618021|gb|KMQ86727.1|",{"$nulls":4},{"v":0.0666775489310172,"d":"0.07"},{"v":0.15885621340044,"d":"0.16"},{"v":1.04348448364781,"d":"1.04"},{"v":0.202372943274436,"d":"0.20"},"X"]
["g13040.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P31623|POL_JSRV","Pol polyprotein","gi|661185511|emb|CDH52155.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.080737565194089,"d":"0.08"},{"v":0.193176682719153,"d":"0.19"},{"v":0,"d":"0.00"},"X"]
["g13060.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",null,"ARATHwo_AT5G42560.1","Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|671688033|emb|CDS12578.1|",{"$nulls":4},{"v":2.35063383529169,"d":"2.35"},{"v":3.58549799522541,"d":"3.59"},{"v":3.1819810336948,"d":"3.18"},{"v":6.9744236736725,"d":"6.97"},null,"X"]
["g13074.t1",{"$nulls":15},{"v":0.0480359671026655,"d":"0.05"},{"v":0.182110250631029,"d":"0.18"},{"v":0.226292441211536,"d":"0.23"},{"v":0.217543139587071,"d":"0.22"},"X",null,"X"]
["g16078.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.250886678527942,"d":"0.25"},{"v":0,"d":"0.00"},"X",null,"X"]
["g16094.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|661175376|emb|CDH61339.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0202410339341636,"d":"0.02"},{"v":0.284399078774119,"d":"0.28"},{"v":0,"d":"0.00"},"X"]
["g16112.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|670412090|ref|XP_008647189.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.145145625108896,"d":"0.15"},{"v":0.18141239075034,"d":"0.18"},{"v":0.189039320232299,"d":"0.19"}]
["g64076.t1",{"$nulls":6},"ARATHwo_AT4G20520.1","RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|141475|sp|P14381.1|YTX2_XENLA",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.726340158463001,"d":"0.73"},{"v":0.0710600098228937,"d":"0.07"}]
["g24239.t1",null,5488,null,null,"binding",null,"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|147768973|emb|CAN62465.1|",{"$nulls":4},{"v":0.0178164070752295,"d":"0.02"},{"v":0.082036797079807,"d":"0.08"},{"v":0.318524111325834,"d":"0.32"},{"v":0,"d":"0.00"},null,"X"]
["g24262.t1",{"$nulls":15},{"v":0.0871469471222736,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0.290708036888949,"d":"0.29"},{"v":0.540285723703839,"d":"0.54"},"X",null,"X"]
["g24279.t1",{"$nulls":15},{"v":2.1286609665893,"d":"2.13"},{"v":97.7022245719356,"d":"97.70"},{"v":38.1908777739215,"d":"38.19"},{"v":134.232563688588,"d":"134.23"},"X",null,"X"]
["g24296.t1",{"$nulls":10},"gi|662133438|ref|WP_030085034.1|",null,"x","x","x",{"v":3.82944483343637,"d":"3.83"},{"v":3.19043007854649,"d":"3.19"},{"v":2.12665204475354,"d":"2.13"},{"v":0,"d":"0.00"}]
["g24312.t1",{"$nulls":15},{"v":0.120553632486563,"d":"0.12"},{"v":0.067927227247916,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0.11400946629211,"d":"0.11"}]
["g24326.t1",{"$nulls":6},"ARATHwo_AT1G01540.2","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G01330.1); Has 118949 Blast hits to 117566 proteins in 4483 species: Archae - 118; Bacteria - 14365; Metazoa - 43793; Fungi - 9783; Plants - 32976; Viruses - 455; Other Eukaryotes - 17459 (source: NCBI BLink).","sp|Q3EDL4|Y1154_ARATH","Probable serine/threonine-protein kinase At1g01540","gi|590620342|ref|XP_007024509.1|",null,null,"x","x",{"v":18.5603612607604,"d":"18.56"},{"v":8.49774279069989,"d":"8.50"},{"v":5.02550260345621,"d":"5.03"},{"v":2.57483664769945,"d":"2.57"}]
["g24346.t1",{"$nulls":10},"gi|769794566|ref|XP_011628706.1|"]
["g24363.t1",null,8233,null,null,"peptidase activity",null,"ARATHwo_AT1G79340.1","Encodes MCP2d, the predominant and constitutively expressed member of type II metacaspases (MCPs). MCP2d plays a positive regulatory role in biotic and abiotic stress-induced programmed cell death (PCD). Arabidopsis contains three type I MCP genes (MCP1a-c) and six type II MCP genes (MCP2a?f): AtMCP1a/At5g64240, AtMCP1b/At1g02170, AtMCP1c/At4g25110, AtMCP2a/At1g79310, AtMCP2b/At1g79330, AtMCP2c/At1g79320, AtMCP2d/At1g79340, AtMCP2e/At1g16420, AtMCP2f/At5g04200.","sp|O64517|MCA4_ARATH","Metacaspase-4","gi|167537374|ref|XP_001750356.1|",null,null,"x","x",{"v":7.6299502835525,"d":"7.63"},{"v":15.8670746720104,"d":"15.87"},{"v":9.31517848631861,"d":"9.32"},{"v":1.33063907814887,"d":"1.33"}]
["g24364.t1",{"$nulls":13},"x","x",{"v":2.11203482697179,"d":"2.11"},{"v":4.61923969357775,"d":"4.62"},{"v":11.0520140479065,"d":"11.05"},{"v":7.67035131371754,"d":"7.67"}]
["g24380.t1",{"$nulls":13},"x","x",{"v":0.620704980863144,"d":"0.62"},{"v":0.367275042467223,"d":"0.37"},{"v":36.3446409107557,"d":"36.34"},{"v":4.56155325152076,"d":"4.56"}]
["g24408.t1","0006508:0006796",8233,502,"proteolysis:phosphate-containing compound metabolic process","peptidase activity","proteasome complex",null,null,"sp|B3CLU4|HSLV_WOLPP","ATP-dependent protease subunit HslV","gi|302812404|ref|XP_002987889.1|",null,null,"x","x",{"v":9.8237815054662,"d":"9.82"},{"v":6.25388726562659,"d":"6.25"},{"v":4.88096860795374,"d":"4.88"},{"v":6.0342240099194,"d":"6.03"}]
["g24413.t1",{"$nulls":13},"x","x",{"v":3.16166629766813,"d":"3.16"},{"v":13.4072027101939,"d":"13.41"},{"v":0.683736165357785,"d":"0.68"},{"v":5.15141659007887,"d":"5.15"}]
["g24429.t1",{"$nulls":6},"ARATHwo_AT5G20030.1","Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like RNA-binding protein (TAIR:AT4G32440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|F4K2F0|EML3_ARATH","Protein EMSY-LIKE 3",{"$nulls":3},"x","x",{"v":7.06182548988612,"d":"7.06"},{"v":7.77012398553887,"d":"7.77"},{"v":4.31684820296732,"d":"4.32"},{"v":15.3692673873188,"d":"15.37"}]
["g24447.t1",{"$nulls":8},"sp|Q4G0P3|HYDIN_HUMAN","Hydrocephalus-inducing protein homolog",{"$nulls":5},{"v":0.0513380201277732,"d":"0.05"},{"v":0.126210791864103,"d":"0.13"},{"v":0.119932587682005,"d":"0.12"},{"v":0,"d":"0.00"}]
["g16142.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.427052898318643,"d":"0.43"},{"v":0.523730857701531,"d":"0.52"},{"v":0.489325308105783,"d":"0.49"},"X",null,"X"]
["g16158.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|923749700|ref|XP_013673944.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0460922327687283,"d":"0.05"},{"v":0.20702176312007,"d":"0.21"},{"v":0.11323976255565,"d":"0.11"},"X"]
["g87056.t1",{"$nulls":8},"sp|P40087|DDI1_YEAST","DNA damage-inducible protein 1",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.136361716291516,"d":"0.14"},{"v":0.469760795384335,"d":"0.47"},{"v":0.136397847375334,"d":"0.14"},"X"]
["g16806.t1",{"$nulls":8},"sp|Q6ZRH7|CTSRG_HUMAN","Cation channel sperm-associated protein subunit gamma","gi|817264116|ref|XP_012294125.1|",null,null,"x","x",{"v":0.365833443953527,"d":"0.37"},{"v":0.518381298943619,"d":"0.52"},{"v":11.4037913710493,"d":"11.40"},{"v":0.454283855757696,"d":"0.45"}]
["g16823.t1",{"$nulls":6},"ARATHwo_AT1G17100.1","SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G78450.1); Has 1318 Blast hits to 1294 proteins in 131 species: Archae - 15; Bacteria - 114; Metazoa - 250; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).","sp|Q9WU63|HEBP2_MOUSE","Heme-binding protein 2","gi|168068011|ref|XP_001785891.1|",null,null,"x","x",{"v":8.636754363248,"d":"8.64"},{"v":6.82115987415167,"d":"6.82"},{"v":8.72039986703948,"d":"8.72"},{"v":0.0536062328570157,"d":"0.05"}]
["g16841.t1",{"$nulls":6},"ARATHwo_AT1G08280.1","Glycosyltransferase family 29 (sialyltransferase) family protein; FUNCTIONS IN: sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, integral to Golgi membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Sialyltransferase (InterPro:IPR012163), Glycosyl transferase, family 29 (InterPro:IPR001675); Has 2035 Blast hits to 2021 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 1803; Fungi - 0; Plants - 152; Viruses - 18; Other Eukaryotes - 62 (source: NCBI BLink).","sp|A2ZI41|STLP2_ORYSI","Sialyltransferase-like protein 2","gi|629122902|gb|KCW87392.1|",null,null,"x","x",{"v":0.232567697829354,"d":"0.23"},{"v":0.441713258165309,"d":"0.44"},{"v":11.1332713713575,"d":"11.13"},{"v":0.425692877317499,"d":"0.43"}]
["g16857.t1",{"$nulls":8},"sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.235804987659787,"d":"0.24"},{"v":0,"d":"0.00"}]
["g16874.t1",44237,16301,9536,"cellular metabolic process","kinase activity","plastid","ARATHwo_AT5G01920.1","Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2.","sp|Q9LZV4|STN8_ARATH","Serine/threonine-protein kinase STN8, chloroplastic","gi|148906329|gb|ABR16320.1|",null,null,"x","x",{"v":8.06775316784308,"d":"8.07"},{"v":11.7690699790605,"d":"11.77"},{"v":5.91217369892945,"d":"5.91"},{"v":1.46896416301019,"d":"1.47"}]
["g16891.t1","0006351:0006259","0000166:0003916","0009536:0005634","transcription, DNA-dependent:DNA metabolic process","nucleotide binding:DNA topoisomerase activity","plastid:nucleus","ARATHwo_AT3G10690.1","DNA GYRASE A (GYRA); FUNCTIONS IN: DNA topoisomerase activity, catalytic activity, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA gyrase, subunit A (InterPro:IPR005743), DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), DNA topoisomerase, type IIA, central (InterPro:IPR013760), DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel (InterPro:IPR006691); BEST Arabidopsis thaliana protein match is: topoisomerase II (TAIR:AT3G23890.1); Has 22353 Blast hits to 21396 proteins in 3265 species: Archae - 84; Bacteria - 12907; Metazoa - 182; Fungi - 204; Plants - 111; Viruses - 99; Other Eukaryotes - 8766 (source: NCBI BLink).","sp|Q5YLB5|GYRA_NICBE","DNA gyrase subunit A, chloroplastic/mitochondrial","gi|168035418|ref|XP_001770207.1|",null,null,"x","x",{"v":1.37893626180272,"d":"1.38"},{"v":1.21828076080753,"d":"1.22"},{"v":0.844984914534373,"d":"0.84"},{"v":1.3861458143791,"d":"1.39"}]
["g16908.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.430405959750756,"d":"0.43"},{"v":0.0861064571936893,"d":"0.09"},"X",null,"X"]
["g16924.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0927249757870397,"d":"0.09"},{"v":0.330084744008475,"d":"0.33"},{"v":0.076715042530674,"d":"0.08"},null,"X","X"]
["g16941.t1"]
["g16952.t1"]
["g16972.t1",null,null,"0044434:0016020",null,null,"chloroplast part:membrane","ARATHwo_AT1G65260.1","Encodes a protein required for thylakoid membrane formation.","sp|Q03943|IM30_PEA","Membrane-associated 30 kDa protein, chloroplastic","gi|212274505|ref|NP_001130281.1|",null,null,"x","x",{"v":8.60461098162884,"d":"8.60"},{"v":3.58679034768437,"d":"3.59"},{"v":1.62968831867927,"d":"1.63"},{"v":3.5997638808364,"d":"3.60"}]
["g16989.t1",null,16740,"0016020:0005739",null,"transferase activity","membrane:mitochondrion","ARATHwo_AT1G57600.1","MBOAT (membrane bound O-acyl transferase) family protein; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); Has 2343 Blast hits to 2336 proteins in 775 species: Archae - 0; Bacteria - 1642; Metazoa - 209; Fungi - 146; Plants - 49; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).","sp|Q09758|YA71_SCHPO","Putative membrane-bound O-acyltransferase C24H6.01c","gi|778712930|ref|XP_011656961.1|",{"$nulls":4},{"v":0.588606308595412,"d":"0.59"},{"v":0.78878627934598,"d":"0.79"},{"v":0.452994468929936,"d":"0.45"},{"v":0.296147740200318,"d":"0.30"}]
["g17007.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.251289386788189,"d":"0.25"},{"v":0.861610697772953,"d":"0.86"},{"v":0,"d":"0.00"},"X"]
["g17023.t1",{"$nulls":19},"X",null,"X"]
["g17030.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.684707889779271,"d":"0.68"},{"v":0,"d":"0.00"}]
["g17054.t1",2000155,null,1534,"positive regulation of ciliary cell motility",null,"radial spoke",null,null,"sp|P12759|RSP3_CHLRE","Flagellar radial spoke protein 3","gi|159474586|ref|XP_001695406.1|",null,null,"x","x",{"v":0.574966186838261,"d":"0.57"},{"v":0.277546743709982,"d":"0.28"},{"v":55.1218808036439,"d":"55.12"},{"v":0.944209834267861,"d":"0.94"}]
["g17070.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|390366728|ref|XP_003731101.1|",{"$nulls":8},"X"]
["g87333.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.42073073414271,"d":"0.42"},{"v":0.312445572358941,"d":"0.31"},"X",null,"X"]
["g17102.t1",{"$nulls":8},"sp|Q6VMQ6|MCAF1_HUMAN","Activating transcription factor 7-interacting protein 1",{"$nulls":5},{"v":0.37583245053648,"d":"0.38"},{"v":0.166395165665098,"d":"0.17"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g17114.t1",{"$nulls":8},"sp|P10272|POL_BAEVM","Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0889120151144287,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g17137.t1",{"$nulls":8},"sp|P31792|POL_FENV1","Pol polyprotein","gi|727130486|emb|CEG85095.1|",{"$nulls":8},"X"]
["g17148.t1",{"$nulls":12},"x","x","x",{"v":29.3389937086837,"d":"29.34"},{"v":3.40875247558784,"d":"3.41"},{"v":1.79148306851011,"d":"1.79"},{"v":0.142479576197561,"d":"0.14"}]
["g17165.t1",{"$nulls":10},"gi|749712295|gb|KII62012.1|",{"$nulls":8},"X"]
["g87440.t1",{"$nulls":6},"ARATHwo_AT5G64290.1","dicarboxylate transport 2.1 (DIT2.1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: malate transport, response to nematode; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: dicarboxylate transporter 2.2 (TAIR:AT5G64280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q8L7Z9|DIT2_SPIOL","Dicarboxylate transporter 2, chloroplastic","gi|22121978|gb|AAM89395.1|",null,"x","x","x",{"v":55.0793406953216,"d":"55.08"},{"v":14.9921514198224,"d":"14.99"},{"v":5.47734488990277,"d":"5.48"},{"v":0,"d":"0.00"}]
["g17567.t1",6414,"0003746:0005525:0003924",null,"translational elongation","translation elongation factor activity:GTP binding:GTPase activity",null,"ARATHwo_AT1G56070.1","encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.","sp|O23755|EF2_BETVU","Elongation factor 2","gi|743796220|ref|XP_010924672.1|",null,null,"x","x",{"v":26.6814622677395,"d":"26.68"},{"v":22.4895054677584,"d":"22.49"},{"v":7.48886444867631,"d":"7.49"},{"v":38.2964302087944,"d":"38.30"}]
["g17587.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.520908186773473,"d":"0.52"},{"v":0,"d":"0.00"},"X",null,"X"]
["g17604.t1","0050794:0006811:0055085:0006952",166,16020,"regulation of cellular process:ion transport:transmembrane transport:defense response","nucleotide binding","membrane",{"$nulls":4},"gi|922455466|ref|XP_013629965.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.15857010386539,"d":"0.16"},{"v":5.41932246123784,"d":"5.42"},{"v":0.131999744502907,"d":"0.13"},null,"X"]
["g18564.t1",{"$nulls":10},"gi|406700241|gb|EKD03417.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0484716402728119,"d":"0.05"},{"v":0,"d":"0.00"},null,"X"]
["g18580.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.112852582298027,"d":"0.11"},{"v":0.090218719546507,"d":"0.09"},"X",null,"X"]
["g18599.t1",{"$nulls":8},"sp|P03360|POL_AVIRE","Pol polyprotein","gi|50300512|gb|AAT73655.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0473783343319027,"d":"0.05"},{"v":0.12217589869467,"d":"0.12"},{"v":0.17601652314015,"d":"0.18"},null,"X"]
["g18615.t1",8152,43167,null,"metabolic process","ion binding",{"$nulls":5},"gi|861617032|gb|KMQ86489.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.523622927849902,"d":"0.52"},{"v":0,"d":"0.00"},"X"]
["g18632.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0.0172791419263811,"d":"0.02"},{"v":0.199999166355641,"d":"0.20"},{"v":0.746120477041169,"d":"0.75"},{"v":0.336043813811741,"d":"0.34"},"X"]
["g18647.t1",{"$nulls":12},"x","x","x",{"v":9.38484186982494,"d":"9.38"},{"v":16.5766108412401,"d":"16.58"},{"v":7.13141272582342,"d":"7.13"},{"v":44.478487644859,"d":"44.48"}]
["g18664.t1","0043170:0044238",3824,null,"macromolecule metabolic process:primary metabolic process","catalytic activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|861618500|gb|KMQ86828.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.550538581589212,"d":"0.55"},{"v":0.901131642602105,"d":"0.90"},{"v":0.131719903910649,"d":"0.13"},"X"]
["g17617.t1",{"$nulls":10},"gi|4235644|gb|AAD13304.1|",{"$nulls":4},{"v":0.0567444097132203,"d":"0.06"},{"v":0.272227937277716,"d":"0.27"},{"v":2.01345365710067,"d":"2.01"},{"v":0.53796495461419,"d":"0.54"},"X"]
["g17624.t1"]
["g17636.t1",{"$nulls":15},{"v":0.372444533075369,"d":"0.37"},{"v":0.600040914365402,"d":"0.60"},{"v":2.46199945257444,"d":"2.46"},{"v":1.56140706609392,"d":"1.56"},"X",null,"X"]
["g17644.t1",{"$nulls":13},"x","x",{"v":2.76833079385624,"d":"2.77"},{"v":38.8704250701381,"d":"38.87"},{"v":17.797288393212,"d":"17.80"},{"v":9.60041603153692,"d":"9.60"}]
["g17662.t1"]
["g64710.t1",{"$nulls":8},"sp|Q12019|MDN1_YEAST","Midasin",{"$nulls":5},{"v":0.0246112496490291,"d":"0.02"},{"v":0.0238620063699416,"d":"0.02"},{"v":0.085251958641866,"d":"0.09"},{"v":0,"d":"0.00"}]
["g17696.t1",{"$nulls":6},"ARATHwo_AT2G44310.1","Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G54530.1); Has 278 Blast hits to 269 proteins in 34 species: Archae - 0; Bacteria - 3; Metazoa - 2; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).",null,null,"gi|115479825|ref|NP_001063506.1|",null,null,"x","x",{"v":1.62630993988496,"d":"1.63"},{"v":19.6391292273602,"d":"19.64"},{"v":25.0946258273278,"d":"25.09"},{"v":60.2339315500031,"d":"60.23"}]
["g17704.t1"]
["g17718.t1",{"$nulls":12},"x","x","x",{"v":46.9133559806815,"d":"46.91"},{"v":181.500383963667,"d":"181.50"},{"v":53.8685999946458,"d":"53.87"},{"v":0,"d":"0.00"}]
["g17736.t1",{"$nulls":10},"gi|750956900|gb|KIK13977.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.1161136463247,"d":"0.12"},{"v":0,"d":"0.00"},"X"]
["g17752.t1",null,5488,null,null,"binding",null,"ARATHwo_AT4G20520.1","RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|34392578|dbj|BAC82621.1|"]
["g17778.t1","0030244:0043547:0048193","0008270:0003677:0005096","0005829:0005634","cellulose biosynthetic process:positive regulation of GTPase activity:Golgi vesicle transport","zinc ion binding:DNA binding:GTPase activator activity","cytosol:nucleus","ARATHwo_AT2G37550.1","A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.","sp|O80925|AGD7_ARATH","ADP-ribosylation factor GTPase-activating protein AGD7","gi|168039946|ref|XP_001772457.1|",null,null,"x","x",{"v":34.0613894752826,"d":"34.06"},{"v":26.8224589305157,"d":"26.82"},{"v":21.5371966413025,"d":"21.54"},{"v":16.4106603119311,"d":"16.41"}]
["g17784.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.16044787905778,"d":"0.16"},{"v":0,"d":"0.00"},null,"X"]
["g17801.t1"]
["g17818.t1",{"$nulls":10},"gi|768941267|ref|XP_011610502.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0876501347237377,"d":"0.09"},{"v":0.746680610547979,"d":"0.75"},{"v":0,"d":"0.00"},"X"]
["g17832.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|688549482|ref|XP_009298858.1|",{"$nulls":8},"X"]
["g17846.t1",{"$nulls":15},{"v":0.0878791679034701,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},null,"X","X"]
["g17867.t1",{"$nulls":6},"ARATHwo_AT3G56820.1","unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).",null,null,"gi|590633711|ref|XP_007028181.1|",null,null,"x","x",{"v":2.11609117311345,"d":"2.12"},{"v":2.13481912618469,"d":"2.13"},{"v":2.68861843246031,"d":"2.69"},{"v":3.84008568046015,"d":"3.84"}]
["g17879.t1",{"$nulls":13},"x","x",{"v":47.7077262799139,"d":"47.71"},{"v":43.898394619165,"d":"43.90"},{"v":41.8843462721795,"d":"41.88"},{"v":25.6830963453294,"d":"25.68"}]
["g17895.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.151653389996406,"d":"0.15"},{"v":0,"d":"0.00"}]
["g17912.t1",{"$nulls":10},"gi|342321121|gb|EGU13057.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0778166117075717,"d":"0.08"},{"v":0.310902764079723,"d":"0.31"},{"v":0,"d":"0.00"},"X"]
["g17927.t1",{"$nulls":15},{"v":0.369880421728995,"d":"0.37"},{"v":1.79427819777674,"d":"1.79"},{"v":3.30639714218046,"d":"3.31"},{"v":4.21538856842813,"d":"4.22"}]
["g17942.t1","0016192:0006623:0007264:0007030:0007033",5525,"0005622:0005886","vesicle-mediated transport:protein targeting to vacuole:small GTPase mediated signal transduction:Golgi organization:vacuole organization","GTP binding","intracellular:plasma membrane","ARATHwo_AT3G22950.1","A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins.","sp|Q55AD9|ARL5_DICDI","ADP-ribosylation factor-like protein 5","gi|168000230|ref|XP_001752819.1|",null,null,"x","x",{"v":13.8433133923015,"d":"13.84"},{"v":16.3642047928668,"d":"16.36"},{"v":7.11926963924062,"d":"7.12"},{"v":7.53360488108779,"d":"7.53"}]
["g17959.t1"]
["g18672.t1",{"$nulls":6},"ARATHwo_AT1G26180.1","unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).",null,null,"gi|302800209|ref|XP_002981862.1|",null,"x","x","x",{"v":18.0677669284576,"d":"18.07"},{"v":13.2260489663135,"d":"13.23"},{"v":20.3858385632434,"d":"20.39"},{"v":11.1955871954541,"d":"11.20"}]
["g18690.t1",{"$nulls":8},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|384486915|gb|EIE79095.1|",{"$nulls":4},{"v":0.0191455645891014,"d":"0.02"},{"v":0.0626707557393821,"d":"0.06"},{"v":0.334872910151805,"d":"0.33"},{"v":0,"d":"0.00"},"X"]
["g18707.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|514689791|ref|XP_004992470.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0526462873477819,"d":"0.05"},{"v":0,"d":"0.00"},"X"]
["g87975.t1",{"$nulls":19},"X",null,"X"]
["g19163.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink)."]
["g19180.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|729303393|ref|XP_010527565.1|",null,null,"x","x",{"v":0.0163604707300372,"d":"0.02"},{"v":0.0220840746371748,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g19198.t1",{"$nulls":8},"sp|O07921|CHIS_BACSU","Chitosanase","gi|916953556|ref|WP_051560268.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.101105416184711,"d":"0.10"},{"v":0.69840582677547,"d":"0.70"},{"v":0,"d":"0.00"}]
["g19215.t1",{"$nulls":15},{"v":1.0496078445512,"d":"1.05"},{"v":0.586390083421394,"d":"0.59"},{"v":0.230339789646778,"d":"0.23"},{"v":1.13352986466425,"d":"1.13"}]
["g19223.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.119211749701451,"d":"0.12"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g19249.t1",{"$nulls":6},"ARATHwo_AT1G10510.1","embryo defective 2004 (emb2004); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 1 (TAIR:AT3G63130.2); Has 21704 Blast hits to 6781 proteins in 315 species: Archae - 0; Bacteria - 982; Metazoa - 9646; Fungi - 490; Plants - 1111; Viruses - 0; Other Eukaryotes - 9475 (source: NCBI BLink).","sp|A2RRS8|CEP78_XENTR","Centrosomal protein of 78 kDa","gi|551601767|ref|XP_005782500.1|",{"$nulls":4},{"v":0.0568040356539798,"d":"0.06"},{"v":0.0713406579944312,"d":"0.07"},{"v":14.4547452539875,"d":"14.45"},{"v":2.22272143768527,"d":"2.22"}]
["g18733.t1",{"$nulls":15},{"v":0.0165974185495652,"d":"0.02"},{"v":2.76795192387311,"d":"2.77"},{"v":0.417492100538246,"d":"0.42"},{"v":0.230215160693038,"d":"0.23"}]
["g18750.t1","0006096:0006006:0055114","0051287:0050661:0004365",5737,"glycolysis:glucose metabolic process:oxidation-reduction process","NAD binding:NADP binding:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity","cytoplasm","ARATHwo_AT1G12900.1","glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glycolysis, glucose metabolic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24704 Blast hits to 24695 proteins in 6149 species: Archae - 47; Bacteria - 10700; Metazoa - 2230; Fungi - 2778; Plants - 3753; Viruses - 0; Other Eukaryotes - 5196 (source: NCBI BLink).","sp|Q43247|G3PC3_MAIZE","Glyceraldehyde-3-phosphate dehydrogenase 3, cytosolic","gi|18073145|emb|CAC80380.1|",null,"x",null,"x"]
["g18767.t1","0090199:0016925:0001932:0009853:0051510:0009733:0010155:0009585:0043161:0019344:2001234:0006952:0000413:0016567:0009704:0043462:0080129:0006979:0042023:0009892:0051788:0044092:0033554:0046902:0009785:0046686:0022898:0009742:0006457:0009735:0042752:0097300","0005515:0003755","0005829:0005886:0031463:0048046:0005634:0019005","regulation of release of cytochrome c from mitochondria:protein sumoylation:regulation of protein phosphorylation:photorespiration:regulation of unidimensional cell growth:response to auxin stimulus:regulation of proton transport:red, far-red light phototransduction:proteasomal ubiquitin-dependent protein catabolic process:cysteine biosynthetic process:negative regulation of apoptotic signaling pathway:defense response:protein peptidyl-prolyl isomerization:protein ubiquitination:de-etiolation:regulation of ATPase activity:proteasome core complex assembly:response to oxidative stress:DNA endoreduplication:negative regulation of metabolic process:response to misfolded protein:negative regulation of molecular function:cellular response to stress:regulation of mitochondrial membrane permeability:blue light signaling pathway:response to cadmium ion:regulation of transmembrane transporter activity:brassinosteroid mediated signaling pathway:protein folding:response to cytokinin stimulus:regulation of circadian rhythm:programmed necrotic cell death","protein binding:peptidyl-prolyl cis-trans isomerase activity","cytosol:plasma membrane:Cul3-RING ubiquitin ligase complex:apoplast:nucleus:SCF ubiquitin ligase complex",{"$nulls":4},"gi|755876422|ref|XP_005184005.2|",null,null,"x","x",{"v":29.8387887908708,"d":"29.84"},{"v":86.3183573563839,"d":"86.32"},{"v":63.858401924483,"d":"63.86"},{"v":23.8259549676549,"d":"23.83"}]
["g88038.t1","0007165:0006935",4871,16021,"signal transduction:chemotaxis","signal transducer activity","integral to membrane","ARATHwo_AT5G08650.1","Small GTP-binding protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein LepA, C-terminal (InterPro:IPR013842), Protein synthesis factor, GTP-binding (InterPro:IPR000795), GTP-binding protein LepA (InterPro:IPR006297), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Small GTP-binding protein (TAIR:AT5G39900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|B6JJT7|LEPA_OLICO","Elongation factor 4","gi|505483497|ref|WP_015669929.1|",{"$nulls":8},"X",null,null,"g88038"]
["g18796.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|390366728|ref|XP_003731101.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0476214972421507,"d":"0.05"},{"v":0.254700845492406,"d":"0.25"},{"v":0.0394638622649177,"d":"0.04"}]
["g18813.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.260307536542204,"d":"0.26"},{"v":0,"d":"0.00"},"X",null,"X"]
["g18830.t1",{"$nulls":8},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|147845507|emb|CAN80599.1|",{"$nulls":4},{"v":0.0403106623483854,"d":"0.04"},{"v":2.01121236838041,"d":"2.01"},{"v":11.2868998964103,"d":"11.29"},{"v":4.27470842869135,"d":"4.27"},null,"X"]
["g65242.t1",{"$nulls":20},"X","X"]
["g18857.t1",{"$nulls":15},{"v":0.108392624985381,"d":"0.11"},{"v":0.416228611921144,"d":"0.42"},{"v":12.0940541284051,"d":"12.09"},{"v":0.550174214225425,"d":"0.55"},null,"X","X"]
["g18874.t1",{"$nulls":6},"ARATHwo_AT3G51850.1","member of Calcium Dependent Protein Kinase","sp|P03360|POL_AVIRE","Pol polyprotein","gi|4235644|gb|AAD13304.1|",{"$nulls":4},{"v":0.0398557591185694,"d":"0.04"},{"v":1.10131672761943,"d":"1.10"},{"v":8.24254742028981,"d":"8.24"},{"v":0.428234883016785,"d":"0.43"},null,"X"]
["g18887.t1","0009635:0009097:0009099","0030976:0016829:0000287:0050660:0003984",9570,"response to herbicide:isoleucine biosynthetic process:valine biosynthetic process","thiamine pyrophosphate binding:lyase activity:magnesium ion binding:flavin adenine dinucleotide binding:acetolactate synthase activity","chloroplast stroma","ARATHwo_AT3G48560.1","Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.","sp|P09114|ILVB2_TOBAC","Acetolactate synthase 2, chloroplastic","gi|902964912|dbj|BAS04470.1|",null,null,"x","x",{"v":23.3282995712707,"d":"23.33"},{"v":9.64445681999511,"d":"9.64"},{"v":7.23370027707605,"d":"7.23"},{"v":12.8787609184744,"d":"12.88"}]
["g18897.t1",{"$nulls":10},"gi|353233274|emb|CCD80629.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.87505486162675,"d":"0.88"},{"v":0.0656969902136187,"d":"0.07"},"X"]
["g18898.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.150666322541317,"d":"0.15"},{"v":0.270192339230235,"d":"0.27"},{"v":0,"d":"0.00"}]
["g18915.t1",{"$nulls":6},"ARATHwo_AT1G27990.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).",null,null,"gi|168034518|ref|XP_001769759.1|",null,null,"x","x",{"v":0.849302741311787,"d":"0.85"},{"v":0.205712338743907,"d":"0.21"},{"v":18.7840253355215,"d":"18.78"},{"v":2.21991994309554,"d":"2.22"}]
["g18931.t2",{"$nulls":15},{"v":0.169837852337928,"d":"0.17"},{"v":1.79877139244006,"d":"1.80"},{"v":2.15962709863241,"d":"2.16"},{"v":2.52620906702586,"d":"2.53"}]
["g18946.t1",{"$nulls":13},"x","x",{"v":1.85458733358792,"d":"1.85"},{"v":4.86428554864529,"d":"4.86"},{"v":1.39269378016145,"d":"1.39"},{"v":16.7290551042716,"d":"16.73"}]
["g18962.t1",80167,null,null,"response to karrikin",null,null,"ARATHwo_AT3G02910.1","AIG2-like (avirulence induced gene) family protein; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT5G46720.1); Has 320 Blast hits to 319 proteins in 102 species: Archae - 4; Bacteria - 64; Metazoa - 146; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).","sp|Q9M8T3|Y2910_ARATH","Putative gamma-glutamylcyclotransferase At3g02910","gi|168061696|ref|XP_001782823.1|",null,null,"x","x",{"v":189.329810445419,"d":"189.33"},{"v":21.041387965362,"d":"21.04"},{"v":35.6691827492751,"d":"35.67"},{"v":22.4969407101928,"d":"22.50"}]
["g88234.t1",{"$nulls":6},"ARATHwo_AT4G02010.1","Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G20300.1); Has 117558 Blast hits to 116281 proteins in 4412 species: Archae - 107; Bacteria - 13740; Metazoa - 43399; Fungi - 9953; Plants - 33036; Viruses - 373; Other Eukaryotes - 16950 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":1.13334817223226,"d":"1.13"},{"v":0.297116679935325,"d":"0.30"},{"v":3.6436534303578,"d":"3.64"},{"v":2.1916120040119,"d":"2.19"}]
["g18990.t1",{"$nulls":6},"ARATHwo_AT2G20560.1","DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).","sp|P59910|DJB13_HUMAN","DnaJ homolog subfamily B member 13","gi|168027545|ref|XP_001766290.1|",null,null,"x","x",{"v":36.0011307499433,"d":"36.00"},{"v":30.34391234115,"d":"30.34"},{"v":32.0862610690285,"d":"32.09"},{"v":67.0495484247363,"d":"67.05"}]
["g19012.t1","0006833:0009414:0009697:0000911:0009733:0048481:0010363:0010200:0006096:0031348:0050832:0043069:0009723:0042539:0009595:0042742:0030968:0006612:0009738:0009555:0010374:0010310:0043622:0009862:0042538:0035304:0046686:0009409:0007030:0000165:0009868:0043900:0006355:0006468:0007112","0004707:0005515:0005524","0005856:0005829:0005634:0009504","water transport:response to water deprivation:salicylic acid biosynthetic process:cytokinesis by cell plate formation:response to auxin stimulus:ovule development:regulation of plant-type hypersensitive response:response to chitin:glycolysis:negative regulation of defense response:defense response to fungus:negative regulation of programmed cell death:response to ethylene stimulus:hypotonic salinity response:detection of biotic stimulus:defense response to bacterium:endoplasmic reticulum unfolded protein response:protein targeting to membrane:abscisic acid mediated signaling pathway:pollen development:stomatal complex development:regulation of hydrogen peroxide metabolic process:cortical microtubule organization:systemic acquired resistance, salicylic acid mediated signaling pathway:hyperosmotic salinity response:regulation of protein dephosphorylation:response to cadmium ion:response to cold:Golgi organization:MAPK cascade:jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway:regulation of multi-organism process:regulation of transcription, DNA-dependent:protein phosphorylation:male meiosis cytokinesis","MAP kinase activity:protein binding:ATP binding","cytoskeleton:cytosol:nucleus:cell plate","ARATHwo_AT1G10210.1","Encodes ATMPK1.","sp|Q39021|MPK1_ARATH","Mitogen-activated protein kinase 1","gi|255074759|ref|XP_002501054.1|",null,null,"x","x",{"v":0.548537052862558,"d":"0.55"},{"v":1.95447727489339,"d":"1.95"},{"v":8.52100049161957,"d":"8.52"},{"v":17.3866079082292,"d":"17.39"}]
["g19023.t1",{"$nulls":6},"ARATHwo_AT4G33090.1","encodes an aminopeptidase, a ortholog of mouse microsomal AP (EC 3.4.11.2).","sp|P55786|PSA_HUMAN","Puromycin-sensitive aminopeptidase","gi|524864078|ref|XP_005088877.1|",null,null,"x","x",{"v":16.8271726249848,"d":"16.83"},{"v":72.0117455496362,"d":"72.01"},{"v":59.2519154498303,"d":"59.25"},{"v":44.2188586150362,"d":"44.22"}]
["g19036.t1",{"$nulls":8},"sp|P03360|POL_AVIRE","Pol polyprotein","gi|861626169|gb|KMQ88727.1|",{"$nulls":4},{"v":0.149306395852506,"d":"0.15"},{"v":0.184813924152136,"d":"0.18"},{"v":1.19698999883901,"d":"1.20"},{"v":0.40945836929782,"d":"0.41"},"X"]
["g19053.t1","0044238:0044260:0050794","0003676:0004672:0000166",null,"primary metabolic process:cellular macromolecule metabolic process:regulation of cellular process","nucleic acid binding:protein kinase activity:nucleotide binding",null,"ARATHwo_AT3G15010.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G41060.2); Has 59064 Blast hits to 28085 proteins in 1373 species: Archae - 21; Bacteria - 15117; Metazoa - 26005; Fungi - 3900; Plants - 7947; Viruses - 346; Other Eukaryotes - 5728 (source: NCBI BLink).","sp|Q9LKA4|UBA2C_ARATH","UBP1-associated protein 2C","gi|302754726|ref|XP_002960787.1|",null,"x","x","x",{"v":15.4505919595021,"d":"15.45"},{"v":11.4465161691926,"d":"11.45"},{"v":6.48771792689994,"d":"6.49"},{"v":5.80517557341173,"d":"5.81"}]
["g19063.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|590714903|ref|XP_007050046.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.361614403634654,"d":"0.36"},{"v":0.0365598807675757,"d":"0.04"},"X"]
["g19088.t1",{"$nulls":6},"ARATHwo_AT1G04900.1","Protein of unknown function (DUF185); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF185 (InterPro:IPR003788); Has 316 Blast hits to 314 proteins in 164 species: Archae - 0; Bacteria - 117; Metazoa - 2; Fungi - 113; Plants - 44; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).","sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10","gi|357126444|ref|XP_003564897.1|",{"$nulls":4},{"v":1.86840286480744,"d":"1.87"},{"v":1.3828428389552,"d":"1.38"},{"v":0.66153782708515,"d":"0.66"},{"v":0.875380467314068,"d":"0.88"},null,"X"]
["g19096.t1",{"$nulls":6},"ARATHwo_AT1G02870.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).",null,null,"gi|728813429|gb|KHG01199.1|",null,null,"x","x",{"v":37.4042088656856,"d":"37.40"},{"v":16.751768360572,"d":"16.75"},{"v":12.7132068048092,"d":"12.71"},{"v":8.27099526703676,"d":"8.27"}]
["g19111.t1",{"$nulls":10},"gi|384500928|gb|EIE91419.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.214395628331054,"d":"0.21"},{"v":0.125210616640472,"d":"0.13"},"X"]
["g19128.t1",{"$nulls":6},"ARATHwo_AT4G16050.1","Aminotransferase-like, plant mobile domain family protein; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.201157184492135,"d":"0.20"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g19144.t1",{"$nulls":13},"x","x",{"v":0.305156348602295,"d":"0.31"},{"v":1.04414772564234,"d":"1.04"},{"v":0.76315711655284,"d":"0.76"},{"v":0,"d":"0.00"}]
["g19154.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|688559892|ref|XP_009300611.1|",{"$nulls":9},"X"]
["g19282.t1",{"$nulls":10},"gi|340382901|ref|XP_003389956.1|",{"$nulls":4},{"v":0.0711106632427483,"d":"0.07"},{"v":0.321089997609092,"d":"0.32"},{"v":1.46514909752043,"d":"1.47"},{"v":0.683197047147094,"d":"0.68"},"X"]
["g19299.t1",{"$nulls":8},"sp|Q9P6K3|YLF8_SCHPO","UPF0662 protein C30C2.08","gi|552923603|gb|ESA07611.1|",null,null,"x","x",{"v":0.291208562932329,"d":"0.29"},{"v":1.89598940786104,"d":"1.90"},{"v":0.314991453924501,"d":"0.31"},{"v":172.649917657723,"d":"172.65"}]
["g19723.t1",{"$nulls":6},"ARATHwo_AT5G58010.1","Encodes a basic helix-loop-helix (bHLH) protein that regulates root hair development. One of the three Arabidopsis homologs of the Lotus japonicus ROOTHAIRLESS1 (LjRHL1) gene: At2g24260 (AtLRL1), At4g30980 (AtLRL2), and At5g58010 (AtLRL3).","sp|Q9LSQ3|BH082_ARATH","Transcription factor bHLH82",{"$nulls":5},{"v":0.0119380944840211,"d":"0.01"},{"v":6.88154108066811,"d":"6.88"},{"v":1.29529849227819,"d":"1.30"},{"v":0.183927639268365,"d":"0.18"}]
["g19741.t1",null,null,16020,null,null,"membrane","ARATHwo_AT5G21920.1","YLMG2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); BEST Arabidopsis thaliana protein match is: YGGT family protein (TAIR:AT4G27990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9C595|YLMG2_ARATH","YlmG homolog protein 2, chloroplastic","gi|590574526|ref|XP_007012427.1|",null,"x","x","x",{"v":39.1152599251322,"d":"39.12"},{"v":16.3400076401128,"d":"16.34"},{"v":3.45864403951115,"d":"3.46"},{"v":9.1602373397252,"d":"9.16"}]
["g19755.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.070676680167902,"d":"0.07"},{"v":0.127249128009884,"d":"0.13"},"X",null,"X"]
["g19775.t1",6508,"0030145:0004177",null,"proteolysis","manganese ion binding:aminopeptidase activity",null,"ARATHwo_AT4G29490.1","Metallopeptidase M24 family protein; FUNCTIONS IN: manganese ion binding, aminopeptidase activity; INVOLVED IN: cellular process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT1G09300.1); Has 11688 Blast hits to 11680 proteins in 2580 species: Archae - 275; Bacteria - 8182; Metazoa - 386; Fungi - 373; Plants - 96; Viruses - 0; Other Eukaryotes - 2376 (source: NCBI BLink).","sp|P12955|PEPD_HUMAN","Xaa-Pro dipeptidase","gi|302759483|ref|XP_002963164.1|",{"$nulls":4},{"v":4.53296614159488,"d":"4.53"},{"v":5.73188647168818,"d":"5.73"},{"v":9.21196259254685,"d":"9.21"},{"v":16.9863715783507,"d":"16.99"},null,"X"]
["g19792.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0905358331476061,"d":"0.09"},{"v":0,"d":"0.00"}]
["g19809.t1",{"$nulls":8},"sp|P03359|POL_WMSV","Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0367454229911381,"d":"0.04"},{"v":0,"d":"0.00"},"X"]
["g19827.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0.0655779551877316,"d":"0.07"},{"v":0.62346240510951,"d":"0.62"},{"v":1.61105592305978,"d":"1.61"},{"v":0.333391766568051,"d":"0.33"},"X"]
["g19311.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0364859974179263,"d":"0.04"},{"v":1.02849784645553,"d":"1.03"},{"v":0,"d":"0.00"},null,"X","X"]
["g19330.t1",6810,null,null,"transport",null,null,"ARATHwo_AT1G02520.1","Encodes an ATP-binding cassette (ABC) transporter. Expressed in the vascular tissue of primary stem.","sp|Q9FWX7|AB11B_ARATH","ABC transporter B family member 11","gi|573897724|ref|XP_006636597.1|",null,null,"x","x",{"v":7.82263186188545,"d":"7.82"},{"v":2.00236219284994,"d":"2.00"},{"v":2.27858112512494,"d":"2.28"},{"v":0.575443288805891,"d":"0.58"}]
["g19346.t1"]
["g19359.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",{"$nulls":3},"sp|P03360|POL_AVIRE","Pol polyprotein","gi|56407688|gb|AAV88076.1|",{"$nulls":4},{"v":0.0484687393414755,"d":"0.05"},{"v":1.8219296808775,"d":"1.82"},{"v":5.35833107958242,"d":"5.36"},{"v":2.69642230577463,"d":"2.70"},"X"]
["g19376.t1",{"$nulls":8},"sp|P05896|POL_SIVM1","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0348299179343619,"d":"0.03"},{"v":0.155790926733747,"d":"0.16"},{"v":3.33883318501503,"d":"3.34"},{"v":0.946749766119767,"d":"0.95"},null,"X"]
["g19394.t1",{"$nulls":6},"ARATHwo_AT1G23770.1","F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23780.1); Has 268 Blast hits to 268 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","sp|Q2T9S7|FBX7_BOVIN","F-box only protein 7","gi|629096944|gb|KCW62709.1|",{"$nulls":4},{"v":5.05897548061214,"d":"5.06"},{"v":9.50947186643821,"d":"9.51"},{"v":13.0864299087739,"d":"13.09"},{"v":20.7178245075545,"d":"20.72"}]
["g19399.t1"]
["g19422.t1"]
["g19439.t1",{"$nulls":8},"sp|O13769|ULP2_SCHPO","Ubiquitin-like-specific protease 2",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.161795815477277,"d":"0.16"},{"v":0.125918675206518,"d":"0.13"},{"v":0,"d":"0.00"}]
["g19450.t1","0043170:0044238",16787,null,"macromolecule metabolic process:primary metabolic process","hydrolase activity",null,"ARATHwo_AT5G46740.1","Encodes a ubiquitin-specific protease.","sp|Q70CQ2|UBP34_HUMAN","Ubiquitin carboxyl-terminal hydrolase 34","gi|302796125|ref|XP_002979825.1|",{"$nulls":4},{"v":0.046227086903498,"d":"0.05"},{"v":0.623826403715808,"d":"0.62"},{"v":0.243933138719459,"d":"0.24"},{"v":5.36535673881308,"d":"5.37"}]
["g19467.t1",{"$nulls":10},"gi|729404887|ref|XP_010554912.1|",{"$nulls":9},"X"]
["g19474.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|O93209|POL_FFV","Pro-Pol polyprotein","gi|10946132|gb|AAG24792.1|AF264028_2",{"$nulls":9},"X"]
["g19498.t1","0009987:0071704:0006810:0044238:0044699",null,null,"cellular process:organic substance metabolic process:transport:primary metabolic process:single-organism process",null,null,"ARATHwo_AT1G64550.1","Encodes a member of GCN subfamily. Predicted to be involved in stress-associated protein translation control. The mutant is affected in MAMP ((microbe-associated molecular patterns)-induced stomatal closure, but not other MAMP-induced responses in the leaves.","sp|Q8H0V6|AB3F_ARATH","ABC transporter F family member 3","gi|242067052|ref|XP_002454815.1|",null,null,"x","x",{"v":40.6803298725586,"d":"40.68"},{"v":45.8205515674978,"d":"45.82"},{"v":16.1900560869637,"d":"16.19"},{"v":54.8004527247955,"d":"54.80"}]
["g19515.t1",{"$nulls":20},"X","X"]
["g19532.t1",{"$nulls":6},"ARATHwo_AT2G46550.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":9.18269059930036,"d":"9.18"},{"v":22.1865791756988,"d":"22.19"},{"v":71.5617076541727,"d":"71.56"},{"v":53.5842786653883,"d":"53.58"}]
["g19545.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0738418459989344,"d":"0.07"},{"v":0,"d":"0.00"},null,"X","X"]
["g19556.t1",{"$nulls":19},"X",null,"X"]
["g88838.t1",{"$nulls":10},"gi|801994735|emb|CFO33880.1|",{"$nulls":8},"X"]
["g19579.t1",{"$nulls":13},"x","x",{"v":3.36890379679183,"d":"3.37"},{"v":1.46970611098549,"d":"1.47"},{"v":3.22607405396332,"d":"3.23"},{"v":2.90242182445662,"d":"2.90"}]
["g19596.t1",{"$nulls":19},"X",null,"X"]
["g19613.t1",{"$nulls":6},"ARATHwo_AT4G24490.1","RAB geranylgeranyl transferase alpha subunit 1 (RGTA1); FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 2 (TAIR:AT5G41820.1); Has 3834 Blast hits to 3112 proteins in 396 species: Archae - 22; Bacteria - 493; Metazoa - 1923; Fungi - 431; Plants - 375; Viruses - 2; Other Eukaryotes - 588 (source: NCBI BLink).","sp|Q55DQ4|PGTA_DICDI","Geranylgeranyl transferase type-2 subunit alpha","gi|802570163|ref|XP_012068031.1|",null,null,"x","x",{"v":8.58157164425791,"d":"8.58"},{"v":9.89091468440271,"d":"9.89"},{"v":4.43728925403796,"d":"4.44"},{"v":7.54026591412366,"d":"7.54"}]
["g19638.t1",44710,null,null,"single-organism metabolic process",null,null,"ARATHwo_AT3G53220.1","Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin 2 (TAIR:AT5G39950.1); Has 8343 Blast hits to 8341 proteins in 2235 species: Archae - 86; Bacteria - 4305; Metazoa - 749; Fungi - 428; Plants - 986; Viruses - 2; Other Eukaryotes - 1787 (source: NCBI BLink).","sp|Q7XSQ7|TRL33_ORYSJ","Thioredoxin-like 3-3","gi|168008106|ref|XP_001756748.1|",null,null,"x","x",{"v":9.33142132469224,"d":"9.33"},{"v":8.14915858501701,"d":"8.15"},{"v":6.79983928805874,"d":"6.80"},{"v":7.71582471840092,"d":"7.72"}]
["g19642.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|242775227|ref|XP_002478601.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0987923019118373,"d":"0.10"},{"v":0.3002885748903,"d":"0.30"},{"v":0,"d":"0.00"},"X"]
["g19660.t1","0055085:0030001",46873,16021,"transmembrane transport:metal ion transport","metal ion transmembrane transporter activity","integral to membrane","ARATHwo_AT3G20870.1","ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G08650.2); Has 3662 Blast hits to 3630 proteins in 1201 species: Archae - 124; Bacteria - 2163; Metazoa - 678; Fungi - 116; Plants - 147; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).","sp|Q8ENQ1|ZUPT_OCEIH","Zinc transporter ZupT","gi|546322751|ref|XP_005717882.1|",{"$nulls":4},{"v":0.0510227510648028,"d":"0.05"},{"v":0.0577635016560803,"d":"0.06"},{"v":1.56076611080749,"d":"1.56"},{"v":0.308826057493763,"d":"0.31"}]
["g88926.t1",15891,"0004872:0005506",9279,"siderophore transport","receptor activity:iron ion binding","cell outer membrane",null,null,"sp|P81549|BFRD_BORPE","Probable TonB-dependent receptor BfrD","gi|410881926|gb|EKS29766.1|",{"$nulls":8},"X"]
["g19692.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|729303393|ref|XP_010527565.1|",null,null,"x","x"]
["g19709.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g19846.t1",{"$nulls":8},"sp|Q8NEF3|CC112_HUMAN","Coiled-coil domain-containing protein 112","gi|552824427|ref|XP_005846589.1|",{"$nulls":4},{"v":0.444649144622196,"d":"0.44"},{"v":1.99418864764036,"d":"1.99"},{"v":5.00436358853929,"d":"5.00"},{"v":3.06966292799132,"d":"3.07"}]
["g19862.t1",{"$nulls":11},"x"]
["g19878.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0413767170971907,"d":"0.04"},{"v":0,"d":"0.00"},"X"]
["g20347.t1",{"$nulls":10},"gi|168054167|ref|XP_001779504.1|",null,null,"x","x",{"v":2.84987012842911,"d":"2.85"},{"v":0.787874675822344,"d":"0.79"},{"v":0.414898231092451,"d":"0.41"},{"v":0,"d":"0.00"}]
["g20365.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",{"$nulls":4},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|154297481|ref|XP_001549167.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.019423804837443,"d":"0.02"},{"v":0.0835163849202177,"d":"0.08"},"X"]
["g20385.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q8BR93|HARB1_MOUSE","Putative nuclease HARBI1","gi|556988950|ref|XP_005999530.1|",{"$nulls":9},"X"]
["g20399.t1",{"$nulls":6},"ARATHwo_AT2G17350.1","unknown protein; Has 119 Blast hits to 93 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 18; Fungi - 12; Plants - 44; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).",null,null,"gi|357516797|ref|XP_003628687.1|",null,null,"x","x",{"v":27.7516189113475,"d":"27.75"},{"v":26.6194299682618,"d":"26.62"},{"v":38.8638317543409,"d":"38.86"},{"v":12.9333021463544,"d":"12.93"}]
["g20414.t1",{"$nulls":10},"gi|303288630|ref|XP_003063603.1|",{"$nulls":4},{"v":0.815846718950661,"d":"0.82"},{"v":0.852571327129353,"d":"0.85"},{"v":2.4940006253548,"d":"2.49"},{"v":0.566947010872746,"d":"0.57"}]
["g20431.t1","0030244:0006891:0061025:0006888:0009737:0015031",149,"0005829:0016021:0000139:0005768:0005802:0005801:0005773:0005783","cellulose biosynthetic process:intra-Golgi vesicle-mediated transport:membrane fusion:ER to Golgi vesicle-mediated transport:response to abscisic acid stimulus:protein transport","SNARE binding","cytosol:integral to membrane:Golgi membrane:endosome:trans-Golgi network:cis-Golgi network:vacuole:endoplasmic reticulum","ARATHwo_AT2G45200.2","Encodes a member of the GOS1 (Golgi SNARE) gene family.","sp|O22151|GOS12_ARATH","Golgi SNAP receptor complex member 1-2","gi|891166669|dbj|BAS01243.1|",null,null,"x","x",{"v":16.0013840140023,"d":"16.00"},{"v":4.67814836470702,"d":"4.68"},{"v":3.71959415728393,"d":"3.72"},{"v":3.42131851087362,"d":"3.42"}]
["g20449.t1",{"$nulls":6},"ARATHwo_AT5G63830.1","HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9QY66|ZNHI2_MOUSE","Zinc finger HIT domain-containing protein 2","gi|702323046|ref|XP_010053085.1|",null,null,"x","x",{"v":28.7647777501296,"d":"28.76"},{"v":5.74282684334896,"d":"5.74"},{"v":5.10965374863442,"d":"5.11"},{"v":14.6729321958641,"d":"14.67"}]
["g19901.t2",null,8270,null,null,"zinc ion binding",null,"ARATHwo_AT5G04460.1","RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Ring/U-Box superfamily protein (TAIR:AT2G27950.1); Has 3702 Blast hits to 3505 proteins in 331 species: Archae - 0; Bacteria - 182; Metazoa - 2128; Fungi - 130; Plants - 551; Viruses - 33; Other Eukaryotes - 678 (source: NCBI BLink).","sp|Q9QYX7|PCLO_MOUSE","Protein piccolo","gi|168055650|ref|XP_001779837.1|",{"$nulls":4},{"v":1.95263948412542,"d":"1.95"},{"v":1.58725340333435,"d":"1.59"},{"v":4.75113471283407,"d":"4.75"},{"v":2.66531648422317,"d":"2.67"}]
["g19911.t1"]
["g19928.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|923839887|ref|XP_013700561.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.649307260368067,"d":"0.65"},{"v":0.198806022890439,"d":"0.20"},{"v":0,"d":"0.00"},"X"]
["g19937.t1",{"$nulls":8},"sp|P19560|POL_BIV29","Gag-Pol polyprotein","gi|727509438|ref|XP_010430902.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.16726434977185,"d":"0.17"},{"v":0.359878004895323,"d":"0.36"},{"v":0,"d":"0.00"},"X"]
["g19955.t1",{"$nulls":10},"gi|195357340|ref|XP_002045008.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.20116794179744,"d":"0.20"},{"v":0.928250593504017,"d":"0.93"},{"v":0.639359367899454,"d":"0.64"},"X"]
["g19965.t1",{"$nulls":8},"sp|Q65XV7|RFA1C_ORYSJ","Replication protein A 70 kDa DNA-binding subunit C",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.666013480283356,"d":"0.67"},{"v":0.112880419669267,"d":"0.11"},"X"]
["g19984.t1",{"$nulls":10},"gi|907093670|gb|KNC99512.1|"]
["g19998.t1"]
["g20015.t1",{"$nulls":6},"ARATHwo_AT1G17270.1","O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G50420.1); Has 98 Blast hits to 96 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","sp|Q8WR51|OFUT2_CAEEL","GDP-fucose protein O-fucosyltransferase 2","gi|460379539|ref|XP_004235519.1|",null,null,"x","x",{"v":2.9343931735939,"d":"2.93"},{"v":0.721518768703785,"d":"0.72"},{"v":0.723137421075357,"d":"0.72"},{"v":0.285913174922902,"d":"0.29"}]
["g89203.t1"]
["g20038.t1",{"$nulls":6},"ARATHwo_AT2G44900.1","ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.","sp|O22161|ADLO1_ARATH","Protein ARABIDILLO 1",{"$nulls":3},"x","x",{"v":2.17757805117751,"d":"2.18"},{"v":0.551184633189305,"d":"0.55"},{"v":0.855065516537637,"d":"0.86"},{"v":0.195627710761415,"d":"0.20"}]
["g20060.t1",{"$nulls":15},{"v":0.538517332358098,"d":"0.54"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.251253516444107,"d":"0.25"}]
["g20078.t1",6259,5488,null,"DNA metabolic process","binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|34452676|gb|AAQ72731.1|",{"$nulls":4},{"v":1.68106916744459,"d":"1.68"},{"v":3.81524110596027,"d":"3.82"},{"v":13.364414620677,"d":"13.36"},{"v":6.70812865303022,"d":"6.71"},"X"]
["g89272.t1",{"$nulls":13},"x","x",{"v":35.669416432115,"d":"35.67"},{"v":28.9631642775214,"d":"28.96"},{"v":7.92926644145646,"d":"7.93"},{"v":17.8889374141378,"d":"17.89"},"X",null,"X"]
["g20108.t1",{"$nulls":6},"ARATHwo_AT2G20830.2","transferases;folic acid binding; FUNCTIONS IN: folic acid binding, transferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formiminotransferase, N-terminal subdomain (InterPro:IPR012886), Essential protein Yae1, N-terminal (InterPro:IPR019191), Formiminotransferas, N- and C-terminal subdomains (InterPro:IPR022384); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q6KZM5|GLFT_PICTO","Glutamate formimidoyltransferase","gi|548839393|gb|ERM99682.1|",null,null,"x","x",{"v":1.51835189592714,"d":"1.52"},{"v":2.73577849471817,"d":"2.74"},{"v":2.75151239908865,"d":"2.75"},{"v":1.56158857488991,"d":"1.56"}]
["g20126.t1"]
["g20142.t1",{"$nulls":6},"ARATHwo_AT3G55340.1","Plant-specific protein. Interacts with phragmoplastin, Rop1 and Rop2. Involved in cell plate formation.",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.0528597771717007,"d":"0.05"},{"v":0.171721238308519,"d":"0.17"},{"v":0,"d":"0.00"}]
["g20158.t1",44710,null,null,"single-organism metabolic process",null,null,"ARATHwo_AT1G67560.1","PLAT/LH2 domain-containing lipoxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: oxidation reduction, growth; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1467 Blast hits to 1431 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 533; Fungi - 48; Plants - 781; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).","sp|Q76I22|LOX1_ORYSJ","Linoleate 9S-lipoxygenase 1","gi|658309410|ref|NP_001280985.1|",null,null,"x","x",{"v":3.16869018398698,"d":"3.17"},{"v":4.59735465223137,"d":"4.60"},{"v":1.01059586086416,"d":"1.01"},{"v":0.048111869630036,"d":"0.05"}]
["g20175.t1",{"$nulls":6},"ARATHwo_AT3G48950.1","Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G23900.1); Has 4179 Blast hits to 4160 proteins in 504 species: Archae - 6; Bacteria - 1499; Metazoa - 14; Fungi - 1097; Plants - 1422; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).","sp|A7PZL3|PGLR_VITVI","Probable polygalacturonase","gi|720067841|ref|XP_010276919.1|",{"$nulls":4},{"v":11.0160568365694,"d":"11.02"},{"v":8.57736223489382,"d":"8.58"},{"v":10.8579346230862,"d":"10.86"},{"v":6.37781994751179,"d":"6.38"}]
["g20191.t1"]
["g20209.t1"]
["g20213.t1",{"$nulls":19},"X",null,"X"]
["g20243.t1",{"$nulls":13},"x","x",{"v":3.38857172390146,"d":"3.39"},{"v":2.30391960727381,"d":"2.30"},{"v":0.349092845733136,"d":"0.35"},{"v":26.4504926646992,"d":"26.45"}]
["g20259.t1",{"$nulls":19},"X",null,"X"]
["g20274.t2",{"$nulls":6},"ARATHwo_AT1G80190.1","Similar to the PSF1 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.","sp|Q14691|PSF1_HUMAN","DNA replication complex GINS protein PSF1","gi|302766261|ref|XP_002966551.1|",{"$nulls":4},{"v":1.83452361303545,"d":"1.83"},{"v":1.71645279595469,"d":"1.72"},{"v":2.66282607403527,"d":"2.66"},{"v":4.11998734014645,"d":"4.12"}]
["g20275.t1",{"$nulls":11},"x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0.0696192873135413,"d":"0.07"},{"v":0.426618775074081,"d":"0.43"},{"v":0,"d":"0.00"}]
["g20293.t1",{"$nulls":6},"ARATHwo_AT3G05940.1","Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT5G26740.3); Has 926 Blast hits to 920 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 191; Plants - 245; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).","sp|Q6ZMB5|T184A_HUMAN","Transmembrane protein 184A","gi|548843573|gb|ERN03227.1|",null,null,"x","x",{"v":2.5924223869134,"d":"2.59"},{"v":4.01756325390007,"d":"4.02"},{"v":2.64231280707969,"d":"2.64"},{"v":2.54919174005419,"d":"2.55"}]
["g20304.t1",{"$nulls":10},"gi|260786058|ref|XP_002588076.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.141208940838447,"d":"0.14"},{"v":0,"d":"0.00"}]
["g20320.t1",44765,null,null,"single-organism transport",null,null,"ARATHwo_AT4G35080.3","high-affinity nickel-transport family protein; FUNCTIONS IN: nickel ion transmembrane transporter activity, metal ion binding; INVOLVED IN: nickel ion transport, metal ion transport, transmembrane transport; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Nickel/cobalt transporter, high-affinity (InterPro:IPR011541); BEST Arabidopsis thaliana protein match is: high-affinity nickel-transport family protein (TAIR:AT2G16800.1).","sp|Q07404|UREH_BACSB","Urease accessory protein UreH","gi|302818399|ref|XP_002990873.1|",null,null,"x","x",{"v":9.24712825630916,"d":"9.25"},{"v":13.3919061993774,"d":"13.39"},{"v":5.78988714167423,"d":"5.79"},{"v":10.1846074336713,"d":"10.18"}]
["g20336.t1",{"$nulls":6},"ARATHwo_AT5G01930.1","Encodes a endo-beta-mannanase involved in seed germination.","sp|Q9LZV3|MAN6_ARATH","Mannan endo-1,4-beta-mannosidase 6","gi|449464386|ref|XP_004149910.1|",null,"x",null,null,{"v":9.3045879243358,"d":"9.30"},{"v":0.33530938293144,"d":"0.34"},{"v":0.203753893204076,"d":"0.20"},{"v":1.56348278517157,"d":"1.56"}]
["g21773.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).","sp|O75132|ZBED4_HUMAN","Zinc finger BED domain-containing protein 4","gi|242048416|ref|XP_002461954.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0874979472536533,"d":"0.09"},{"v":0,"d":"0.00"}]
["g21800.t1",{"$nulls":15},{"v":0.0631397517261442,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.767394101471005,"d":"0.77"},{"v":1.77786188244654,"d":"1.78"},"X",null,"X"]
["g21807.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0245371797790725,"d":"0.02"},{"v":0.313687235752047,"d":"0.31"},{"v":0.0533220258082123,"d":"0.05"},"X"]
["g21824.t1",{"$nulls":13},"x","x",{"v":1.44236425069354,"d":"1.44"},{"v":2.86568860339678,"d":"2.87"},{"v":5.43598071042473,"d":"5.44"},{"v":2.27449007226108,"d":"2.27"}]
["g21841.t1",null,null,"0005634:0009507",null,null,"nucleus:chloroplast","ARATHwo_AT5G64270.1","splicing factor, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Splicing factor 3B subunit 1 (InterPro:IPR015016), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|O57683|SF3B1_XENLA","Splicing factor 3B subunit 1","gi|168002603|ref|XP_001754003.1|",{"$nulls":4},{"v":7.09731510055638,"d":"7.10"},{"v":8.25204814200197,"d":"8.25"},{"v":10.4446697815664,"d":"10.44"},{"v":10.6907426329247,"d":"10.69"}]
["g21857.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.204424962302375,"d":"0.20"},{"v":0.528205547577376,"d":"0.53"},{"v":0,"d":"0.00"}]
["g20995.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a","gi|629087263|gb|KCW53620.1|",null,null,"x","x",{"v":2.5763506562938,"d":"2.58"},{"v":7.54140958681614,"d":"7.54"},{"v":11.6604547983941,"d":"11.66"},{"v":12.3969841555978,"d":"12.40"}]
["g20999.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G78930.1","Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1485 Blast hits to 916 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 0; Plants - 1282; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).","sp|Q5ZJC8|MTEF3_CHICK","Transcription termination factor 3, mitochondrial","gi|604297561|gb|EYU17774.1|",null,null,"x","x",{"v":3.58175873040024,"d":"3.58"},{"v":2.26159799506756,"d":"2.26"},{"v":2.14655165332762,"d":"2.15"},{"v":7.4336126961727,"d":"7.43"}]
["g66500.t1",{"$nulls":8},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|154297481|ref|XP_001549167.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0995940225728023,"d":"0.10"},{"v":0,"d":"0.00"},"X"]
["g21028.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|675363786|gb|KFM56688.1|",{"$nulls":4},{"v":0.0243141547712191,"d":"0.02"},{"v":0.205901202002562,"d":"0.21"},{"v":0.250708628884896,"d":"0.25"},{"v":0.333266710430774,"d":"0.33"},"X"]
["g21045.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0242085637868457,"d":"0.02"},{"v":0.082034658102633,"d":"0.08"},{"v":0,"d":"0.00"},"X"]
["g21062.t1",{"$nulls":6},"ARATHwo_AT5G07475.1","Cupredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: uclacyanin 1 (TAIR:AT2G32300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":0.207127321954574,"d":"0.21"},{"v":0.14272360774741,"d":"0.14"},{"v":41.7515136001153,"d":"41.75"},{"v":0.860099691874063,"d":"0.86"}]
["g21076.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727591423|ref|XP_010468773.1|",{"$nulls":4},{"v":32.3676389353125,"d":"32.37"},{"v":15.4064587819538,"d":"15.41"},{"v":49.4108117187234,"d":"49.41"},{"v":2.4260683527725,"d":"2.43"},null,"X"]
["g21093.t1",{"$nulls":8},"sp|P0CT43|TF28_SCHPO","Transposon Tf2-8 polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0525003482270657,"d":"0.05"},{"v":0.511646941727375,"d":"0.51"},{"v":0.175456075600903,"d":"0.18"},"X"]
["g21110.t1",{"$nulls":6},"ARATHwo_AT5G52800.3","DNA primases; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA primase, UL52/UL70 type, Herpesviridae (InterPro:IPR004340); Has 201 Blast hits to 173 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 45; Viruses - 8; Other Eukaryotes - 66 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":0.627630357035296,"d":"0.63"},{"v":1.28414462241506,"d":"1.28"},{"v":0.975735356885893,"d":"0.98"},{"v":2.16050194630663,"d":"2.16"}]
["g21121.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.89237959329832,"d":"1.89"},{"v":0,"d":"0.00"}]
["g21138.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|15340828|gb|AAK94517.1|",{"$nulls":4},{"v":0.0313718479827958,"d":"0.03"},{"v":0.227528413641872,"d":"0.23"},{"v":1.71444310667183,"d":"1.71"},{"v":0.440639498937756,"d":"0.44"},null,"X"]
["g21158.t1",{"$nulls":6},"ARATHwo_AT5G53580.1","NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G06690.1); Has 29267 Blast hits to 29250 proteins in 2546 species: Archae - 568; Bacteria - 19101; Metazoa - 2030; Fungi - 2126; Plants - 1340; Viruses - 0; Other Eukaryotes - 4102 (source: NCBI BLink).","sp|O94315|YH5B_SCHPO","Uncharacterized oxidoreductase C215.11c","gi|168005513|ref|XP_001755455.1|",{"$nulls":4},{"v":26.4339030872949,"d":"26.43"},{"v":65.8042204751325,"d":"65.80"},{"v":22.6367255012203,"d":"22.64"},{"v":0.283309629997658,"d":"0.28"}]
["g21172.t1"]
["g21190.t1",{"$nulls":8},"sp|A5N6M2|DNAK_CLOK5","Chaperone protein DnaK","gi|761951417|gb|KIY71076.1|",{"$nulls":4},{"v":0.285550382305482,"d":"0.29"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.064825341723731,"d":"0.06"}]
["g21207.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":0.0254207342457211,"d":"0.03"},{"v":0.239197218620718,"d":"0.24"},{"v":0.565539736969071,"d":"0.57"},{"v":0.583165533351039,"d":"0.58"},"X"]
["g21220.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0585771557184226,"d":"0.06"},{"v":0.323735422857014,"d":"0.32"},{"v":0.218694853958606,"d":"0.22"},null,"X"]
["g21243.t1",9987,"0004386:0003676:0000166",null,"cellular process","helicase activity:nucleic acid binding:nucleotide binding",null,"ARATHwo_AT1G12770.1","Encodes a DEAD-box RNA helicase that localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata.","sp|Q10PV9|RH47B_ORYSJ","DEAD-box ATP-dependent RNA helicase 47B","gi|612398755|ref|XP_007514897.1|",null,null,"x","x",{"v":5.70692919890474,"d":"5.71"},{"v":1.76789099478851,"d":"1.77"},{"v":6.84228545186459,"d":"6.84"},{"v":3.97365470134879,"d":"3.97"}]
["g21253.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|923696159|ref|XP_013658200.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.188804061174612,"d":"0.19"},{"v":0.425205192458032,"d":"0.43"},{"v":0.609553261074896,"d":"0.61"},"X"]
["g21270.t1",{"$nulls":13},"x","x",{"v":4.2015651974316,"d":"4.20"},{"v":2.54418845066914,"d":"2.54"},{"v":1.42969265225503,"d":"1.43"},{"v":0.788755319508758,"d":"0.79"}]
["g21287.t1"]
["g21304.t1",{"$nulls":6},"ARATHwo_AT2G35640.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G31310.1); Has 705 Blast hits to 695 proteins in 85 species: Archae - 0; Bacteria - 25; Metazoa - 102; Fungi - 42; Plants - 506; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink)."]
["g21314.t1"]
["g21752.t1",6355,"0003700:0003677",5634,"regulation of transcription, DNA-dependent","sequence-specific DNA binding transcription factor activity:DNA binding","nucleus","ARATHwo_AT5G06250.2","AP2/B3-like transcriptional factor family protein; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G11580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9FNI3|Y5625_ARATH","B3 domain-containing protein At5g06250","gi|168022407|ref|XP_001763731.1|",{"$nulls":4},{"v":0.381508719861801,"d":"0.38"},{"v":2.28346545610495,"d":"2.28"},{"v":0.753874944816115,"d":"0.75"},{"v":0.145575392508817,"d":"0.15"}]
["g21769.t1",null,166,null,null,"nucleotide binding",null,"ARATHwo_AT3G09660.1","minichromosome maintenance 8 (MCM8); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA-dependent DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 4027 Blast hits to 3851 proteins in 539 species: Archae - 371; Bacteria - 134; Metazoa - 1249; Fungi - 930; Plants - 423; Viruses - 3; Other Eukaryotes - 917 (source: NCBI BLink).","sp|E9Q956|MCMD2_MOUSE","MCM domain-containing protein 2","gi|645220258|ref|XP_008239426.1|",null,null,"x","x",{"v":0.943408530830022,"d":"0.94"},{"v":0.886686628895885,"d":"0.89"},{"v":0.865315988283452,"d":"0.87"},{"v":0.205231029421983,"d":"0.21"}]
["g21873.t1",6265,"0003917:0003677",null,"DNA topological change","DNA topoisomerase type I activity:DNA binding",null,"ARATHwo_AT2G32000.1","DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim domain, subgroup (InterPro:IPR006154), Toprim domain (InterPro:IPR006171), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|F4ISQ7|TOP3B_ARATH","DNA topoisomerase 3-beta","gi|168067110|ref|XP_001785468.1|",{"$nulls":9},"X"]
["g21889.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",{"$nulls":4},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.315117407439821,"d":"0.32"},{"v":1.93086036447056,"d":"1.93"},{"v":0.477147091742543,"d":"0.48"},"X"]
["g89970.t1","0019262:0005975","0042802:0008747",5737,"N-acetylneuraminate catabolic process:carbohydrate metabolic process","identical protein binding:N-acetylneuraminate lyase activity","cytoplasm","ARATHwo_AT2G45440.1","Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.","sp|Q3YX23|NANA_SHISS","N-acetylneuraminate lyase","gi|319443499|pdb|3LBC|A",{"$nulls":8},"X",null,null,"g89970"]
["g22328.t1",{"$nulls":6},"ARATHwo_AT5G42760.2","Leucine carboxyl methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00027, methylltransferase (InterPro:IPR011610), Leucine carboxyl methyltransferase (InterPro:IPR007213).","sp|A1T4S8|Y1344_MYCVP","Putative S-adenosyl-L-methionine-dependent methyltransferase Mvan_1344","gi|255073583|ref|XP_002500466.1|",null,null,"x","x",{"v":6.09894180097421,"d":"6.10"},{"v":3.51110859265332,"d":"3.51"},{"v":2.06275265527427,"d":"2.06"},{"v":1.71167364309247,"d":"1.71"}]
["g22349.t1","0044699:0009987","0016740:0005488",null,"single-organism process:cellular process","transferase activity:binding",null,"ARATHwo_AT5G13530.1","Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling. KEG is essential for Arabidopsis growth and development. ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway.","sp|Q9FY48|KEG_ARATH","E3 ubiquitin-protein ligase KEG","gi|568822675|ref|XP_006465754.1|",{"$nulls":4},{"v":0.779169671999969,"d":"0.78"},{"v":0.02556915749575,"d":"0.03"},{"v":0.111224746826376,"d":"0.11"},{"v":0,"d":"0.00"}]
["g22366.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P27502|POL_RTBVP","Polyprotein P3","gi|147795669|emb|CAN69982.1|",{"$nulls":8},"X"]
["g22383.t1",{"$nulls":6},"ARATHwo_AT4G32160.1","Phox (PX) domain-containing protein; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: Phox (PX) domain-containing protein (TAIR:AT2G25350.1); Has 33521 Blast hits to 21186 proteins in 1483 species: Archae - 481; Bacteria - 3615; Metazoa - 17372; Fungi - 2745; Plants - 1628; Viruses - 165; Other Eukaryotes - 7515 (source: NCBI BLink).",null,null,"gi|302791215|ref|XP_002977374.1|",null,null,"x","x",{"v":12.9526231407374,"d":"12.95"},{"v":16.8187535812967,"d":"16.82"},{"v":12.433120593969,"d":"12.43"},{"v":18.7396981992967,"d":"18.74"}]
["g22401.t1",{"$nulls":6},"ARATHwo_AT5G22650.1","Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.","sp|Q12019|MDN1_YEAST","Midasin",{"$nulls":5},{"v":6.69870406555069,"d":"6.70"},{"v":5.41996990169171,"d":"5.42"},{"v":10.0162537664034,"d":"10.02"},{"v":12.6202920088316,"d":"12.62"}]
["g22418.t1",{"$nulls":15},{"v":26.8132644123963,"d":"26.81"},{"v":24.1740183429523,"d":"24.17"},{"v":12.3629718368553,"d":"12.36"},{"v":2.59969020893204,"d":"2.60"},null,"X","X"]
["g22435.t1",{"$nulls":6},"ARATHwo_AT1G20080.1","Encodes a synaptotagmin localized on the Golgi apparatus and that regulates protein secretion via the unconventional protein transport from the cytosol to the extracellular matrix in plant cells.","sp|Q9SKR2|SYT1_ARATH","Synaptotagmin-1","gi|302754254|ref|XP_002960551.1|",null,null,"x","x",{"v":3.014320190422,"d":"3.01"},{"v":9.0179676210893,"d":"9.02"},{"v":13.8692947725972,"d":"13.87"},{"v":4.77689930957128,"d":"4.78"}]
["g22436.t1",{"$nulls":19},"X",null,"X"]
["g21908.t1"]
["g21925.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.35779315570953,"d":"0.36"},{"v":0.153540496686974,"d":"0.15"},null,"X"]
["g21945.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0266648130824539,"d":"0.03"},{"v":0.296181272116595,"d":"0.30"},{"v":0.0625498290057807,"d":"0.06"},"X"]
["g21957.t1",{"$nulls":10},"gi|298111051|gb|ADI57934.1|",{"$nulls":4},{"v":0.0821364759872009,"d":"0.08"},{"v":0.094095239135725,"d":"0.09"},{"v":0.296660151276603,"d":"0.30"},{"v":0,"d":"0.00"},null,"X"]
["g21974.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P10401|POLY_DROME","Retrovirus-related Pol polyprotein from transposon gypsy","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.279991356254428,"d":"0.28"},{"v":0.461757502108005,"d":"0.46"},{"v":1.4510558865919,"d":"1.45"},{"v":0.578189248997037,"d":"0.58"}]
["g21991.t1",{"$nulls":6},"ARATHwo_AT1G06800.1","Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.","sp|Q941F1|PLA15_ARATH","Phospholipase A1-Igamma1, chloroplastic","gi|148905924|gb|ABR16123.1|","x",{"$nulls":3},{"v":4.9940352906184,"d":"4.99"},{"v":5.55805143212215,"d":"5.56"},{"v":2.63922059296223,"d":"2.64"},{"v":0.37849721340676,"d":"0.38"}]
["g22008.t1"]
["g22031.t1",{"$nulls":10},"gi|590720737|ref|XP_007051412.1|",{"$nulls":4},{"v":0.487740553057439,"d":"0.49"},{"v":0.886135894811458,"d":"0.89"},{"v":2.82458814157164,"d":"2.82"},{"v":1.44953259349199,"d":"1.45"},"X"]
["g90134.t1",60702,"0060698:0019899",5737,"negative regulation of endoribonuclease activity","endoribonuclease inhibitor activity:enzyme binding","cytoplasm",null,null,"sp|P0AF92|RRAB_SHIFL","Regulator of ribonuclease activity B","gi|445925098|ref|WP_000002953.1|",{"$nulls":8},"X",null,null,"g90134"]
["g22057.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.186842674020148,"d":"0.19"},{"v":1.13637556968408,"d":"1.14"},{"v":0,"d":"0.00"}]
["g22073.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":3},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|50878384|gb|AAT85159.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":4.68456934318707,"d":"4.68"},{"v":1.27031879154624,"d":"1.27"},"X"]
["g22087.t1",{"$nulls":8},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10",{"$nulls":9},"X"]
["g22114.t1",{"$nulls":8},"sp|B2KFW1|ZSC20_MOUSE","Zinc finger and SCAN domain-containing protein 20",null,"x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0.0488625538535993,"d":"0.05"},{"v":0.047157133827063,"d":"0.05"},{"v":0.0829260393854353,"d":"0.08"}]
["g22123.t1",{"$nulls":10},"gi|909992442|gb|KNG49897.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.140973753736089,"d":"0.14"},{"v":0.493855254802122,"d":"0.49"},{"v":0.0872317012405673,"d":"0.09"},null,"X"]
["g90259.t1",55114,"0051287:0009027:0000287:0050319",null,"oxidation-reduction process","NAD binding:tartrate dehydrogenase activity:magnesium ion binding:tartrate decarboxylase activity",null,"ARATHwo_AT5G03290.1","Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.","sp|P76251|DMLA_ECOLI","D-malate dehydrogenase [decarboxylating]","gi|497226742|ref|WP_009541004.1|",{"$nulls":8},"X",null,null,"g90259"]
["g22156.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q63170|DYH7_RAT","Dynein heavy chain 7, axonemal","gi|159483387|ref|XP_001699742.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0295862917482034,"d":"0.03"},{"v":5.032897643084,"d":"5.03"},{"v":0,"d":"0.00"}]
["g22173.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|401880702|gb|EJT45020.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.61664748363509,"d":"0.62"},{"v":3.96259396327343,"d":"3.96"},{"v":0.698549653106033,"d":"0.70"},"X"]
["g22190.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0928399069567679,"d":"0.09"},{"v":1.08341210047899,"d":"1.08"},{"v":0.0148895955701644,"d":"0.01"},null,"X"]
["g22204.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":0.0168541419221062,"d":"0.02"},{"v":0.0582328520715317,"d":"0.06"},{"v":0.582347502799211,"d":"0.58"},{"v":0.25351765593716,"d":"0.25"},"X"]
["g22223.t1"]
["g90349.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.284091466859403,"d":"0.28"},{"v":5.41251592300919,"d":"5.41"},{"v":0.428121097908633,"d":"0.43"},"X",null,"X"]
["g22253.t1",{"$nulls":6},"ARATHwo_AT5G60460.1","Preprotein translocase Sec, Sec61-beta subunit protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Preprotein translocase Sec, Sec61-beta subunit, eukarya (InterPro:IPR016482), Preprotein translocase Sec, Sec61-beta subunit (InterPro:IPR005609); BEST Arabidopsis thaliana protein match is: Preprotein translocase Sec, Sec61-beta subunit protein (TAIR:AT3G60540.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P38389|SC61B_ARATH","Protein transport protein Sec61 subunit beta","gi|116790817|gb|ABK25751.1|",{"$nulls":4},{"v":48.2593757469371,"d":"48.26"},{"v":24.6675304202281,"d":"24.67"},{"v":13.9363943303597,"d":"13.94"},{"v":6.08625561746608,"d":"6.09"}]
["g22271.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT2G29990.1","alternative NAD(P)H dehydrogenase 2 (NDA2); FUNCTIONS IN: NADH dehydrogenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 1 (TAIR:AT1G07180.1); Has 11797 Blast hits to 11597 proteins in 2273 species: Archae - 301; Bacteria - 9312; Metazoa - 49; Fungi - 695; Plants - 411; Viruses - 0; Other Eukaryotes - 1029 (source: NCBI BLink).","sp|O05267|YUMB_BACSU","NADH dehydrogenase-like protein YumB","gi|493800841|ref|WP_006748753.1|",null,null,"x","x",{"v":3.06599337150621,"d":"3.07"},{"v":4.48907777016667,"d":"4.49"},{"v":20.5106011096376,"d":"20.51"},{"v":9.33342575156903,"d":"9.33"}]
["g90419.t1",{"$nulls":10},"gi|916686400|ref|WP_051293491.1|",{"$nulls":8},"X",null,null,"g90419"]
["g22300.t1",{"$nulls":6},"ARATHwo_AT1G20760.1","Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G21630.1); Has 12017 Blast hits to 4944 proteins in 443 species: Archae - 20; Bacteria - 3590; Metazoa - 3650; Fungi - 1736; Plants - 412; Viruses - 16; Other Eukaryotes - 2593 (source: NCBI BLink).",null,null,"gi|743775797|ref|XP_010918291.1|",{"$nulls":4},{"v":2.79011939726384,"d":"2.79"},{"v":3.18136387129396,"d":"3.18"},{"v":3.18287601392275,"d":"3.18"},{"v":3.52315988835138,"d":"3.52"}]
["g67395.t1",{"$nulls":8},"sp|Q00962|POL_CAMVN","Enzymatic polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0325684686385625,"d":"0.03"},{"v":0.445214561754982,"d":"0.45"},{"v":0,"d":"0.00"},"X"]
["g22462.t1","0010103:0019684:0006098:0016117:0019252:0090305:0010027:0006281","0004527:0046872:0004519","0009941:0009570","stomatal complex morphogenesis:photosynthesis, light reaction:pentose-phosphate shunt:carotenoid biosynthetic process:starch biosynthetic process:nucleic acid phosphodiester bond hydrolysis:thylakoid membrane organization:DNA repair","exonuclease activity:metal ion binding:endonuclease activity","chloroplast envelope:chloroplast stroma","ARATHwo_AT3G48420.1","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G39970.1); Has 12560 Blast hits to 12559 proteins in 2179 species: Archae - 78; Bacteria - 10284; Metazoa - 135; Fungi - 145; Plants - 385; Viruses - 3; Other Eukaryotes - 1530 (source: NCBI BLink).","sp|Q94K71|GPPL2_ARATH","Haloacid dehalogenase-like hydrolase domain-containing protein At3g48420","gi|734327856|gb|KHN05797.1|",null,"x","x","x",{"v":22.6959393931954,"d":"22.70"},{"v":8.13059314795912,"d":"8.13"},{"v":3.5252583309251,"d":"3.53"},{"v":0.612643049629781,"d":"0.61"}]
["g22479.t1",{"$nulls":13},"x","x",{"v":2.81680722721247,"d":"2.82"},{"v":12.3930328099882,"d":"12.39"},{"v":19.5967063367581,"d":"19.60"},{"v":5.51530197762487,"d":"5.52"}]
["g67442.t1",{"$nulls":8},"sp|Q3IJ53|IF2_PSEHT","Translation initiation factor IF-2"]
["g23181.t1",{"$nulls":10},"gi|923839887|ref|XP_013700561.1|",{"$nulls":4},{"v":0.0283722048566102,"d":"0.03"},{"v":0.038067902706026,"d":"0.04"},{"v":0.48096343750206,"d":"0.48"},{"v":0,"d":"0.00"},"X"]
["g23199.t1",{"$nulls":10},"gi|823251190|ref|XP_012458200.1|",{"$nulls":4},{"v":0.0631997870512112,"d":"0.06"},{"v":0.33425643217168,"d":"0.33"},{"v":1.24052570791326,"d":"1.24"},{"v":0,"d":"0.00"},"X"]
["g23215.t1",null,null,"0044444:0043231",null,null,"cytoplasmic part:intracellular membrane-bounded organelle",{"$nulls":4},"gi|731318879|ref|XP_010669960.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.160579846356089,"d":"0.16"},{"v":0,"d":"0.00"}]
["g23231.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P19199|POL_COYMV","Polyprotein P3","gi|374081772|dbj|BAL46523.1|",{"$nulls":9},"X"]
["g23237.t1",{"$nulls":10},"gi|551581179|ref|XP_005776090.1|"]
["g23266.t1","0006259:0006974","0003676:0005515",5662,"DNA metabolic process:response to DNA damage stimulus","nucleic acid binding:protein binding","DNA replication factor A complex","ARATHwo_AT5G08020.1","Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.","sp|Q9SD82|RFA1B_ARATH","Replication protein A 70 kDa DNA-binding subunit B","gi|729367914|ref|XP_010547749.1|",null,null,"x","x",{"v":2.67893991796582,"d":"2.68"},{"v":1.27880829897532,"d":"1.28"},{"v":1.33848023492695,"d":"1.34"},{"v":2.14053411091543,"d":"2.14"}]
["g90575.t1",{"$nulls":8},"sp|P15948|K1B22_MOUSE","Kallikrein 1-related peptidase b22",null,null,"x",null,"x",{"v":11.9836991840674,"d":"11.98"},{"v":17.5698349813981,"d":"17.57"},{"v":2.43340700563931,"d":"2.43"},{"v":0,"d":"0.00"}]
["g22845.t1","0051788:0006312:0007067:0007131:0010252:0009791:0042138:0051510:0006302:0048608:0043161:0016567:0051302:0032875:0007276:0007129:0007062:0043248",null,5680,"response to misfolded protein:mitotic recombination:mitosis:reciprocal meiotic recombination:auxin homeostasis:post-embryonic development:meiotic DNA double-strand break formation:regulation of unidimensional cell growth:double-strand break repair:reproductive structure development:proteasomal ubiquitin-dependent protein catabolic process:protein ubiquitination:regulation of cell division:regulation of DNA endoreduplication:gamete generation:synapsis:sister chromatid cohesion:proteasome assembly",null,"anaphase-promoting complex","ARATHwo_AT5G05560.1","Arabidopsis thaliana E3 ubiquitin ligase","sp|Q9FFF9|APC1_ARATH","Anaphase-promoting complex subunit 1","gi|168035557|ref|XP_001770276.1|",{"$nulls":4},{"v":0.274570095817663,"d":"0.27"},{"v":1.43171729780488,"d":"1.43"},{"v":2.68990451707113,"d":"2.69"},{"v":0.936478667415275,"d":"0.94"}]
["g22860.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P03554|POL_CAMVS","Enzymatic polyprotein","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":0.0573027341363874,"d":"0.06"},{"v":0.0641384207041727,"d":"0.06"},{"v":1.02239342541909,"d":"1.02"},{"v":0.136781588267981,"d":"0.14"},null,"X"]
["g22869.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.208509261514418,"d":"0.21"},{"v":0.515120728942581,"d":"0.52"},{"v":0.274765194973192,"d":"0.27"},null,"X","X"]
["g22892.t1",{"$nulls":6},"ARATHwo_AT2G02570.1","nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.112570801530506,"d":"0.11"},{"v":0,"d":"0.00"}]
["g22909.t1",{"$nulls":6},"ARATHwo_AT5G49540.1","Rab5-interacting family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF786 (InterPro:IPR008504); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q1ZXH4|EMC6_DICDI","ER membrane protein complex subunit 6","gi|802705447|ref|XP_012084121.1|",null,null,"x","x",{"v":6.99017976580976,"d":"6.99"},{"v":7.65644549870983,"d":"7.66"},{"v":3.28819791063092,"d":"3.29"},{"v":7.34845054414764,"d":"7.35"}]
["g22925.t1",{"$nulls":8},"sp|Q9HBL0|TENS1_HUMAN","Tensin-1","gi|545372133|ref|XP_005650565.1|",null,null,"x","x",{"v":0.683625854581886,"d":"0.68"},{"v":2.90225136013871,"d":"2.90"},{"v":4.03270752457266,"d":"4.03"},{"v":1.14497238041523,"d":"1.14"}]
["g22940.t1","0019684:0006098:0016117:0035304:0009902:0015995:0019288:0010304:0034660:0009561:0042793:0010027","0031072:0051082",9535,"photosynthesis, light reaction:pentose-phosphate shunt:carotenoid biosynthetic process:regulation of protein dephosphorylation:chloroplast relocation:chlorophyll biosynthetic process:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:PSII associated light-harvesting complex II catabolic process:ncRNA metabolic process:megagametogenesis:transcription from plastid promoter:thylakoid membrane organization","heat shock protein binding:unfolded protein binding","chloroplast thylakoid membrane","ARATHwo_AT2G34860.1","embryo sac development arrest 3 (EDA3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 773 Blast hits to 773 proteins in 260 species: Archae - 32; Bacteria - 427; Metazoa - 13; Fungi - 2; Plants - 175; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).","sp|O64750|EDA3_ARATH","Protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic","gi|414869817|tpg|DAA48374.1|",null,"x","x","x",{"v":37.1474248863095,"d":"37.15"},{"v":8.22875842789834,"d":"8.23"},{"v":5.86569984585673,"d":"5.87"},{"v":0.186254163629678,"d":"0.19"}]
["g22941.t1",{"$nulls":10},"gi|168019512|ref|XP_001762288.1|",null,null,"x","x",{"v":15.0076947425087,"d":"15.01"},{"v":24.1630235612297,"d":"24.16"},{"v":11.5084754652867,"d":"11.51"},{"v":20.8518788295999,"d":"20.85"}]
["g22970.t1",{"$nulls":10},"gi|242064624|ref|XP_002453601.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0249875945207511,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.0421261051140307,"d":"0.04"},"X"]
["g22974.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|571443008|ref|XP_006575970.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.210992151637312,"d":"0.21"},{"v":1.81037654988708,"d":"1.81"},{"v":0.173046207108031,"d":"0.17"},"X"]
["g22990.t1",{"$nulls":11},"x"]
["g23007.t1",{"$nulls":6},"ARATHwo_AT3G09860.1","unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",{"$nulls":4},"x","x","x",{"v":83.691960889825,"d":"83.69"},{"v":47.4919243093373,"d":"47.49"},{"v":18.8204978819426,"d":"18.82"},{"v":80.3875457595177,"d":"80.39"}]
["g23024.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|754352635|ref|XP_011270808.1|",{"$nulls":4},{"v":0.0288149997353934,"d":"0.03"},{"v":0.0557393163391167,"d":"0.06"},{"v":0.913948192146425,"d":"0.91"},{"v":0.305868625656679,"d":"0.31"},"X"]
["g23038.t1",{"$nulls":6},"ARATHwo_AT1G80980.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80700.1); Has 477 Blast hits to 341 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).",{"$nulls":4},"x","x","x",{"v":76.2169257526456,"d":"76.22"},{"v":26.2202437153177,"d":"26.22"},{"v":19.3419719998226,"d":"19.34"},{"v":43.1851842979299,"d":"43.19"}]
["g23056.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.04112155862756,"d":"0.04"},{"v":0.155643318518613,"d":"0.16"},{"v":0,"d":"0.00"}]
["g23074.t1",44710,16491,null,"single-organism metabolic process","oxidoreductase activity",null,"ARATHwo_AT5G07990.1","Required for flavonoid 3' hydroxylase activity. Enzyme abundance relative to CHS determines Quercetin/Kaempferol metabolite ratio.","sp|Q9SD85|F3PH_ARATH","Flavonoid 3'-monooxygenase","gi|645230747|ref|XP_008222072.1|",{"$nulls":4},{"v":0.346046618644404,"d":"0.35"},{"v":2.54811391970971,"d":"2.55"},{"v":0.660584384294377,"d":"0.66"},{"v":45.3443158041862,"d":"45.34"}]
["g23086.t1",6414,"0003746:0005525:0003924",5737,"translational elongation","translation elongation factor activity:GTP binding:GTPase activity","cytoplasm","ARATHwo_AT4G02930.1","GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).","sp|Q9ZT91|EFTM_ARATH","Elongation factor Tu, mitochondrial","gi|747066244|ref|XP_011079800.1|",null,"x","x","x",{"v":18.7441354070554,"d":"18.74"},{"v":7.57234121118781,"d":"7.57"},{"v":2.26728306722267,"d":"2.27"},{"v":2.57422862689113,"d":"2.57"}]
["g23102.t1",{"$nulls":15},{"v":0.0363667365389637,"d":"0.04"},{"v":0.346043063813689,"d":"0.35"},{"v":2.28464760538867,"d":"2.28"},{"v":1.0420480919771,"d":"1.04"},"X",null,"X"]
["g23122.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0.0385688659850287,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.062012237289584,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g23134.t1",{"$nulls":15},{"v":3.56581094614562,"d":"3.57"},{"v":4.50837496018058,"d":"4.51"},{"v":2.82071493988375,"d":"2.82"},{"v":11.9885178388375,"d":"11.99"}]
["g23152.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.041932144906328,"d":"0.04"},{"v":0.315415827618157,"d":"0.32"},{"v":0.11902163394267,"d":"0.12"},null,"X","X"]
["g91022.t1",{"$nulls":19},"X",null,"X"]
["g23297.t1",{"$nulls":13},"x","x",{"v":0.926484458749818,"d":"0.93"},{"v":1.775939384586,"d":"1.78"},{"v":0.903606909825473,"d":"0.90"},{"v":1.21299331266495,"d":"1.21"},"X",null,"X"]
["g23320.t1"]
["g23734.t1",6413,3676,"0032991:0044444","translational initiation","nucleic acid binding","macromolecular complex:cytoplasmic part","ARATHwo_AT3G11400.2","One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).","sp|A7SKE9|EIF3G_NEMVE","Eukaryotic translation initiation factor 3 subunit G","gi|168026218|ref|XP_001765629.1|",null,"x","x","x",{"v":119.938086368964,"d":"119.94"},{"v":53.0893278771981,"d":"53.09"},{"v":25.7847525277402,"d":"25.78"},{"v":33.1643671555033,"d":"33.16"}]
["g23751.t1",{"$nulls":15},{"v":0.127648495399799,"d":"0.13"},{"v":1.25587994276121,"d":"1.26"},{"v":3.40195101241844,"d":"3.40"},{"v":0,"d":"0.00"}]
["g23766.t1",{"$nulls":19},"X",null,"X"]
["g23781.t1",{"$nulls":6},"ARATHwo_AT5G02860.1","Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 78068 Blast hits to 16233 proteins in 339 species: Archae - 4; Bacteria - 143; Metazoa - 1692; Fungi - 1544; Plants - 71427; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink).","sp|Q9LYZ9|PP362_ARATH","Pentatricopeptide repeat-containing protein At5g02860","gi|702498081|ref|XP_010037616.1|",null,null,"x","x",{"v":16.0557008830618,"d":"16.06"},{"v":12.7445629996225,"d":"12.74"},{"v":7.39780690990303,"d":"7.40"},{"v":20.5289584544275,"d":"20.53"}]
["g23805.t1","0006096:0006006:0055114","0051287:0050661:0004365",5737,"glycolysis:glucose metabolic process:oxidation-reduction process","NAD binding:NADP binding:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity","cytoplasm","ARATHwo_AT3G04120.1","encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.","sp|Q39769|G3PC_GINBI","Glyceraldehyde-3-phosphate dehydrogenase, cytosolic","gi|18073143|emb|CAC80379.1|",null,"x","x","x",{"v":3856.15826200746,"d":"3856.16"},{"v":79.17395263667,"d":"79.17"},{"v":69.6793284751147,"d":"69.68"},{"v":1.17176079085906,"d":"1.17"}]
["g23813.t2",6099,"0004591:0030976",null,"tricarboxylic acid cycle","oxoglutarate dehydrogenase (succinyl-transferring) activity:thiamine pyrophosphate binding",{"$nulls":5},"gi|168056052|ref|XP_001780036.1|",{"$nulls":4},{"v":11.26229196635,"d":"11.26"},{"v":17.2756700569465,"d":"17.28"},{"v":7.39850005228354,"d":"7.40"},{"v":18.8654248754957,"d":"18.87"}]
["g23829.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|727590771|ref|XP_010468407.1|"]
["g23845.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.177876819569283,"d":"0.18"},{"v":0.075484977711903,"d":"0.08"},null,"X"]
["g23339.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":9},"X"]
["g23353.t1",null,16787,9536,null,"hydrolase activity","plastid","ARATHwo_AT5G47650.1","Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.","sp|Q94B74|NUDT2_ARATH","Nudix hydrolase 2","gi|302791974|ref|XP_002977753.1|",null,null,"x","x",{"v":20.7910427932053,"d":"20.79"},{"v":23.0812811532935,"d":"23.08"},{"v":8.65637891310121,"d":"8.66"},{"v":8.40929269684017,"d":"8.41"}]
["g91154.t1",9987,16772,null,"cellular process","transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT5G10720.1","member of Histidine Kinase","sp|Q54SP4|DHKD_DICDI","Hybrid signal transduction histidine kinase D","gi|751571480|ref|WP_041040349.1|",{"$nulls":8},"X",null,null,"g91154"]
["g23384.t1","0000413:0006623:0006457","0042277:0003755:0005515","0005829:0005771:0005795:0016020:0005783","protein peptidyl-prolyl isomerization:protein targeting to vacuole:protein folding","peptide binding:peptidyl-prolyl cis-trans isomerase activity:protein binding","cytosol:multivesicular body:Golgi stack:membrane:endoplasmic reticulum","ARATHwo_AT2G29960.1","encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.","sp|Q8LDP4|CP19D_ARATH","Peptidyl-prolyl cis-trans isomerase CYP19-4","gi|743865206|ref|XP_011032116.1|",null,null,"x","x",{"v":0.194405381753992,"d":"0.19"},{"v":0.525649151984248,"d":"0.53"},{"v":48.6641243112458,"d":"48.66"},{"v":1.16160867192246,"d":"1.16"}]
["g23402.t1","0006261:0044699",null,null,"DNA-dependent DNA replication:single-organism process",{"$nulls":6},"gi|302815970|ref|XP_002989665.1|",null,null,"x","x",{"v":2.30619547101563,"d":"2.31"},{"v":0.103574471866079,"d":"0.10"},{"v":1.2578783546112,"d":"1.26"},{"v":0.178508439525631,"d":"0.18"}]
["g67862.t1",{"$nulls":13},"x","x"]
["g23433.t1",{"$nulls":10},"gi|310753565|gb|ADP20179.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.147104890358783,"d":"0.15"},{"v":0.487938186593876,"d":"0.49"},{"v":0.109802147536072,"d":"0.11"}]
["g23450.t1",1731,3743,"0016282:0005852:0033290","formation of translation preinitiation complex","translation initiation factor activity","eukaryotic 43S preinitiation complex:eukaryotic translation initiation factor 3 complex:eukaryotic 48S preinitiation complex","ARATHwo_AT1G10840.1","Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).","sp|Q9C5Z2|EIF3H_ARATH","Eukaryotic translation initiation factor 3 subunit H","gi|302813453|ref|XP_002988412.1|",null,"x","x","x",{"v":97.4803038720323,"d":"97.48"},{"v":62.85042681157,"d":"62.85"},{"v":25.9889387625223,"d":"25.99"},{"v":92.2274244707516,"d":"92.23"}]
["g23469.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.168053511199204,"d":"0.17"},{"v":0,"d":"0.00"},"X",null,"X"]
["g23486.t1",{"$nulls":10},"gi|751675903|gb|KIM26087.1|",null,"x","x","x",{"v":188.032242590988,"d":"188.03"},{"v":153.633808729922,"d":"153.63"},{"v":51.2272111773706,"d":"51.23"},{"v":12.1092581023058,"d":"12.11"}]
["g23502.t1",{"$nulls":13},"x","x",{"v":36.4215055728773,"d":"36.42"},{"v":9.05257824233804,"d":"9.05"},{"v":8.95861728769538,"d":"8.96"},{"v":6.26297595968276,"d":"6.26"}]
["g23516.t1",8152,16747,null,"metabolic process","transferase activity, transferring acyl groups other than amino-acyl groups",{"$nulls":5},"gi|901801810|gb|KMZ61679.1|"]
["g23535.t1",{"$nulls":6},"ARATHwo_AT3G19360.1","Zinc finger (CCCH-type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein (TAIR:AT1G32360.1); Has 1128 Blast hits to 788 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 86; Plants - 385; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).","sp|Q84UQ3|C3H56_ORYSJ","Zinc finger CCCH domain-containing protein 56","gi|902202848|gb|KNA14384.1|",{"$nulls":4},{"v":1.54680245868644,"d":"1.55"},{"v":0.887013253348494,"d":"0.89"},{"v":1.08653692645738,"d":"1.09"},{"v":0.273959112801622,"d":"0.27"}]
["g23550.t1",{"$nulls":15},{"v":0.0342668997116215,"d":"0.03"},{"v":0,"d":"0.00"},{"v":1.75811186148508,"d":"1.76"},{"v":0,"d":"0.00"}]
["g23568.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.189487393365225,"d":"0.19"},{"v":0.794892203936145,"d":"0.79"},{"v":0,"d":"0.00"},"X"]
["g23585.t1",{"$nulls":6},"ARATHwo_AT1G08220.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast hits to 168 proteins in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).",null,null,"gi|923912317|ref|XP_013725862.1|",{"$nulls":4},{"v":4.81440826493086,"d":"4.81"},{"v":1.41520668511232,"d":"1.42"},{"v":1.29224281253298,"d":"1.29"},{"v":2.64078950293721,"d":"2.64"}]
["g23601.t1",{"$nulls":10},"gi|682355441|gb|KFY45433.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.090182074596753,"d":"0.09"},{"v":0,"d":"0.00"}]
["g23606.t1","0006457:0009816","0005524:0051082",5737,"protein folding:defense response to bacterium, incompatible interaction","ATP binding:unfolded protein binding","cytoplasm","ARATHwo_AT5G52640.1","Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.","sp|Q07078|HSP83_ORYSJ","Heat shock protein 81-3","gi|255977231|dbj|BAH97107.1|",{"$nulls":4},{"v":67.141548161595,"d":"67.14"},{"v":215.094080001083,"d":"215.09"},{"v":88.5707627087915,"d":"88.57"},{"v":110.406250961018,"d":"110.41"}]
["g23637.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0145854025614823,"d":"0.01"},{"v":0.0168300797278389,"d":"0.02"},{"v":0,"d":"0.00"},null,"X"]
["g23652.t1",{"$nulls":6},"ARATHwo_AT4G14440.1","encodes a cytosolic delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation","sp|O23300|ECI3_ARATH","Enoyl-CoA delta isomerase 3","gi|302764664|ref|XP_002965753.1|",{"$nulls":4},{"v":10.5311513366322,"d":"10.53"},{"v":7.03998192043665,"d":"7.04"},{"v":8.53115288891454,"d":"8.53"},{"v":1.78890184945819,"d":"1.79"}]
["g23653.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.105783768425623,"d":"0.11"},{"v":0.486104053291054,"d":"0.49"},{"v":0.0699766278297517,"d":"0.07"},"X"]
["g23670.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.685215400632404,"d":"0.69"},{"v":0,"d":"0.00"},null,"X","X"]
["g23695.t1",55114,"0005488:0004601:0051920","0009941:0009505:0009570:0009579","oxidation-reduction process","binding:peroxidase activity:peroxiredoxin activity","chloroplast envelope:plant-type cell wall:chloroplast stroma:thylakoid","ARATHwo_AT3G52960.1","Thioredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: defense response to bacterium, peptidyl-cysteine S-nitrosylation; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: thioredoxin-dependent peroxidase 1 (TAIR:AT1G65980.1); Has 4202 Blast hits to 4202 proteins in 933 species: Archae - 58; Bacteria - 1639; Metazoa - 177; Fungi - 321; Plants - 255; Viruses - 0; Other Eukaryotes - 1752 (source: NCBI BLink).","sp|Q949U7|PRX2E_ARATH","Peroxiredoxin-2E, chloroplastic","gi|552846170|ref|XP_005851545.1|",null,null,"x","x",{"v":121.581763739643,"d":"121.58"},{"v":74.7421556349596,"d":"74.74"},{"v":24.6255390631774,"d":"24.63"},{"v":7.20046329867156,"d":"7.20"}]
["g23705.t1",{"$nulls":8},"sp|Q99PL5|RRBP1_MOUSE","Ribosome-binding protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.151286432908845,"d":"0.15"},{"v":0.365240222093694,"d":"0.37"},{"v":0,"d":"0.00"},"X"]
["g23722.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.175531708013717,"d":"0.18"},{"v":0,"d":"0.00"}]
["g23856.t1"]
["g23873.t1",8152,16837,null,"metabolic process","carbon-oxygen lyase activity, acting on polysaccharides",{"$nulls":3},"sp|P0AFT1|MEPM_SHIFL","Murein DD-endopeptidase MepM","gi|168031336|ref|XP_001768177.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.1064664501799,"d":"0.11"},{"v":0,"d":"0.00"}]
["g23891.t1","0044699:0006468:0050789","0000166:0004674",null,"single-organism process:protein phosphorylation:regulation of biological process","nucleotide binding:protein serine/threonine kinase activity",null,"ARATHwo_AT3G19300.1","Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G49730.1); Has 120929 Blast hits to 119432 proteins in 4683 species: Archae - 125; Bacteria - 14225; Metazoa - 45087; Fungi - 10031; Plants - 33279; Viruses - 564; Other Eukaryotes - 17618 (source: NCBI BLink).","sp|Q9FE20|PBS1_ARATH","Serine/threonine-protein kinase PBS1","gi|157101316|dbj|BAF79989.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0637909904100512,"d":"0.06"},{"v":0.182748347885567,"d":"0.18"},{"v":0.0330574231030804,"d":"0.03"}]
["g23920.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.","sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|270015272|gb|EFA11720.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0352088342487183,"d":"0.04"},{"v":0.572792016124512,"d":"0.57"},{"v":0.0829260393854353,"d":"0.08"},"X"]
["g23925.t1",{"$nulls":19},"X",null,"X"]
["g23940.t1",{"$nulls":15},{"v":0.179319057676027,"d":"0.18"},{"v":0.265834039625206,"d":"0.27"},{"v":27.8646411309367,"d":"27.86"},{"v":0.527412668540422,"d":"0.53"}]
["g23955.t1",{"$nulls":6},"ARATHwo_AT5G37710.1","alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|902074378|gb|KNA03037.1|",null,null,"x","x",{"v":0.38826000519661,"d":"0.39"},{"v":1.01913984120666,"d":"1.02"},{"v":1.10519918299117,"d":"1.11"},{"v":9.57763978640425,"d":"9.58"}]
["g68190.t1"]
["g23984.t1","0043170:0044238","0005488:0003824",null,"macromolecule metabolic process:primary metabolic process","binding:catalytic activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|401889065|gb|EJT53006.1|","x",{"$nulls":3},{"v":0.0104284393296258,"d":"0.01"},{"v":0.157782201867161,"d":"0.16"},{"v":2.53472899988308,"d":"2.53"},{"v":0.170716901445515,"d":"0.17"},null,"X"]
["g24004.t1",{"$nulls":6},"ARATHwo_AT5G61390.1","Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G07710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q0V842|NEN2_ARATH","Protein NEN2","gi|802653172|ref|XP_012080305.1|",null,null,"x","x",{"v":0.283846845169405,"d":"0.28"},{"v":4.8129087021583,"d":"4.81"},{"v":2.72464528681833,"d":"2.72"},{"v":5.03423901532303,"d":"5.03"}]
["g24021.t1",{"$nulls":8},"sp|A3KPW9|BAG6_DANRE","Large proline-rich protein BAG6",{"$nulls":3},"x","x"]
["g24038.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.187253321668606,"d":"0.19"},{"v":0.474087702803224,"d":"0.47"},{"v":0.742153466995088,"d":"0.74"},"X",null,"X"]
["g24054.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":5},"gi|34015184|gb|AAQ56379.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.262868796239205,"d":"0.26"},{"v":0.699406542749473,"d":"0.70"},{"v":0.130741830761759,"d":"0.13"},"X"]
["g24073.t1",{"$nulls":6},"ARATHwo_AT3G49660.1","Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex.","sp|Q28I85|POC1A_XENTR","POC1 centriolar protein homolog A","gi|159483209|ref|XP_001699653.1|",null,null,"x","x",{"v":0.141507137143908,"d":"0.14"},{"v":2.17247628418061,"d":"2.17"},{"v":4.10630775898345,"d":"4.11"},{"v":0.975290663970746,"d":"0.98"}]
["g24090.t1",{"$nulls":15},{"v":0.257257385850693,"d":"0.26"},{"v":3.21436242302376,"d":"3.21"},{"v":4.56738759084095,"d":"4.57"},{"v":3.66940551389044,"d":"3.67"},null,"X","X"]
["g24107.t1",null,5488,null,null,"binding",null,"ARATHwo_AT5G56930.1","embryo defective 1789 (emb1789); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 4013 Blast hits to 1845 proteins in 273 species: Archae - 0; Bacteria - 114; Metazoa - 1017; Fungi - 647; Plants - 283; Viruses - 3; Other Eukaryotes - 1949 (source: NCBI BLink).","sp|Q9LTS7|C3H65_ARATH","Zinc finger CCCH domain-containing protein 65","gi|168063820|ref|XP_001783866.1|",{"$nulls":4},{"v":1.47929447150197,"d":"1.48"},{"v":2.69058939368382,"d":"2.69"},{"v":3.28086504095184,"d":"3.28"},{"v":9.45623128065716,"d":"9.46"}]
["g24123.t1","0045454:0019419",16671,null,"cell redox homeostasis:sulfate reduction","oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor",null,"ARATHwo_AT4G21990.1","Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.","sp|P92980|APR3_ARATH","5'-adenylylsulfate reductase 3, chloroplastic","gi|470114191|ref|XP_004293300.1|",null,null,"x","x",{"v":15.491865293003,"d":"15.49"},{"v":6.08020149699467,"d":"6.08"},{"v":7.42102769935247,"d":"7.42"},{"v":11.2638095441548,"d":"11.26"}]
["g24140.t1",{"$nulls":15},{"v":0.0976958323810792,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0.217599510791855,"d":"0.22"},{"v":0,"d":"0.00"}]
["g24162.t1",55114,"0009916:0046872","0016021:0070469","oxidation-reduction process","alternative oxidase activity:metal ion binding","integral to membrane:respiratory chain",null,null,"sp|Q8J0I8|AOX_YARLI","Alternative oxidase, mitochondrial","gi|46452193|gb|AAS98193.1|",{"$nulls":4},{"v":3.14266880063228,"d":"3.14"},{"v":0.123280768150585,"d":"0.12"},{"v":0.095840539116028,"d":"0.10"},{"v":0.282530846397954,"d":"0.28"}]
["g24176.t1",{"$nulls":20},"X","X"]
["g24193.t1"]
["g24211.t1"]
["g24227.t1",{"$nulls":8},"sp|Q6ZTR5|CFA47_HUMAN","Cilia- and flagella-associated protein 47","gi|857976791|emb|CEO97586.1|",{"$nulls":4},{"v":0.0587038698878311,"d":"0.06"},{"v":0.0996485666246094,"d":"0.10"},{"v":18.1412825296268,"d":"18.14"},{"v":0.0250540750868411,"d":"0.03"}]
["g25726.t1",{"$nulls":15},{"v":1.28200518361767,"d":"1.28"},{"v":2.85351700055626,"d":"2.85"},{"v":8.24011696356706,"d":"8.24"},{"v":5.58205257186675,"d":"5.58"},null,"X","X"]
["g25735.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",null,"ARATHwo_AT2G26060.1","embryo defective 1345 (emb1345); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G32990.1); Has 69948 Blast hits to 29854 proteins in 810 species: Archae - 58; Bacteria - 8000; Metazoa - 27493; Fungi - 15911; Plants - 9301; Viruses - 0; Other Eukaryotes - 9185 (source: NCBI BLink).","sp|Q5F3R7|DCA12_CHICK","DDB1- and CUL4-associated factor 12","gi|923670453|ref|XP_013650493.1|",{"$nulls":9},"X"]
["g32141.t1",{"$nulls":15},{"v":5.52964345007598,"d":"5.53"},{"v":31.3023882704207,"d":"31.30"},{"v":15.1966172388658,"d":"15.20"},{"v":0.163049535968171,"d":"0.16"}]
["g32158.t1",{"$nulls":8},"sp|Q89703|POL_CSVMV","Putative enzymatic polyprotein","gi|568882001|ref|XP_006493831.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.154996676660701,"d":"0.15"},{"v":0.581286850765418,"d":"0.58"},{"v":0.440519682030984,"d":"0.44"},"X"]
["g32174.t1"]
["g32191.t1",{"$nulls":8},"sp|Q8K2G4|BBS7_MOUSE","Bardet-Biedl syndrome 7 protein homolog","gi|387965727|gb|AFK13856.1|",{"$nulls":4},{"v":3.4507662747708,"d":"3.45"},{"v":0.580261367548224,"d":"0.58"},{"v":7.22766766820922,"d":"7.23"},{"v":1.99922680549622,"d":"2.00"},null,"X"]
["g32203.t1",{"$nulls":15},{"v":0.028518283286908,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.687937658018864,"d":"0.69"},{"v":0.0542529147505543,"d":"0.05"},"X",null,"X"]
["g32226.t1",{"$nulls":10},"gi|599398641|ref|XP_007400580.1|",{"$nulls":4},{"v":0.0343262718043071,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.0640454086598327,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g32244.t1",{"$nulls":6},"ARATHwo_AT1G34000.1","Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions.",null,null,"gi|168007372|ref|XP_001756382.1|",{"$nulls":4},{"v":32.6043603624794,"d":"32.60"},{"v":13.1113952352949,"d":"13.11"},{"v":9.80291799779211,"d":"9.80"},{"v":3.33589266553675,"d":"3.34"}]
["g32260.t1",{"$nulls":8},"sp|Q8BTQ0|PCGF3_MOUSE","Polycomb group RING finger protein 3",{"$nulls":5},{"v":0.0877631335894384,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0.170441657759587,"d":"0.17"},{"v":1.63689337110132,"d":"1.64"}]
["g32276.t1",8152,4553,16023,"metabolic process","hydrolase activity, hydrolyzing O-glycosyl compounds","cytoplasmic membrane-bounded vesicle","ARATHwo_AT1G65590.1","Encodes a protein with beta-hexosaminidase activity. Located on the plasma membrane.","sp|Q8L7S6|HEXO3_ARATH","Beta-hexosaminidase 3","gi|769794776|ref|XP_011628773.1|",null,null,"x","x",{"v":0.0380282392072736,"d":"0.04"},{"v":0.124217796898762,"d":"0.12"},{"v":8.29847460926033,"d":"8.30"},{"v":0.0868662463415627,"d":"0.09"}]
["g32292.t1"]
["g32310.t1","0031047:0007275:0016570:0006259:0050896:0006355:0006479:0040029","1901363:0016740:0097159",null,"gene silencing by RNA:multicellular organismal development:histone modification:DNA metabolic process:response to stimulus:regulation of transcription, DNA-dependent:protein methylation:regulation of gene expression, epigenetic","heterocyclic compound binding:transferase activity:organic cyclic compound binding",null,"ARATHwo_AT5G13960.1","Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.","sp|Q8GZB6|SUVH4_ARATH","Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4","gi|923540112|ref|XP_013727497.1|",null,null,"x","x",{"v":2.01753977962147,"d":"2.02"},{"v":6.12517587064149,"d":"6.13"},{"v":6.40429611155582,"d":"6.40"},{"v":2.20692448395528,"d":"2.21"}]
["g32327.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.049941530885212,"d":"0.05"},{"v":0.347670690795045,"d":"0.35"},{"v":0,"d":"0.00"}]
["g32344.t1",{"$nulls":13},"x","x",{"v":9.27157508979516,"d":"9.27"},{"v":9.59123907386768,"d":"9.59"},{"v":14.1169151300913,"d":"14.12"},{"v":5.33145322410105,"d":"5.33"}]
["g26070.t1",{"$nulls":20},"X","X"]
["g26071.t1",{"$nulls":15},{"v":0.0374950488459078,"d":"0.04"},{"v":0.222405817258358,"d":"0.22"},{"v":1.85524514490267,"d":"1.86"},{"v":0.36987511751833,"d":"0.37"},"X",null,"X"]
["g26088.t1",{"$nulls":6},"ARATHwo_AT4G15020.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.090142108963413,"d":"0.09"},{"v":0,"d":"0.00"},null,"X"]
["g26105.t1","0006508:0051301","0004222:0005524:0008568:0008270",16021,"proteolysis:cell division","metalloendopeptidase activity:ATP binding:microtubule-severing ATPase activity:zinc ion binding","integral to membrane","ARATHwo_AT5G58870.1","encodes an FtsH protease that is localized to the chloroplast","sp|Q6H6R9|FTSH7_ORYSJ","ATP-dependent zinc metalloprotease FTSH 7, chloroplastic","gi|302764360|ref|XP_002965601.1|",null,null,"x","x",{"v":5.7571326001592,"d":"5.76"},{"v":5.01689923441549,"d":"5.02"},{"v":12.4777002131751,"d":"12.48"},{"v":18.2194384641493,"d":"18.22"}]
["g26123.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|O92815|POL_WDSV","Gag-Pol polyprotein","gi|21672035|gb|AAM74397.1|AC119149_12",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.359600059520185,"d":"0.36"},{"v":1.43169611574004,"d":"1.43"},{"v":0.66504598324355,"d":"0.67"},null,"X"]
["g26139.t1",{"$nulls":15},{"v":0.120476061770911,"d":"0.12"},{"v":0.486449702620288,"d":"0.49"},{"v":1.61796437537071,"d":"1.62"},{"v":0.495641691638472,"d":"0.50"},"X",null,"X"]
["g26159.t1",{"$nulls":6},"ARATHwo_AT5G57460.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to 166 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|685373891|ref|XP_009120265.1|",{"$nulls":4},{"v":16.0095839185622,"d":"16.01"},{"v":26.4210918489507,"d":"26.42"},{"v":17.4390998237517,"d":"17.44"},{"v":25.3221862847824,"d":"25.32"}]
["g25758.t2"]
["g25775.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0230974796069198,"d":"0.02"},{"v":0.0310726261598069,"d":"0.03"},{"v":0.158868864116641,"d":"0.16"},{"v":0.140441236155969,"d":"0.14"},"X"]
["g25793.t1",{"$nulls":10},"gi|516215077|ref|WP_017619040.1|",null,"x",null,"x",{"v":3.77824211658357,"d":"3.78"},{"v":0.543632627782915,"d":"0.54"},{"v":0.153327544224113,"d":"0.15"},{"v":2.89561119810754,"d":"2.90"}]
["g25810.t1",{"$nulls":10},"gi|497990872|ref|WP_010305028.1|"]
["g25827.t1"]
["g25851.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.530066038301682,"d":"0.53"},{"v":2.40616849470206,"d":"2.41"},{"v":0.768316776595662,"d":"0.77"},"X",null,"X"]
["g25860.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":3},"sp|P23074|POL_SFV1","Pro-Pol polyprotein","gi|596224288|ref|XP_007224141.1|",{"$nulls":4},{"v":1.198489407998,"d":"1.20"},{"v":1.59579805352679,"d":"1.60"},{"v":1.40094773985735,"d":"1.40"},{"v":0.640276043220087,"d":"0.64"},null,"X"]
["g25878.t1",9451,"0016740:0051539","0016020:0005783","RNA modification","transferase activity:4 iron, 4 sulfur cluster binding","membrane:endoplasmic reticulum","ARATHwo_AT1G72090.1","Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, catalytic activity; INVOLVED IN: metabolic process, RNA modification; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), Aldolase-type TIM barrel (InterPro:IPR013785), Methylthiotransferase, conserved site (InterPro:IPR020612), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), MiaB-like tRNA modifying enzyme, archaeal-type (InterPro:IPR006466); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT4G36390.1); Has 15738 Blast hits to 15705 proteins in 2423 species: Archae - 403; Bacteria - 9758; Metazoa - 296; Fungi - 1; Plants - 135; Viruses - 0; Other Eukaryotes - 5145 (source: NCBI BLink).","sp|Q5VV42|CDKAL_HUMAN","Threonylcarbamoyladenosine tRNA methylthiotransferase","gi|747046348|ref|XP_011099009.1|",{"$nulls":9},"X"]
["g25891.t1",{"$nulls":8},"sp|Q0R5R2|POL_HTL32","Gag-Pro-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0757844605913987,"d":"0.08"},{"v":0.282825179173652,"d":"0.28"},{"v":0.138481747142855,"d":"0.14"},"X"]
["g25908.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|4544430|gb|AAD22339.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0683480433703206,"d":"0.07"},{"v":0.185707821233353,"d":"0.19"},{"v":0,"d":"0.00"},null,"X"]
["g25920.t1",{"$nulls":8},"sp|P10978|POLX_TOBAC","Retrovirus-related Pol polyprotein from transposon TNT 1-94",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.582051825017672,"d":"0.58"},{"v":0.172726123072528,"d":"0.17"},null,"X"]
["g25944.t1",{"$nulls":10},"gi|646722767|gb|KDR23651.1|",{"$nulls":4},{"v":0.139304123383876,"d":"0.14"},{"v":0.744658913507387,"d":"0.74"},{"v":4.0554063293989,"d":"4.06"},{"v":0.699377576824585,"d":"0.70"},null,"X"]
["g25962.t1",8152,16787,null,"metabolic process","hydrolase activity",null,"ARATHwo_AT5G60760.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45090.1); Has 1216 Blast hits to 969 proteins in 195 species: Archae - 93; Bacteria - 85; Metazoa - 220; Fungi - 67; Plants - 127; Viruses - 43; Other Eukaryotes - 581 (source: NCBI BLink).","sp|Q9FJH9|LPAH1_ARATH","P-loop NTPase domain-containing protein LPA1 homolog 1","gi|802551345|ref|XP_012064749.1|",{"$nulls":4},{"v":0.225947050448776,"d":"0.23"},{"v":3.64047280731858,"d":"3.64"},{"v":6.07088872914429,"d":"6.07"},{"v":16.1454410716202,"d":"16.15"}]
["g25978.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.332455605928984,"d":"0.33"},{"v":1.87662660035759,"d":"1.88"},{"v":0.660825269998756,"d":"0.66"},"X",null,"X"]
["g25995.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|374081772|dbj|BAL46523.1|",{"$nulls":4},{"v":0.018873742596531,"d":"0.02"},{"v":0.189850064112967,"d":"0.19"},{"v":1.83565785461897,"d":"1.84"},{"v":0.270228780029591,"d":"0.27"},"X"]
["g26010.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0481089993335113,"d":"0.05"},{"v":0.076584227578893,"d":"0.08"},{"v":0.171001171441269,"d":"0.17"}]
["g26030.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.435717004395409,"d":"0.44"},{"v":0,"d":"0.00"}]
["g26047.t1","0009423:0009073",3866,null,"chorismate biosynthetic process:aromatic amino acid family biosynthetic process","3-phosphoshikimate 1-carboxyvinyltransferase activity",null,"ARATHwo_AT2G45300.1","encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis","sp|P05466|AROA_ARATH","3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic","gi|168016496|ref|XP_001760785.1|",null,null,"x","x",{"v":6.04949023727078,"d":"6.05"},{"v":10.395487515865,"d":"10.40"},{"v":2.98882342642892,"d":"2.99"},{"v":1.52406667489185,"d":"1.52"}]
["g26162.t1",{"$nulls":15},{"v":0.0695012291875184,"d":"0.07"},{"v":0.404738040186879,"d":"0.40"},{"v":1.99639643213688,"d":"2.00"},{"v":0.363257151475968,"d":"0.36"},"X",null,"X"]
["g26178.t1",{"$nulls":6},"ARATHwo_AT3G22220.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 845 Blast hits to 775 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 835; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).",null,null,"gi|769794566|ref|XP_011628706.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0488617035578267,"d":"0.05"},{"v":0.0874865124709707,"d":"0.09"}]
["g26195.t1",{"$nulls":10},"gi|302792479|ref|XP_002978005.1|",null,null,"x","x",{"v":0.251620335283314,"d":"0.25"},{"v":3.49166980364837,"d":"3.49"},{"v":5.35529526350787,"d":"5.36"},{"v":6.26877689555205,"d":"6.27"}]
["g26210.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.226665337677699,"d":"0.23"},{"v":0,"d":"0.00"},{"v":2.06295459732374,"d":"2.06"}]
["g26226.t1"]
["g26243.t1",{"$nulls":13},"x","x",{"v":0.473624341385607,"d":"0.47"},{"v":0.470243714344949,"d":"0.47"},{"v":17.946329712602,"d":"17.95"},{"v":0.112000311894505,"d":"0.11"}]
["g26260.t1",{"$nulls":20},"X","X"]
["g26276.t1",null,null,"0009535:0010287",null,null,"chloroplast thylakoid membrane:plastoglobule","ARATHwo_AT3G10130.1","SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT5G20140.1); Has 1532 Blast hits to 1528 proteins in 169 species: Archae - 17; Bacteria - 184; Metazoa - 176; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).","sp|Q9SR77|HBPL1_ARATH","Heme-binding-like protein At3g10130, chloroplastic","gi|548858774|gb|ERN16512.1|",null,"x","x","x",{"v":19.168840191183,"d":"19.17"},{"v":4.2079010577328,"d":"4.21"},{"v":4.01808041667817,"d":"4.02"},{"v":0,"d":"0.00"}]
["g26293.t1",{"$nulls":6},"ARATHwo_AT1G56500.1","haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: metabolic process, cell redox homeostasis; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Low-density lipoprotein receptor, class B (YWTD) repeat (InterPro:IPR000033), Thioredoxin fold (InterPro:IPR012335), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Thioredoxin-like (InterPro:IPR017936), NHL repeat (InterPro:IPR001258), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT3G07060.1); Has 23445 Blast hits to 20574 proteins in 2565 species: Archae - 340; Bacteria - 17044; Metazoa - 1036; Fungi - 332; Plants - 721; Viruses - 3; Other Eukaryotes - 3969 (source: NCBI BLink).","sp|Q8BZW8|NHLC2_MOUSE","NHL repeat-containing protein 2","gi|593800560|ref|XP_007163317.1|",{"$nulls":4},{"v":12.5026839452084,"d":"12.50"},{"v":5.03550389407928,"d":"5.04"},{"v":4.29001077631344,"d":"4.29"},{"v":0.857164255233373,"d":"0.86"}]
["g26309.t1"]
["g26326.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.127497923306822,"d":"0.13"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g26342.t1",{"$nulls":6},"ARATHwo_AT1G01350.1","Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8GX84|C3H1_ARATH","Zinc finger CCCH domain-containing protein 1","gi|565495250|ref|XP_006305264.1|",{"$nulls":4},{"v":5.81627864222333,"d":"5.82"},{"v":2.8377633053178,"d":"2.84"},{"v":1.84461434120407,"d":"1.84"},{"v":2.36404288068878,"d":"2.36"}]
["g26357.t1","0044699:0043085","0008047:0016671","0005829:0048046","single-organism process:positive regulation of catalytic activity","enzyme activator activity:oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","cytosol:apoplast","ARATHwo_AT3G51030.1","encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.","sp|P29448|TRXH1_ARATH","Thioredoxin H1","gi|514725281|ref|XP_004955694.1|",null,"x",null,"x",{"v":96.2467291593429,"d":"96.25"},{"v":104.850934521124,"d":"104.85"},{"v":95.6713861623536,"d":"95.67"},{"v":32.2784865491393,"d":"32.28"}]
["g26366.t1",{"$nulls":10},"gi|643542896|ref|WP_025226285.1|"]
["g26392.t1",9058,"0004475:0008928",null,"biosynthetic process","mannose-1-phosphate guanylyltransferase activity:mannose-1-phosphate guanylyltransferase (GDP) activity",null,"ARATHwo_AT2G39770.1","Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis. Mutations in this gene confer hypersensitivity to NH4+.","sp|O22287|GMPP1_ARATH","Mannose-1-phosphate guanylyltransferase 1","gi|470143838|ref|XP_004307574.1|",null,null,"x","x",{"v":30.1232134915828,"d":"30.12"},{"v":152.605123282979,"d":"152.61"},{"v":23.7466606292315,"d":"23.75"},{"v":17.4496630104505,"d":"17.45"}]
["g26409.t1",{"$nulls":6},"ARATHwo_AT1G10560.1","Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.","sp|Q6PJ69|TRI65_HUMAN","Tripartite motif-containing protein 65","gi|658847962|ref|XP_008406485.1|",{"$nulls":4},{"v":0.00964320971571839,"d":"0.01"},{"v":0.515283722180046,"d":"0.52"},{"v":0.0903793628508026,"d":"0.09"},{"v":1.74543378319067,"d":"1.75"}]
["g69110.t1",{"$nulls":15},{"v":1.216413012575,"d":"1.22"},{"v":5.35892154726281,"d":"5.36"},{"v":22.9176955395834,"d":"22.92"},{"v":7.9194108576844,"d":"7.92"},"X",null,"X"]
["g26442.t1"]
["g26454.t1",{"$nulls":20},"X","X"]
["g26478.t1"]
["g26495.t1",{"$nulls":6},"ARATHwo_AT3G55600.1","Membrane fusion protein Use1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Use1 (InterPro:IPR019150); BEST Arabidopsis thaliana protein match is: Membrane fusion protein Use1 (TAIR:AT1G54110.1); Has 235 Blast hits to 235 proteins in 85 species: Archae - 1; Bacteria - 13; Metazoa - 90; Fungi - 42; Plants - 82; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).","sp|Q9NZ43|USE1_HUMAN","Vesicle transport protein USE1","gi|901801767|gb|KMZ61636.1|",null,null,"x","x",{"v":5.31728115955215,"d":"5.32"},{"v":5.40364444386302,"d":"5.40"},{"v":3.78925524607087,"d":"3.79"},{"v":6.81952148564059,"d":"6.82"}]
["g26496.t1",{"$nulls":8},"sp|P16088|POL_FIVPE","Pol polyprotein","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":2.08536364096408,"d":"2.09"},{"v":9.3575887301657,"d":"9.36"},{"v":3.6928650708471,"d":"3.69"},"X"]
["g26512.t2",{"$nulls":8},"sp|Q6CNS3|DDI1_KLULA","DNA damage-inducible protein 1","gi|752340007|gb|KIN99114.1|",{"$nulls":4},{"v":0.0311221317686527,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.0402530397233607,"d":"0.04"},{"v":0,"d":"0.00"}]
["g27740.t2","0007155:0045010:0043622:0009913:0010090:0006468:0048765:0071555","0004674:0005524",55028,"cell adhesion:actin nucleation:cortical microtubule organization:epidermal cell differentiation:trichome morphogenesis:protein phosphorylation:root hair cell differentiation:cell wall organization","protein serine/threonine kinase activity:ATP binding","cortical microtubule","ARATHwo_AT3G44200.1","Encodes AtNek5, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.Interacts physically with plant kinesins ARK1 and ARK2. Mutants show defects in root epidermal cell morphology, trichome branching and other epidermal cell abnormalities suggesting a rol e in epidermal cell differentiation. NEK6 co-localizes with cortical microtubules.","sp|Q94CU5|NEK5_ORYSJ","Serine/threonine-protein kinase Nek5","gi|902181655|gb|KNA09785.1|",null,null,"x","x",{"v":1.45420933043652,"d":"1.45"},{"v":11.5747398170016,"d":"11.57"},{"v":9.735123360136,"d":"9.74"},{"v":10.9368089044834,"d":"10.94"}]
["g27743.t1",6412,3735,5840,"translation","structural constituent of ribosome","ribosome","ARATHwo_AT1G48830.1","Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT3G02560.2); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 158; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).","sp|Q9ZNS1|RS7_AVIMR","40S ribosomal protein S7","gi|168018205|ref|XP_001761637.1|",null,"x","x","x",{"v":2959.44437155789,"d":"2959.44"},{"v":240.231357041826,"d":"240.23"},{"v":128.004164070206,"d":"128.00"},{"v":448.75007170224,"d":"448.75"}]
["g27760.t1","0009733:0009407:0006189","0004639:0005524",9570,"response to auxin stimulus:toxin catabolic process:'de novo' IMP biosynthetic process","phosphoribosylaminoimidazolesuccinocarboxamide synthase activity:ATP binding","chloroplast stroma","ARATHwo_AT3G21110.1","5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.","sp|P38025|PUR7_ARATH","Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic","gi|17978592|gb|AAL48317.1|",null,null,"x","x",{"v":8.41504103545702,"d":"8.42"},{"v":8.2113948895799,"d":"8.21"},{"v":3.67545360276945,"d":"3.68"},{"v":18.7514180125976,"d":"18.75"}]
["g28481.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.274653169979184,"d":"0.27"},{"v":0.122654436396468,"d":"0.12"},{"v":5.28585223085545,"d":"5.29"},null,"X","X"]
["g28498.t1",50794,null,null,"regulation of cellular process",null,null,"ARATHwo_AT1G78540.2","Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.",null,null,"gi|302769906|ref|XP_002968372.1|",null,null,"x","x",{"v":2.631478123012,"d":"2.63"},{"v":1.93623914062488,"d":"1.94"},{"v":6.86864483625989,"d":"6.87"},{"v":2.15908143451447,"d":"2.16"}]
["g28529.t1","0006470:0006914",8420,"0005737:0005634:0000775","protein dephosphorylation:autophagy","CTD phosphatase activity","cytoplasm:nucleus:chromosome, centromeric region","ARATHwo_AT5G11860.1","Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).","sp|Q5F3Z7|CTSL2_CHICK","CTD small phosphatase-like protein 2","gi|302812229|ref|XP_002987802.1|",null,null,"x","x",{"v":10.1008161638658,"d":"10.10"},{"v":19.7917752575773,"d":"19.79"},{"v":14.8262588412828,"d":"14.83"},{"v":3.40362910675714,"d":"3.40"}]
["g28534.t1",{"$nulls":6},"ARATHwo_AT1G31175.1","unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|697184706|ref|XP_009601371.1|",null,"x","x","x",{"v":7.78116792837871,"d":"7.78"},{"v":2.21084265594651,"d":"2.21"},{"v":0.87945546341544,"d":"0.88"},{"v":1.01927796604912,"d":"1.02"}]
["g28550.t1","0000394:0050826:0010227:0010050:0048825:0051301:0009086:0009640:0010564:0019915:0010182:0009933:0016567:0009845:0010228:0009737:0009909:0016568:0009616:0010162",5200,"0005737:0005856:0005634","RNA splicing, via endonucleolytic cleavage and ligation:response to freezing:floral organ abscission:vegetative phase change:cotyledon development:cell division:methionine biosynthetic process:photomorphogenesis:regulation of cell cycle process:lipid storage:sugar mediated signaling pathway:meristem structural organization:protein ubiquitination:seed germination:vegetative to reproductive phase transition of meristem:response to abscisic acid stimulus:regulation of flower development:chromatin modification:virus induced gene silencing:seed dormancy process","structural constituent of cytoskeleton","cytoplasm:cytoskeleton:nucleus","ARATHwo_AT3G60830.1","Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.","sp|Q8L4Y5|ARP7_ARATH","Actin-related protein 7","gi|168051703|ref|XP_001778293.1|",{"$nulls":4},{"v":1.88211988738524,"d":"1.88"},{"v":1.66029918481892,"d":"1.66"},{"v":1.05289022884713,"d":"1.05"},{"v":2.22551028861126,"d":"2.23"}]
["g28568.t1","0009909:0016570:0006397",3723,"0005829:0005634","regulation of flower development:histone modification:mRNA processing","RNA binding","cytosol:nucleus","ARATHwo_AT5G51660.1","cleavage and polyadenylation specificity factor 160 (CPSF160); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: mRNA cleavage, mRNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.2); Has 1568 Blast hits to 1022 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 654; Fungi - 429; Plants - 267; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).","sp|Q9FGR0|CPSF1_ARATH","Cleavage and polyadenylation specificity factor subunit 1","gi|729407023|ref|XP_010555627.1|",null,null,"x","x",{"v":1.46305736354738,"d":"1.46"},{"v":2.45973534512161,"d":"2.46"},{"v":1.50810472647351,"d":"1.51"},{"v":1.61787435476472,"d":"1.62"}]
["g28580.t1",{"$nulls":6},"ARATHwo_AT4G17330.1","gene of unknown function expressed in seedlings, flower buds and stems",null,null,"gi|302786406|ref|XP_002974974.1|",null,null,"x","x",{"v":5.25438364642704,"d":"5.25"},{"v":16.5263696087903,"d":"16.53"},{"v":14.6390472822767,"d":"14.64"},{"v":25.6119036694779,"d":"25.61"}]
["g27783.t1",{"$nulls":6},"ARATHwo_AT5G59980.2","Encodes a predicted protein subunit of RNases P/MRP that plays a role in female gametophyte development and male competence.",{"$nulls":5},"x","x",{"v":3.21033040218102,"d":"3.21"},{"v":2.13692934863063,"d":"2.14"},{"v":1.17621646247822,"d":"1.18"},{"v":3.43764216581548,"d":"3.44"}]
["g27802.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.231620452063909,"d":"0.23"},{"v":0.20969579728924,"d":"0.21"},{"v":0,"d":"0.00"}]
["g27819.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|646722767|gb|KDR23651.1|",{"$nulls":4},{"v":0.175631008908128,"d":"0.18"},{"v":0.0953075220080991,"d":"0.10"},{"v":0.521402734264117,"d":"0.52"},{"v":0.0728714230608963,"d":"0.07"},null,"X"]
["g27837.t1",{"$nulls":8},"sp|Q381V6|PIF4_TRYB2","ATP-dependent DNA helicase PIF4","gi|595464903|gb|EXX64911.1|",{"$nulls":4},{"v":0.125188529141845,"d":"0.13"},{"v":0.105972858783003,"d":"0.11"},{"v":2.54714369598228,"d":"2.55"},{"v":0.095323524668397,"d":"0.10"},null,"X"]
["g27853.t2"]
["g27870.t1",{"$nulls":6},"ARATHwo_AT5G31412.1","hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT1G43260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|593693396|ref|XP_007147219.1|",{"$nulls":4},{"v":0.196453548520911,"d":"0.20"},{"v":0.0281721053044217,"d":"0.03"},{"v":0.148140953836294,"d":"0.15"},{"v":0,"d":"0.00"}]
["g27893.t1",{"$nulls":6},"ARATHwo_AT1G31850.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G19120.2); Has 1070 Blast hits to 1059 proteins in 86 species: Archae - 5; Bacteria - 108; Metazoa - 0; Fungi - 3; Plants - 946; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).","sp|Q9C6S7|PMTK_ARATH","Probable methyltransferase PMT20","gi|168015997|ref|XP_001760536.1|",{"$nulls":4},{"v":16.1182453231468,"d":"16.12"},{"v":32.6452581820559,"d":"32.65"},{"v":19.464795804753,"d":"19.46"},{"v":29.8265113311258,"d":"29.83"}]
["g27903.t1",{"$nulls":10},"gi|475602468|gb|EMT25146.1|"]
["g27920.t1",{"$nulls":10},"gi|675892324|ref|XP_009031664.1|",{"$nulls":4},{"v":0.0710452964926506,"d":"0.07"},{"v":0.0862100419637218,"d":"0.09"},{"v":0.208735636829929,"d":"0.21"},{"v":0.0590822954888283,"d":"0.06"}]
["g27937.t1",{"$nulls":19},"X",null,"X"]
["g27954.t1",8152,null,null,"metabolic process",null,null,"ARATHwo_AT1G21840.1","Encodes a urease accessory protein which is essential for the activation of plant urease.","sp|Q0E3L5|UREF_ORYSJ","Urease accessory protein F","gi|669150404|ref|XP_008610764.1|",{"$nulls":4},{"v":1.76820505244293,"d":"1.77"},{"v":2.26456766409143,"d":"2.26"},{"v":2.90481468117193,"d":"2.90"},{"v":3.65302952527454,"d":"3.65"}]
["g27964.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|571443008|ref|XP_006575970.1|",{"$nulls":9},"X"]
["g27989.t1",{"$nulls":19},"X",null,"X"]
["g28006.t1",{"$nulls":19},"X",null,"X"]
["g28021.t1"]
["g28038.t1",{"$nulls":15},{"v":0.061164292257943,"d":"0.06"},{"v":0.0807415717992113,"d":"0.08"},{"v":1.09685554365537,"d":"1.10"},{"v":0,"d":"0.00"},"X",null,"X"]
["g28051.t2"]
["g28073.t1",8152,null,null,"metabolic process",null,null,"ARATHwo_AT5G48545.1","Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.","sp|P95937|YHIT_SULSO","Uncharacterized HIT-like protein SSO2163","gi|255585620|ref|XP_002533497.1|",null,null,"x","x",{"v":1.45779851757235,"d":"1.46"},{"v":3.13358986245055,"d":"3.13"},{"v":2.59592168952914,"d":"2.60"},{"v":6.87770548736579,"d":"6.88"}]
["g28090.t1",{"$nulls":6},"ARATHwo_AT1G77930.1","Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G36040.1); Has 19455 Blast hits to 19427 proteins in 3128 species: Archae - 161; Bacteria - 8834; Metazoa - 3140; Fungi - 1483; Plants - 1557; Viruses - 8; Other Eukaryotes - 4272 (source: NCBI BLink).",null,null,"gi|670420438|ref|XP_008651049.1|",null,"x","x","x",{"v":12.1712156464835,"d":"12.17"},{"v":3.78520351192138,"d":"3.79"},{"v":2.00416732086469,"d":"2.00"},{"v":1.01095555528708,"d":"1.01"}]
["g28598.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|147795669|emb|CAN69982.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.141309183699068,"d":"0.14"},{"v":0.531612391443935,"d":"0.53"},{"v":0.308638636653078,"d":"0.31"},"X"]
["g28614.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.113818735793007,"d":"0.11"},{"v":0.102103907116293,"d":"0.10"},"X",null,"X"]
["g28627.t1",8152,"0005525:0051536:0003824",null,"metabolic process","GTP binding:iron-sulfur cluster binding:catalytic activity",null,"ARATHwo_AT1G78010.1","tRNA modification GTPase, putative; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: small GTPase mediated signal transduction, tRNA modification; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), tRNA modification GTPase TrmE (InterPro:IPR004520), GTP-binding protein TrmE, N-terminal (InterPro:IPR018948), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G12080.1); Has 37224 Blast hits to 31482 proteins in 3092 species: Archae - 387; Bacteria - 27903; Metazoa - 467; Fungi - 287; Plants - 322; Viruses - 0; Other Eukaryotes - 7858 (source: NCBI BLink).","sp|A6Q4R8|DER_NITSB","GTPase Der","gi|873225321|emb|CEM24053.1|",null,null,"x","x"]
["g29322.t1",null,5488,null,null,"binding",{"$nulls":5},"gi|406696792|gb|EKD00067.1|",null,null,"x","x",{"v":2.99682936765598,"d":"3.00"},{"v":2.73200486554807,"d":"2.73"},{"v":1.91211596243435,"d":"1.91"},{"v":3.49984987472896,"d":"3.50"}]
["g29338.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.075944919760408,"d":"0.08"},{"v":0.298665001396399,"d":"0.30"},{"v":0.127760733711,"d":"0.13"}]
["g29356.t1",6259,"0005488:0003824",null,"DNA metabolic process","binding:catalytic activity",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|568882001|ref|XP_006493831.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.133513317354689,"d":"0.13"},{"v":1.8782514878085,"d":"1.88"},{"v":0.196789679312602,"d":"0.20"},"X"]
["g29373.t1",{"$nulls":10},"gi|553188824|ref|XP_005854872.1|",null,null,"x","x",{"v":0.115054002942011,"d":"0.12"},{"v":3.24518089800853,"d":"3.25"},{"v":0.506287513128229,"d":"0.51"},{"v":3.2392649139375,"d":"3.24"}]
["g29389.t1",6259,"0046872:0003824",null,"DNA metabolic process","metal ion binding:catalytic activity",{"$nulls":5},"gi|769799310|ref|XP_006854885.2|",{"$nulls":4},{"v":0.0231296296563081,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.0554216085583444,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g29407.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.251562440708473,"d":"0.25"},{"v":0,"d":"0.00"},"X",null,"X"]
["g28649.t1",{"$nulls":6},"ARATHwo_AT1G69710.1","Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 25088 Blast hits to 10396 proteins in 690 species: Archae - 87; Bacteria - 2712; Metazoa - 10178; Fungi - 1575; Plants - 3087; Viruses - 5; Other Eukaryotes - 7444 (source: NCBI BLink).",{"$nulls":11},"X"]
["g69523.t1",{"$nulls":13},"x","x",{"v":0.0371388929154049,"d":"0.04"},{"v":3.08510869127855,"d":"3.09"},{"v":2.0729578423812,"d":"2.07"},{"v":2.08929847750246,"d":"2.09"}]
["g28681.t1",null,16787,null,null,"hydrolase activity",null,"ARATHwo_AT2G45040.1","Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT4G16640.1); Has 2623 Blast hits to 2423 proteins in 190 species: Archae - 2; Bacteria - 81; Metazoa - 2217; Fungi - 5; Plants - 182; Viruses - 44; Other Eukaryotes - 92 (source: NCBI BLink).","sp|Q8GWW6|4MMP_ARATH","Metalloendoproteinase 4-MMP","gi|703151748|ref|XP_010110202.1|",null,null,"x","x",{"v":2.69270285607102,"d":"2.69"},{"v":3.97532322053927,"d":"3.98"},{"v":1.9122667152138,"d":"1.91"},{"v":2.51888706349659,"d":"2.52"}]
["g28697.t2",8152,16746,44444,"metabolic process","transferase activity, transferring acyl groups","cytoplasmic part","ARATHwo_AT3G25860.1","Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect.","sp|Q8BKZ9|ODPX_MOUSE","Pyruvate dehydrogenase protein X component, mitochondrial","gi|46850167|gb|AAT02515.1|",null,null,"x","x",{"v":17.1793536898207,"d":"17.18"},{"v":20.5847533585151,"d":"20.58"},{"v":4.88336568476534,"d":"4.88"},{"v":11.3154774575037,"d":"11.32"}]
["g28705.t1",{"$nulls":6},"ARATHwo_AT4G15020.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|595484032|gb|EXX71174.1|",{"$nulls":9},"X"]
["g28716.t1",{"$nulls":8},"sp|Q0R5R2|POL_HTL32","Gag-Pro-Pol polyprotein","gi|922571445|ref|XP_013614061.1|",{"$nulls":4},{"v":1.49875606961372,"d":"1.50"},{"v":9.51268030516631,"d":"9.51"},{"v":4.82975119890173,"d":"4.83"},{"v":17.8876631170556,"d":"17.89"},null,"X"]
["g28733.t1"]
["g28751.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.131026717320416,"d":"0.13"},{"v":0.443973377784948,"d":"0.44"},{"v":0,"d":"0.00"},"X",null,"X"]
["g28767.t1"]
["g28795.t1",{"$nulls":8},"sp|O07921|CHIS_BACSU","Chitosanase","gi|552816485|ref|XP_005844697.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.290236679915684,"d":"0.29"}]
["g28803.t1",{"$nulls":8},"sp|B5BUZ8|PF13_CHLRE","Protein kintoun","gi|255077860|ref|XP_002502510.1|",null,null,"x","x",{"v":0.967804540538291,"d":"0.97"},{"v":4.11671104853169,"d":"4.12"},{"v":10.5540086245853,"d":"10.55"},{"v":6.7805160566307,"d":"6.78"}]
["g28819.t1",null,null,9535,null,null,"chloroplast thylakoid membrane","ARATHwo_AT3G15110.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082 (InterPro:IPR021434); Has 77 Blast hits to 77 proteins in 38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).",null,null,"gi|168035549|ref|XP_001770272.1|",null,null,"x","x",{"v":16.7365473400954,"d":"16.74"},{"v":9.79658681566134,"d":"9.80"},{"v":10.1749112653718,"d":"10.17"},{"v":0.589123437872347,"d":"0.59"}]
["g28834.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0755645547264813,"d":"0.08"},{"v":0.112198035103781,"d":"0.11"}]
["g28851.t1",{"$nulls":15},{"v":0.0619625509593733,"d":"0.06"},{"v":0.478436134566881,"d":"0.48"},{"v":2.25753950746478,"d":"2.26"},{"v":0.140050310621819,"d":"0.14"},"X",null,"X"]
["g28876.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.18435083637955,"d":"1.18"},{"v":0,"d":"0.00"}]
["g28885.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.183051884163864,"d":"0.18"},{"v":0.194014039185781,"d":"0.19"},"X",null,"X"]
["g28902.t1",{"$nulls":8},"sp|Q0R5R2|POL_HTL32","Gag-Pro-Pol polyprotein","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":4.79944951784789,"d":"4.80"},{"v":4.36285926742441,"d":"4.36"},{"v":3.78253802788281,"d":"3.78"},{"v":2.33402961347911,"d":"2.33"},null,"X"]
["g28919.t1","0090502:0016556:0009902:1901259:0010027:0010239:0042793","0005488:0004521",9507,"RNA phosphodiester bond hydrolysis, endonucleolytic:mRNA modification:chloroplast relocation:chloroplast rRNA processing:thylakoid membrane organization:chloroplast mRNA processing:transcription from plastid promoter","binding:endoribonuclease activity","chloroplast","ARATHwo_AT2G04270.5","Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.","sp|F4IV66|RNE_ARATH","Ribonuclease E/G-like protein, chloroplastic","gi|703068841|ref|XP_010088345.1|",null,null,"x","x",{"v":1.81711949554851,"d":"1.82"},{"v":1.85772980925425,"d":"1.86"},{"v":4.91624733329815,"d":"4.92"},{"v":1.8958320054991,"d":"1.90"},null,"X"]
["g29264.t1",{"$nulls":13},"x","x",{"v":0.791587556545055,"d":"0.79"},{"v":0.212371729337716,"d":"0.21"},{"v":0.444794108708934,"d":"0.44"},{"v":0,"d":"0.00"}]
["g29276.t1","0046777:0055114:0016117:0052889:0010155","0052886:0016166:0016705:0052887","0009941:0009509:0009534","protein autophosphorylation:oxidation-reduction process:carotenoid biosynthetic process:9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene:regulation of proton transport","9,9'-dicis-carotene:quinone oxidoreductase activity:phytoene dehydrogenase activity:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen:7,9,9'-tricis-neurosporene:quinone oxidoreductase activity","chloroplast envelope:chromoplast:chloroplast thylakoid","ARATHwo_AT4G14210.1","Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.","sp|P26294|PDS_SYNE7","15-cis-phytoene desaturase","gi|159465297|ref|XP_001690859.1|",{"$nulls":4},{"v":42.172915752296,"d":"42.17"},{"v":24.7398086127165,"d":"24.74"},{"v":12.5402317354471,"d":"12.54"},{"v":0.976910193101964,"d":"0.98"},null,"X"]
["g29299.t1"]
["g29416.t1"]
["g29432.t1",8152,16788,16020,"metabolic process","hydrolase activity, acting on ester bonds","membrane","ARATHwo_AT4G23000.1","Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT4G11800.1); Has 177 Blast hits to 132 proteins in 49 species: Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).",null,null,"gi|168039409|ref|XP_001772190.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0.152492322559985,"d":"0.15"},{"v":5.38371730109751,"d":"5.38"},{"v":0.347907161236353,"d":"0.35"}]
["g29449.t1","0044238:0044260",16301,null,"primary metabolic process:cellular macromolecule metabolic process","kinase activity",null,"ARATHwo_AT1G51880.1","root hair specific 6 (RHS6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G51860.1); Has 126936 Blast hits to 118973 proteins in 4393 species: Archae - 105; Bacteria - 13375; Metazoa - 43816; Fungi - 9840; Plants - 42085; Viruses - 436; Other Eukaryotes - 17279 (source: NCBI BLink).","sp|Q9FZB1|Y5188_ARATH","Probable LRR receptor-like serine/threonine-protein kinase At1g51880","gi|727425421|ref|XP_010455342.1|",null,null,"x","x",{"v":3.01196612413423,"d":"3.01"},{"v":5.12417220523286,"d":"5.12"},{"v":2.85757254119433,"d":"2.86"},{"v":9.33704463264211,"d":"9.34"}]
["g29833.t1",{"$nulls":6},"ARATHwo_AT1G52920.1","Encodes a plasma membrane?localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses.","sp|F4IEM5|GCR2_ARATH","LanC-like protein GCR2","gi|116787375|gb|ABK24484.1|",null,null,"x","x",{"v":14.029075614106,"d":"14.03"},{"v":42.5686401729726,"d":"42.57"},{"v":12.9324555036732,"d":"12.93"},{"v":21.4627014231933,"d":"21.46"}]
["g29854.t1",{"$nulls":6},"ARATHwo_AT3G14110.3","Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.","sp|Q940U6|FLU_ARATH","Protein FLUORESCENT IN BLUE LIGHT, chloroplastic",{"$nulls":3},"x","x",{"v":3.65244816581831,"d":"3.65"},{"v":4.80840461162091,"d":"4.81"},{"v":2.80294558380405,"d":"2.80"},{"v":4.50475994368325,"d":"4.50"}]
["g29868.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.261883391916501,"d":"0.26"},{"v":0.615377989257905,"d":"0.62"},{"v":0.221609137595762,"d":"0.22"},"X"]
["g29884.t1",{"$nulls":12},"x","x","x",{"v":105.321054879389,"d":"105.32"},{"v":67.2571516261995,"d":"67.26"},{"v":29.6079194039209,"d":"29.61"},{"v":25.0808605950682,"d":"25.08"}]
["g29902.t1","0006266:0034645:0006281","0003909:0000166",null,"DNA ligation:cellular macromolecule biosynthetic process:DNA repair","DNA ligase activity:nucleotide binding",null,"ARATHwo_AT1G66730.1","Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.","sp|Q42572|DNLI1_ARATH","DNA ligase 1","gi|923666336|ref|XP_013649173.1|",{"$nulls":4},{"v":0.186675414341,"d":"0.19"},{"v":0.313373214523808,"d":"0.31"},{"v":0.33434689635087,"d":"0.33"},{"v":12.0828095830248,"d":"12.08"}]
["g29916.t2","0044763:0006974:0006259:0048856:0034645:0044710:0016043:0044767","0016779:0016874:0046872:0003677",44424,"single-organism cellular process:response to DNA damage stimulus:DNA metabolic process:anatomical structure development:cellular macromolecule biosynthetic process:single-organism metabolic process:cellular component organization:single-organism developmental process","nucleotidyltransferase activity:ligase activity:metal ion binding:DNA binding","intracellular part",{"$nulls":4},"gi|168056469|ref|XP_001780242.1|",null,null,"x","x",{"v":0.0547909022667171,"d":"0.05"},{"v":0.967607194987672,"d":"0.97"},{"v":1.46620480523145,"d":"1.47"},{"v":4.29308100948351,"d":"4.29"}]
["g29455.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.913268665421526,"d":"0.91"},{"v":0,"d":"0.00"}]
["g29466.t1",{"$nulls":15},{"v":1.18966685858306,"d":"1.19"},{"v":0.289723802178229,"d":"0.29"},{"v":0.492979576945361,"d":"0.49"},{"v":0.403658974835411,"d":"0.40"}]
["g29483.t1",{"$nulls":6},"ARATHwo_AT4G31200.2","SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), SWAP/Surp (InterPro:IPR000061), RNA polymerase II, large subunit, CTD (InterPro:IPR006569); Has 15613 Blast hits to 10676 proteins in 664 species: Archae - 6; Bacteria - 799; Metazoa - 6418; Fungi - 3065; Plants - 3018; Viruses - 214; Other Eukaryotes - 2093 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|802623032|ref|XP_012076276.1|",{"$nulls":4},{"v":2.36638180079991,"d":"2.37"},{"v":1.59492146335965,"d":"1.59"},{"v":3.84941476691678,"d":"3.85"},{"v":0.681254808279865,"d":"0.68"}]
["g29500.t2",16310,"0004672:0000166",null,"phosphorylation","protein kinase activity:nucleotide binding",null,"ARATHwo_AT3G01090.2","encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase","sp|Q38997|KIN10_ARATH","SNF1-related protein kinase catalytic subunit alpha KIN10","gi|302835097|ref|XP_002949110.1|",null,null,"x","x",{"v":1.40984657471723,"d":"1.41"},{"v":23.7785749452744,"d":"23.78"},{"v":13.9455043714264,"d":"13.95"},{"v":18.3843701803442,"d":"18.38"}]
["g29516.t1",{"$nulls":19},"X",null,"X"]
["g29522.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0273343206345601,"d":"0.03"},{"v":0.061853537552159,"d":"0.06"},{"v":0.045349157647106,"d":"0.05"},null,"X"]
["g29551.t1","0006351:0000079",null,16591,"transcription, DNA-dependent:regulation of cyclin-dependent protein serine/threonine kinase activity",null,"DNA-directed RNA polymerase II, holoenzyme","ARATHwo_AT5G27620.1","core cell cycle genes","sp|Q10D80|CCH11_ORYSJ","Cyclin-H1-1","gi|302804568|ref|XP_002984036.1|",null,null,"x","x",{"v":7.05827453745926,"d":"7.06"},{"v":2.07299770518011,"d":"2.07"},{"v":1.96812725093327,"d":"1.97"},{"v":4.8951163187849,"d":"4.90"}]
["g29565.t1",{"$nulls":8},"sp|Q9Q720|POL_HV1V9","Gag-Pol polyprotein","gi|215448628|gb|EEB88753.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.173036127747887,"d":"0.17"},{"v":0,"d":"0.00"},"X"]
["g29583.t1"]
["g29598.t1",{"$nulls":8},"sp|P0C6U4|R1A_CVHN2","Replicase polyprotein 1a",{"$nulls":5},{"v":0.0699139043868575,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0.179556132601962,"d":"0.18"},{"v":0.132006598783958,"d":"0.13"},null,"X"]
["g29607.t1",{"$nulls":8},"sp|Q76634|POL_HV2UC","Gag-Pol polyprotein","gi|923869348|ref|XP_013709097.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.055282250926834,"d":"0.06"},{"v":0.328001037225154,"d":"0.33"},{"v":0.620860780654155,"d":"0.62"},"X"]
["g29634.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0389623659576397,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.394461597382542,"d":"0.39"}]
["g29651.t1",{"$nulls":6},"ARATHwo_AT3G50370.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink).",{"$nulls":7},{"v":0.0694754398298641,"d":"0.07"},{"v":0.221524039676482,"d":"0.22"},{"v":0.0880439986312013,"d":"0.09"},{"v":0,"d":"0.00"},"X"]
["g29669.t1",{"$nulls":15},{"v":1.35212987493981,"d":"1.35"},{"v":1.0335496227828,"d":"1.03"},{"v":1.10414680258298,"d":"1.10"},{"v":0.673505826369406,"d":"0.67"}]
["g29686.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.160801485656141,"d":"0.16"},{"v":0,"d":"0.00"}]
["g29698.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923732912|ref|XP_013668695.1|",{"$nulls":4},{"v":0.0825836306410834,"d":"0.08"},{"v":1.31973753185548,"d":"1.32"},{"v":5.51345551762607,"d":"5.51"},{"v":3.00185508308426,"d":"3.00"},null,"X"]
["g29722.t1","0048573:0006626:0006499",null,80008,"photoperiodism, flowering:protein targeting to mitochondrion:N-terminal protein myristoylation",null,"Cul4-RING ubiquitin ligase complex","ARATHwo_AT2G20330.1","Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 32306 Blast hits to 19564 proteins in 654 species: Archae - 48; Bacteria - 6195; Metazoa - 11628; Fungi - 6530; Plants - 3814; Viruses - 23; Other Eukaryotes - 4068 (source: NCBI BLink).","sp|Q5EB92|WDR70_RAT","WD repeat-containing protein 70","gi|116787371|gb|ABK24482.1|",null,null,"x","x",{"v":2.63520302414065,"d":"2.64"},{"v":3.49237028839569,"d":"3.49"},{"v":4.35267373390262,"d":"4.35"},{"v":10.7056589506671,"d":"10.71"}]
["g29737.t1",71704,16787,null,"organic substance metabolic process","hydrolase activity",null,"ARATHwo_AT3G02720.1","Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C56, PfpI (InterPro:IPR006286), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G38860.2); Has 9235 Blast hits to 5440 proteins in 1716 species: Archae - 384; Bacteria - 8047; Metazoa - 84; Fungi - 88; Plants - 239; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).","sp|Q9M8R4|DJ1D_ARATH","Protein DJ-1 homolog D","gi|168039141|ref|XP_001772057.1|",null,"x","x","x",{"v":17.5133639108347,"d":"17.51"},{"v":19.1542052149828,"d":"19.15"},{"v":6.14175293541134,"d":"6.14"},{"v":2.06409413121604,"d":"2.06"}]
["g29754.t1"]
["g29755.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.153502978242699,"d":"0.15"},{"v":0.206673629918514,"d":"0.21"},{"v":0,"d":"0.00"},"X",null,"X"]
["g29772.t1",{"$nulls":13},"x","x",{"v":9.69251816651134,"d":"9.69"},{"v":1.2606552538701,"d":"1.26"},{"v":0.341804608146895,"d":"0.34"},{"v":1.38129591071542,"d":"1.38"}]
["g29788.t1"]
["g29802.t1",{"$nulls":19},"X",null,"X"]
["g29819.t1",{"$nulls":19},"X",null,"X"]
["g29953.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.079989032789951,"d":"0.08"},{"v":0.1545875763917,"d":"0.15"},null,"X","X"]
["g29968.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0496150909059601,"d":"0.05"},{"v":0.0735208616905944,"d":"0.07"},{"v":0.148911356805363,"d":"0.15"},null,"X"]
["g30291.t1"]
["g30307.t1","0042176:0050790",30234,502,"regulation of protein catabolic process:regulation of catalytic activity","enzyme regulator activity","proteasome complex","ARATHwo_AT4G08140.1","BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit S2 1A (TAIR:AT2G20580.1); Has 381 Blast hits to 381 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 132; Plants - 58; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).","sp|Q6FPV6|RPN1_CANGA","26S proteasome regulatory subunit RPN1","gi|168065387|ref|XP_001784634.1|",null,null,"x","x",{"v":20.4634659391902,"d":"20.46"},{"v":30.8977331693721,"d":"30.90"},{"v":21.5442455119933,"d":"21.54"},{"v":22.4336085619516,"d":"22.43"}]
["g30324.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|55168131|gb|AAV43998.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.036464833846338,"d":"0.04"},{"v":0.284730154510624,"d":"0.28"},{"v":0.213000156008294,"d":"0.21"},"X"]
["g30342.t1","0006457:0006259:0009108:0006633:0034654:0000413","0003989:0000166:0016740:0003755","0009941:0009317:0009528","protein folding:DNA metabolic process:coenzyme biosynthetic process:fatty acid biosynthetic process:nucleobase-containing compound biosynthetic process:protein peptidyl-prolyl isomerization","acetyl-CoA carboxylase activity:nucleotide binding:transferase activity:peptidyl-prolyl cis-trans isomerase activity","chloroplast envelope:acetyl-CoA carboxylase complex:plastid inner membrane","ARATHwo_AT2G38040.1","encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesis","sp|Q9LD43|ACCA_ARATH","Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic","gi|168051530|ref|XP_001778207.1|",null,"x","x","x",{"v":55.6138840176939,"d":"55.61"},{"v":62.3173664262492,"d":"62.32"},{"v":31.956340208012,"d":"31.96"},{"v":3.29900505286795,"d":"3.30"}]
["g30358.t1",{"$nulls":13},"x","x",{"v":0.117988447585356,"d":"0.12"},{"v":0.607847280248234,"d":"0.61"},{"v":41.5987783979216,"d":"41.60"},{"v":0.350514586376918,"d":"0.35"}]
["g30379.t1",{"$nulls":15},{"v":0.0671151738918157,"d":"0.07"},{"v":0.377840668753035,"d":"0.38"},{"v":2.20694286827533,"d":"2.21"},{"v":0.983937842637835,"d":"0.98"},"X",null,"X"]
["g30392.t2",null,5488,null,null,"binding",{"$nulls":3},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|596229119|ref|XP_007224256.1|",{"$nulls":4},{"v":0.522881682733642,"d":"0.52"},{"v":1.2855062606222,"d":"1.29"},{"v":1.06547023146297,"d":"1.07"},{"v":0.760527869077105,"d":"0.76"}]
["g29995.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q8K259|GIN1_MOUSE","Gypsy retrotransposon integrase-like protein 1","gi|923654746|ref|XP_013645649.1|",{"$nulls":9},"X"]
["g30013.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.143937785369323,"d":"0.14"},{"v":0.632862647993596,"d":"0.63"},{"v":0,"d":"0.00"},"X",null,"X"]
["g30030.t1","0044765:0044763:0016192",null,null,"single-organism transport:single-organism cellular process:vesicle-mediated transport",null,null,"ARATHwo_AT1G03900.1","member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.","sp|Q681Q7|Y1390_ARATH","Uncharacterized protein At1g03900","gi|672123672|ref|XP_008785206.1|",null,null,"x","x",{"v":32.8311695560744,"d":"32.83"},{"v":28.4429964361608,"d":"28.44"},{"v":19.7203286446326,"d":"19.72"},{"v":11.2531391920409,"d":"11.25"}]
["g30055.t1",null,null,5622,null,null,"intracellular","ARATHwo_AT1G07830.1","ribosomal protein L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, mitochondrial ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L47, mitochondrial (InterPro:IPR010729), Ribosomal protein L29 (InterPro:IPR001854); Has 365 Blast hits to 365 proteins in 201 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 146; Plants - 47; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).","sp|P87232|RM04_SCHPO","54S ribosomal protein L4, mitochondrial","gi|168022977|ref|XP_001764015.1|",null,null,"x","x",{"v":29.3567936599786,"d":"29.36"},{"v":14.1983673018319,"d":"14.20"},{"v":4.31040750105685,"d":"4.31"},{"v":16.1529030940076,"d":"16.15"}]
["g30065.t1",44765,"0022857:0016887",null,"single-organism transport","transmembrane transporter activity:ATPase activity",null,"ARATHwo_AT3G13080.1","encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.","sp|O15439|MRP4_HUMAN","Multidrug resistance-associated protein 4","gi|755965009|ref|XP_011305028.1|",null,null,"x","x",{"v":2.57162975684366,"d":"2.57"},{"v":0.1895874898682,"d":"0.19"},{"v":1.36123621844902,"d":"1.36"},{"v":0,"d":"0.00"}]
["g30082.t1",{"$nulls":19},"X",null,"X"]
["g30098.t1","0009653:0009888:1901701:0009617:0048583:0048513:0006970:0071702:0070727:0016043:0048366:0009873",5215,16020,"anatomical structure morphogenesis:tissue development:cellular response to oxygen-containing compound:response to bacterium:regulation of response to stimulus:organ development:response to osmotic stress:organic substance transport:cellular macromolecule localization:cellular component organization:leaf development:ethylene mediated signaling pathway","transporter activity","membrane","ARATHwo_AT5G03280.1","Involved in ethylene signal transduction. Acts downstream of CTR1. Positively regulates ORE1 and negatively regulates mir164A,B,C to regulate leaf senescence. A maternally expressed imprinted gene. Mutations in ein2 block ethylene stimulation of flavonol synthesis.","sp|Q8UEM1|MNTH_AGRFC","Divalent metal cation transporter MntH","gi|159485522|ref|XP_001700793.1|",null,null,"x","x",{"v":0.95800433938471,"d":"0.96"},{"v":1.29466449110672,"d":"1.29"},{"v":1.62944344633606,"d":"1.63"},{"v":1.3202767436618,"d":"1.32"}]
["g30116.t1","0055114:0019288:0050992","0046872:0051538:0046429:0051745",9570,"oxidation-reduction process:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:dimethylallyl diphosphate biosynthetic process","metal ion binding:3 iron, 4 sulfur cluster binding:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity:4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity","chloroplast stroma","ARATHwo_AT4G34350.1","Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling.","sp|Q6AVG6|ISPH_ORYSJ","4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic","gi|113170997|gb|ABI30631.1|",{"$nulls":4},{"v":178.562584050792,"d":"178.56"},{"v":67.2128939395997,"d":"67.21"},{"v":76.7467516766103,"d":"76.75"},{"v":7.51978973923756,"d":"7.52"},null,"X"]
["g30127.t1","0016192:0046907:0015031",null,"0030117:0030663","vesicle-mediated transport:intracellular transport:protein transport",null,"membrane coat:COPI-coated vesicle membrane","ARATHwo_AT5G05010.1","clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q93Y22|COPD_ARATH","Coatomer subunit delta","gi|168005544|ref|XP_001755470.1|",{"$nulls":4},{"v":35.5837553041487,"d":"35.58"},{"v":31.3930551982871,"d":"31.39"},{"v":13.2640138775328,"d":"13.26"},{"v":27.3416473313717,"d":"27.34"}]
["g30150.t1",{"$nulls":15},{"v":0.154851281825013,"d":"0.15"},{"v":0,"d":"0.00"},{"v":4.53641354186899,"d":"4.54"},{"v":1.03135880385834,"d":"1.03"},null,"X","X"]
["g30166.t1"]
["g30182.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.5899278311585,"d":"0.59"},{"v":0,"d":"0.00"}]
["g30199.t1",9987,16301,null,"cellular process","kinase activity",null,"ARATHwo_AT1G68690.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q9SX31|PERK9_ARATH","Proline-rich receptor-like protein kinase PERK9","gi|548832638|gb|ERM95419.1|",{"$nulls":4},{"v":9.31703468559961,"d":"9.32"},{"v":45.1170247244165,"d":"45.12"},{"v":10.5571953171851,"d":"10.56"},{"v":45.481223680624,"d":"45.48"}]
["g30214.t1",null,46872,null,null,"metal ion binding",null,"ARATHwo_AT2G20280.1","Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 6263 Blast hits to 4194 proteins in 354 species: Archae - 14; Bacteria - 176; Metazoa - 2274; Fungi - 740; Plants - 301; Viruses - 209; Other Eukaryotes - 2549 (source: NCBI BLink).","sp|Q0JHZ2|C3H11_ORYSJ","Zinc finger CCCH domain-containing protein 11","gi|697187013|ref|XP_009602547.1|",null,"x","x","x",{"v":58.8502314343169,"d":"58.85"},{"v":36.373534176164,"d":"36.37"},{"v":24.3559397094333,"d":"24.36"},{"v":39.2854343493787,"d":"39.29"}]
["g30235.t1",{"$nulls":13},"x","x",{"v":0.691799037364014,"d":"0.69"},{"v":0.886509305142376,"d":"0.89"},{"v":276.33738829634,"d":"276.34"},{"v":0.305962710335712,"d":"0.31"}]
["g30249.t1","0006259:0034645","0003676:0016779",null,"DNA metabolic process:cellular macromolecule biosynthetic process","nucleic acid binding:nucleotidyltransferase activity",{"$nulls":3},"sp|P74750|DPO3A_SYNY3","DNA polymerase III subunit alpha","gi|505002864|ref|WP_015189966.1|",null,null,"x","x",{"v":3.13702394301906,"d":"3.14"},{"v":2.88918106703028,"d":"2.89"},{"v":2.35735317880019,"d":"2.36"},{"v":6.16510538867113,"d":"6.17"}]
["g30265.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G01540.2","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G01330.1); Has 118949 Blast hits to 117566 proteins in 4483 species: Archae - 118; Bacteria - 14365; Metazoa - 43793; Fungi - 9783; Plants - 32976; Viruses - 455; Other Eukaryotes - 17459 (source: NCBI BLink).","sp|Q3EDL4|Y1154_ARATH","Probable serine/threonine-protein kinase At1g01540","gi|302769257|ref|XP_002968048.1|",{"$nulls":4},{"v":0.836825074940508,"d":"0.84"},{"v":4.93337857682488,"d":"4.93"},{"v":2.49632029931496,"d":"2.50"},{"v":2.2311444649836,"d":"2.23"}]
["g30283.t1",6996,null,"0043231:0044444:0016020","organelle organization",null,"intracellular membrane-bounded organelle:cytoplasmic part:membrane","ARATHwo_AT3G57090.1","Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.","sp|Q9M1J1|FIS1A_ARATH","Mitochondrial fission 1 protein A","gi|168023842|ref|XP_001764446.1|",null,null,"x","x",{"v":19.5266051091297,"d":"19.53"},{"v":16.5323313648116,"d":"16.53"},{"v":10.8374328243276,"d":"10.84"},{"v":10.3676164693211,"d":"10.37"}]
["g30407.t1"]
["g30424.t1",{"$nulls":13},"x","x",{"v":6.796906269476,"d":"6.80"},{"v":3.17036502362654,"d":"3.17"},{"v":4.8813130221475,"d":"4.88"},{"v":9.10146487340551,"d":"9.10"}]
["g30774.t1"]
["g30791.t1",{"$nulls":13},"x","x",{"v":0.944998905824872,"d":"0.94"},{"v":0.0888280966053063,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g30808.t1",{"$nulls":6},"ARATHwo_AT1G43260.1","hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|694396688|ref|XP_009373617.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.118278762552925,"d":"0.12"},{"v":0,"d":"0.00"}]
["g30823.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q00962|POL_CAMVN","Enzymatic polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.43494501876659,"d":"0.43"},{"v":1.20224281261062,"d":"1.20"},{"v":0.114478232746594,"d":"0.11"},"X"]
["g30828.t1",{"$nulls":15},{"v":0.0450718093995628,"d":"0.05"},{"v":0.508962712547524,"d":"0.51"},{"v":2.20653550526754,"d":"2.21"},{"v":1.81301305163745,"d":"1.81"},"X",null,"X"]
["g30428.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.330196529339067,"d":"0.33"},"X",null,"X"]
["g30445.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|374081772|dbj|BAL46523.1|",{"$nulls":4},{"v":0.0180192663667324,"d":"0.02"},{"v":0.292971809776631,"d":"0.29"},{"v":1.33381106298135,"d":"1.33"},{"v":0.679654239728774,"d":"0.68"},"X"]
["g30462.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|147795669|emb|CAN69982.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0411151326502936,"d":"0.04"},{"v":0.354025081705854,"d":"0.35"},{"v":0,"d":"0.00"},"X"]
["g30479.t1"]
["g30487.t1",{"$nulls":8},"sp|Q9W1B0|GEK_DROME","Serine/threonine-protein kinase Genghis Khan"]
["g70356.t1","0006412:0001649",4872,"0005840:0044425:0005783","translation:osteoblast differentiation","receptor activity","ribosome:membrane part:endoplasmic reticulum",null,null,"sp|Q9P2E9|RRBP1_HUMAN","Ribosome-binding protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.131275696744064,"d":"0.13"},{"v":0,"d":"0.00"},"X"]
["g30512.t1"]
["g30527.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.291763721481333,"d":"0.29"},{"v":0,"d":"0.00"},"X",null,"X"]
["g30545.t1"]
["g30572.t1",{"$nulls":8},"sp|Q66H30|GIN1_RAT","Gypsy retrotransposon integrase-like protein 1","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0.022460551864073,"d":"0.02"},{"v":0.159928126607782,"d":"0.16"},{"v":4.1599596974488,"d":"4.16"},{"v":0.761755802630903,"d":"0.76"},null,"X"]
["g70422.t1",{"$nulls":15},{"v":1.82153598354698,"d":"1.82"},{"v":12.6930737037466,"d":"12.69"},{"v":6.4133454154148,"d":"6.41"},{"v":7.83669753689111,"d":"7.84"}]
["g30594.t1",{"$nulls":15},{"v":6.58601754272246,"d":"6.59"},{"v":8.69633445966547,"d":"8.70"},{"v":31.6579209001844,"d":"31.66"},{"v":20.2307224153133,"d":"20.23"}]
["g30610.t1",null,null,16020,null,null,"membrane","ARATHwo_AT1G25290.1","RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1); Has 5007 Blast hits to 5007 proteins in 1743 species: Archae - 94; Bacteria - 3513; Metazoa - 216; Fungi - 161; Plants - 305; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).","sp|F4ICF4|RBL10_ARATH","RHOMBOID-like protein 10, chloroplastic","gi|727694702|gb|AIY60702.1|",{"$nulls":4},{"v":12.4837087551399,"d":"12.48"},{"v":7.11690665896634,"d":"7.12"},{"v":14.6105410707981,"d":"14.61"},{"v":8.60499616306701,"d":"8.60"}]
["g30628.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0.0510619477761017,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.47065676612074,"d":"0.47"},{"v":0.096741878353812,"d":"0.10"},null,"X"]
["g30645.t1",{"$nulls":10},"gi|821595359|ref|NP_001295680.1|",{"$nulls":4},{"v":8.42244055003024,"d":"8.42"},{"v":31.9373432163971,"d":"31.94"},{"v":21.2714785151968,"d":"21.27"},{"v":93.3621783183577,"d":"93.36"},null,"X"]
["g30660.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|670388583|ref|XP_008674752.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.140437646770573,"d":"0.14"},{"v":0.532992171870451,"d":"0.53"},{"v":0.0590683368042537,"d":"0.06"}]
["g30680.t1",{"$nulls":10},"gi|546301773|ref|XP_005711507.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0920736724520512,"d":"0.09"},{"v":0.267142566807477,"d":"0.27"},{"v":0,"d":"0.00"},"X"]
["g30697.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.13779452545256,"d":"0.14"},{"v":0.13776466101552,"d":"0.14"},"X",null,"X"]
["g30715.t1",null,null,16020,null,null,"membrane","ARATHwo_AT2G37020.2","Translin family protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068).","sp|P79769|TSN_CHICK","Translin","gi|168040468|ref|XP_001772716.1|",{"$nulls":4},{"v":2.82942984160876,"d":"2.83"},{"v":3.44549866402542,"d":"3.45"},{"v":0.799977165305884,"d":"0.80"},{"v":11.7308417407301,"d":"11.73"}]
["g30730.t1","0048731:0048858",null,5929,"system development:cell projection morphogenesis",null,"cilium",null,null,"sp|Q8TAM2|TTC8_HUMAN","Tetratricopeptide repeat protein 8","gi|302855673|ref|XP_002959320.1|",null,"x","x","x",{"v":1.57772016687074,"d":"1.58"},{"v":2.82709595643849,"d":"2.83"},{"v":8.32516794591224,"d":"8.33"},{"v":2.54698498227577,"d":"2.55"}]
["g30749.t1",{"$nulls":13},"x","x",{"v":9.6843281209089,"d":"9.68"},{"v":38.995405732246,"d":"39.00"},{"v":93.3896502788225,"d":"93.39"},{"v":30.7796906529116,"d":"30.78"}]
["g30861.t1",{"$nulls":10},"gi|808875790|gb|KKF24525.1|",{"$nulls":4},{"v":0.571745778127837,"d":"0.57"},{"v":76.3932233746336,"d":"76.39"},{"v":68.9766683655935,"d":"68.98"},{"v":19.9588260632646,"d":"19.96"}]
["g30878.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.178142233118026,"d":"0.18"},{"v":0,"d":"0.00"},"X",null,"X"]
["g70555.t1",null,"0020037:0009055:0005506",null,null,"heme binding:electron carrier activity:iron ion binding",null,"ARATHwo_AT3G27240.1","Cytochrome C1 family; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c1 (InterPro:IPR002326), Cytochrome c1, transmembrane anchor, C-terminal (InterPro:IPR021157), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: Cytochrome C1 family (TAIR:AT5G40810.1); Has 3450 Blast hits to 3450 proteins in 754 species: Archae - 0; Bacteria - 1111; Metazoa - 210; Fungi - 210; Plants - 102; Viruses - 0; Other Eukaryotes - 1817 (source: NCBI BLink).","sp|P29610|CY12_SOLTU","Cytochrome c1-2, heme protein, mitochondrial","gi|527200227|gb|EPS67732.1|",null,"x","x","x",{"v":118.373995486196,"d":"118.37"},{"v":55.2543678207121,"d":"55.25"},{"v":36.0978210020752,"d":"36.10"},{"v":41.1579983988173,"d":"41.16"}]
["g31193.t1",{"$nulls":6},"ARATHwo_AT1G67140.3","SWEETIE (SWEETIE); FUNCTIONS IN: binding; INVOLVED IN: trehalose metabolic process, carbohydrate metabolic process, starch metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024).","sp|A1A5F2|HTR5B_XENTR","HEAT repeat-containing protein 5B","gi|763738699|gb|KJB06198.1|",null,null,"x","x",{"v":2.13739337639215,"d":"2.14"},{"v":3.31985620497976,"d":"3.32"},{"v":8.86007744403037,"d":"8.86"},{"v":3.2754513658119,"d":"3.28"}]
["g31213.t1","0048856:0032501",null,9536,"anatomical structure development:multicellular organismal process",null,"plastid",{"$nulls":4},"gi|694997773|ref|XP_009401106.1|",{"$nulls":4},{"v":5.50433044126485,"d":"5.50"},{"v":2.04546297103129,"d":"2.05"},{"v":1.54557289893104,"d":"1.55"},{"v":0.57742330615065,"d":"0.58"}]
["g31226.t1"]
["g31243.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|657989954|ref|XP_008387198.1|",{"$nulls":4},{"v":0.0105526128428884,"d":"0.01"},{"v":0.312393063273742,"d":"0.31"},{"v":0.863684801274995,"d":"0.86"},{"v":0.291230978423303,"d":"0.29"},"X"]
["g31260.t1",{"$nulls":13},"x","x",{"v":41.34010912609,"d":"41.34"},{"v":17.3444804192633,"d":"17.34"},{"v":4.48509055144608,"d":"4.49"},{"v":8.12681808754253,"d":"8.13"}]
["g30895.t1",{"$nulls":15},{"v":0.181678118488552,"d":"0.18"},{"v":0,"d":"0.00"},{"v":0.282996151083384,"d":"0.28"},{"v":0,"d":"0.00"}]
["g30918.t1",{"$nulls":19},"X",null,"X"]
["g30927.t1",{"$nulls":15},{"v":0.0666872490891325,"d":"0.07"},{"v":0.0749133197403763,"d":"0.07"},{"v":0.36458853194193,"d":"0.36"},{"v":0.163657842950963,"d":"0.16"},"X",null,"X"]
["g30943.t1"]
["g30959.t1",{"$nulls":13},"x","x",{"v":8.0811479576647,"d":"8.08"},{"v":16.2663622090422,"d":"16.27"},{"v":6.34179120966995,"d":"6.34"},{"v":13.1427300436895,"d":"13.14"}]
["g30976.t1",{"$nulls":12},"x","x","x",{"v":156.289719999217,"d":"156.29"},{"v":91.326180384224,"d":"91.33"},{"v":18.138511352646,"d":"18.14"},{"v":0,"d":"0.00"}]
["g30986.t1",null,5488,null,null,"binding",null,"ARATHwo_AT2G32760.1","unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|P11368|POL_IPMA","Putative Pol polyprotein","gi|923851487|ref|XP_013704088.1|",null,null,"x","x",{"v":2.47175658508274,"d":"2.47"},{"v":4.57659111041631,"d":"4.58"},{"v":4.45455389024301,"d":"4.45"},{"v":13.3688919284227,"d":"13.37"}]
["g31010.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q7TD08|POL_CYLCV","Enzymatic polyprotein","gi|661185511|emb|CDH52155.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0444496205835537,"d":"0.04"},{"v":0.174430129820183,"d":"0.17"},"X"]
["g31027.t1",null,"0005488:0016491",null,null,"binding:oxidoreductase activity",null,"ARATHwo_AT1G49880.1","Encodes Erv1, a component of the mitochondrial intermembrane space assembly machinery involved in the import pathway of the small intermembrane space proteins. It contains a Cys-X-Cys shuttle disulfide and oxidizes thioredoxin in vitro.","sp|Q8GXX0|ERV1_ARATH","FAD-linked sulfhydryl oxidase ERV1","gi|294460087|gb|ADE75626.1|",null,null,"x","x",{"v":3.31974068722551,"d":"3.32"},{"v":4.42324547021081,"d":"4.42"},{"v":3.11367128656239,"d":"3.11"},{"v":1.6699835739776,"d":"1.67"}]
["g31044.t1",{"$nulls":15},{"v":0.0480707075522917,"d":"0.05"},{"v":0.210330330866284,"d":"0.21"},{"v":0.0631045335527067,"d":"0.06"},{"v":0.0911242052972067,"d":"0.09"}]
["g31060.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0561597885728537,"d":"0.06"},{"v":0.420140491244306,"d":"0.42"},{"v":0.046595972714936,"d":"0.05"},"X",null,"X"]
["g31077.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.138492524274682,"d":"0.14"},{"v":0.310695349517032,"d":"0.31"},{"v":0,"d":"0.00"}]
["g31093.t1",{"$nulls":13},"x","x",{"v":1.66898642642282,"d":"1.67"},{"v":1.92839403778426,"d":"1.93"},{"v":2.14839021365805,"d":"2.15"},{"v":3.58630384747784,"d":"3.59"}]
["g31113.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.202859013452693,"d":"0.20"},{"v":0,"d":"0.00"}]
["g31130.t1",null,5488,null,null,"binding",null,"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|134119038|ref|XP_771821.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0624777375735883,"d":"0.06"},{"v":0.527500153166282,"d":"0.53"},{"v":0.0753943185328348,"d":"0.08"},null,"X"]
["g70804.t1",{"$nulls":13},"x","x",{"v":9.94142102941303,"d":"9.94"},{"v":26.7458055363434,"d":"26.75"},{"v":7.67219137895246,"d":"7.67"},{"v":4.29423137175945,"d":"4.29"}]
["g31159.t1",{"$nulls":10},"gi|242826075|ref|XP_002488568.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.184354851788689,"d":"0.18"},{"v":0.373706663762635,"d":"0.37"},{"v":0.146735308219828,"d":"0.15"},"X"]
["g31177.t1",{"$nulls":15},{"v":0.0412661795355025,"d":"0.04"},{"v":0.0469459718869653,"d":"0.05"},{"v":0.281365634278581,"d":"0.28"},{"v":0,"d":"0.00"}]
["g31292.t1",9987,16301,null,"cellular process","kinase activity",null,"ARATHwo_AT1G77720.1","Encodes a predicted protein kinase based on sequence similarity.","sp|O94235|MPH1L_SCHPO","Serine/threonine-protein kinase mph1","gi|302688303|ref|XP_003033831.1|",{"$nulls":4},{"v":0.0736917794913909,"d":"0.07"},{"v":0.314186549872174,"d":"0.31"},{"v":1.8630853041231,"d":"1.86"},{"v":3.32313122500849,"d":"3.32"}]
["g31309.t1",{"$nulls":8},"sp|Q2F7J0|POL_XMRV4","Gag-Pol polyprotein","gi|729312287|ref|XP_010530537.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.862132708737634,"d":"0.86"},{"v":1.99457875637882,"d":"1.99"},{"v":0.258779597831886,"d":"0.26"},"X"]
["g31673.t1",{"$nulls":10},"gi|167522493|ref|XP_001745584.1|",{"$nulls":4},{"v":10.9353155784466,"d":"10.94"},{"v":9.13758501218592,"d":"9.14"},{"v":15.0726278205622,"d":"15.07"},{"v":2.306658334114,"d":"2.31"}]
["g31674.t1",{"$nulls":6},"ARATHwo_AT5G19750.1","Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisomal membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT2G14860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q54FR4|PX24D_DICDI","PXMP2/4 family protein 4","gi|731324852|ref|XP_010673194.1|",{"$nulls":4},{"v":4.92666221562861,"d":"4.93"},{"v":7.42921343241034,"d":"7.43"},{"v":24.9341964208728,"d":"24.93"},{"v":1.13636668916066,"d":"1.14"}]
["g31693.t1",{"$nulls":10},"gi|743761311|ref|XP_010941564.1|",{"$nulls":4},{"v":0.0794257643673386,"d":"0.08"},{"v":0.0381687343793817,"d":"0.04"},{"v":0.883834355476993,"d":"0.88"},{"v":0.536218807242725,"d":"0.54"}]
["g31707.t1",null,16740,16020,null,"transferase activity","membrane","ARATHwo_AT5G05170.1","Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening. The xylem cells in primary root have reduced cell expansion and higher than normal lignification.","sp|Q69V23|CESA3_ORYSJ","Probable cellulose synthase A catalytic subunit 3 [UDP-forming]","gi|407098206|gb|AFS95066.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0178491445330857,"d":"0.02"},{"v":3.76543600947508,"d":"3.77"},{"v":0.0416970160874047,"d":"0.04"}]
["g31724.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.476626362302453,"d":"0.48"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X",null,"X"]
["g31741.t1",{"$nulls":6},"ARATHwo_AT5G26130.1","CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT4G33710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q41359|PR1_SAMNI","Pathogenesis-related protein PR-1 type","gi|302785375|ref|XP_002974459.1|",{"$nulls":4},{"v":1.88002072949385,"d":"1.88"},{"v":5.10536707083476,"d":"5.11"},{"v":0.365220692142656,"d":"0.37"},{"v":0,"d":"0.00"}]
["g31759.t1",null,null,5739,null,null,"mitochondrion","ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|828334236|ref|XP_012575125.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0887136627757473,"d":"0.09"},{"v":0.151634225073269,"d":"0.15"},{"v":0,"d":"0.00"},"X"]
["g31316.t1",null,5488,null,null,"binding",null,"ARATHwo_AT2G37010.1","member of NAP subfamily","sp|O92815|POL_WDSV","Gag-Pol polyprotein","gi|723723454|ref|XP_010325234.1|",{"$nulls":4},{"v":1.08562941383657,"d":"1.09"},{"v":2.88070654372273,"d":"2.88"},{"v":3.4271348063915,"d":"3.43"},{"v":1.9487755638911,"d":"1.95"},null,"X"]
["g31327.t1",{"$nulls":13},"x","x",{"v":0.090526462457104,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0.40634956330486,"d":"0.41"},{"v":0.172164640348197,"d":"0.17"}]
["g70869.t1",{"$nulls":10},"gi|599117036|ref|XP_007386384.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.154784522114485,"d":"0.15"},{"v":0.158226978182792,"d":"0.16"},{"v":0,"d":"0.00"}]
["g31360.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|657989954|ref|XP_008387198.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.259023961144989,"d":"0.26"},{"v":1.15904050166388,"d":"1.16"},{"v":0.553724891853374,"d":"0.55"},"X"]
["g70893.t1",15074,"0003676:0008270",null,"DNA integration","nucleic acid binding:zinc ion binding",{"$nulls":3},"sp|P04587|POL_HV1B5","Gag-Pol polyprotein","gi|595836320|ref|XP_007207232.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.282770917055425,"d":"0.28"},{"v":2.44292696676799,"d":"2.44"},{"v":1.83811936885299,"d":"1.84"},"X"]
["g31393.t1",{"$nulls":15},{"v":0.403624344792878,"d":"0.40"},{"v":0.428085535161154,"d":"0.43"},{"v":0.208656667428685,"d":"0.21"},{"v":0.887745429128606,"d":"0.89"}]
["g31422.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|661175507|emb|CDH61247.1|",{"$nulls":4},{"v":0.0195683022806272,"d":"0.02"},{"v":0.353639275518503,"d":"0.35"},{"v":0.568993303668987,"d":"0.57"},{"v":0,"d":"0.00"},null,"X"]
["g31428.t1",{"$nulls":19},"X",null,"X"]
["g31444.t1",{"$nulls":10},"gi|599117036|ref|XP_007386384.1|",{"$nulls":4},{"v":0.0422190980049793,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.535146466403916,"d":"0.54"},{"v":0,"d":"0.00"},null,"X"]
["g31460.t1",{"$nulls":8},"sp|P0CT43|TF28_SCHPO","Transposon Tf2-8 polyprotein","gi|861612721|gb|KMQ85528.1|",{"$nulls":4},{"v":0.361925657336345,"d":"0.36"},{"v":1.24536495396166,"d":"1.25"},{"v":5.80570063597645,"d":"5.81"},{"v":2.27724595264304,"d":"2.28"},"X"]
["g31477.t1",{"$nulls":10},"gi|861618021|gb|KMQ86727.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0372681041371603,"d":"0.04"},{"v":0.440730641365958,"d":"0.44"},{"v":0.126088999739853,"d":"0.13"},"X"]
["g70974.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.133345093872808,"d":"0.13"},{"v":0.42689704221638,"d":"0.43"},{"v":0.088031826282342,"d":"0.09"}]
["g31510.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|848865111|ref|XP_012833272.1|",{"$nulls":4},{"v":0.0315805256019258,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.071665205080434,"d":"0.07"}]
["g31527.t1","0046686:0006486",31593,"0005634:0005829","response to cadmium ion:protein glycosylation","polyubiquitin binding","nucleus:cytosol",null,null,"sp|Q4WGS4|DDI1_ASPFU","DNA damage-inducible protein 1","gi|586667750|ref|XP_006833272.1|",null,null,"x","x",{"v":2.70119013648134,"d":"2.70"},{"v":4.55756230840393,"d":"4.56"},{"v":4.0997732754474,"d":"4.10"},{"v":3.21985481012778,"d":"3.22"}]
["g31543.t1",{"$nulls":15},{"v":0.065633644419063,"d":"0.07"},{"v":0.0737681406795103,"d":"0.07"},{"v":0.154468316565182,"d":"0.15"},{"v":0,"d":"0.00"}]
["g31561.t1",{"$nulls":8},"sp|Q65XV7|RFA1C_ORYSJ","Replication protein A 70 kDa DNA-binding subunit C",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.421517696285949,"d":"0.42"},{"v":0,"d":"0.00"},null,"X"]
["g31578.t1",{"$nulls":8},"sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|595441411|gb|EXX53826.1|"]
["g31596.t1"]
["g31610.t1"]
["g31627.t1",{"$nulls":8},"sp|D4ATM6|A7590_ARTBC","Uncharacterized secreted protein ARB_07590","gi|663691731|ref|WP_030468798.1|",{"$nulls":4},{"v":37.2359256810424,"d":"37.24"},{"v":0.323329868525476,"d":"0.32"},{"v":0.976306746141699,"d":"0.98"},{"v":0.492976247548311,"d":"0.49"}]
["g31644.t1",6412,3735,5840,"translation","structural constituent of ribosome","ribosome",{"$nulls":4},"gi|168066092|ref|XP_001784977.1|",null,"x","x","x",{"v":41.846391356119,"d":"41.85"},{"v":3.98622593486895,"d":"3.99"},{"v":1.91676715317178,"d":"1.92"},{"v":4.8994981234496,"d":"4.90"}]
["g31783.t1"]
["g31798.t1",{"$nulls":15},{"v":0.0311075663237544,"d":"0.03"},{"v":0.2741017607392,"d":"0.27"},{"v":0.115402977483801,"d":"0.12"},{"v":1.22922224399238,"d":"1.23"}]
["g31815.t1",null,null,16020,null,null,"membrane",null,null,"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923654746|ref|XP_013645649.1|"]
["g32358.t2",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|"]
["g32376.t1",{"$nulls":10},"gi|444705827|gb|ELW47215.1|"]
["g32382.t1",{"$nulls":8},"sp|Q754R2|DDI1_ASHGO","DNA damage-inducible protein 1",{"$nulls":5},{"v":0.655422458783911,"d":"0.66"},{"v":136.816430769729,"d":"136.82"},{"v":151.28111086119,"d":"151.28"},{"v":30.4265921901836,"d":"30.43"},null,"X"]
["g32405.t1",{"$nulls":10},"gi|302781787|ref|XP_002972667.1|",null,null,"x","x",{"v":1.76817339246844,"d":"1.77"},{"v":9.33739110639549,"d":"9.34"},{"v":2.2810139478417,"d":"2.28"},{"v":2.72999416253922,"d":"2.73"}]
["g32423.t1",{"$nulls":13},"x","x",{"v":1.2887544138387,"d":"1.29"},{"v":18.4150165206516,"d":"18.42"},{"v":17.7146493202308,"d":"17.71"},{"v":0.201246109098368,"d":"0.20"}]
["g32438.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|374081772|dbj|BAL46523.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.037164301791419,"d":"0.04"},{"v":0.542203254056492,"d":"0.54"},{"v":0.0606560804044031,"d":"0.06"},"X"]
["g31841.t1",{"$nulls":12},"x","x","x",{"v":17.1994342149334,"d":"17.20"},{"v":12.05349706675,"d":"12.05"},{"v":8.33120939771264,"d":"8.33"},{"v":28.7262293243723,"d":"28.73"}]
["g31857.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.519126395021078,"d":"0.52"},{"v":0,"d":"0.00"}]
["g71112.t1",{"$nulls":8},"sp|Q1DU75|KU70_COCIM","ATP-dependent DNA helicase II subunit 1","gi|548840683|gb|ERN00788.1|",null,null,"x","x",{"v":0.077224440333712,"d":"0.08"},{"v":0.187443833665094,"d":"0.19"},{"v":0,"d":"0.00"},{"v":1.13418975248555,"d":"1.13"}]
["g31889.t1",{"$nulls":10},"gi|302810378|ref|XP_002986880.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0.0515194654715657,"d":"0.05"},{"v":78.1002581285196,"d":"78.10"},{"v":0,"d":"0.00"}]
["g31906.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.107953024417125,"d":"0.11"},{"v":0.708622513728963,"d":"0.71"},{"v":0.467400400100012,"d":"0.47"},"X"]
["g31922.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0990627523561767,"d":"0.10"},{"v":0.0488892238357123,"d":"0.05"},{"v":0,"d":"0.00"}]
["g31940.t1","0006623:0048193:0000902:0016049",null,16020,"protein targeting to vacuole:Golgi vesicle transport:cell morphogenesis:cell growth",null,"membrane","ARATHwo_AT3G16270.1","ENTH/VHS family protein; INVOLVED IN: intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Epsin, N-terminal (InterPro:IPR001026), ENTH/VHS (InterPro:IPR008942); Has 168 Blast hits to 159 proteins in 72 species: Archae - 0; Bacteria - 9; Metazoa - 51; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).","sp|Q9C5H4|Y3627_ARATH","VHS domain-containing protein At3g16270","gi|672107322|ref|XP_008805229.1|",{"$nulls":4},{"v":2.29183456651798,"d":"2.29"},{"v":2.04357599412945,"d":"2.04"},{"v":7.77334652820329,"d":"7.77"},{"v":1.90967119066528,"d":"1.91"}]
["g31954.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.107274617184811,"d":"0.11"},{"v":0,"d":"0.00"},"X",null,"X"]
["g31958.t1"]
["g31974.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|77556044|gb|ABA98840.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.042931486369106,"d":"0.04"},{"v":0.0593586517734688,"d":"0.06"},{"v":0,"d":"0.00"}]
["g31988.t1",{"$nulls":13},"x","x",{"v":5.90911863605011,"d":"5.91"},{"v":3.59675960023955,"d":"3.60"},{"v":3.11272048287152,"d":"3.11"},{"v":8.64362563937319,"d":"8.64"}]
["g32005.t1",{"$nulls":15},{"v":0.840652206857845,"d":"0.84"},{"v":3.6923634691622,"d":"3.69"},{"v":1.42294926959682,"d":"1.42"},{"v":0.978162223882967,"d":"0.98"}]
["g32021.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|795009754|ref|XP_011863460.1|",{"$nulls":4},{"v":0.765117102732174,"d":"0.77"},{"v":0.323947630889056,"d":"0.32"},{"v":0.090182074596753,"d":"0.09"},{"v":0.080658134379766,"d":"0.08"},null,"X"]
["g32039.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.291612515658331,"d":"0.29"},{"v":0,"d":"0.00"},null,"X","X"]
["g32056.t1"]
["g32073.t1",{"$nulls":8},"sp|P02469|LAMB1_MOUSE","Laminin subunit beta-1",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.177114691323656,"d":"0.18"},{"v":0,"d":"0.00"}]
["g32091.t1"]
["g32111.t1",{"$nulls":8},"sp|Q0R5R2|POL_HTL32","Gag-Pro-Pol polyprotein","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0.0456869227789911,"d":"0.05"},{"v":0.17373810643954,"d":"0.17"},{"v":1.15887412982141,"d":"1.16"},{"v":0.61064637078401,"d":"0.61"},null,"X"]
["g32440.t1"]
["g32457.t1",{"$nulls":15},{"v":0.105889420336826,"d":"0.11"},{"v":0.136771417977002,"d":"0.14"},{"v":0.131665580990193,"d":"0.13"},{"v":0,"d":"0.00"}]
["g38373.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|340382901|ref|XP_003389956.1|",{"$nulls":8},"X"]
["g38390.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.118296094434103,"d":"0.12"},{"v":0,"d":"0.00"},"X",null,"X"]
["g38411.t1",{"$nulls":13},"x","x",{"v":5.9705490464838,"d":"5.97"},{"v":11.9448696862644,"d":"11.94"},{"v":3.31371555570313,"d":"3.31"},{"v":0.790511090448491,"d":"0.79"}]
["g38423.t1",6096,"0004634:0000287","0000015:0005634","glycolysis","phosphopyruvate hydratase activity:magnesium ion binding","phosphopyruvate hydratase complex:nucleus","ARATHwo_AT2G29560.1","Encodes a putative phosphoenolpyruvate enolase that is localized both to the nucleus and the cytoplasm.","sp|Q9ZW34|ENO3_ARATH","Cytosolic enolase 3","gi|302758724|ref|XP_002962785.1|",null,null,"x","x",{"v":25.1941109841008,"d":"25.19"},{"v":36.0013045017788,"d":"36.00"},{"v":17.7635239681491,"d":"17.76"},{"v":44.169350578126,"d":"44.17"}]
["g38441.t1",null,16301,null,null,"kinase activity",null,"ARATHwo_AT1G24030.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G18610.2); Has 120319 Blast hits to 118974 proteins in 4454 species: Archae - 114; Bacteria - 14029; Metazoa - 43843; Fungi - 10580; Plants - 33748; Viruses - 447; Other Eukaryotes - 17558 (source: NCBI BLink).","sp|Q9SYS7|CRK39_ARATH","Putative cysteine-rich receptor-like protein kinase 39","gi|923599926|ref|XP_013740824.1|",{"$nulls":4},{"v":1.06181094109269,"d":"1.06"},{"v":0.425989175541478,"d":"0.43"},{"v":1.10876068333245,"d":"1.11"},{"v":0.434231352166344,"d":"0.43"}]
["g38457.t1",{"$nulls":15},{"v":0.0430572115485611,"d":"0.04"},{"v":0.097879342980891,"d":"0.10"},{"v":0.576514294639263,"d":"0.58"},{"v":0.798617041264345,"d":"0.80"},"X",null,"X"]
["g38474.t1",6412,3735,5840,"translation","structural constituent of ribosome","ribosome","ARATHwo_AT4G18100.1","Ribosomal protein L32e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: callus, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: Ribosomal protein L32e (TAIR:AT5G46430.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P49211|RL321_ARATH","60S ribosomal protein L32-1","gi|116781171|gb|ABK21991.1|",{"$nulls":4},{"v":23.6501303278416,"d":"23.65"},{"v":4.27124698723473,"d":"4.27"},{"v":15.2197399355198,"d":"15.22"},{"v":10.8887411399891,"d":"10.89"}]
["g38491.t1",null,"0046872:0016746","0016023:0016020",null,"metal ion binding:transferase activity, transferring acyl groups","cytoplasmic membrane-bounded vesicle:membrane","ARATHwo_AT3G09320.1","DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G04270.1); Has 5137 Blast hits to 5129 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2212; Fungi - 755; Plants - 839; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).","sp|Q93VV0|ZDHC6_ARATH","Probable protein S-acyltransferase 16","gi|148907573|gb|ABR16916.1|",{"$nulls":4},{"v":10.161553123096,"d":"10.16"},{"v":4.17974704781672,"d":"4.18"},{"v":2.37932029990183,"d":"2.38"},{"v":4.99911510787732,"d":"5.00"}]
["g38502.t1",6468,"0005524:0004674",null,"protein phosphorylation","ATP binding:protein serine/threonine kinase activity",null,"ARATHwo_AT3G25840.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G13350.1); Has 159605 Blast hits to 120248 proteins in 3358 species: Archae - 256; Bacteria - 15698; Metazoa - 69851; Fungi - 20258; Plants - 17457; Viruses - 788; Other Eukaryotes - 35297 (source: NCBI BLink).","sp|Q5RKH1|PRP4B_RAT","Serine/threonine-protein kinase PRP4 homolog","gi|168053270|ref|XP_001779060.1|",{"$nulls":4},{"v":2.1791053562652,"d":"2.18"},{"v":3.36819440868946,"d":"3.37"},{"v":16.404218417537,"d":"16.40"},{"v":2.99890055713247,"d":"3.00"}]
["g38526.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.35786868023369,"d":"0.36"},{"v":0.371226275478633,"d":"0.37"},{"v":0.284424152985172,"d":"0.28"}]
["g38542.t1",9987,3677,"0000786:0000775:0005634","cellular process","DNA binding","nucleosome:chromosome, centromeric region:nucleus","ARATHwo_AT5G65360.1","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P0CO04|H3_CRYNJ","Histone H3","gi|667835348|ref|XP_007781843.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.298617599785842,"d":"0.30"},{"v":0.0823783314674042,"d":"0.08"},{"v":0,"d":"0.00"}]
["g32469.t1","0034976:0006457:0006355:0016567","0031625:0005524","0005829:0005618:0005739:0005774:0005794:0005634:0005886:0048046","response to endoplasmic reticulum stress:protein folding:regulation of transcription, DNA-dependent:protein ubiquitination","ubiquitin protein ligase binding:ATP binding","cytosol:cell wall:mitochondrion:vacuolar membrane:Golgi apparatus:nucleus:plasma membrane:apoplast","ARATHwo_AT3G12580.1","heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).","sp|P09189|HSP7C_PETHY","Heat shock cognate 70 kDa protein","gi|629105370|gb|KCW70839.1|",{"$nulls":4},{"v":460.67846428796,"d":"460.68"},{"v":148.46879836453,"d":"148.47"},{"v":72.304622321944,"d":"72.30"},{"v":15.2317839639714,"d":"15.23"}]
["g32485.t1",{"$nulls":6},"ARATHwo_AT4G29900.1","one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.","sp|Q9SZR1|ACA10_ARATH","Calcium-transporting ATPase 10, plasma membrane-type","gi|449465342|ref|XP_004150387.1|",null,null,"x","x"]
["g32498.t1",{"$nulls":6},"ARATHwo_AT5G13950.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1).","sp|Q6PIJ4|NFRKB_MOUSE","Nuclear factor related to kappa-B-binding protein","gi|224128780|ref|XP_002320420.1|",null,null,"x","x",{"v":5.86206215153103,"d":"5.86"},{"v":2.33646888998263,"d":"2.34"},{"v":1.96032100216746,"d":"1.96"},{"v":6.70538867349529,"d":"6.71"}]
["g71365.t1"]
["g32535.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.096690901567532,"d":"0.10"},{"v":0.0574660490840787,"d":"0.06"},"X",null,"X"]
["g32551.t1",{"$nulls":8},"sp|Q5RJF7|CA2D4_MOUSE","Voltage-dependent calcium channel subunit alpha-2/delta-4",{"$nulls":3},"x","x",{"v":0.769036770098685,"d":"0.77"},{"v":2.86802007339648,"d":"2.87"},{"v":2.55170547749676,"d":"2.55"},{"v":3.45609898239133,"d":"3.46"}]
["g32569.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|77555663|gb|ABA98459.1|",{"$nulls":4},{"v":0.0364136554476412,"d":"0.04"},{"v":0.971475571977992,"d":"0.97"},{"v":3.18913733857943,"d":"3.19"},{"v":0.971713006719006,"d":"0.97"},"X"]
["g71401.t1"]
["g32603.t1",{"$nulls":13},"x","x",{"v":0.482986869769987,"d":"0.48"},{"v":1.83824263160282,"d":"1.84"},{"v":15.923650963059,"d":"15.92"},{"v":1.64716280164357,"d":"1.65"},"X",null,"X"]
["g32620.t1",{"$nulls":13},"x","x",{"v":1.66743159068628,"d":"1.67"},{"v":2.56599091584765,"d":"2.57"},{"v":1.34992847232063,"d":"1.35"},{"v":0.588798540243163,"d":"0.59"}]
["g32637.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":8},"X"]
["g32655.t1","0010155:0009735:0009750:0006098:0010218:0009749:0006833:0010114:0009651:0007568:0006542:0006972:0009744:0007030:0006096:0009637:0009644:0046686:0009409:0019344:0019676","0004356:0005524","0009941:0048046:0022626:0009570:0009535:0005739","regulation of proton transport:response to cytokinin stimulus:response to fructose stimulus:pentose-phosphate shunt:response to far red light:response to glucose stimulus:water transport:response to red light:response to salt stress:aging:glutamine biosynthetic process:hyperosmotic response:response to sucrose stimulus:Golgi organization:glycolysis:response to blue light:response to high light intensity:response to cadmium ion:response to cold:cysteine biosynthetic process:ammonia assimilation cycle","glutamate-ammonia ligase activity:ATP binding","chloroplast envelope:apoplast:cytosolic ribosome:chloroplast stroma:chloroplast thylakoid membrane:mitochondrion","ARATHwo_AT1G48470.1","Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots.","sp|P52782|GLNA_LUPLU","Glutamine synthetase nodule isozyme","gi|567876027|ref|XP_006430603.1|",null,"x",null,"x",{"v":6.71879511613506,"d":"6.72"},{"v":3.97941128440968,"d":"3.98"},{"v":1.02500438151271,"d":"1.03"},{"v":2.38959174683716,"d":"2.39"}]
["g32674.t1",{"$nulls":19},"X",null,"X"]
["g32689.t2",null,5488,null,null,"binding",{"$nulls":3},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|657986524|ref|XP_008385391.1|",{"$nulls":4},{"v":0.0201455570560618,"d":"0.02"},{"v":0.061202375073318,"d":"0.06"},{"v":0.438036925580383,"d":"0.44"},{"v":0.12533153536965,"d":"0.13"}]
["g32704.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0109670068423715,"d":"0.01"},{"v":0.146621398070345,"d":"0.15"},{"v":0.670585763643552,"d":"0.67"},{"v":0.224168813766702,"d":"0.22"},"X"]
["g32720.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.02898151906678,"d":"0.03"},{"v":0.0396519759306373,"d":"0.04"},{"v":0,"d":"0.00"}]
["g33924.t1",{"$nulls":6},"ARATHwo_AT5G55610.1","unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|168039580|ref|XP_001772275.1|",null,"x","x","x",{"v":17.1054405458195,"d":"17.11"},{"v":16.3986032671913,"d":"16.40"},{"v":7.95006362734581,"d":"7.95"},{"v":11.1064474321536,"d":"11.11"}]
["g33929.t1",{"$nulls":6},"ARATHwo_AT4G33270.1","Encodes a CDC20 protein that interacts with APC subunits, components of the mitochondrial checkpoint complex and mitotic cyclin substrates and is indispensable for normal plant development and fertility.","sp|Q9SZA4|CDC21_ARATH","Cell division cycle 20.1, cofactor of APC complex","gi|302767642|ref|XP_002967241.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":1.3886932420271,"d":"1.39"},{"v":2.98331598999017,"d":"2.98"},{"v":15.6254659496776,"d":"15.63"}]
["g34249.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.815647884117806,"d":"0.82"},{"v":1.32469244628843,"d":"1.32"},{"v":1.08463765542782,"d":"1.08"},"X",null,"X"]
["g34267.t1",{"$nulls":10},"gi|646284957|gb|KDQ06899.1|",{"$nulls":4},{"v":0.118577819395566,"d":"0.12"},{"v":0.310143951391537,"d":"0.31"},{"v":1.36097825190841,"d":"1.36"},{"v":0.44873139507088,"d":"0.45"},"X"]
["g34284.t1",null,16787,null,null,"hydrolase activity",{"$nulls":3},"sp|O34481|RECDL_BACSU","ATP-dependent RecD-like DNA helicase","gi|498164724|ref|WP_010478880.1|",null,null,"x","x",{"v":4.78933304661615,"d":"4.79"},{"v":4.66616452913557,"d":"4.67"},{"v":3.99553328990377,"d":"4.00"},{"v":9.05139781176211,"d":"9.05"}]
["g34300.t1"]
["g34301.t1",{"$nulls":20},"X","X"]
["g33942.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0676867530366183,"d":"0.07"},{"v":0.0907866884041453,"d":"0.09"},{"v":0,"d":"0.00"},"X",null,"X"]
["g33950.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|637273887|ref|XP_008103836.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.164536610399358,"d":"0.16"},{"v":0.245169580710488,"d":"0.25"},{"v":0.156754888421732,"d":"0.16"},null,"X"]
["g33965.t1",null,"0003676:0000166",null,null,"nucleic acid binding:nucleotide binding",null,"ARATHwo_AT1G71800.1","RNA 3′-end?processing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC.","sp|Q9M9G6|CTF64_ARATH","Cleavage stimulating factor 64","gi|659113670|ref|XP_008456694.1|",{"$nulls":4},{"v":0.21575566604872,"d":"0.22"},{"v":1.67997964397713,"d":"1.68"},{"v":1.78967324156093,"d":"1.79"},{"v":5.09114148315998,"d":"5.09"}]
["g33982.t1",{"$nulls":13},"x","x",{"v":1.06127189177797,"d":"1.06"},{"v":3.43284237039711,"d":"3.43"},{"v":5.96822800070796,"d":"5.97"},{"v":8.1747960243513,"d":"8.17"}]
["g33999.t1",{"$nulls":15},{"v":1.60475255939109,"d":"1.60"},{"v":0.370624825034816,"d":"0.37"},{"v":0.128946062901829,"d":"0.13"},{"v":1.09058294763418,"d":"1.09"}]
["g34029.t1",16310,"0005488:0004672",null,"phosphorylation","binding:protein kinase activity",null,"ARATHwo_AT1G20650.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G76370.1); Has 115469 Blast hits to 114023 proteins in 4226 species: Archae - 107; Bacteria - 13502; Metazoa - 42790; Fungi - 9725; Plants - 32710; Viruses - 380; Other Eukaryotes - 16255 (source: NCBI BLink).","sp|Q9FFW5|PERK8_ARATH","Proline-rich receptor-like protein kinase PERK8","gi|357115011|ref|XP_003559287.1|",{"$nulls":4},{"v":0.823795670254182,"d":"0.82"},{"v":0,"d":"0.00"},{"v":0.21329478570107,"d":"0.21"},{"v":0.483479711967709,"d":"0.48"}]
["g34033.t1",9987,16772,null,"cellular process","transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT3G45390.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G45330.1); Has 32581 Blast hits to 20319 proteins in 446 species: Archae - 0; Bacteria - 89; Metazoa - 475; Fungi - 62; Plants - 31859; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).","sp|P52304|POLO_DROME","Serine/threonine-protein kinase polo","gi|720082888|ref|XP_010242732.1|",{"$nulls":4},{"v":0.851684664854122,"d":"0.85"},{"v":0.128492053156055,"d":"0.13"},{"v":0.555891470712804,"d":"0.56"},{"v":0.0382179722688817,"d":"0.04"}]
["g34051.t1",{"$nulls":8},"sp|D4ATM6|A7590_ARTBC","Uncharacterized secreted protein ARB_07590","gi|576042406|ref|XP_006695076.1|",{"$nulls":4},{"v":0.0914640613719769,"d":"0.09"},{"v":0.643947580661306,"d":"0.64"},{"v":0.114582737996341,"d":"0.11"},{"v":0.549983616541769,"d":"0.55"}]
["g34068.t1"]
["g34083.t1",{"$nulls":10},"gi|3319351|gb|AAC26240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0318205567322054,"d":"0.03"},{"v":0.328115321593944,"d":"0.33"},{"v":0.331546521030636,"d":"0.33"},null,"X"]
["g71661.t1",{"$nulls":6},"ARATHwo_AT5G59560.1","Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.","sp|Q8GWZ6|SRR1_ARATH","Protein SENSITIVITY TO RED LIGHT REDUCED 1","gi|255559808|ref|XP_002520923.1|",null,null,"x","x",{"v":12.4126477579524,"d":"12.41"},{"v":12.140173850182,"d":"12.14"},{"v":11.9585205070275,"d":"11.96"},{"v":12.4413956106062,"d":"12.44"}]
["g34115.t1",{"$nulls":15},{"v":0.82966582669233,"d":"0.83"},{"v":0.292903214099293,"d":"0.29"},{"v":2.57600866580989,"d":"2.58"},{"v":0.605213365551137,"d":"0.61"},"X",null,"X"]
["g34133.t1",{"$nulls":13},"x","x",{"v":0.448976346601846,"d":"0.45"},{"v":1.97183270702548,"d":"1.97"},{"v":11.712258747576,"d":"11.71"},{"v":1.81305211374869,"d":"1.81"}]
["g34148.t1",{"$nulls":8},"sp|Q28343|PGCA_CANLF","Aggrecan core protein","gi|302753238|ref|XP_002960043.1|",{"$nulls":4},{"v":0.0655091579076278,"d":"0.07"},{"v":0.104586012574469,"d":"0.10"},{"v":12.809219950516,"d":"12.81"},{"v":0.402949542954343,"d":"0.40"}]
["g34164.t1",{"$nulls":6},"ARATHwo_AT1G53760.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","sp|O13942|YEPC_SCHPO","Uncharacterized protein C23H3.12c","gi|294460724|gb|ADE75936.1|",null,null,"x","x",{"v":1.73498787199678,"d":"1.73"},{"v":2.09417473184656,"d":"2.09"},{"v":0.845598794738369,"d":"0.85"},{"v":3.02893646904999,"d":"3.03"}]
["g34183.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|115470825|ref|NP_001059011.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.388596691778365,"d":"0.39"},{"v":0,"d":"0.00"},"X"]
["g34198.t1",{"$nulls":15},{"v":0.0561996161693308,"d":"0.06"},{"v":0.202245034123512,"d":"0.20"},{"v":0.0735344315838467,"d":"0.07"},{"v":0,"d":"0.00"}]
["g34216.t1",{"$nulls":8},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0359032300044083,"d":"0.04"},{"v":0.159415804827164,"d":"0.16"},{"v":0,"d":"0.00"},"X"]
["g34329.t1","0006103:0009220:0006536:0006531","0005507:0004069:0080130:0030170",5759,"2-oxoglutarate metabolic process:pyrimidine ribonucleotide biosynthetic process:glutamate metabolic process:aspartate metabolic process","copper ion binding:L-aspartate:2-oxoglutarate aminotransferase activity:L-phenylalanine:2-oxoglutarate aminotransferase activity:pyridoxal phosphate binding","mitochondrial matrix","ARATHwo_AT2G30970.1","ASPARTATE AMINOTRANSFERASE 1","sp|P46643|AAT1_ARATH","Aspartate aminotransferase, mitochondrial","gi|922458660|ref|XP_013631015.1|",null,null,"x","x",{"v":21.7421828700478,"d":"21.74"},{"v":29.9170313156329,"d":"29.92"},{"v":23.8926337520614,"d":"23.89"},{"v":13.5928665362016,"d":"13.59"}]
["g34346.t1",42221,16788,5737,"response to chemical stimulus","hydrolase activity, acting on ester bonds","cytoplasm","ARATHwo_AT2G03800.1","encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.","sp|Q9ZPQ3|GEK1_ARATH","D-aminoacyl-tRNA deacylase","gi|719967148|ref|XP_010260977.1|",null,null,"x","x",{"v":4.75577247639376,"d":"4.76"},{"v":10.2520944236283,"d":"10.25"},{"v":12.3317718051192,"d":"12.33"},{"v":11.5924043457514,"d":"11.59"}]
["g34673.t1",{"$nulls":20},"X","X"]
["g34686.t1",{"$nulls":8},"sp|P12235|ADT1_HUMAN","ADP/ATP translocase 1","gi|657983272|ref|XP_008383705.1|",{"$nulls":4},{"v":2.25664437034342,"d":"2.26"},{"v":4.70332316794145,"d":"4.70"},{"v":1.85756558682518,"d":"1.86"},{"v":4.82783727845232,"d":"4.83"}]
["g34702.t1","0042221:0051716:0048513:0044763:0048522:0006355",3677,44424,"response to chemical stimulus:cellular response to stimulus:organ development:single-organism cellular process:positive regulation of cellular process:regulation of transcription, DNA-dependent","DNA binding","intracellular part","ARATHwo_AT4G11080.1","Encodes a protein containing three copies of the HMG (high mobility group)-box domain. The two Arabidopsis 3xHMG-box proteins are: AT4G11080 (3xHMG-box1) and AT4G23800 (3xHMG-box2). Interacts with mitotic and meiotic chromosomes.","sp|Q9T012|HMG13_ARATH","High mobility group B protein 13","gi|823183131|ref|XP_012488743.1|",null,null,"x","x",{"v":0.675353374479286,"d":"0.68"},{"v":1.28801383964624,"d":"1.29"},{"v":5.43981636040819,"d":"5.44"},{"v":4.19727292870438,"d":"4.20"}]
["g34719.t1",{"$nulls":15},{"v":0.108659083617448,"d":"0.11"},{"v":0,"d":"0.00"},{"v":0.274152787766527,"d":"0.27"},{"v":1.01315884907785,"d":"1.01"}]
["g34734.t2",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|62732761|gb|AAX94880.1|",{"$nulls":4},{"v":0.258204202788292,"d":"0.26"},{"v":1.00480336334261,"d":"1.00"},{"v":4.34168626524432,"d":"4.34"},{"v":1.30384078210506,"d":"1.30"}]
["g34356.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",{"$nulls":12},"X"]
["g34366.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0650629201595957,"d":"0.07"},{"v":0.470804931986345,"d":"0.47"},{"v":0,"d":"0.00"},"X",null,"X"]
["g34392.t1",{"$nulls":20},"X","X"]
["g34409.t1",{"$nulls":15},{"v":1.00623737050166,"d":"1.01"},{"v":2.27062325319438,"d":"2.27"},{"v":0.789821135879383,"d":"0.79"},{"v":0,"d":"0.00"}]
["g34426.t1",{"$nulls":8},"sp|Q54K09|GRLQ_DICDI","Metabotropic glutamate receptor-like protein Q","gi|500594602|ref|WP_011957008.1|",{"$nulls":4},{"v":0.0935040873872015,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.115609636779259,"d":"0.12"}]
["g34444.t1"]
["g71803.t1",{"$nulls":6},"ARATHwo_AT5G36000.1","BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9M365|FB331_ARATH","Probable F-box protein At3g61730","gi|168064126|ref|XP_001784016.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":7.70418845252575,"d":"7.70"}]
["g34478.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|698481725|ref|XP_009787832.1|",{"$nulls":4},{"v":0.11297235179378,"d":"0.11"},{"v":0.21650176776691,"d":"0.22"},{"v":2.0422470123384,"d":"2.04"},{"v":0.66546668329615,"d":"0.67"},"X"]
["g34495.t1",{"$nulls":8},"sp|Q9H0J4|QRIC2_HUMAN","Glutamine-rich protein 2",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.092268602778427,"d":"0.09"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g34511.t1"]
["g34528.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.196270925809272,"d":"0.20"},{"v":0,"d":"0.00"}]
["g34543.t1","0044699:0044267:0009628:0006950","0051082:0005524","0016020:0016023:0044446:0005783","single-organism process:cellular protein metabolic process:response to abiotic stimulus:response to stress","unfolded protein binding:ATP binding","membrane:cytoplasmic membrane-bounded vesicle:intracellular organelle part:endoplasmic reticulum","ARATHwo_AT4G24190.1","encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.","sp|P35016|ENPL_CATRO","Endoplasmin homolog","gi|641866199|gb|KDO84884.1|",null,null,"x","x",{"v":46.2556952493613,"d":"46.26"},{"v":172.877265616641,"d":"172.88"},{"v":220.253868466391,"d":"220.25"},{"v":71.2260752287279,"d":"71.23"}]
["g34562.t1",{"$nulls":12},"x","x","x",{"v":39.2456429648912,"d":"39.25"},{"v":1.76589931664604,"d":"1.77"},{"v":0,"d":"0.00"},{"v":5.88217016378399,"d":"5.88"}]
["g34580.t1",{"$nulls":15},{"v":0.189175756826085,"d":"0.19"},{"v":0.0881226931382497,"d":"0.09"},{"v":0.12188120266093,"d":"0.12"},{"v":2.05719378007608,"d":"2.06"}]
["g71880.t1",{"$nulls":13},"x","x",{"v":0.13133634770508,"d":"0.13"},{"v":5.03362758129274,"d":"5.03"},{"v":0.572251853548738,"d":"0.57"},{"v":0,"d":"0.00"}]
["g34611.t1",{"$nulls":13},"x","x",{"v":6.11852006922148,"d":"6.12"},{"v":4.29076375302106,"d":"4.29"},{"v":5.59721572683429,"d":"5.60"},{"v":3.29165936213921,"d":"3.29"}]
["g34613.t1",{"$nulls":6},"ARATHwo_AT5G50690.1","Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.","sp|Q9LUF2|HSD4B_ARATH","11-beta-hydroxysteroid dehydrogenase-like 4B","gi|242072750|ref|XP_002446311.1|",null,"x","x","x",{"v":0.915034352233082,"d":"0.92"},{"v":53.4148768995225,"d":"53.41"},{"v":0.67814572846918,"d":"0.68"},{"v":233.786881793189,"d":"233.79"}]
["g34647.t1"]
["g34648.t1"]
["g34755.t1",71266,16846,9507,"'de novo' L-methionine biosynthetic process","carbon-sulfur lyase activity","chloroplast","ARATHwo_AT3G57050.1","Encodes second enzyme in the methionine biosynthetic pathway","sp|P53780|METC_ARATH","Cystathionine beta-lyase, chloroplastic","gi|659129781|ref|XP_008464842.1|"]
["g34772.t1"]
["g34790.t1",{"$nulls":6},"ARATHwo_AT3G28180.1","encodes a gene similar to cellulose synthase","sp|Q59167|ACSA2_KOMHA","Cellulose synthase 2","gi|909132294|gb|KNE58894.1|",null,null,"x","x",{"v":1.49669368351934,"d":"1.50"},{"v":4.78103061081237,"d":"4.78"},{"v":5.33119900893083,"d":"5.33"},{"v":12.0250312213317,"d":"12.03"}]
["g71972.t1",9439,"0003677:0016829",null,"cyanate metabolic process","DNA binding:lyase activity",null,"ARATHwo_AT3G23490.1","Encodes a cyanase that catalyzes the bicarbonate-dependent breakdown of cyanate to ammonia and bicarbonate. CYN forms a hexadecamer and is believed to be a cytosolic protein. Long-term exposure to NaCl increases CYN transcript levels. It is also expressed at higher levels in flowers relative to stems, roots, and seedlings.","sp|A9TND9|CYNS_PHYPA","Cyanate hydratase","gi|697155812|ref|XP_009586651.1|",null,"x","x","x",{"v":153.780670171429,"d":"153.78"},{"v":426.967254955676,"d":"426.97"},{"v":189.639269733542,"d":"189.64"},{"v":368.499163569024,"d":"368.50"}]
["g34824.t1",{"$nulls":8},"sp|P03361|POL_BLVJ","Pol polyprotein","gi|671688033|emb|CDS12578.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.112655499606772,"d":"0.11"},{"v":0,"d":"0.00"},"X"]
["g34840.t1",{"$nulls":10},"gi|302814899|ref|XP_002989132.1|",{"$nulls":4},{"v":0.076262202737163,"d":"0.08"},{"v":0,"d":"0.00"},{"v":0.0271731430269562,"d":"0.03"},{"v":0.0633782133612267,"d":"0.06"}]
["g34857.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|50878384|gb|AAT85159.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0366505093957337,"d":"0.04"},{"v":0.33762122652588,"d":"0.34"},{"v":0.145533904335814,"d":"0.15"},"X"]
["g34875.t1",{"$nulls":10},"gi|405973085|gb|EKC37817.1|",null,null,"x","x",{"v":0.459851448296201,"d":"0.46"},{"v":0.0858095187068593,"d":"0.09"},{"v":0.1186313405771,"d":"0.12"},{"v":0,"d":"0.00"}]
["g34901.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.035284841489719,"d":"0.04"},{"v":0.18903637197191,"d":"0.19"},{"v":0,"d":"0.00"},"X",null,"X"]
["g34908.t1",null,null,5829,null,null,"cytosol","ARATHwo_AT4G09670.1","Oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: Glyceraldehyde-3-phosphate dehydrogenase-like family protein (TAIR:AT1G34200.1); Has 17148 Blast hits to 17147 proteins in 2160 species: Archae - 344; Bacteria - 12203; Metazoa - 250; Fungi - 605; Plants - 99; Viruses - 0; Other Eukaryotes - 3647 (source: NCBI BLink).","sp|Q9SZ83|Y4967_ARATH","Uncharacterized oxidoreductase At4g09670","gi|225468829|ref|XP_002265072.1|",null,"x","x","x",{"v":42.2294157002878,"d":"42.23"},{"v":44.5548701138703,"d":"44.55"},{"v":22.4983049678984,"d":"22.50"},{"v":2.56298206471199,"d":"2.56"}]
["g34925.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.298972792887318,"d":"0.30"},{"v":0.057368016676659,"d":"0.06"},{"v":0.0827587433876383,"d":"0.08"}]
["g72064.t1",{"$nulls":19},"X",null,"X"]
["g34953.t5",{"$nulls":10},"gi|548862718|gb|ERN20076.1|",{"$nulls":4},{"v":16.8926278682492,"d":"16.89"},{"v":25.5337893901414,"d":"25.53"},{"v":46.1042478167763,"d":"46.10"},{"v":21.1925438292258,"d":"21.19"}]
["g34962.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a"]
["g34985.t1"]
["g35002.t1",{"$nulls":6},"ARATHwo_AT4G02900.1","ERD (early-responsive to dehydration stress) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1474 Blast hits to 1292 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 189; Fungi - 715; Plants - 435; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).","sp|Q9SY14|CSCL2_ARATH","CSC1-like protein At4g02900","gi|720067246|ref|XP_010276749.1|",{"$nulls":4},{"v":1.68917153506195,"d":"1.69"},{"v":5.98152229949067,"d":"5.98"},{"v":4.43504483565862,"d":"4.44"},{"v":12.066079487046,"d":"12.07"}]
["g35014.t1",{"$nulls":10},"gi|502630619|ref|WP_012867241.1|",{"$nulls":4},{"v":0.406000400330634,"d":"0.41"},{"v":0,"d":"0.00"},{"v":0.315051942890611,"d":"0.32"},{"v":0,"d":"0.00"},null,"X"]
["g35030.t1",{"$nulls":20},"X","X"]
["g35045.t1",9225,"0008460:0050662",null,"nucleotide-sugar metabolic process","dTDP-glucose 4,6-dehydratase activity:coenzyme binding",null,"ARATHwo_AT1G78570.1","Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli.","sp|Q9SYM5|RHM1_ARATH","Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1","gi|729326012|ref|XP_010535018.1|",null,null,"x","x",{"v":14.913019712558,"d":"14.91"},{"v":21.0689050451323,"d":"21.07"},{"v":7.08688844511095,"d":"7.09"},{"v":2.22929329076292,"d":"2.23"}]
["g36228.t1",null,16829,5739,null,"lyase activity","mitochondrion","ARATHwo_AT2G26800.2","Mutant has increased seed ile, leu and val as well as his and arg.","sp|O81027|HMGCL_ARATH","Hydroxymethylglutaryl-CoA lyase, mitochondrial","gi|212721474|ref|NP_001132253.1|",{"$nulls":4},{"v":3.71428668392077,"d":"3.71"},{"v":10.3308390650903,"d":"10.33"},{"v":23.6317576019024,"d":"23.63"},{"v":10.0074451713839,"d":"10.01"},null,"X"]
["g36244.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|115479893|ref|NP_001063540.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0829398937476695,"d":"0.08"},{"v":0,"d":"0.00"},"X"]
["g36533.t1",{"$nulls":10},"gi|242826075|ref|XP_002488568.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0403427011231997,"d":"0.04"},{"v":0.160503694992889,"d":"0.16"},{"v":0.0572331730240323,"d":"0.06"},"X"]
["g36548.t1",{"$nulls":6},"ARATHwo_AT3G44100.1","MD-2-related lipid recognition domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT3G11780.1); Has 286 Blast hits to 286 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 123; Plants - 124; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).","sp|Q9C0X9|NPC2_SCHPO","Phosphatidylglycerol/phosphatidylinositol transfer protein","gi|674239557|gb|KFK32322.1|",null,"x","x","x",{"v":11.5631629832472,"d":"11.56"},{"v":33.013178688009,"d":"33.01"},{"v":11.2201181717093,"d":"11.22"},{"v":0.393470820882742,"d":"0.39"}]
["g36566.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.170998158789537,"d":"0.17"},{"v":0.068158696964488,"d":"0.07"}]
["g36583.t1"]
["g36601.t1",{"$nulls":19},"X",null,"X"]
["g36618.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT5G61550.2","U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).","sp|Q9FKG6|PUB52_ARATH","U-box domain-containing protein 52","gi|242094614|ref|XP_002437797.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":2.54603240325779,"d":"2.55"},{"v":0.483217080011504,"d":"0.48"},{"v":0,"d":"0.00"}]
["g36273.t1",{"$nulls":8},"sp|Q9QZM6|NCKX1_RAT","Sodium/potassium/calcium exchanger 1",{"$nulls":5},{"v":0.520591709891165,"d":"0.52"},{"v":67.8406120818894,"d":"67.84"},{"v":102.901420584717,"d":"102.90"},{"v":0,"d":"0.00"},null,"X"]
["g36291.t1",{"$nulls":6},"ARATHwo_AT1G13900.1","Encodes a dual-localized acid phosphatase (mitochondria and chloroplast) that modulates carbon metabolism.","sp|Q9LMG7|PPA2_ARATH","Probable inactive purple acid phosphatase 2","gi|586671101|ref|XP_006837083.1|",{"$nulls":4},{"v":0.752336938782717,"d":"0.75"},{"v":2.53055237691641,"d":"2.53"},{"v":1.73198601020475,"d":"1.73"},{"v":1.50142369234403,"d":"1.50"}]
["g36297.t1",{"$nulls":6},"ARATHwo_AT4G34150.1","Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: soybean gene regulated by cold-2 (TAIR:AT1G09070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|255555333|ref|XP_002518703.1|",null,null,"x","x",{"v":16.5355370170205,"d":"16.54"},{"v":6.70436372504306,"d":"6.70"},{"v":9.9086551425236,"d":"9.91"},{"v":1.17070832189117,"d":"1.17"}]
["g36325.t1","0008152:0009416",null,44424,"metabolic process:response to light stimulus",null,"intracellular part","ARATHwo_AT4G37470.1","HTL belonging to the alpha/beta fold hydrolase superfamily. Mutant and over-expression studies indicates its involvement in seedling de-etiolation process.","sp|Q9SZU7|KAI2_ARATH","Probable esterase KAI2","gi|611963677|gb|AHW84478.1|",null,"x","x","x",{"v":17.3319962571459,"d":"17.33"},{"v":4.17533725393469,"d":"4.18"},{"v":7.95080503816487,"d":"7.95"},{"v":1.80663588003933,"d":"1.81"}]
["g36343.t1",{"$nulls":8},"sp|P31623|POL_JSRV","Pol polyprotein","gi|813213903|dbj|GAO47244.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.169518395002381,"d":"0.17"},{"v":0.860365847983155,"d":"0.86"},{"v":0.152820839419293,"d":"0.15"},null,"X"]
["g36360.t1","0006979:0006511:0055114:0051788:0080129:0009853","0008270:0051537:0008137",5747,"response to oxidative stress:ubiquitin-dependent protein catabolic process:oxidation-reduction process:response to misfolded protein:proteasome core complex assembly:photorespiration","zinc ion binding:2 iron, 2 sulfur cluster binding:NADH dehydrogenase (ubiquinone) activity","mitochondrial respiratory chain complex I","ARATHwo_AT4G02580.1","NADH-ubiquinone oxidoreductase 24 kDa subunit, putative; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, zinc ion binding; INVOLVED IN: response to oxidative stress, mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), NADH:ubiquinone oxidoreductase, 24kDa subunit (InterPro:IPR002023), Thioredoxin-like fold (InterPro:IPR012336); Has 5564 Blast hits to 5564 proteins in 1535 species: Archae - 26; Bacteria - 3396; Metazoa - 195; Fungi - 114; Plants - 49; Viruses - 0; Other Eukaryotes - 1784 (source: NCBI BLink).","sp|O22769|NDUV2_ARATH","NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial","gi|302758780|ref|XP_002962813.1|",null,"x","x","x",{"v":11.260100880659,"d":"11.26"},{"v":24.8374287525274,"d":"24.84"},{"v":11.8026713860444,"d":"11.80"},{"v":6.2485307583701,"d":"6.25"}]
["g36375.t1",{"$nulls":10},"gi|923854260|ref|XP_013704502.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.175798511810916,"d":"0.18"},{"v":0,"d":"0.00"},null,"X"]
["g36383.t1",{"$nulls":8},"sp|Q8ILR9|YPF17_PLAF7","Protein PF14_0175"]
["g36406.t1"]
["g36424.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":5},"gi|629659225|ref|XP_007804385.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0795952139999737,"d":"0.08"},{"v":0,"d":"0.00"},"X"]
["g36441.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|657989954|ref|XP_008387198.1|",{"$nulls":4},{"v":0.0356642653844371,"d":"0.04"},{"v":0.190776545938206,"d":"0.19"},{"v":0.792645048788059,"d":"0.79"},{"v":0.599161999266509,"d":"0.60"},null,"X"]
["g36459.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|657997735|ref|XP_008391257.1|",{"$nulls":4},{"v":0.0742717684277544,"d":"0.07"},{"v":0.820109360727364,"d":"0.82"},{"v":3.99775938697126,"d":"4.00"},{"v":2.0263957587898,"d":"2.03"},null,"X"]
["g36471.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0145065784378534,"d":"0.01"},{"v":0.0197954224576403,"d":"0.02"},{"v":0,"d":"0.00"},null,"X"]
["g36492.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|861600456|gb|KMQ83693.1|",{"$nulls":4},{"v":3.17233100830946,"d":"3.17"},{"v":3.02786604221561,"d":"3.03"},{"v":7.90762635366787,"d":"7.91"},{"v":6.99227855982057,"d":"6.99"},null,"X"]
["g36510.t1",{"$nulls":15},{"v":2.20773539664227,"d":"2.21"},{"v":0.427039340727957,"d":"0.43"},{"v":0.559650748661941,"d":"0.56"},{"v":0,"d":"0.00"}]
["g36527.t1"]
["g36634.t1",{"$nulls":8},"sp|Q5U538|HARB1_XENLA","Putative nuclease HARBI1","gi|557332538|ref|XP_006039066.1|",{"$nulls":9},"X"]
["g36903.t2",{"$nulls":6},"ARATHwo_AT5G11040.1","Encodes a tethering factor required for cell plate biogenesis.","sp|Q9FY61|TR120_ARATH","Trafficking protein particle complex II-specific subunit 120 homolog","gi|604321871|gb|EYU32375.1|",null,null,"x","x",{"v":1.92928630801088,"d":"1.93"},{"v":4.05241738845578,"d":"4.05"},{"v":3.13754650215237,"d":"3.14"},{"v":0.910795069362217,"d":"0.91"}]
["g36906.t1",32259,8168,null,"methylation","methyltransferase activity",{"$nulls":5},"gi|168009481|ref|XP_001757434.1|",null,null,"x","x",{"v":1.35931742651996,"d":"1.36"},{"v":1.64118624441279,"d":"1.64"},{"v":2.64441391327931,"d":"2.64"},{"v":1.00214513488163,"d":"1.00"}]
["g36924.t1",{"$nulls":6},"ARATHwo_AT1G18720.1","Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).","sp|P25338|YGB0_YEAST","Uncharacterized endoplasmic reticulum membrane protein YGL010W","gi|590668100|ref|XP_007037398.1|",null,"x","x","x",{"v":16.8286022053249,"d":"16.83"},{"v":8.42598411528473,"d":"8.43"},{"v":6.19525103784826,"d":"6.20"},{"v":3.74680117540827,"d":"3.75"}]
["g36941.t1",6208,16812,"0016023:0012505","pyrimidine nucleobase catabolic process","hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","cytoplasmic membrane-bounded vesicle:endomembrane system",null,null,"sp|Q1AS71|ALLB_RUBXD","Allantoinase","gi|302764042|ref|XP_002965442.1|",{"$nulls":4},{"v":2.40378707649844,"d":"2.40"},{"v":0.797117560970736,"d":"0.80"},{"v":2.34190614032254,"d":"2.34"},{"v":0,"d":"0.00"}]
["g36957.t1",{"$nulls":6},"ARATHwo_AT4G29780.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).",{"$nulls":11},"X"]
["g36975.t1",{"$nulls":19},"X",null,"X"]
["g36993.t1","0006006:0055114","0016620:0051287:0050661",9507,"glucose metabolic process:oxidation-reduction process","oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor:NAD binding:NADP binding","chloroplast","ARATHwo_AT1G13440.1","glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2); FUNCTIONS IN: copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1); Has 25382 Blast hits to 25370 proteins in 6374 species: Archae - 87; Bacteria - 10988; Metazoa - 2357; Fungi - 2864; Plants - 3864; Viruses - 0; Other Eukaryotes - 5222 (source: NCBI BLink).","sp|Q96UF2|G3P2_MUCCL","Glyceraldehyde-3-phosphate dehydrogenase 2","gi|18073145|emb|CAC80380.1|",null,"x",null,"x",{"v":12.56793103458,"d":"12.57"},{"v":0.78782892339305,"d":"0.79"},{"v":0.227048595243189,"d":"0.23"},{"v":12.1989289787267,"d":"12.20"}]
["g36657.t2",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.05590517879154,"d":"0.06"},{"v":0.300975302391922,"d":"0.30"},{"v":0.0684685115375304,"d":"0.07"}]
["g36674.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0272425699578029,"d":"0.03"},{"v":0.036474657244238,"d":"0.04"},{"v":0,"d":"0.00"}]
["g36691.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|731402872|ref|XP_010654826.1|",{"$nulls":9},"X"]
["g36709.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0581292591836549,"d":"0.06"},{"v":0.110462334627854,"d":"0.11"},{"v":0.160755905275754,"d":"0.16"},null,"X","X"]
["g36728.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.163111847320488,"d":"0.16"},{"v":0,"d":"0.00"}]
["g36740.t1"]
["g36758.t1",9987,4672,null,"cellular process","protein kinase activity",null,"ARATHwo_AT1G54960.1","member of MEKK subfamily","sp|Q9FZ36|M3K2_ARATH","Mitogen-activated protein kinase kinase kinase 2","gi|357482867|ref|XP_003611720.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.195265208746781,"d":"0.20"},{"v":0,"d":"0.00"},{"v":1.0269231194232,"d":"1.03"}]
["g36773.t1",9987,16301,null,"cellular process","kinase activity",null,"ARATHwo_AT3G06030.1","NPK1-related protein kinase 3","sp|O22042|M3K3_ARATH","Mitogen-activated protein kinase kinase kinase 3","gi|590626305|ref|XP_007026132.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":3.1876641337665,"d":"3.19"}]
["g36791.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P31795|POL_MLVRK","Pol polyprotein","gi|923898139|ref|XP_013719648.1|",{"$nulls":9},"X"]
["g36815.t1",null,43167,null,null,"ion binding",null,"ARATHwo_AT5G17770.1","Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.","sp|P17571|NIA1_MAIZE","Nitrate reductase [NADH]","gi|802634829|ref|XP_012078157.1|",{"$nulls":4},{"v":0.35010717956086,"d":"0.35"},{"v":0.373264430192703,"d":"0.37"},{"v":0.348520605565929,"d":"0.35"},{"v":1.55048613996974,"d":"1.55"}]
["g36824.t1",{"$nulls":20},"X","X"]
["g36842.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.898712807034865,"d":"0.90"},{"v":0.0704635256771847,"d":"0.07"},"X",null,"X"]
["g36858.t1",{"$nulls":20},"X","X"]
["g36874.t1",{"$nulls":15},{"v":0.0378334285069793,"d":"0.04"},{"v":0.0803308983094543,"d":"0.08"},{"v":0.0956654753379416,"d":"0.10"},{"v":0,"d":"0.00"},"X",null,"X"]
["g36886.t1",{"$nulls":10},"gi|817218937|ref|XP_012285261.1|",{"$nulls":4},{"v":0.0479320463828986,"d":"0.05"},{"v":0.792307415794843,"d":"0.79"},{"v":0.213766030875254,"d":"0.21"},{"v":1.70107935108783,"d":"1.70"}]
["g37006.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0523379459255047,"d":"0.05"},{"v":0,"d":"0.00"}]
["g37024.t1"]
["g37321.t1",{"$nulls":8},"sp|Q9NXP7|GIN1_HUMAN","Gypsy retrotransposon integrase-like protein 1","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.278787851153991,"d":"0.28"},{"v":0,"d":"0.00"},"X"]
["g37337.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q9UR07|TF211_SCHPO","Transposon Tf2-11 polyprotein","gi|77557165|gb|ABA99961.1|",{"$nulls":4},{"v":0.0136717015288097,"d":"0.01"},{"v":0.132141645800957,"d":"0.13"},{"v":0.672144591658544,"d":"0.67"},{"v":0.218674001174829,"d":"0.22"},null,"X"]
["g37352.t1",{"$nulls":10},"gi|674229542|gb|KFK23327.1|",{"$nulls":4},{"v":0.21805912531572,"d":"0.22"},{"v":0.836270512930997,"d":"0.84"},{"v":1.82118285532217,"d":"1.82"},{"v":6.92864730457511,"d":"6.93"},null,"X"]
["g37373.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|Q9WJR5|POK19_HUMAN","Endogenous retrovirus group K member 19 Pol protein","gi|703157994|ref|XP_010111872.1|",{"$nulls":4},{"v":0.661218105643426,"d":"0.66"},{"v":0.852784124298772,"d":"0.85"},{"v":8.29580197227228,"d":"8.30"},{"v":0.189746652550581,"d":"0.19"},null,"X"]
["g37390.t1",{"$nulls":15},{"v":1.45144660119057,"d":"1.45"},{"v":7.44020270172111,"d":"7.44"},{"v":9.57539571466301,"d":"9.58"},{"v":9.33605922703633,"d":"9.34"}]
["g37043.t1"]
["g37060.t1",{"$nulls":15},{"v":38.4002691779105,"d":"38.40"},{"v":0.134534065056671,"d":"0.13"},{"v":0.752134789056263,"d":"0.75"},{"v":1.07158372487414,"d":"1.07"}]
["g37078.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT4G25160.1","U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT5G61550.1); Has 118360 Blast hits to 115683 proteins in 4597 species: Archae - 135; Bacteria - 13482; Metazoa - 43605; Fungi - 9605; Plants - 33456; Viruses - 341; Other Eukaryotes - 17736 (source: NCBI BLink).","sp|Q9SW11|PUB35_ARATH","U-box domain-containing protein 35","gi|674881357|emb|CDY50937.1|"]
["g37096.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.180972314809469,"d":"0.18"},{"v":0.191790637407351,"d":"0.19"}]
["g37113.t1",15696,8519,16020,"ammonium transport","ammonium transmembrane transporter activity","membrane",null,null,"sp|Q8S230|AMT22_ORYSJ","Ammonium transporter 2 member 2","gi|380862524|gb|AFF18616.1|",{"$nulls":4},{"v":0.0389450158724267,"d":"0.04"},{"v":0.037447299127755,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g37130.t1",{"$nulls":13},"x","x",{"v":5.96087982280407,"d":"5.96"},{"v":9.3479890007435,"d":"9.35"},{"v":7.11127407682316,"d":"7.11"},{"v":6.4258801729776,"d":"6.43"}]
["g37144.t1"]
["g37161.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|861612721|gb|KMQ85528.1|",{"$nulls":4},{"v":0.360492503044224,"d":"0.36"},{"v":2.34136492667306,"d":"2.34"},{"v":13.5457049826502,"d":"13.55"},{"v":4.3949649733065,"d":"4.39"},null,"X"]
["g37166.t1",null,"0005509:0008728:0000166",9507,null,"calcium ion binding:GTP diphosphokinase activity:nucleotide binding","chloroplast","ARATHwo_AT3G17470.1","Ca2+-activated RelA/spot homolog (CRSH); FUNCTIONS IN: GTP diphosphokinase activity, calcium ion binding; INVOLVED IN: guanosine tetraphosphate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 14021 Blast hits to 13962 proteins in 3173 species: Archae - 6; Bacteria - 8120; Metazoa - 1259; Fungi - 992; Plants - 727; Viruses - 0; Other Eukaryotes - 2917 (source: NCBI BLink).","sp|Q84R11|CRSH_ARATH","Probable GTP diphosphokinase CRSH, chloroplastic","gi|168043135|ref|XP_001774041.1|",null,null,"x","x",{"v":6.2393413065492,"d":"6.24"},{"v":3.43314786948756,"d":"3.43"},{"v":3.35588820286009,"d":"3.36"},{"v":9.39650519608702,"d":"9.40"}]
["g37195.t1"]
["g37210.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.192586729634475,"d":"0.19"},{"v":0,"d":"0.00"}]
["g37225.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0442979143807757,"d":"0.04"},{"v":0.54724464875015,"d":"0.55"},{"v":0.0746222002401763,"d":"0.07"},"X"]
["g37242.t1"]
["g37251.t1",{"$nulls":6},"ARATHwo_AT1G49540.2","elongator protein 2 (ELP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1).","sp|F4I1S7|ELP2_ARATH","Elongator complex protein 2","gi|923732912|ref|XP_013668695.1|",{"$nulls":4},{"v":0.625161150956946,"d":"0.63"},{"v":0.896756762742812,"d":"0.90"},{"v":1.1831156640642,"d":"1.18"},{"v":1.01062095350259,"d":"1.01"},null,"X"]
["g37278.t1",{"$nulls":10},"gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0939228418212029,"d":"0.09"},{"v":2.12656367400878,"d":"2.13"},{"v":0.120331547442124,"d":"0.12"},"X"]
["g37279.t1",{"$nulls":13},"x","x",{"v":4.39448816413879,"d":"4.39"},{"v":17.3539729091919,"d":"17.35"},{"v":7.74200855036679,"d":"7.74"},{"v":21.6752400246398,"d":"21.68"}]
["g37296.t1",{"$nulls":8},"sp|Q9Y6F7|CDY2_HUMAN","Testis-specific chromodomain protein Y 2","gi|472580248|gb|EMS18080.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0294647794842222,"d":"0.03"},{"v":0.0728387071341914,"d":"0.07"},{"v":0,"d":"0.00"},"X"]
["g37313.t1"]
["g37425.t1",{"$nulls":15},{"v":8.21122674755991,"d":"8.21"},{"v":8.07451807442103,"d":"8.07"},{"v":6.2092406112713,"d":"6.21"},{"v":2.61588525972274,"d":"2.62"}]
["g37670.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923851487|ref|XP_013704088.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.146029388002112,"d":"0.15"},{"v":0.274242014138595,"d":"0.27"},{"v":0.090562092656347,"d":"0.09"},"X"]
["g37688.t1",{"$nulls":19},"X",null,"X"]
["g37704.t1",{"$nulls":13},"x","x",{"v":11.6595464972458,"d":"11.66"},{"v":13.8552141030375,"d":"13.86"},{"v":10.7924063656962,"d":"10.79"},{"v":1.28156009276857,"d":"1.28"}]
["g37721.t1",{"$nulls":6},"ARATHwo_AT5G53080.1","Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q7Z494|NPHP3_HUMAN","Nephrocystin-3","gi|916853675|ref|WP_051460731.1|",{"$nulls":4},{"v":6.31062495662714,"d":"6.31"},{"v":10.9018189577233,"d":"10.90"},{"v":12.0733391429649,"d":"12.07"},{"v":6.14319828941869,"d":"6.14"}]
["g37440.t1","0010048:0010077:0009911:0043481:0006355:0000060:0048481","0016491:0046983:0003677:0003700:0008134","0005737:0005634","vernalization response:maintenance of inflorescence meristem identity:positive regulation of flower development:anthocyanin accumulation in tissues in response to UV light:regulation of transcription, DNA-dependent:protein import into nucleus, translocation:ovule development","oxidoreductase activity:protein dimerization activity:DNA binding:sequence-specific DNA binding transcription factor activity:transcription factor binding","cytoplasm:nucleus","ARATHwo_AT2G14210.1","MADS box gene, transcription factor","sp|Q9SI38|ANR1_ARATH","MADS-box transcription factor ANR1","gi|57999634|dbj|BAD88437.1|",{"$nulls":4},{"v":5.29670812194999,"d":"5.30"},{"v":0.889476328606076,"d":"0.89"},{"v":1.4637250115501,"d":"1.46"},{"v":0.103332001853331,"d":"0.10"}]
["g37444.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|672158093|ref|XP_008798775.1|",{"$nulls":8},"X"]
["g37460.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.161521620598669,"d":"0.16"},{"v":0,"d":"0.00"}]
["g37478.t1",null,5488,null,null,"binding",null,"ARATHwo_AT2G41835.1","zinc finger (C2H2 type, AN1-like) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type, AN1-like) family protein (TAIR:AT3G57480.1); Has 760 Blast hits to 744 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 122; Plants - 83; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).","sp|Q8VZ42|SAP11_ARATH","Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11","gi|122069714|sp|Q0D5B9.2|SAP16_ORYSJ",null,null,"x","x",{"v":10.4788097958863,"d":"10.48"},{"v":8.25117376140738,"d":"8.25"},{"v":5.51940059517343,"d":"5.52"},{"v":2.52390667854564,"d":"2.52"}]
["g37494.t1",6259,"0046872:0003824",null,"DNA metabolic process","metal ion binding:catalytic activity",{"$nulls":5},"gi|661175376|emb|CDH61339.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.029084764950546,"d":"0.03"},{"v":1.7259191143363,"d":"1.73"},{"v":0.252502411508827,"d":"0.25"},null,"X"]
["g37511.t1",{"$nulls":10},"gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.137743657318697,"d":"0.14"},{"v":0,"d":"0.00"},"X"]
["g37530.t1",{"$nulls":6},"ARATHwo_AT2G17390.1","Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.","sp|Q9SAR5|AKR2A_ARATH","Ankyrin repeat domain-containing protein 2A","gi|823262307|ref|XP_012463900.1|",null,"x","x","x",{"v":248.540761788528,"d":"248.54"},{"v":164.351628110954,"d":"164.35"},{"v":55.8870203382911,"d":"55.89"},{"v":121.028951055398,"d":"121.03"}]
["g37547.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0334582053351083,"d":"0.03"},{"v":0.11436646210316,"d":"0.11"},{"v":0,"d":"0.00"},null,"X","X"]
["g37564.t1",{"$nulls":6},"ARATHwo_AT5G05170.1","Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening. The xylem cells in primary root have reduced cell expansion and higher than normal lignification.","sp|P0C2F6|RNHX1_ARATH","Putative ribonuclease H protein At1g65750","gi|702514938|ref|XP_010041623.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.10630470280853,"d":"0.11"},{"v":0,"d":"0.00"}]
["g37580.t1",{"$nulls":15},{"v":4.37179740216218,"d":"4.37"},{"v":1.87905259076947,"d":"1.88"},{"v":0.639094774085936,"d":"0.64"},{"v":1.14064621397958,"d":"1.14"}]
["g37597.t1",{"$nulls":10},"gi|923893774|ref|XP_013717797.1|",{"$nulls":4},{"v":7.10764173259185,"d":"7.11"},{"v":7.31418656093743,"d":"7.31"},{"v":13.3516777441334,"d":"13.35"},{"v":8.15982002950957,"d":"8.16"},null,"X"]
["g37617.t1",{"$nulls":6},"ARATHwo_AT2G44670.1","Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT4G17670.1); Has 521 Blast hits to 521 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 521; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|802790673|ref|XP_012092211.1|",null,null,"x","x",{"v":29.4702803667048,"d":"29.47"},{"v":3.59377212747941,"d":"3.59"},{"v":8.92718097253634,"d":"8.93"},{"v":6.07446010327465,"d":"6.07"}]
["g37630.t1",398,"0017069:0000166",null,"mRNA splicing, via spliceosome","snRNA binding:nucleotide binding",null,"ARATHwo_AT1G76940.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding (TAIR:AT1G21320.2); Has 631 Blast hits to 628 proteins in 151 species: Archae - 0; Bacteria - 4; Metazoa - 278; Fungi - 177; Plants - 131; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).","sp|A1A6K6|NSRA_ARATH","Nuclear speckle RNA-binding protein A","gi|168024982|ref|XP_001765014.1|",null,"x","x","x",{"v":53.9794395717515,"d":"53.98"},{"v":47.2697572775988,"d":"47.27"},{"v":34.632652312682,"d":"34.63"},{"v":10.8090696401611,"d":"10.81"}]
["g37647.t1",{"$nulls":13},"x","x",{"v":7.19600712691765,"d":"7.20"},{"v":2.20903970787731,"d":"2.21"},{"v":3.32601579365258,"d":"3.33"},{"v":3.22457524131083,"d":"3.22"}]
["g37662.t1","0006413:0016556",3743,null,"translational initiation:mRNA modification","translation initiation factor activity",null,"ARATHwo_AT1G01320.1","Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G28080.1); Has 12123 Blast hits to 4846 proteins in 494 species: Archae - 106; Bacteria - 3214; Metazoa - 4973; Fungi - 1823; Plants - 555; Viruses - 79; Other Eukaryotes - 1373 (source: NCBI BLink).","sp|F4JKH6|TSS_ARATH","Protein TSS","gi|548856270|gb|ERN14126.1|",{"$nulls":4},{"v":1.85162542818895,"d":"1.85"},{"v":4.61100854864377,"d":"4.61"},{"v":2.71455715541098,"d":"2.71"},{"v":11.5197432174991,"d":"11.52"}]
["g37750.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_AT3G55005.1","Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1B appears to be redundant with TON1A. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1B associates with plant centrin CEN1.","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923824975|ref|XP_013695570.1|",{"$nulls":4},{"v":1.9905581848597,"d":"1.99"},{"v":9.77784071520107,"d":"9.78"},{"v":7.87508638299265,"d":"7.88"},{"v":0.984525910730531,"d":"0.98"},null,"X"]
["g38013.t1",null,4721,null,null,"phosphoprotein phosphatase activity",null,"ARATHwo_AT4G31750.1","Encodes HopW1-1-Interacting protein 2 (WIN2). Interacts with the P. syringae effector HopW1-1. WIN2 has protein phosphatase activity. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).","sp|Q8RXV3|P2C59_ARATH","Probable protein phosphatase 2C 59","gi|116789173|gb|ABK25144.1|",null,null,"x","x",{"v":59.1999145280889,"d":"59.20"},{"v":25.3688048749295,"d":"25.37"},{"v":26.1750671125493,"d":"26.18"},{"v":26.185276017321,"d":"26.19"}]
["g38023.t1"]
["g38040.t1",null,4672,null,null,"protein kinase activity",null,"ARATHwo_AT5G54380.1","Encodes THESEUS1 (THE1), a receptor kinase regulated by Brassinosteroids and required for cell elongation during vegetative growth.","sp|Q9LK35|THE1_ARATH","Receptor-like protein kinase THESEUS 1","gi|604304166|gb|EYU23499.1|",{"$nulls":4},{"v":0.896219296194774,"d":"0.90"},{"v":10.8616655849716,"d":"10.86"},{"v":5.19843783950671,"d":"5.20"},{"v":2.23104574811222,"d":"2.23"}]
["g38055.t1",{"$nulls":6},"ARATHwo_AT1G43760.1","DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G40390.1); Has 1816 Blast hits to 1744 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 164; Fungi - 4; Plants - 1633; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|141475|sp|P14381.1|YTX2_XENLA",{"$nulls":9},"X"]
["g38071.t1","0044260:0090304",5488,null,"cellular macromolecule metabolic process:nucleic acid metabolic process","binding",{"$nulls":3},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0243618766764696,"d":"0.02"},{"v":0.04701613019666,"d":"0.05"},{"v":0.182170643443221,"d":"0.18"},{"v":0,"d":"0.00"},"X"]
["g38079.t1",null,null,16020,null,null,"membrane","ARATHwo_AT1G70330.1","encodes an adenosine transporter that catalyze a proton-dependent adenosine transport.","sp|Q8VXY7|ENT1_ARATH","Equilibrative nucleotide transporter 1","gi|168011324|ref|XP_001758353.1|",{"$nulls":4},{"v":0.189123724095668,"d":"0.19"},{"v":0.0782604512569797,"d":"0.08"},{"v":0.115120982794762,"d":"0.12"},{"v":0.336598742341517,"d":"0.34"}]
["g38104.t1",{"$nulls":13},"x","x",{"v":4.49766073208461,"d":"4.50"},{"v":7.33505377426109,"d":"7.34"},{"v":6.5381225736924,"d":"6.54"},{"v":16.8510557445655,"d":"16.85"}]
["g37784.t1","0043170:0044238",null,16020,"macromolecule metabolic process:primary metabolic process",null,"membrane",null,null,"sp|Q82851|POL_JEMBR","Gag-Pol polyprotein","gi|923854260|ref|XP_013704502.1|",{"$nulls":4},{"v":0.103040064054688,"d":"0.10"},{"v":0.962249869289327,"d":"0.96"},{"v":8.08645994269319,"d":"8.09"},{"v":1.84332105410014,"d":"1.84"},"X"]
["g37801.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0222322058124799,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.0577858933792863,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g37817.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|55168131|gb|AAV43998.1|",{"$nulls":4},{"v":0.0187990101110185,"d":"0.02"},{"v":0.329654490598106,"d":"0.33"},{"v":2.24613442957674,"d":"2.25"},{"v":0.506138945104944,"d":"0.51"},"X"]
["g37831.t1",{"$nulls":8},"sp|Q5R7G1|NRIP3_PONAB","Nuclear receptor-interacting protein 3",{"$nulls":5},{"v":0.0870163159757142,"d":"0.09"},{"v":0.487475504361951,"d":"0.49"},{"v":2.79866691909558,"d":"2.80"},{"v":1.2013392861876,"d":"1.20"},"X"]
["g37853.t1",{"$nulls":13},"x","x",{"v":4.2097122313588,"d":"4.21"},{"v":6.42247678804238,"d":"6.42"},{"v":11.5493365163646,"d":"11.55"},{"v":3.84218687634504,"d":"3.84"}]
["g37870.t1"]
["g37888.t1",{"$nulls":15},{"v":0.137957343378226,"d":"0.14"},{"v":1.50100216091112,"d":"1.50"},{"v":6.66163096363243,"d":"6.66"},{"v":0.75469503803401,"d":"0.75"},"X",null,"X"]
["g37905.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|727638356|ref|XP_010490422.1|",{"$nulls":4},{"v":0.0350688119321336,"d":"0.04"},{"v":0.334888942853256,"d":"0.33"},{"v":0.929557288541347,"d":"0.93"},{"v":0.198397438433087,"d":"0.20"},"X"]
["g37923.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.055176711080183,"d":"0.06"},{"v":0.257326161790298,"d":"0.26"},{"v":0,"d":"0.00"}]
["g37939.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.821529321966442,"d":"0.82"},{"v":0,"d":"0.00"},null,"X","X"]
["g37955.t1",{"$nulls":10},"gi|670444041|ref|XP_008662460.1|",{"$nulls":4},{"v":6.82337371572591,"d":"6.82"},{"v":2.87030068337989,"d":"2.87"},{"v":10.4606257863216,"d":"10.46"},{"v":1.9620281565299,"d":"1.96"}]
["g37973.t1",{"$nulls":8},"sp|Q54K11|GRLR_DICDI","Metabotropic glutamate receptor-like protein R","gi|647304284|ref|WP_025745621.1|",{"$nulls":4},{"v":6.86857675436273,"d":"6.87"},{"v":0.740243634583193,"d":"0.74"},{"v":1.63576036388507,"d":"1.64"},{"v":0.13317528835358,"d":"0.13"}]
["g37989.t1","0042221:0016192:0044765:0044767:0009987",5515,"0043231:0044425:0012505:0044444","response to chemical stimulus:vesicle-mediated transport:single-organism transport:single-organism developmental process:cellular process","protein binding","intracellular membrane-bounded organelle:membrane part:endomembrane system:cytoplasmic part",null,null,"sp|O88307|SORL_MOUSE","Sortilin-related receptor","gi|148695088|gb|EDL27035.1|",{"$nulls":4},{"v":1.22433020565958,"d":"1.22"},{"v":2.1787958857135,"d":"2.18"},{"v":0.457375401753141,"d":"0.46"},{"v":0,"d":"0.00"}]
["g38006.t1",{"$nulls":6},"ARATHwo_AT4G22910.1","FIZZY-related 2 (FZR2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: trichome branching, signal transduction, DNA endoreduplication, cell growth; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: cell cycle switch protein 52 A2 (TAIR:AT4G11920.1); Has 43458 Blast hits to 22953 proteins in 693 species: Archae - 46; Bacteria - 6865; Metazoa - 16440; Fungi - 9775; Plants - 5102; Viruses - 0; Other Eukaryotes - 5230 (source: NCBI BLink).","sp|Q8L3Z8|FZR2_ARATH","Protein FIZZY-RELATED 2","gi|302815544|ref|XP_002989453.1|",null,null,"x","x",{"v":2.59911436065113,"d":"2.60"},{"v":5.87440708588326,"d":"5.87"},{"v":7.69038574951191,"d":"7.69"},{"v":4.74325829959573,"d":"4.74"}]
["g38110.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",null,null,"gi|297823363|ref|XP_002879564.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0572359145570485,"d":"0.06"},{"v":0,"d":"0.00"}]
["g38124.t1",{"$nulls":10},"gi|168027573|ref|XP_001766304.1|"]
["g38562.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|77556709|gb|ABA99505.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.234925384774977,"d":"0.23"},{"v":0.297734348126459,"d":"0.30"},{"v":0.219361151236735,"d":"0.22"},"X"]
["g38579.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.246135589365443,"d":"0.25"},{"v":0,"d":"0.00"},"X",null,"X"]
["g38595.t1",{"$nulls":10},"gi|743936538|ref|XP_011012660.1|",{"$nulls":4},{"v":0.344536923985107,"d":"0.34"},{"v":0.364652933075869,"d":"0.36"},{"v":0.484856406428516,"d":"0.48"},{"v":0.710355910862721,"d":"0.71"}]
["g38618.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|661185511|emb|CDH52155.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0246606423184537,"d":"0.02"},{"v":0.0980519178378773,"d":"0.10"},{"v":0,"d":"0.00"},"X"]
["g38629.t1",{"$nulls":8},"sp|Q96UX3|KAPR_ASPFU","cAMP-dependent protein kinase regulatory subunit","gi|873222373|emb|CEM31310.1|",{"$nulls":4},{"v":0.0391284257110568,"d":"0.04"},{"v":0.037619676678518,"d":"0.04"},{"v":9.01329832951308,"d":"9.01"},{"v":0,"d":"0.00"}]
["g38645.t1",{"$nulls":6},"ARATHwo_AT5G42020.1","Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei.","sp|Q1QRU1|DNAK_NITHX","Chaperone protein DnaK","gi|3169851|gb|AAC33426.1|",null,null,"x","x",{"v":0.158671088889949,"d":"0.16"},{"v":4.14595420942521,"d":"4.15"},{"v":0.272147062890793,"d":"0.27"},{"v":0.631345790428419,"d":"0.63"}]
["g38663.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|765123350|ref|XP_011474692.1|",{"$nulls":4},{"v":0.0356642653844371,"d":"0.04"},{"v":0.163409760971082,"d":"0.16"},{"v":0.617139284631225,"d":"0.62"},{"v":0.169456033463781,"d":"0.17"},null,"X"]
["g38139.t1",null,null,"0005634:0005829:0005886",null,null,"nucleus:cytosol:plasma membrane","ARATHwo_AT4G11860.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G22960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6PDI6|FA63B_MOUSE","Protein FAM63B","gi|302755782|ref|XP_002961315.1|",null,null,"x","x",{"v":5.38407128227845,"d":"5.38"},{"v":0.971092460236602,"d":"0.97"},{"v":4.55260654766336,"d":"4.55"},{"v":1.42643797194751,"d":"1.43"}]
["g38164.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|688559892|ref|XP_009300611.1|",{"$nulls":8},"X"]
["g38172.t1","0016070:0032259",8168,null,"RNA metabolic process:methylation","methyltransferase activity",null,"ARATHwo_AT5G15390.1","tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 11780 Blast hits to 11778 proteins in 2508 species: Archae - 10; Bacteria - 9274; Metazoa - 151; Fungi - 61; Plants - 151; Viruses - 0; Other Eukaryotes - 2133 (source: NCBI BLink).","sp|O51081|Y052_BORBU","Putative tRNA/rRNA methyltransferase BB_0052","gi|302804009|ref|XP_002983757.1|",null,null,"x","x",{"v":7.60254303526825,"d":"7.60"},{"v":5.1084162478448,"d":"5.11"},{"v":2.6013240478623,"d":"2.60"},{"v":2.65803907176245,"d":"2.66"}]
["g38188.t1",8152,"0003676:0005524:0004386",null,"metabolic process","nucleic acid binding:ATP binding:helicase activity",null,"ARATHwo_AT2G47330.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink).","sp|Q755N4|DBP2_ASHGO","ATP-dependent RNA helicase DBP2","gi|302753758|ref|XP_002960303.1|",null,null,"x","x",{"v":4.25621574854843,"d":"4.26"},{"v":5.44560911161338,"d":"5.45"},{"v":3.44990470077104,"d":"3.45"},{"v":10.8538305469791,"d":"10.85"}]
["g38205.t1",{"$nulls":13},"x","x",{"v":62.4385126084158,"d":"62.44"},{"v":83.3984523173906,"d":"83.40"},{"v":68.6032448740068,"d":"68.60"},{"v":40.3040049995513,"d":"40.30"}]
["g38221.t1"]
["g38234.t1",{"$nulls":15},{"v":1.36013964115112,"d":"1.36"},{"v":3.89606063748566,"d":"3.90"},{"v":1.22797564781461,"d":"1.23"},{"v":14.7625914761047,"d":"14.76"}]
["g38257.t1",{"$nulls":6},"ARATHwo_AT2G41350.2","Encodes AUG1, likely to be in an augmin-like complex with AUG3.","sp|F4IK01|AUG1_ARATH","AUGMIN subunit 1","gi|302816547|ref|XP_002989952.1|",null,null,"x","x",{"v":5.818418087652,"d":"5.82"},{"v":1.46515386191071,"d":"1.47"},{"v":1.68335513169306,"d":"1.68"},{"v":1.78207710011302,"d":"1.78"}]
["g38273.t1",8152,16874,null,"metabolic process","ligase activity",null,"ARATHwo_AT4G36800.1","RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.","sp|Q9SDY5|RCE1_ARATH","NEDD8-conjugating enzyme Ubc12","gi|302792244|ref|XP_002977888.1|",null,"x","x","x",{"v":64.9543038968704,"d":"64.95"},{"v":38.8043253436478,"d":"38.80"},{"v":47.9285975753992,"d":"47.93"},{"v":153.772957589822,"d":"153.77"}]
["g38291.t1",{"$nulls":10},"gi|595451902|gb|EXX59485.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0719446547801153,"d":"0.07"},{"v":0.586985191897746,"d":"0.59"},{"v":0.245784033975656,"d":"0.25"},"X"]
["g38308.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",null,"ARATHwo_AT1G55325.2","Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation.","sp|F4I096|MED13_ARATH","Mediator of RNA polymerase II transcription subunit 13","gi|923912317|ref|XP_013725862.1|",null,null,"x","x",{"v":1.58740346709458,"d":"1.59"},{"v":1.72529014081551,"d":"1.73"},{"v":1.32499600011002,"d":"1.32"},{"v":1.08766823998263,"d":"1.09"}]
["g38324.t1",{"$nulls":8},"sp|P03359|POL_WMSV","Pol polyprotein","gi|919098672|ref|XP_013385929.1|",{"$nulls":8},"X"]
["g38342.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0724897867805683,"d":"0.07"},{"v":0.241476018711818,"d":"0.24"},{"v":0,"d":"0.00"},"X",null,"X"]
["g38359.t1"]
["g38685.t1",{"$nulls":13},"x","x",{"v":2.56722658870936,"d":"2.57"},{"v":1.60696274123805,"d":"1.61"},{"v":1.58013602598123,"d":"1.58"},{"v":0.296275895270187,"d":"0.30"}]
["g38702.t1",{"$nulls":10},"gi|685309117|ref|XP_009145188.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0268682314969817,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.116803817840351,"d":"0.12"},null,"X"]
["g38926.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.143953419111941,"d":"0.14"},{"v":0.253564589799195,"d":"0.25"},{"v":0,"d":"0.00"}]
["g38948.t1",{"$nulls":6},"ARATHwo_AT4G11400.1","ARID/BRIGHT DNA-binding domain;ELM2 domain protein; FUNCTIONS IN: DNA binding; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain;ELM2 domain protein (TAIR:AT2G46040.1); Has 254 Blast hits to 233 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 4; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|573925320|ref|XP_006650209.1|",{"$nulls":4},{"v":0.948868630453435,"d":"0.95"},{"v":0.891367531151694,"d":"0.89"},{"v":0.880161036963126,"d":"0.88"},{"v":0.893831185296101,"d":"0.89"}]
["g38962.t1",9987,"0046872:0016757",16020,"cellular process","metal ion binding:transferase activity, transferring glycosyl groups","membrane","ARATHwo_AT5G05170.1","Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis. As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening. The xylem cells in primary root have reduced cell expansion and higher than normal lignification.","sp|Q941L0|CESA3_ARATH","Cellulose synthase A catalytic subunit 3 [UDP-forming]","gi|590579636|ref|XP_007013842.1|",{"$nulls":4},{"v":13.0040745365361,"d":"13.00"},{"v":23.560496166551,"d":"23.56"},{"v":10.8423992473386,"d":"10.84"},{"v":4.68152219319884,"d":"4.68"}]
["g38979.t1",{"$nulls":15},{"v":0.337075145999439,"d":"0.34"},{"v":0.607741571179637,"d":"0.61"},{"v":0.159278628006595,"d":"0.16"},{"v":2.53591068635526,"d":"2.54"}]
["g38997.t1",{"$nulls":6},"ARATHwo_AT1G18260.1","Encodes an Arabidopsis homolog of the yeast Hrd3/mammlian Sel1L protein. Involved in ERAD (Endoplasmic reticulum-associated degradation).","sp|A0A0H2VDN9|ESIB_ECOL6","Secretory immunoglobulin A-binding protein EsiB","gi|780075717|ref|WP_045461635.1|",{"$nulls":4},{"v":3.09669652121951,"d":"3.10"},{"v":4.50955449119662,"d":"4.51"},{"v":2.98344151704248,"d":"2.98"},{"v":3.43175702331133,"d":"3.43"}]
["g39013.t1",5982,"0043167:0000166:0016301",44434,"starch metabolic process","ion binding:nucleotide binding:kinase activity","chloroplast part","ARATHwo_AT1G10760.1","Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.","sp|Q8LPT9|GWD1_CITRE","Alpha-glucan water dikinase, chloroplastic","gi|695011158|ref|XP_009392285.1|",{"$nulls":4},{"v":1.80021289886906,"d":"1.80"},{"v":11.3302297945156,"d":"11.33"},{"v":16.5242873086237,"d":"16.52"},{"v":45.8211048086138,"d":"45.82"}]
["g38716.t1","0044763:0050896:0044765",16887,"0016020:0005773","single-organism cellular process:response to stimulus:single-organism transport","ATPase activity","membrane:vacuole","ARATHwo_AT3G59140.1","member of MRP subfamily","sp|Q9LYS2|AB10C_ARATH","ABC transporter C family member 10","gi|168037716|ref|XP_001771349.1|",{"$nulls":4},{"v":0.580312630215556,"d":"0.58"},{"v":0.578890129459716,"d":"0.58"},{"v":10.823774521046,"d":"10.82"},{"v":3.81254075864203,"d":"3.81"},null,"X"]
["g38743.t1",{"$nulls":19},"X",null,"X"]
["g38760.t1",{"$nulls":15},{"v":0.205238473932797,"d":"0.21"},{"v":0.153950112246494,"d":"0.15"},{"v":13.9137741335551,"d":"13.91"},{"v":0,"d":"0.00"}]
["g38777.t1",null,"1901363:0097159",null,null,"heterocyclic compound binding:organic cyclic compound binding",null,"ARATHwo_AT2G01120.2","Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.","sp|Q5N8Q4|ORC4_ORYSJ","Origin of replication complex subunit 4","gi|168032568|ref|XP_001768790.1|",null,null,"x","x",{"v":8.2366786540779,"d":"8.24"},{"v":5.41685005600411,"d":"5.42"},{"v":5.07652244788085,"d":"5.08"},{"v":3.88328050994186,"d":"3.88"}]
["g73562.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|34392578|dbj|BAC82621.1|"]
["g38801.t1",{"$nulls":6},"ARATHwo_AT1G55420.1","embryo sac development arrest 11 (EDA11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55380.1); Has 31248 Blast hits to 2717 proteins in 273 species: Archae - 49; Bacteria - 26496; Metazoa - 873; Fungi - 230; Plants - 1563; Viruses - 57; Other Eukaryotes - 1980 (source: NCBI BLink).","sp|P0C6U3|R1A_CVHN1","Replicase polyprotein 1a","gi|168059844|ref|XP_001781910.1|"]
["g38827.t1",{"$nulls":6},"ARATHwo_AT5G32470.1","Haem oxygenase-like, multi-helical; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C (InterPro:IPR004305); Has 1988 Blast hits to 1985 proteins in 797 species: Archae - 79; Bacteria - 1526; Metazoa - 2; Fungi - 151; Plants - 51; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).","sp|F4KFT7|TENAC_ARATH","Probable aminopyrimidine aminohydrolase, mitochondrial","gi|702447596|ref|XP_010024930.1|",null,null,"x","x",{"v":6.27696684091881,"d":"6.28"},{"v":1.99094829038037,"d":"1.99"},{"v":1.4776620827311,"d":"1.48"},{"v":2.09713513148846,"d":"2.10"}]
["g73591.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.120844150312718,"d":"0.12"},{"v":1.04462296220059,"d":"1.04"},{"v":0,"d":"0.00"},"X",null,"X"]
["g38859.t1",{"$nulls":6},"ARATHwo_AT3G50370.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink).","sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":5},{"v":13.4293765425392,"d":"13.43"},{"v":134.400577091809,"d":"134.40"},{"v":97.3614237851982,"d":"97.36"},{"v":23.3996933966841,"d":"23.40"}]
["g38876.t1",{"$nulls":10},"gi|302814915|ref|XP_002989140.1|"]
["g73617.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":5.02030187340442,"d":"5.02"},{"v":46.2605990946498,"d":"46.26"},{"v":0.662863942833687,"d":"0.66"},"X",null,"X"]
["g38908.t1",{"$nulls":8},"sp|Q9CD87|TAER_MYCLE","Trans-acting enoyl reductase","gi|519022669|ref|WP_020178544.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.173732690710377,"d":"0.17"},{"v":2.29481381797388,"d":"2.29"},{"v":0,"d":"0.00"}]
["g39019.t1",{"$nulls":19},"X",null,"X"]
["g39020.t1",{"$nulls":6},"ARATHwo_AT4G18260.1","Cytochrome b561/ferric reductase transmembrane protein family; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Cytochrome b561/ferric reductase transmembrane protein family (TAIR:AT2G30890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q8GWI5|Y4826_ARATH","Uncharacterized protein At4g18257","gi|545371822|ref|XP_005650439.1|",null,null,"x","x",{"v":5.78122675999059,"d":"5.78"},{"v":3.46021802521168,"d":"3.46"},{"v":3.38530444973778,"d":"3.39"},{"v":6.16146631546351,"d":"6.16"}]
["g39036.t1",{"$nulls":20},"X","X"]
["g39259.t1",{"$nulls":6},"ARATHwo_AT4G15850.1","plant DEAD box-like RNA helicase.","sp|Q7FGZ2|RH1_ARATH","DEAD-box ATP-dependent RNA helicase 1","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":7.31859839051343,"d":"7.32"},{"v":3.84711143076681,"d":"3.85"},{"v":4.3437635047276,"d":"4.34"},{"v":2.96405434375894,"d":"2.96"}]
["g39277.t1"]
["g39295.t1",{"$nulls":10},"gi|926649383|ref|XP_013791148.1|"]
["g39313.t1",6468,"0005524:0004674",null,"protein phosphorylation","ATP binding:protein serine/threonine kinase activity",null,"ARATHwo_AT2G32850.2","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase 3 (TAIR:AT5G08160.1); Has 91647 Blast hits to 90290 proteins in 2701 species: Archae - 81; Bacteria - 10784; Metazoa - 33910; Fungi - 10357; Plants - 19846; Viruses - 210; Other Eukaryotes - 16459 (source: NCBI BLink).","sp|Q54VV7|Y0111_DICDI","Probable serine/threonine-protein kinase DDB_G0280111","gi|302823395|ref|XP_002993350.1|",{"$nulls":4},{"v":7.42760542070657,"d":"7.43"},{"v":12.5540758386156,"d":"12.55"},{"v":11.3066772791136,"d":"11.31"},{"v":22.2588043589225,"d":"22.26"}]
["g39330.t1",{"$nulls":6},"ARATHwo_AT1G18260.1","Encodes an Arabidopsis homolog of the yeast Hrd3/mammlian Sel1L protein. Involved in ERAD (Endoplasmic reticulum-associated degradation).","sp|A0A0H2VDN9|ESIB_ECOL6","Secretory immunoglobulin A-binding protein EsiB","gi|779917309|ref|WP_045382305.1|",{"$nulls":4},{"v":20.3911782611171,"d":"20.39"},{"v":29.1310125296844,"d":"29.13"},{"v":15.0869096244992,"d":"15.09"},{"v":43.3183397473024,"d":"43.32"}]
["g39051.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|861612721|gb|KMQ85528.1|",{"$nulls":4},{"v":0.274545459858858,"d":"0.27"},{"v":2.59962095536716,"d":"2.60"},{"v":2.7831906261876,"d":"2.78"},{"v":4.24335121673016,"d":"4.24"},null,"X"]
["g39071.t1","0055114:0006222",4152,5737,"oxidation-reduction process:UMP biosynthetic process","dihydroorotate dehydrogenase activity","cytoplasm","ARATHwo_AT3G17810.1","Encodes a protein predicted to have dihydropyrimidine dehydrogenase activity. Its activity has not been demonstrated in vivo, but, it is required for efficient uracil catabolism in Arabidopsis. It localizes to the plastid.","sp|Q9LVI9|DPYD_ARATH","Dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic","gi|168015012|ref|XP_001760045.1|",null,null,"x","x",{"v":31.0564208411373,"d":"31.06"},{"v":39.0752585448147,"d":"39.08"},{"v":54.5426567701277,"d":"54.54"},{"v":20.4589341190028,"d":"20.46"}]
["g39086.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.132738073524557,"d":"0.13"},{"v":0,"d":"0.00"},null,"X","X"]
["g39103.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|731351600|ref|XP_010687122.1|",{"$nulls":9},"X"]
["g39120.t1","0009987:0016043",null,null,"cellular process:cellular component organization",{"$nulls":6},"gi|168024227|ref|XP_001764638.1|",{"$nulls":4},{"v":0.0680078866324203,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g39137.t1",{"$nulls":8},"sp|Q62009|POSTN_MOUSE","Periostin",{"$nulls":3},"x","x",{"v":29.1137955075535,"d":"29.11"},{"v":0.449826297120727,"d":"0.45"},{"v":0.0432704989518803,"d":"0.04"},{"v":0.346243225699118,"d":"0.35"}]
["g39160.t1"]
["g39171.t1"]
["g39188.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|340382901|ref|XP_003389956.1|",{"$nulls":9},"X"]
["g39205.t2","0044260:0022402:0044238:0000280",null,"0044430:0015630:0005737","cellular macromolecule metabolic process:cell cycle process:primary metabolic process:nuclear division",null,"cytoskeletal part:microtubule cytoskeleton:cytoplasm","ARATHwo_AT2G35630.1","Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.","sp|Q94FN2|MOR1_ARATH","Protein MOR1","gi|224061471|ref|XP_002300496.1|",null,null,"x","x",{"v":1.95277315483754,"d":"1.95"},{"v":9.09436275751812,"d":"9.09"},{"v":6.55596689346491,"d":"6.56"},{"v":8.87904047616488,"d":"8.88"}]
["g39221.t1",{"$nulls":15},{"v":0.262666115079927,"d":"0.26"},{"v":0.405355064528791,"d":"0.41"},{"v":0.940457971742181,"d":"0.94"},{"v":8.84192706512628,"d":"8.84"}]
["g39243.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT1G54570.1","Esterase/lipase/thioesterase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130); BEST Arabidopsis thaliana protein match is: Esterase/lipase/thioesterase family protein (TAIR:AT5G41130.1); Has 651 Blast hits to 637 proteins in 188 species: Archae - 0; Bacteria - 283; Metazoa - 139; Fungi - 19; Plants - 149; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).","sp|Q9ZVN2|Y1457_ARATH","Acyltransferase-like protein At1g54570, chloroplastic","gi|168024783|ref|XP_001764915.1|",{"$nulls":4},{"v":9.92414378574344,"d":"9.92"},{"v":2.27831826617372,"d":"2.28"},{"v":1.92785696644418,"d":"1.93"},{"v":2.20105716607647,"d":"2.20"}]
["g39343.t1",{"$nulls":6},"ARATHwo_AT1G27330.1","Ribosome associated membrane protein RAMP4; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: Ribosome associated membrane protein RAMP4 (TAIR:AT1G27350.1); Has 348 Blast hits to 348 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 210; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).","sp|Q6TAW2|SERP2_MOUSE","Stress-associated endoplasmic reticulum protein 2",null,null,"x","x","x",{"v":157.952428804315,"d":"157.95"},{"v":587.810067464597,"d":"587.81"},{"v":550.484943337021,"d":"550.48"},{"v":825.515490417099,"d":"825.52"}]
["g39577.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q17QR8|HARB1_BOVIN","Putative nuclease HARBI1","gi|586720326|ref|XP_006848698.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.297993046727672,"d":"0.30"},{"v":0,"d":"0.00"},"X"]
["g39595.t1",null,null,"0009536:0016020",null,null,"plastid:membrane","ARATHwo_AT2G02590.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).",null,null,"gi|674240684|gb|KFK33449.1|",null,null,"x","x",{"v":21.5775720992077,"d":"21.58"},{"v":5.62638016585358,"d":"5.63"},{"v":2.48306978961942,"d":"2.48"},{"v":0.603819139794779,"d":"0.60"}]
["g39612.t1",{"$nulls":15},{"v":1.07647987683623,"d":"1.08"},{"v":0.109897109683874,"d":"0.11"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g39638.t1","0007369:0006357:0006397:0035721:0035735:0061512:0021591:0008589:0021798",null,"0097014:0030991:0031514:0000790","gastrulation:regulation of transcription from RNA polymerase II promoter:mRNA processing:intraflagellar retrograde transport:intraflagellar transport involved in cilium morphogenesis:protein localization to cilium:ventricular system development:regulation of smoothened signaling pathway:forebrain dorsal/ventral pattern formation",null,"cilium cytoplasm:intraflagellar transport particle A:motile cilium:nuclear chromatin",null,null,"sp|Q0HA38|TT21B_MOUSE","Tetratricopeptide repeat protein 21B","gi|302828766|ref|XP_002945950.1|",{"$nulls":4},{"v":0.105821374018298,"d":"0.11"},{"v":0.333348340937487,"d":"0.33"},{"v":10.0808325673023,"d":"10.08"},{"v":0.0900575744935055,"d":"0.09"}]
["g39645.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.499365383700884,"d":"0.50"},{"v":1.06942491396961,"d":"1.07"},{"v":1.04059885452334,"d":"1.04"},"X",null,"X"]
["g39662.t1",{"$nulls":13},"x","x",{"v":0.280846106560313,"d":"0.28"},{"v":0.653102741619461,"d":"0.65"},{"v":3.13171852667195,"d":"3.13"},{"v":0.635071102570571,"d":"0.64"}]
["g39354.t2",{"$nulls":15},{"v":1.85930201997375,"d":"1.86"},{"v":4.22660398735095,"d":"4.23"},{"v":2.10771131902568,"d":"2.11"},{"v":4.42771611596218,"d":"4.43"}]
["g39371.t1",{"$nulls":13},"x","x",{"v":0.887593032558094,"d":"0.89"},{"v":13.6749237071512,"d":"13.67"},{"v":3.13404942864705,"d":"3.13"},{"v":185.893947957489,"d":"185.89"}]
["g39388.t1",{"$nulls":8},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|723678364|ref|XP_010317362.1|",{"$nulls":9},"X"]
["g39405.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0588803251065503,"d":"0.06"},{"v":0.406200275111768,"d":"0.41"},{"v":0,"d":"0.00"}]
["g39423.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":1.22060513228472,"d":"1.22"},{"v":4.26230109447164,"d":"4.26"},{"v":0.787699366483671,"d":"0.79"},"X",null,"X"]
["g39440.t1",{"$nulls":15},{"v":0.290072741093424,"d":"0.29"},{"v":5.12270923097593,"d":"5.12"},{"v":2.86169571524628,"d":"2.86"},{"v":0.135960160411887,"d":"0.14"}]
["g39458.t1",{"$nulls":15},{"v":2.39317365050223,"d":"2.39"},{"v":2.38035799275243,"d":"2.38"},{"v":0.361541851794196,"d":"0.36"},{"v":0,"d":"0.00"}]
["g73965.t2",{"$nulls":13},"x","x",{"v":0,"d":"0.00"},{"v":0.460371157977255,"d":"0.46"},{"v":1.06201139295159,"d":"1.06"},{"v":1.26677558528859,"d":"1.27"}]
["g39490.t1"]
["g39503.t1",10264,null,"0009507:0016020","myo-inositol hexakisphosphate biosynthetic process",null,"chloroplast:membrane","ARATHwo_AT1G22850.1","SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G03260.1); Has 4604 Blast hits to 4604 proteins in 1169 species: Archae - 23; Bacteria - 2889; Metazoa - 197; Fungi - 87; Plants - 283; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).","sp|Q55909|Y305_SYNY3","TVP38/TMEM64 family membrane protein slr0305","gi|449447579|ref|XP_004141545.1|",{"$nulls":4},{"v":6.33881036610953,"d":"6.34"},{"v":2.74358295594093,"d":"2.74"},{"v":4.35787225456246,"d":"4.36"},{"v":1.5459973259542,"d":"1.55"}]
["g39519.t1",{"$nulls":10},"gi|294461638|gb|ADE76379.1|",{"$nulls":8},"X"]
["g39535.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q8BR93|HARB1_MOUSE","Putative nuclease HARBI1","gi|390339193|ref|XP_795639.3|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0381910302427277,"d":"0.04"},{"v":0.042204795716161,"d":"0.04"},{"v":0,"d":"0.00"},null,"X"]
["g73994.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|56407688|gb|AAV88076.1|",{"$nulls":4},{"v":0.023447847589217,"d":"0.02"},{"v":0.685058495403642,"d":"0.69"},{"v":3.36318896627957,"d":"3.36"},{"v":1.06692218346526,"d":"1.07"},"X"]
["g39554.t2",46686,null,null,"response to cadmium ion",null,null,"ARATHwo_AT2G30710.1","Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT1G04830.2); Has 4509 Blast hits to 4436 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 2389; Fungi - 783; Plants - 598; Viruses - 0; Other Eukaryotes - 739 (source: NCBI BLink).","sp|Q08484|GYP1_YEAST","GTPase-activating protein GYP1","gi|743762626|ref|XP_010909071.1|"]
["g39686.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.243232985164298,"d":"0.24"},{"v":0.22640405282616,"d":"0.23"},{"v":0.512278254926231,"d":"0.51"}]
["g39908.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0856329623137217,"d":"0.09"},{"v":0.0825570444938133,"d":"0.08"},{"v":0,"d":"0.00"},"X",null,"X"]
["g39924.t1","0006468:0015996:0000023:0019252:0043085","0004672:0005524",10287,"protein phosphorylation:chlorophyll catabolic process:maltose metabolic process:starch biosynthetic process:positive regulation of catalytic activity","protein kinase activity:ATP binding","plastoglobule","ARATHwo_AT5G05200.1","Protein kinase superfamily protein; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G31390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9ASX5|Y5520_ARATH","Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic","gi|168009714|ref|XP_001757550.1|",null,null,"x","x",{"v":38.7063171544556,"d":"38.71"},{"v":17.5657085422867,"d":"17.57"},{"v":11.4429901485307,"d":"11.44"},{"v":1.76034528554741,"d":"1.76"}]
["g39940.t1",{"$nulls":10},"gi|672148181|ref|XP_008797168.1|"]
["g39945.t1",{"$nulls":13},"x","x"]
["g39959.t1",{"$nulls":10},"gi|921132266|ref|XP_013440668.1|",{"$nulls":4},{"v":0.683224612502677,"d":"0.68"},{"v":4.16603869117309,"d":"4.17"},{"v":11.9150051358939,"d":"11.92"},{"v":4.01155010964687,"d":"4.01"},"X"]
["g39975.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0310446261872901,"d":"0.03"},{"v":0.190315679926162,"d":"0.19"},{"v":0,"d":"0.00"},null,"X"]
["g39708.t1",{"$nulls":10},"gi|516215077|ref|WP_017619040.1|",{"$nulls":4},{"v":1.76575430965137,"d":"1.77"},{"v":2.5491037451777,"d":"2.55"},{"v":7.43961935118219,"d":"7.44"},{"v":0.383768682942046,"d":"0.38"}]
["g39724.t1",{"$nulls":6},"ARATHwo_AT3G18510.1","unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|922415398|ref|XP_013595106.1|",null,null,"x","x",{"v":3.39987142461278,"d":"3.40"},{"v":2.78297724431519,"d":"2.78"},{"v":1.70479942616398,"d":"1.70"},{"v":8.49196004885232,"d":"8.49"}]
["g39749.t1",{"$nulls":6},"ARATHwo_AT2G25970.1","KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT1G33680.1); Has 68611 Blast hits to 35814 proteins in 1587 species: Archae - 63; Bacteria - 12513; Metazoa - 31065; Fungi - 9811; Plants - 6751; Viruses - 351; Other Eukaryotes - 8057 (source: NCBI BLink).","sp|P10401|POLY_DROME","Retrovirus-related Pol polyprotein from transposon gypsy","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.160864213742763,"d":"0.16"},{"v":0,"d":"0.00"},"X"]
["g39759.t1",{"$nulls":13},"x","x",{"v":3.64217465872768,"d":"3.64"},{"v":2.09582924148068,"d":"2.10"},{"v":29.9186179420271,"d":"29.92"},{"v":1.70293718100266,"d":"1.70"}]
["g39776.t1",{"$nulls":13},"x","x",{"v":5.96952173878474,"d":"5.97"},{"v":4.25420771364663,"d":"4.25"},{"v":3.62059923338873,"d":"3.62"},{"v":1.17168115499867,"d":"1.17"}]
["g39792.t1",{"$nulls":15},{"v":55.8821942547316,"d":"55.88"},{"v":56.6904653685591,"d":"56.69"},{"v":35.2476012921119,"d":"35.25"},{"v":15.923722210972,"d":"15.92"}]
["g39810.t1","0008272:0055085",15116,16020,"sulfate transport:transmembrane transport","sulfate transmembrane transporter activity","membrane",{"$nulls":4},"gi|168016571|ref|XP_001760822.1|",null,null,"x","x",{"v":46.293365624111,"d":"46.29"},{"v":5.29071263308909,"d":"5.29"},{"v":7.18821065072111,"d":"7.19"},{"v":1.16976642098604,"d":"1.17"}]
["g39827.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT5G13530.1","Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling. KEG is essential for Arabidopsis growth and development. ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway.","sp|Q9FY48|KEG_ARATH","E3 ubiquitin-protein ligase KEG","gi|647306965|ref|WP_025747059.1|",null,null,"x","x",{"v":1.64282383141689,"d":"1.64"},{"v":2.99793638801337,"d":"3.00"},{"v":1.5056972489978,"d":"1.51"},{"v":0.725336710267748,"d":"0.73"}]
["g39844.t1",{"$nulls":15},{"v":0.0939381941569444,"d":"0.09"},{"v":0.138235657544753,"d":"0.14"},{"v":1.11578092829964,"d":"1.12"},{"v":0.416979318029677,"d":"0.42"},"X",null,"X"]
["g39863.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|78708471|gb|ABB47446.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0838715740175723,"d":"0.08"},{"v":0.459277364134226,"d":"0.46"},{"v":0.048646773305168,"d":"0.05"},"X"]
["g39880.t1",9987,null,null,"cellular process",null,null,"ARATHwo_AT5G65440.3","unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1).",null,null,"gi|168004634|ref|XP_001755016.1|",null,null,"x","x",{"v":0.290041518718382,"d":"0.29"},{"v":0.633941775757891,"d":"0.63"},{"v":9.03365385848541,"d":"9.03"},{"v":2.65588099770934,"d":"2.66"}]
["g39895.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.269205163610653,"d":"0.27"},{"v":0,"d":"0.00"}]
["g39988.t1","0009987:0050896",null,null,"cellular process:response to stimulus",null,null,"ARATHwo_AT5G28540.1","Encodes the luminal binding protein BiP, an ER-localized member of the HSP70 family. BiP is composed of an N-terminal ATP binding domain and a C-terminal domain that binds to hydrophobic patches on improperly/incompletely folded proteins in an ATP-dependent manner. Involved in polar nuclei fusion during proliferation of endosperm nuclei.","sp|Q42434|BIP_SPIOL","Luminal-binding protein","gi|460378451|ref|XP_004234985.1|",{"$nulls":4},{"v":0.0541995164855439,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.061533378402396,"d":"0.06"}]
["g40008.t1"]
["g40226.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0860586751424269,"d":"0.09"},{"v":0.434730939848773,"d":"0.43"},{"v":1.40707897030002,"d":"1.41"},{"v":0.0368123492374523,"d":"0.04"},"X"]
["g40243.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.076672733260874,"d":"0.08"},{"v":0.215701885866296,"d":"0.22"},{"v":0.859950759743155,"d":"0.86"},{"v":0.0972935466103363,"d":"0.10"},"X"]
["g40260.t1",{"$nulls":13},"x","x"]
["g40277.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.337393998356606,"d":"0.34"},{"v":0.189239587026482,"d":"0.19"},{"v":0,"d":"0.00"},"X"]
["g40296.t1",null,3723,null,null,"RNA binding",null,"ARATHwo_AT5G57870.1","Encodes a putative eukaryotic translation initiation factor.","sp|Q6K641|IF4G2_ORYSJ","Eukaryotic translation initiation factor isoform 4G-2","gi|168022895|ref|XP_001763974.1|",null,null,"x","x",{"v":5.5439708514175,"d":"5.54"},{"v":20.5629195268573,"d":"20.56"},{"v":12.5991138673392,"d":"12.60"},{"v":20.0311337816899,"d":"20.03"}]
["g40022.t1",{"$nulls":6},"ARATHwo_AT2G26900.1","Sodium Bile acid symporter family; FUNCTIONS IN: transporter activity, bile acid:sodium symporter activity; INVOLVED IN: sodium ion transport, organic anion transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bile acid:sodium symporter (InterPro:IPR002657), Bile acid transporter (InterPro:IPR004710); BEST Arabidopsis thaliana protein match is: Sodium Bile acid symporter family (TAIR:AT1G78560.1); Has 5023 Blast hits to 5015 proteins in 1109 species: Archae - 92; Bacteria - 2706; Metazoa - 448; Fungi - 4; Plants - 268; Viruses - 0; Other Eukaryotes - 1505 (source: NCBI BLink).","sp|Q1EBV7|BASS2_ARATH","Sodium/pyruvate cotransporter BASS2, chloroplastic","gi|168050070|ref|XP_001777483.1|",null,null,"x","x",{"v":74.2615919617396,"d":"74.26"},{"v":9.80591615042901,"d":"9.81"},{"v":10.9686584742454,"d":"10.97"},{"v":0.29115607202793,"d":"0.29"}]
["g40038.t1","0006278:0006508:0006310","0046872:0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","metal ion binding:RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q5DTZ0|NYNRI_MOUSE","Protein NYNRIN","gi|77555663|gb|ABA98459.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.241096774245062,"d":"0.24"},{"v":0.960071767601256,"d":"0.96"},{"v":0.145152539655674,"d":"0.15"},"X"]
["g40056.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|727496944|ref|XP_010424558.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.451671092507947,"d":"0.45"},{"v":1.42900319455748,"d":"1.43"},{"v":0.37984606226439,"d":"0.38"},"X"]
["g40071.t1",{"$nulls":10},"gi|682355441|gb|KFY45433.1|"]
["g40093.t1",{"$nulls":15},{"v":2.84360364335221,"d":"2.84"},{"v":27.3459072256329,"d":"27.35"},{"v":0.318876798105685,"d":"0.32"},{"v":0,"d":"0.00"}]
["g40107.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0476692435137602,"d":"0.05"},{"v":0.283398910104532,"d":"0.28"},{"v":2.74908293986405,"d":"2.75"},{"v":0.601191007299218,"d":"0.60"},"X"]
["g40121.t2","0006464:0032259:0044767",8168,5737,"cellular protein modification process:methylation:single-organism developmental process","methyltransferase activity","cytoplasm","ARATHwo_AT3G48330.1","Encodes protein-L-isoaspartate methyltransferase. Important for maintaining viability as the seed ages. Involved in germination.","sp|Q42539|PIMT1_ARATH","Protein-L-isoaspartate O-methyltransferase 1","gi|702256307|ref|XP_010026945.1|",null,null,"x","x",{"v":27.1968516821341,"d":"27.20"},{"v":10.7066912134635,"d":"10.71"},{"v":14.8838873897418,"d":"14.88"},{"v":32.5768034000918,"d":"32.58"}]
["g40136.t1",{"$nulls":10},"gi|764632350|ref|XP_011469748.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.073120452875566,"d":"0.07"},{"v":0.123313243335474,"d":"0.12"},{"v":0.0518199494349847,"d":"0.05"}]
["g40154.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923912317|ref|XP_013725862.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0471386052794553,"d":"0.05"},{"v":0.211091983029716,"d":"0.21"},{"v":0,"d":"0.00"},"X"]
["g40168.t1",{"$nulls":6},"ARATHwo_AT2G45460.3","SMAD/FHA domain-containing protein ; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253).",null,null,"gi|586777499|ref|XP_006858033.1|",{"$nulls":4},{"v":0.0582139790237474,"d":"0.06"},{"v":0.431919275790778,"d":"0.43"},{"v":0.577080118215787,"d":"0.58"},{"v":0.85526957616081,"d":"0.86"}]
["g40181.t1",{"$nulls":6},"ARATHwo_AT2G25320.1","TRAF-like family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G25330.1); Has 73652 Blast hits to 40883 proteins in 2342 species: Archae - 900; Bacteria - 9328; Metazoa - 35691; Fungi - 5783; Plants - 4303; Viruses - 204; Other Eukaryotes - 17443 (source: NCBI BLink).",null,null,"gi|326490461|dbj|BAJ84894.1|",{"$nulls":4},{"v":0.369133456404987,"d":"0.37"},{"v":0.321018762728706,"d":"0.32"},{"v":0.375870726753641,"d":"0.38"},{"v":0.34360679446443,"d":"0.34"},null,"X"]
["g40202.t1"]
["g40307.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0312634784235953,"d":"0.03"},{"v":0.211000348734361,"d":"0.21"},{"v":0,"d":"0.00"}]
["g74314.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0625872306748867,"d":"0.06"},{"v":0.199377763833706,"d":"0.20"},{"v":0,"d":"0.00"}]
["g40519.t1",{"$nulls":15},{"v":0.682685626656328,"d":"0.68"},{"v":2.65063391524987,"d":"2.65"},{"v":0.907032729143819,"d":"0.91"},{"v":0.687120699168576,"d":"0.69"},"X",null,"X"]
["g40536.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|923751384|ref|XP_013674553.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.094025256066339,"d":"0.09"},{"v":0.0801227234444295,"d":"0.08"},{"v":0,"d":"0.00"},"X"]
["g40554.t1",{"$nulls":10},"gi|302796753|ref|XP_002980138.1|"]
["g40570.t1",{"$nulls":19},"X",null,"X"]
["g40327.t1",44458,5515,"0005858:0036064:0031514","motile cilium assembly","protein binding","axonemal dynein complex:cilium basal body:motile cilium",null,null,"sp|Q7XA07|DC2L1_CHLRE","Cytoplasmic dynein 2 light intermediate chain 1","gi|303288077|ref|XP_003063327.1|",null,null,"x","x",{"v":0.0358180146895955,"d":"0.04"},{"v":0.198603956461601,"d":"0.20"},{"v":13.2640132401756,"d":"13.26"},{"v":0,"d":"0.00"}]
["g40344.t1",{"$nulls":6},"ARATHwo_AT3G14360.1","alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G42930.1); Has 1400 Blast hits to 1392 proteins in 294 species: Archae - 0; Bacteria - 352; Metazoa - 56; Fungi - 304; Plants - 428; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).","sp|Q6F358|PLA6_ORYSJ","Phospholipase A1-II 6","gi|545372285|ref|XP_005650626.1|",{"$nulls":4},{"v":0.961608746451518,"d":"0.96"},{"v":66.3548863542414,"d":"66.35"},{"v":1.04522327425592,"d":"1.05"},{"v":0.17451938394661,"d":"0.17"}]
["g40360.t1",{"$nulls":15},{"v":35.4629156439822,"d":"35.46"},{"v":51.8016377126698,"d":"51.80"},{"v":168.969806909757,"d":"168.97"},{"v":70.2560753135989,"d":"70.26"},null,"X","X"]
["g40378.t1",null,null,16020,null,null,"membrane","ARATHwo_AT5G11100.1","SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|A0JJX5|SYT4_ARATH","Synaptotagmin-4","gi|302807913|ref|XP_002985650.1|",null,null,"x","x",{"v":5.77535132443373,"d":"5.78"},{"v":3.5481968870461,"d":"3.55"},{"v":2.67662692770834,"d":"2.68"},{"v":10.888631473667,"d":"10.89"}]
["g40395.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0.0544850804983322,"d":"0.05"},{"v":0.28962164847744,"d":"0.29"},{"v":1.63465169145658,"d":"1.63"},{"v":0.151181815304811,"d":"0.15"},"X"]
["g40396.t1",6413,3743,null,"translational initiation","translation initiation factor activity",null,"ARATHwo_AT2G04520.1","Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G35680.2); Has 921 Blast hits to 921 proteins in 273 species: Archae - 305; Bacteria - 0; Metazoa - 209; Fungi - 83; Plants - 55; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).","sp|P47815|IF1A_WHEAT","Eukaryotic translation initiation factor 1A","gi|760450367|ref|XP_011402252.1|",null,"x","x","x",{"v":325.551515408854,"d":"325.55"},{"v":263.270145588023,"d":"263.27"},{"v":301.265595153477,"d":"301.27"},{"v":409.871220231949,"d":"409.87"}]
["g40411.t1",{"$nulls":6},"ARATHwo_AT1G18260.1","Encodes an Arabidopsis homolog of the yeast Hrd3/mammlian Sel1L protein. Involved in ERAD (Endoplasmic reticulum-associated degradation).","sp|A0A0H2VDN9|ESIB_ECOL6","Secretory immunoglobulin A-binding protein EsiB","gi|490870890|ref|WP_004732904.1|",null,null,"x","x",{"v":17.4412839720743,"d":"17.44"},{"v":35.9188474685304,"d":"35.92"},{"v":40.2797907964048,"d":"40.28"},{"v":1.50351473223385,"d":"1.50"}]
["g40427.t1",{"$nulls":6},"ARATHwo_AT3G52950.1","CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (TAIR:AT2G36500.1); Has 6963 Blast hits to 5172 proteins in 1360 species: Archae - 807; Bacteria - 5016; Metazoa - 6; Fungi - 130; Plants - 259; Viruses - 0; Other Eukaryotes - 745 (source: NCBI BLink).","sp|Q9LF97|Y3295_ARATH","CBS domain-containing protein CBSCBSPB3","gi|302783404|ref|XP_002973475.1|",null,null,"x","x",{"v":14.5708791049375,"d":"14.57"},{"v":9.73438499416192,"d":"9.73"},{"v":12.0284551775308,"d":"12.03"},{"v":23.7316649957957,"d":"23.73"}]
["g40442.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0127793805218348,"d":"0.01"},{"v":0.0540702939535913,"d":"0.05"},"X"]
["g40457.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.422349649334886,"d":"0.42"}]
["g40474.t1",{"$nulls":15},{"v":45.0336646602297,"d":"45.03"},{"v":34.7020999227138,"d":"34.70"},{"v":24.337286448167,"d":"24.34"},{"v":1.20305225125846,"d":"1.20"}]
["g40491.t1",null,"0003682:0003677",null,null,"chromatin binding:DNA binding",null,"ARATHwo_AT3G46640.3","Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter.","sp|Q9SNB4|PCL1_ARATH","Transcription factor LUX","gi|703137723|ref|XP_010106529.1|",null,null,"x","x",{"v":12.4704358635173,"d":"12.47"},{"v":6.95912179375813,"d":"6.96"},{"v":6.30265657039328,"d":"6.30"},{"v":8.83367172054251,"d":"8.83"}]
["g40590.t1",null,46872,null,null,"metal ion binding",{"$nulls":3},"sp|Q09575|YRD6_CAEEL","Uncharacterized protein K02A2.6","gi|731378869|ref|XP_010668297.1|",{"$nulls":4},{"v":0.325102989490406,"d":"0.33"},{"v":0.308085109819928,"d":"0.31"},{"v":1.21205245963436,"d":"1.21"},{"v":0.831210720401527,"d":"0.83"},"X"]
["g40605.t1",{"$nulls":6},"ARATHwo_AT4G20520.1","RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|34392578|dbj|BAC82621.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0280187548985058,"d":"0.03"},{"v":0.153586013321752,"d":"0.15"},{"v":0,"d":"0.00"}]
["g40622.t1",{"$nulls":6},"ARATHwo_ATMG00850.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|702252073|ref|XP_010064348.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.609867454815518,"d":"0.61"},{"v":1.58707841400069,"d":"1.59"},{"v":0.388129633549728,"d":"0.39"},"X"]
["g40852.t1",{"$nulls":8},"sp|P19560|POL_BIV29","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g40870.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0261302774450033,"d":"0.03"},{"v":0.0759372978951693,"d":"0.08"},{"v":0.45535095226726,"d":"0.46"},{"v":0.099463323267009,"d":"0.10"},"X"]
["g40887.t1",{"$nulls":13},"x","x",{"v":8.44616206514831,"d":"8.45"},{"v":12.4484013589337,"d":"12.45"},{"v":8.20887627711651,"d":"8.21"},{"v":8.96123639845455,"d":"8.96"}]
["g40900.t1",{"$nulls":8},"sp|P18096|POL_HV2BE","Gag-Pol polyprotein","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":0.0363042666074753,"d":"0.04"},{"v":0.205694930027511,"d":"0.21"},{"v":0.701948781094763,"d":"0.70"},{"v":0.069195761435572,"d":"0.07"},null,"X"]
["g40923.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|472580248|gb|EMS18080.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0373418077070777,"d":"0.04"},{"v":0.935493227603221,"d":"0.94"},{"v":0.329771693575059,"d":"0.33"},null,"X"]
["g40640.t1","0016036:0042550:0019375:0016117:0006655:0006636:0015995:0019288:0001666",46481,"0009707:0005739","cellular response to phosphate starvation:photosystem I stabilization:galactolipid biosynthetic process:carotenoid biosynthetic process:phosphatidylglycerol biosynthetic process:unsaturated fatty acid biosynthetic process:chlorophyll biosynthetic process:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:response to hypoxia","digalactosyldiacylglycerol synthase activity","chloroplast outer membrane:mitochondrion","ARATHwo_AT3G11670.1","Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).","sp|Q6DW76|DGDG1_SOYBN","Digalactosyldiacylglycerol synthase 1, chloroplastic","gi|302816216|ref|XP_002989787.1|",null,null,"x","x",{"v":4.46347012609712,"d":"4.46"},{"v":17.5894245454535,"d":"17.59"},{"v":23.9079798194588,"d":"23.91"},{"v":17.7725582614575,"d":"17.77"}]
["g40656.t1",{"$nulls":6},"ARATHwo_AT3G24255.1","RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1); Has 2050 Blast hits to 1978 proteins in 93 species: Archae - 11; Bacteria - 19; Metazoa - 133; Fungi - 20; Plants - 1757; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein",{"$nulls":5},{"v":0.0199142070580216,"d":"0.02"},{"v":0.0457994946842897,"d":"0.05"},{"v":6.03002708869351,"d":"6.03"},{"v":1.96293223192363,"d":"1.96"},null,"X"]
["g40671.t1",{"$nulls":6},"ARATHwo_AT5G56720.1","predicted to encode a cytosolic malate dehydrogenase.","sp|Q08062|MDHC_MAIZE","Malate dehydrogenase, cytoplasmic","gi|595814637|ref|XP_007203774.1|",{"$nulls":4},{"v":0.0390779691808642,"d":"0.04"},{"v":0.0150311996752007,"d":"0.02"},{"v":0.367520468707544,"d":"0.37"},{"v":0.967263152325751,"d":"0.97"}]
["g40683.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.100628030365491,"d":"0.10"},{"v":0.227104344253315,"d":"0.23"},{"v":0,"d":"0.00"},"X",null,"X"]
["g40704.t1",{"$nulls":10},"gi|914626327|ref|WP_050618063.1|"]
["g40720.t1","0006278:0006310","0003964:0003677:0003723",null,"RNA-dependent DNA replication:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding",{"$nulls":3},"sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|595459452|gb|EXX62860.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.194515812842741,"d":"0.19"},{"v":0,"d":"0.00"},"X"]
["g40735.t1",{"$nulls":10},"gi|743893201|ref|XP_010911737.1|"]
["g40751.t1","0005975:0016310","0016301:0016773",null,"carbohydrate metabolic process:phosphorylation","kinase activity:phosphotransferase activity, alcohol group as acceptor",null,"ARATHwo_AT5G49650.1","Encodes a cytosolic protein capable of phosphorylating xylulose and deoxy-xylulose. It most likely plays a role in producing precursors for isoprenoid biosynthesis.","sp|O75191|XYLB_HUMAN","Xylulose kinase","gi|802570322|ref|XP_012068116.1|",null,"x","x","x",{"v":1.7306488964986,"d":"1.73"},{"v":2.78214006024784,"d":"2.78"},{"v":2.35105824627112,"d":"2.35"},{"v":0.356431584981517,"d":"0.36"}]
["g40764.t1",{"$nulls":15},{"v":4.23823577639047,"d":"4.24"},{"v":1.18729592685266,"d":"1.19"},{"v":2.20990783950292,"d":"2.21"},{"v":0.392982019116163,"d":"0.39"}]
["g40783.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q9L7Q2|ZMPB_STRPN","Zinc metalloprotease ZmpB","gi|727131652|emb|CEG84463.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.047759060113825,"d":"0.05"},{"v":0.387332775217461,"d":"0.39"},{"v":0,"d":"0.00"},"X"]
["g40797.t1","0006354:0006412",3735,"0005840:0005739","DNA-dependent transcription, elongation:translation","structural constituent of ribosome","ribosome:mitochondrion","ARATHwo_AT2G20060.1","Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 (TAIR:AT1G07320.4); Has 8236 Blast hits to 8236 proteins in 2694 species: Archae - 70; Bacteria - 5573; Metazoa - 121; Fungi - 129; Plants - 100; Viruses - 0; Other Eukaryotes - 2243 (source: NCBI BLink).","sp|Q2RQW1|RL4_RHORT","50S ribosomal protein L4","gi|168041144|ref|XP_001773052.1|",null,"x","x","x",{"v":24.5177719385486,"d":"24.52"},{"v":10.8409573502572,"d":"10.84"},{"v":7.90004267253914,"d":"7.90"},{"v":14.2181537200219,"d":"14.22"}]
["g40815.t1",{"$nulls":6},"ARATHwo_AT5G06590.1","unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",{"$nulls":4},"x","x","x",{"v":0.607127162055973,"d":"0.61"},{"v":2.37011112744721,"d":"2.37"},{"v":3.00391077038226,"d":"3.00"},{"v":15.0098267464034,"d":"15.01"}]
["g40830.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.96021703745775,"d":"1.96"},{"v":0,"d":"0.00"}]
["g40933.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|729338445|ref|XP_010539211.1|",{"$nulls":4},{"v":0.16736544621226,"d":"0.17"},{"v":0.801581081897412,"d":"0.80"},{"v":3.43919149652536,"d":"3.44"},{"v":0.606178843813638,"d":"0.61"},null,"X"]
["g41149.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.1624764229245,"d":"1.16"},{"v":0.197863371570866,"d":"0.20"},"X",null,"X"]
["g41166.t1",{"$nulls":6},"ARATHwo_AT1G17200.1","Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G14380.1); Has 681 Blast hits to 681 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|P0DI65|CSPLL_MAIZE","CASP-like protein 16",{"$nulls":3},"x","x",{"v":0.85099011656515,"d":"0.85"},{"v":28.9852932873669,"d":"28.99"},{"v":0.244094783064548,"d":"0.24"},{"v":289.967409516591,"d":"289.97"}]
["g41182.t1",5975,16787,"0043231:0044444","carbohydrate metabolic process","hydrolase activity","intracellular membrane-bounded organelle:cytoplasmic part","ARATHwo_AT3G23920.1","Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3.","sp|Q9LIR6|BAM1_ARATH","Beta-amylase 1, chloroplastic","gi|672142032|ref|XP_008794866.1|",null,null,"x","x",{"v":5.92724845367817,"d":"5.93"},{"v":0.351205004626524,"d":"0.35"},{"v":0.925819313979556,"d":"0.93"},{"v":0.176263013754312,"d":"0.18"}]
["g41199.t1",{"$nulls":8},"sp|P38507|SPA_STAAU","Immunoglobulin G-binding protein A","gi|168060649|ref|XP_001782307.1|",null,"x","x","x",{"v":13.7439400617401,"d":"13.74"},{"v":14.5947301196811,"d":"14.59"},{"v":7.6140415677258,"d":"7.61"},{"v":0.321579389043722,"d":"0.32"}]
["g41218.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|390339193|ref|XP_795639.3|",{"$nulls":9},"X"]
["g40947.t1",{"$nulls":8},"sp|P13915|CVCA_PEA","Convicilin","gi|565376082|ref|XP_006354542.1|",{"$nulls":4},{"v":1.76223860547863,"d":"1.76"},{"v":72.91957468462,"d":"72.92"},{"v":0.944436958278226,"d":"0.94"},{"v":942.017496194013,"d":"942.02"}]
["g40964.t1"]
["g74614.t1","0044238:0044260:0016310:0007165","0004672:0097159:1901363",347,"primary metabolic process:cellular macromolecule metabolic process:phosphorylation:signal transduction","protein kinase activity:organic cyclic compound binding:heterocyclic compound binding","THO complex","ARATHwo_AT1G24706.2","Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.","sp|F4IAT2|THOC2_ARATH","THO complex subunit 2","gi|567911613|ref|XP_006448120.1|",null,null,"x","x",{"v":3.1343723368875,"d":"3.13"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g40997.t1",{"$nulls":8},"sp|Q8I7P9|POL5_DROME","Retrovirus-related Pol polyprotein from transposon opus","gi|729354218|ref|XP_010544480.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":4.04306241947867,"d":"4.04"},{"v":0.425682551200675,"d":"0.43"},{"v":0,"d":"0.00"},null,"X"]
["g41013.t1"]
["g41022.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|657989954|ref|XP_008387198.1|",{"$nulls":4},{"v":0.0487812354885468,"d":"0.05"},{"v":0.765891157979443,"d":"0.77"},{"v":2.5490861639361,"d":"2.55"},{"v":0.465155733841013,"d":"0.47"},null,"X"]
["g41047.t1",{"$nulls":15},{"v":0.119824499359358,"d":"0.12"},{"v":0,"d":"0.00"},{"v":0.300799062286595,"d":"0.30"},{"v":0.288247520154417,"d":"0.29"}]
["g41063.t1",{"$nulls":13},"x","x",{"v":4.26827831230713,"d":"4.27"},{"v":26.756198561913,"d":"26.76"},{"v":4.55576984862317,"d":"4.56"},{"v":0,"d":"0.00"}]
["g41081.t1",{"$nulls":6},"ARATHwo_AT3G33530.3","Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G26610.1).","sp|Q9BZH6|WDR11_HUMAN","WD repeat-containing protein 11","gi|723712792|ref|XP_010323297.1|",{"$nulls":4},{"v":0.691682763605694,"d":"0.69"},{"v":1.34818733427183,"d":"1.35"},{"v":1.45906711429547,"d":"1.46"},{"v":1.27190127476124,"d":"1.27"}]
["g41098.t1"]
["g41109.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|923912317|ref|XP_013725862.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.104274157135272,"d":"0.10"},{"v":0.114722038800147,"d":"0.11"},"X"]
["g41116.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|828310986|ref|XP_012571185.1|",{"$nulls":4},{"v":0.125852229210382,"d":"0.13"},{"v":0.507661545742344,"d":"0.51"},{"v":0.113385527051494,"d":"0.11"},{"v":0.14373985521777,"d":"0.14"}]
["g41132.t1",{"$nulls":6},"ARATHwo_AT3G49660.1","Encodes a structural core component of a COMPASS-like H3K4 histone methylation complex.","sp|Q8YRI1|YY46_NOSS1","Uncharacterized WD repeat-containing protein alr3466","gi|548834134|gb|ERM96571.1|",{"$nulls":4},{"v":0.874777707767712,"d":"0.87"},{"v":3.47423522612027,"d":"3.47"},{"v":3.18679289860452,"d":"3.19"},{"v":2.14938698969487,"d":"2.15"}]
["g41236.t1",{"$nulls":15},{"v":0.111831898511208,"d":"0.11"},{"v":0,"d":"0.00"},{"v":0.117927445735653,"d":"0.12"},{"v":0.137787345794216,"d":"0.14"}]
["g41253.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|586720326|ref|XP_006848698.1|",{"$nulls":8},"X"]
["g41541.t1",{"$nulls":10},"gi|827752542|gb|KLO07381.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0608596173313703,"d":"0.06"},{"v":0.0705046547550177,"d":"0.07"},{"v":0,"d":"0.00"},"X"]
["g41545.t1",{"$nulls":10},"gi|694386179|ref|XP_009368889.1|",{"$nulls":4},{"v":0.0668885771901554,"d":"0.07"},{"v":0.565760275923505,"d":"0.57"},{"v":2.37275167873384,"d":"2.37"},{"v":0.42853699708186,"d":"0.43"}]
["g41561.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.0605959030479403,"d":"0.06"},{"v":0.136550639270663,"d":"0.14"},{"v":1.0292621212056,"d":"1.03"},{"v":0.076968212158451,"d":"0.08"},"X"]
["g41578.t1","0016192:0006886",8565,"0005794:0030131","vesicle-mediated transport:intracellular protein transport","protein transporter activity","Golgi apparatus:clathrin adaptor complex","ARATHwo_AT1G60070.2","Adaptor protein complex AP-1, gamma subunit; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus part, Golgi apparatus, clathrin adaptor complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: gamma-adaptin 1 (TAIR:AT1G23900.2).","sp|Q9ZUI6|AP1G2_ARATH","AP-1 complex subunit gamma-2","gi|302800832|ref|XP_002982173.1|",null,null,"x","x",{"v":10.7083132583798,"d":"10.71"},{"v":34.107118007346,"d":"34.11"},{"v":67.7715735220906,"d":"67.77"},{"v":32.6755063757013,"d":"32.68"}]
["g41270.t1",6626,null,5623,"protein targeting to mitochondrion",null,"cell","ARATHwo_AT1G14300.2","ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Uncharacterised protein family UPF0507, C-terminal (InterPro:IPR007206).","sp|Q76NW7|HGH1_DICDI","Protein HGH1 homolog","gi|727432935|ref|XP_010495910.1|",null,null,"x","x",{"v":9.97470455971303,"d":"9.97"},{"v":2.740878634346,"d":"2.74"},{"v":4.7141550792884,"d":"4.71"},{"v":2.56863889538282,"d":"2.57"}]
["g41287.t1"]
["g41306.t1",{"$nulls":15},{"v":0.908410531522025,"d":"0.91"},{"v":3.29441869410486,"d":"3.29"},{"v":7.61511953293095,"d":"7.62"},{"v":4.14736472575225,"d":"4.15"}]
["g41322.t1",{"$nulls":20},"X","X"]
["g41335.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.150265705462894,"d":"0.15"},{"v":0,"d":"0.00"},"X"]
["g41353.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.186331620265752,"d":"0.19"},{"v":0.04822229749576,"d":"0.05"},"X"]
["g41372.t1",6904,null,null,"vesicle docking involved in exocytosis",null,null,"ARATHwo_AT2G17980.1","member of SLY1 Gene Family","sp|Q9SL48|SLY1_ARATH","SEC1 family transport protein SLY1","gi|116790604|gb|ABK25676.1|",null,null,"x","x",{"v":9.23061861167347,"d":"9.23"},{"v":10.9269500026919,"d":"10.93"},{"v":3.89014227335602,"d":"3.89"},{"v":10.4607524261789,"d":"10.46"}]
["g41387.t1",{"$nulls":8},"sp|P33332|SEC3_YEAST","Exocyst complex component SEC3"]
["g41404.t1",{"$nulls":6},"ARATHwo_AT1G53645.1","hydroxyproline-rich glycoprotein family protein; Has 15375 Blast hits to 12179 proteins in 920 species: Archae - 8; Bacteria - 1425; Metazoa - 5915; Fungi - 2848; Plants - 1527; Viruses - 230; Other Eukaryotes - 3422 (source: NCBI BLink).",null,null,"gi|168040717|ref|XP_001772840.1|",{"$nulls":4},{"v":6.61474642345974,"d":"6.61"},{"v":6.23025678617836,"d":"6.23"},{"v":4.91676054315986,"d":"4.92"},{"v":2.28465903331034,"d":"2.28"}]
["g41421.t1",{"$nulls":15},{"v":0.232116945887549,"d":"0.23"},{"v":0.788485900087773,"d":"0.79"},{"v":0.238421253082326,"d":"0.24"},{"v":0,"d":"0.00"}]
["g41439.t1",{"$nulls":10},"gi|558137846|ref|XP_006117867.1|",{"$nulls":8},"X"]
["g41455.t1",{"$nulls":6},"ARATHwo_AT4G21520.1","Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G08390.1); Has 9857 Blast hits to 6114 proteins in 421 species: Archae - 34; Bacteria - 3288; Metazoa - 2459; Fungi - 1903; Plants - 847; Viruses - 0; Other Eukaryotes - 1326 (source: NCBI BLink).","sp|Q5XII5|WAP53_RAT","Telomerase Cajal body protein 1","gi|255569287|ref|XP_002525611.1|",{"$nulls":4},{"v":6.61747598284256,"d":"6.62"},{"v":3.69112133119086,"d":"3.69"},{"v":2.6125784573926,"d":"2.61"},{"v":4.25356041151077,"d":"4.25"}]
["g44288.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.253094468181256,"d":"0.25"},{"v":0.456549484609485,"d":"0.46"},{"v":0,"d":"0.00"}]
["g44298.t1"]
["g44315.t1",{"$nulls":12},"x","x","x",{"v":10.5112316462772,"d":"10.51"},{"v":2.36876735795844,"d":"2.37"},{"v":7.86928052610715,"d":"7.87"},{"v":3.04329967382014,"d":"3.04"}]
["g44332.t1","0034660:0023014:0043269:0009639:0006351:0044711:0060255:0065009:0009637:0080090:0031323:0009657:0044723:0009893:0000160:0044262:0006468:0044085","0004674:0009881:0005524:0000155","0044464:0016020","ncRNA metabolic process:signal transduction by phosphorylation:regulation of ion transport:response to red or far red light:transcription, DNA-dependent:single-organism biosynthetic process:regulation of macromolecule metabolic process:regulation of molecular function:response to blue light:regulation of primary metabolic process:regulation of cellular metabolic process:plastid organization:single-organism carbohydrate metabolic process:positive regulation of metabolic process:phosphorelay signal transduction system:cellular carbohydrate metabolic process:protein phosphorylation:cellular component biogenesis","protein serine/threonine kinase activity:photoreceptor activity:ATP binding:phosphorelay sensor kinase activity","cell part:membrane","ARATHwo_AT5G58140.2","Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.","sp|P93025|PHOT2_ARATH","Phototropin-2","gi|635148809|gb|AHZ63849.1|",null,null,"x","x",{"v":5.05763706674565,"d":"5.06"},{"v":8.05858586857107,"d":"8.06"},{"v":2.69788322515748,"d":"2.70"},{"v":0.242926080092217,"d":"0.24"}]
["g44347.t1","0071704:0045333:0044238:0006950","0008137:0051536",5747,"organic substance metabolic process:cellular respiration:primary metabolic process:response to stress","NADH dehydrogenase (ubiquinone) activity:iron-sulfur cluster binding","mitochondrial respiratory chain complex I","ARATHwo_AT5G37510.2","Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.","sp|Q9FGI6|NDUS1_ARATH","NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial","gi|302843509|ref|XP_002953296.1|",{"$nulls":4},{"v":0.118617390831935,"d":"0.12"},{"v":0,"d":"0.00"},{"v":4.99306768257297,"d":"4.99"},{"v":0.653732591951687,"d":"0.65"}]
["g41461.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink)."]
["g41484.t1",8152,null,null,"metabolic process",null,null,"ARATHwo_AT5G48545.1","Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.","sp|P95937|YHIT_SULSO","Uncharacterized HIT-like protein SSO2163","gi|694425151|ref|XP_009340327.1|",null,"x","x","x",{"v":48.1860683527988,"d":"48.19"},{"v":9.94383497099982,"d":"9.94"},{"v":7.51525376946175,"d":"7.52"},{"v":2.32021541876698,"d":"2.32"}]
["g41500.t1",null,16301,null,null,"kinase activity",null,"ARATHwo_AT3G25490.1","Protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall associated kinase 5 (TAIR:AT1G21230.1); Has 117108 Blast hits to 115788 proteins in 4370 species: Archae - 143; Bacteria - 13531; Metazoa - 43249; Fungi - 9742; Plants - 32887; Viruses - 438; Other Eukaryotes - 17118 (source: NCBI BLink).","sp|Q9LSV3|WAKLS_ARATH","Putative wall-associated receptor kinase-like 16","gi|645241457|ref|XP_008227086.1|",null,null,"x","x",{"v":0.551674158699562,"d":"0.55"},{"v":0.288383857149413,"d":"0.29"},{"v":0.784069529322197,"d":"0.78"},{"v":0.186360394878497,"d":"0.19"}]
["g41586.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.157062521999963,"d":"0.16"},{"v":0,"d":"0.00"}]
["g41604.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|661185511|emb|CDH52155.1|",{"$nulls":9},"X"]
["g41617.t1",{"$nulls":13},"x","x",{"v":17.1247120488839,"d":"17.12"},{"v":16.7377310445554,"d":"16.74"},{"v":14.9859299072264,"d":"14.99"},{"v":0.14146970471348,"d":"0.14"}]
["g41638.t1","0001510:0006364:0006399",3824,null,"RNA methylation:rRNA processing:tRNA metabolic process","catalytic activity",null,"ARATHwo_AT2G39670.2","Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6992 Blast hits to 6986 proteins in 2311 species: Archae - 11; Bacteria - 5102; Metazoa - 1; Fungi - 1; Plants - 134; Viruses - 5; Other Eukaryotes - 1738 (source: NCBI BLink).","sp|B7K4N4|RLMN_CYAP8","Probable dual-specificity RNA methyltransferase RlmN","gi|743841752|ref|XP_010937612.1|",{"$nulls":4},{"v":3.63029632515268,"d":"3.63"},{"v":3.04647517996464,"d":"3.05"},{"v":2.09099210964731,"d":"2.09"},{"v":1.15623639902133,"d":"1.16"}]
["g41655.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.219454848594019,"d":"0.22"},{"v":1.80377344471585,"d":"1.80"},{"v":0,"d":"0.00"}]
["g41671.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|565356969|ref|XP_006345328.1|",{"$nulls":4},{"v":0.645134306357382,"d":"0.65"},{"v":12.6206250296332,"d":"12.62"},{"v":0.0269996027353359,"d":"0.03"},{"v":365.336579934471,"d":"365.34"}]
["g41688.t1","0006139:0016043:0009639:0044085",null,9534,"nucleobase-containing compound metabolic process:cellular component organization:response to red or far red light:cellular component biogenesis",null,"chloroplast thylakoid","ARATHwo_AT5G17170.1","enhancer of sos3-1 (ENH1); FUNCTIONS IN: electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT5G51010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|359489916|ref|XP_002275188.2|",{"$nulls":4},{"v":20.890427516845,"d":"20.89"},{"v":33.1340860437941,"d":"33.13"},{"v":22.5687730525235,"d":"22.57"},{"v":6.42280801605974,"d":"6.42"}]
["g75106.t1",{"$nulls":13},"x","x",{"v":11.803462251764,"d":"11.80"},{"v":5.58627312233807,"d":"5.59"},{"v":5.12377437748664,"d":"5.12"},{"v":0.711936126615737,"d":"0.71"},"X",null,"X"]
["g41721.t1",{"$nulls":6},"ARATHwo_AT1G20770.1","unknown protein; Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|Q8VE99|CC115_MOUSE","Coiled-coil domain-containing protein 115",{"$nulls":3},"x","x",{"v":11.7053398160438,"d":"11.71"},{"v":2.24903077272402,"d":"2.25"},{"v":1.35070137360366,"d":"1.35"},{"v":1.51894887262373,"d":"1.52"}]
["g41738.t1",6468,"0005524:0004674",5886,"protein phosphorylation","ATP binding:protein serine/threonine kinase activity","plasma membrane","ARATHwo_AT2G20300.1","Encodes ABNORMAL LEAF SHAPE 2 (ALE2), a receptor-like protein kinase (RLK) with a cluster of basic amino acid residues followed by a cysteine-containing sequence in the putative extracellular domain. Function together with ACR4 (Arabidopsis homolog of the Crinkly4) and ALE1 in positively regulating protoderm-specific gene expression and for the formation of leafy organs. ale2 mutants have various epidermal defects, including disorganization of epidermis-related tissues, defects in the leaf cuticle and the fusion of organs.","sp|Q8RWW0|ALE2_ARATH","Receptor-like serine/threonine-protein kinase ALE2","gi|157101298|dbj|BAF79980.1|",null,null,"x","x",{"v":3.57637772325983,"d":"3.58"},{"v":51.4439151097614,"d":"51.44"},{"v":25.0838699345452,"d":"25.08"},{"v":10.7553742998726,"d":"10.76"}]
["g41754.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0155833421715348,"d":"0.02"},{"v":0.0501374722072352,"d":"0.05"},{"v":0.0257676324209032,"d":"0.03"}]
["g75153.t1",{"$nulls":8},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|729410986|ref|XP_010556248.1|",{"$nulls":8},"X"]
["g49793.t1",{"$nulls":10},"gi|571488832|ref|XP_003538075.2|",{"$nulls":4},{"v":0.46527815743388,"d":"0.47"},{"v":5.24572616313537,"d":"5.25"},{"v":6.4017154191205,"d":"6.40"},{"v":8.48815087206079,"d":"8.49"}]
["g49826.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.112991032332279,"d":"0.11"},{"v":1.68645041060828,"d":"1.69"},{"v":0.123183063596095,"d":"0.12"},"X"]
["g49844.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.17297481019106,"d":"1.17"},{"v":0.42898803229522,"d":"0.43"},"X",null,"X"]
["g49861.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_AT1G80380.2","encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.","sp|Q944I4|GLYK_ARATH","D-glycerate 3-kinase, chloroplastic","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":65.0134082080931,"d":"65.01"},{"v":36.7604141253606,"d":"36.76"},{"v":21.7810719053893,"d":"21.78"},{"v":5.19052577331613,"d":"5.19"},null,"X"]
["g49862.t1",null,5488,16020,null,"binding","membrane",null,null,"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|90399077|emb|CAJ86299.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.590752332464692,"d":"0.59"},{"v":5.03037885137511,"d":"5.03"},{"v":1.94129689625755,"d":"1.94"},"X"]
["g49878.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.148533672899891,"d":"0.15"},{"v":0.275736127564018,"d":"0.28"},{"v":0.246670199823547,"d":"0.25"},"X",null,"X"]
["g49902.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.114954235958098,"d":"0.11"},{"v":5.07910110554518,"d":"5.08"},{"v":1.30751016083605,"d":"1.31"}]
["g49913.t1",{"$nulls":15},{"v":7.37387132211064,"d":"7.37"},{"v":13.3989432520017,"d":"13.40"},{"v":55.4810255981482,"d":"55.48"},{"v":17.4602818782522,"d":"17.46"}]
["g49930.t1","0006952:0044699","0005488:0038024","0016021:0005886","defense response:single-organism process","binding:cargo receptor activity","integral to membrane:plasma membrane","ARATHwo_AT2G20520.1","fasciclin-like arabinogalactan-protein 6 (Fla6)","sp|P74615|Y1483_SYNY3","Uncharacterized protein sll1483","gi|634879519|ref|XP_007950248.1|",null,null,"x","x",{"v":108.534164982509,"d":"108.53"},{"v":42.8875458424708,"d":"42.89"},{"v":93.9380528171461,"d":"93.94"},{"v":0,"d":"0.00"}]
["g49948.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0518810856712703,"d":"0.05"},{"v":0.144404490884862,"d":"0.14"},{"v":0.0961929590767067,"d":"0.10"},"X"]
["g45181.t1","0006094:0016310","0016301:0004612:0005524",5737,"gluconeogenesis:phosphorylation","kinase activity:phosphoenolpyruvate carboxykinase (ATP) activity:ATP binding","cytoplasm",{"$nulls":4},"gi|2827717|emb|CAA16690.1|",{"$nulls":4},{"v":15.1018206596186,"d":"15.10"},{"v":0,"d":"0.00"},{"v":0.234172598501729,"d":"0.23"},{"v":0.36285799020575,"d":"0.36"}]
["g45209.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.42893594762291,"d":"0.43"},{"v":0.0822766224150907,"d":"0.08"}]
["g45217.t1",8152,null,null,"metabolic process",null,null,"ARATHwo_AT1G33270.1","Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Patatin (InterPro:IPR002641); Has 497 Blast hits to 497 proteins in 121 species: Archae - 0; Bacteria - 10; Metazoa - 345; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).","sp|Q3V1D5|PLPL1_MOUSE","Patatin-like phospholipase domain-containing protein 1","gi|298707860|emb|CBJ30266.1|",{"$nulls":4},{"v":1.76910964191894,"d":"1.77"},{"v":2.37162203746731,"d":"2.37"},{"v":0.88262402121422,"d":"0.88"},{"v":0,"d":"0.00"}]
["g45234.t1","0034645:0090304",null,null,"cellular macromolecule biosynthetic process:nucleic acid metabolic process",{"$nulls":6},"gi|310753565|gb|ADP20179.1|",{"$nulls":9},"X"]
["g45249.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|593693396|ref|XP_007147219.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.612522179059185,"d":"0.61"},{"v":0,"d":"0.00"}]
["g45267.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.240679440661443,"d":"0.24"},{"v":0,"d":"0.00"}]
["g41783.t1",{"$nulls":6},"ARATHwo_AT5G01380.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G38250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9SDW0|TGT3A_ARATH","Trihelix transcription factor GT-3a","gi|116789822|gb|ABK25400.1|","x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.151393365604781,"d":"0.15"},{"v":0,"d":"0.00"}]
["g41805.t1",{"$nulls":6},"ARATHwo_AT3G48380.3","Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (InterPro:IPR012462).","sp|Q0INW1|UFSP_ORYSJ","Probable Ufm1-specific protease","gi|548855863|gb|ERN13726.1|",{"$nulls":4},{"v":1.87870605174136,"d":"1.88"},{"v":2.0704734569308,"d":"2.07"},{"v":0.856951736423243,"d":"0.86"},{"v":1.02576578562436,"d":"1.03"}]
["g42040.t1",{"$nulls":6},"ARATHwo_AT5G47820.1","encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.","sp|A2A870|FBF1_MOUSE","Fas-binding factor 1","gi|902864690|gb|KNB46636.1|",{"$nulls":4},{"v":0.011733671810142,"d":"0.01"},{"v":0.0523489969833379,"d":"0.05"},{"v":8.65767125074779,"d":"8.66"},{"v":0.565583125351206,"d":"0.57"}]
["g42057.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|571561340|ref|XP_006605040.1|",{"$nulls":9},"X"]
["g42073.t1",{"$nulls":10},"gi|302780659|ref|XP_002972104.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":2.09534084930114,"d":"2.10"},{"v":0,"d":"0.00"}]
["g42086.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.676364105835373,"d":"0.68"},{"v":2.0330875746179,"d":"2.03"},{"v":1.29402480157967,"d":"1.29"},null,"X","X"]
["g42105.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|657997735|ref|XP_008391257.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.184510566160109,"d":"0.18"},{"v":0.27511726963524,"d":"0.28"},{"v":0.0518999287358603,"d":"0.05"},"X"]
["g42123.t1","0006333:0006278:0006508:0006310","0003964:0003677:0003682:0003723:0004190",null,"chromatin assembly or disassembly:RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:chromatin binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|P14350|POL_FOAMV","Pro-Pol polyprotein","gi|674229542|gb|KFK23327.1|",{"$nulls":4},{"v":0.0476229646843752,"d":"0.05"},{"v":0.397444735719996,"d":"0.40"},{"v":2.47565321367064,"d":"2.48"},{"v":0.270848399678402,"d":"0.27"},"X"]
["g42140.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.146500076794643,"d":"0.15"},{"v":0.815814840277092,"d":"0.82"},{"v":0,"d":"0.00"},"X"]
["g42158.t1",{"$nulls":6},"ARATHwo_AT2G23470.1","ROOT UV-B SENSITIVE 4 (RUS4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT5G49820.1); Has 409 Blast hits to 406 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 58; Plants - 179; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).","sp|Q67YT8|RUS4_ARATH","Protein root UVB sensitive 4","gi|168013684|ref|XP_001759421.1|",null,null,"x","x",{"v":0.802324550975734,"d":"0.80"},{"v":2.14516047158155,"d":"2.15"},{"v":2.29482232569629,"d":"2.29"},{"v":2.62851735113206,"d":"2.63"}]
["g45633.t1","0044238:0044763:0019684:1901564:0006796:0044281",null,"0042651:0009534","primary metabolic process:single-organism cellular process:photosynthesis, light reaction:organonitrogen compound metabolic process:phosphate-containing compound metabolic process:small molecule metabolic process",null,"thylakoid membrane:chloroplast thylakoid",null,null,"sp|P49107|PSAN_ARATH","Photosystem I reaction center subunit N, chloroplastic","gi|224080971|ref|XP_002306249.1|",null,"x","x","x",{"v":410.472754437305,"d":"410.47"},{"v":100.15127792554,"d":"100.15"},{"v":72.311197876551,"d":"72.31"},{"v":2.79615050604825,"d":"2.80"}]
["g45653.t1",{"$nulls":6},"ARATHwo_AT5G21222.1","protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), CBL-interacting protein kinase (InterPro:IPR020660), Pentatricopeptide repeat (InterPro:IPR002885), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G25630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q8S9D1|PP395_ARATH","Pentatricopeptide repeat-containing protein At5g21222","gi|545360704|ref|XP_005645709.1|",null,"x","x","x",{"v":48.4342299838782,"d":"48.43"},{"v":7.06111723904465,"d":"7.06"},{"v":8.2772719730008,"d":"8.28"},{"v":6.07707653808399,"d":"6.08"}]
["g45666.t1",null,5488,16020,null,"binding","membrane",null,null,"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|595885005|ref|XP_007213082.1|",{"$nulls":4},{"v":0.0132281958639661,"d":"0.01"},{"v":0.790043742872504,"d":"0.79"},{"v":8.52353626951486,"d":"8.52"},{"v":1.35886893197874,"d":"1.36"},null,"X"]
["g45682.t1",{"$nulls":15},{"v":0.290027808312898,"d":"0.29"},{"v":0.163578207479205,"d":"0.16"},{"v":0.335281769404698,"d":"0.34"},{"v":0,"d":"0.00"},null,"X","X"]
["g45698.t1",null,5488,null,null,"binding",null,"ARATHwo_AT3G58690.1","Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink).","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.564918358216955,"d":"0.56"},{"v":7.78585290758266,"d":"7.79"},{"v":2.10285495203916,"d":"2.10"},{"v":0.39561788937425,"d":"0.40"}]
["g45715.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.105164020614607,"d":"0.11"},{"v":0.191664497367668,"d":"0.19"},"X",null,"X"]
["g45722.t1",{"$nulls":13},"x","x",{"v":36.0845224642976,"d":"36.08"},{"v":61.5870361033849,"d":"61.59"},{"v":65.2837484547931,"d":"65.28"},{"v":109.527917062176,"d":"109.53"}]
["g44368.t1",{"$nulls":6},"ARATHwo_AT1G05460.1","Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.","sp|Q0V8H6|MOV10_BOVIN","Putative helicase MOV-10","gi|545823669|ref|XP_005655498.1|",null,null,"x","x",{"v":0.883173688264811,"d":"0.88"},{"v":1.02717729928112,"d":"1.03"},{"v":0.692352436915429,"d":"0.69"},{"v":3.63052546198424,"d":"3.63"}]
["g44382.t1","0034645:0090304",null,null,"cellular macromolecule biosynthetic process:nucleic acid metabolic process",{"$nulls":4},"sp|Q8K259|GIN1_MOUSE","Gypsy retrotransposon integrase-like protein 1","gi|659121350|ref|XP_008460615.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":2.81993644502582,"d":"2.82"},{"v":5.49717385473902,"d":"5.50"},{"v":4.27345437188272,"d":"4.27"},"X"]
["g44398.t1","0006414:0032786","0003746:0008270",5634,"translational elongation:positive regulation of DNA-dependent transcription, elongation","translation elongation factor activity:zinc ion binding","nucleus","ARATHwo_AT5G63670.1","SPT4 homolog 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q94C60|SPT42_ARATH","Transcription elongation factor SPT4 homolog 2","gi|302813002|ref|XP_002988187.1|",null,"x","x","x",{"v":45.4605011999381,"d":"45.46"},{"v":21.0724558520905,"d":"21.07"},{"v":16.2594023032196,"d":"16.26"},{"v":26.0866162440386,"d":"26.09"}]
["g44415.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.051646224479533,"d":"0.05"},{"v":4.05012798083308,"d":"4.05"},{"v":0,"d":"0.00"},"X",null,"X"]
["g44424.t1",null,16772,16020,null,"transferase activity, transferring phosphorus-containing groups","membrane","ARATHwo_AT2G43700.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT2G43690.1); Has 122686 Blast hits to 121162 proteins in 4906 species: Archae - 111; Bacteria - 13587; Metazoa - 45416; Fungi - 10588; Plants - 34514; Viruses - 415; Other Eukaryotes - 18055 (source: NCBI BLink).","sp|O22833|LRK54_ARATH","L-type lectin-domain containing receptor kinase V.4","gi|157101304|dbj|BAF79983.1|"]
["g44448.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923670453|ref|XP_013650493.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0262035217720534,"d":"0.03"},{"v":0.0208385628172439,"d":"0.02"},{"v":0.048585179760104,"d":"0.05"},null,"X"]
["g44463.t1",null,5488,16023,null,"binding","cytoplasmic membrane-bounded vesicle","ARATHwo_AT3G12010.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P31792|POL_FENV1","Pol polyprotein","gi|923749700|ref|XP_013673944.1|",{"$nulls":4},{"v":2.42977721092827,"d":"2.43"},{"v":1.38993112347087,"d":"1.39"},{"v":6.07792833154754,"d":"6.08"},{"v":1.38017453556635,"d":"1.38"},null,"X"]
["g44478.t1"]
["g44494.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.169130561062626,"d":"0.17"},{"v":0.0825974098180997,"d":"0.08"},"X",null,"X"]
["g44507.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0752051917125597,"d":"0.08"},{"v":0.242457049221235,"d":"0.24"},{"v":0,"d":"0.00"},"X",null,"X"]
["g44529.t1",null,5488,9536,null,"binding","plastid","ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|147826806|emb|CAN63950.1|",{"$nulls":4},{"v":47.8021829716113,"d":"47.80"},{"v":18.9515082193867,"d":"18.95"},{"v":16.1001015065556,"d":"16.10"},{"v":2.14415233437747,"d":"2.14"},null,"X"]
["g44546.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.",null,null,"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.236899935244843,"d":"0.24"},{"v":1.44664930691011,"d":"1.45"},{"v":0.318227496974268,"d":"0.32"}]
["g46225.t1",{"$nulls":15},{"v":0.171815920796239,"d":"0.17"},{"v":0,"d":"0.00"},{"v":0.200482215363894,"d":"0.20"},{"v":0,"d":"0.00"}]
["g46243.t1",{"$nulls":12},"x","x","x",{"v":12.3524719294625,"d":"12.35"},{"v":3.27336480597793,"d":"3.27"},{"v":3.16264391215455,"d":"3.16"},{"v":0.485682933798111,"d":"0.49"}]
["g46259.t1"]
["g46278.t1"]
["g46279.t1"]
["g44563.t1"]
["g75472.t1"]
["g44595.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0.654132412282713,"d":"0.65"},{"v":1.01755019028548,"d":"1.02"},{"v":8.7063262926494,"d":"8.71"},{"v":0.628843408298574,"d":"0.63"},"X"]
["g44616.t1",{"$nulls":15},{"v":0.127858437525135,"d":"0.13"},{"v":0,"d":"0.00"},{"v":0.514596341158256,"d":"0.51"},{"v":0,"d":"0.00"},null,"X","X"]
["g75513.t1",{"$nulls":19},"X",null,"X"]
["g44922.t1","0009908:0009933:0009628:0050789:0006464:0006405",3723,5737,"flower development:meristem structural organization:response to abiotic stimulus:regulation of biological process:cellular protein modification process:RNA export from nucleus","RNA binding","cytoplasm","ARATHwo_AT1G72560.1","Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals. PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development.","sp|Q7PC79|XPOT_ARATH","Exportin-T","gi|168032942|ref|XP_001768976.1|",null,null,"x","x",{"v":2.04155872510008,"d":"2.04"},{"v":6.50317904569775,"d":"6.50"},{"v":2.15830616364344,"d":"2.16"},{"v":12.1329967131053,"d":"12.13"}]
["g44939.t1","0071704:0044238:0044710",null,5783,"organic substance metabolic process:primary metabolic process:single-organism metabolic process",null,"endoplasmic reticulum","ARATHwo_AT3G07140.1","GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 383 Blast hits to 363 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 131; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).","sp|Q8BXQ2|PIGT_MOUSE","GPI transamidase component PIG-T","gi|720050200|ref|XP_010271693.1|",null,null,"x","x",{"v":3.4950448737262,"d":"3.50"},{"v":3.70627374840366,"d":"3.71"},{"v":1.5081111320933,"d":"1.51"},{"v":2.05845675438254,"d":"2.06"}]
["g45277.t1",{"$nulls":12},"x","x","x",{"v":89.5331999464222,"d":"89.53"},{"v":29.0422890128468,"d":"29.04"},{"v":85.4075062570199,"d":"85.41"},{"v":3.46133462448553,"d":"3.46"}]
["g46694.t1",{"$nulls":20},"X","X"]
["g46706.t1",{"$nulls":6},"ARATHwo_AT3G53970.1","proteasome inhibitor-related; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome Inhibitor PI31 (InterPro:IPR021625), PI31 proteasome regulator (InterPro:IPR013886); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48530.1); Has 3872 Blast hits to 2739 proteins in 261 species: Archae - 2; Bacteria - 242; Metazoa - 2901; Fungi - 341; Plants - 91; Viruses - 17; Other Eukaryotes - 278 (source: NCBI BLink).","sp|Q9M330|PSMF1_ARATH","Probable proteasome inhibitor","gi|586781642|ref|XP_006859110.1|",null,"x","x","x",{"v":9.77807817152166,"d":"9.78"},{"v":19.5524960300601,"d":"19.55"},{"v":45.1220209302382,"d":"45.12"},{"v":56.4928837494943,"d":"56.49"}]
["g46722.t1",null,null,"0043231:0044444:0016020",null,null,"intracellular membrane-bounded organelle:cytoplasmic part:membrane","ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|302786758|ref|XP_002975150.1|",null,null,"x","x",{"v":1.30581498211503,"d":"1.31"},{"v":1.56220182719755,"d":"1.56"},{"v":3.86769904804112,"d":"3.87"},{"v":0.753005816114583,"d":"0.75"}]
["g46738.t1",{"$nulls":15},{"v":9.40023457444495,"d":"9.40"},{"v":20.1658908031947,"d":"20.17"},{"v":7.53955627683536,"d":"7.54"},{"v":2.24395195894355,"d":"2.24"}]
["g46756.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|566156681|ref|XP_006386323.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0793746935882153,"d":"0.08"},{"v":0,"d":"0.00"}]
["g45309.t1",{"$nulls":15},{"v":0.334131017780996,"d":"0.33"},{"v":0.794546087991467,"d":"0.79"},{"v":1.86417811925617,"d":"1.86"},{"v":1.22499431116065,"d":"1.22"}]
["g45316.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a","gi|270016623|gb|EFA13069.1|",{"$nulls":4},{"v":0.0533297880937848,"d":"0.05"},{"v":0.189112337394382,"d":"0.19"},{"v":1.02138020537226,"d":"1.02"},{"v":0.380718678718415,"d":"0.38"},"X"]
["g45333.t1",{"$nulls":19},"X",null,"X"]
["g45347.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT4G23260.1","Encodes a cysteine-rich receptor-like protein kinase.","sp|Q8RX80|CRK18_ARATH","Cysteine-rich receptor-like protein kinase 18","gi|747044279|ref|XP_011088213.1|",{"$nulls":4},{"v":0.284545879555684,"d":"0.28"},{"v":0.094319332724079,"d":"0.09"},{"v":0.300598514249973,"d":"0.30"},{"v":0,"d":"0.00"}]
["g45365.t1",{"$nulls":10},"gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":0.429529932546376,"d":"0.43"},{"v":0.824457445045312,"d":"0.82"},{"v":1.51623998501335,"d":"1.52"},{"v":0,"d":"0.00"}]
["g45376.t1",{"$nulls":8},"sp|Q0VGK2|TT39C_RAT","Tetratricopeptide repeat protein 39C","gi|697188822|ref|XP_009603456.1|",{"$nulls":4},{"v":0.016820021722148,"d":"0.02"},{"v":0.299342020188345,"d":"0.30"},{"v":11.7125071125247,"d":"11.71"},{"v":0.192703702356396,"d":"0.19"},null,"X"]
["g75663.t1",{"$nulls":19},"X",null,"X"]
["g45412.t1","0032259:0006189","0008168:0004644","0005739:0009507","methylation:'de novo' IMP biosynthetic process","methyltransferase activity:phosphoribosylglycinamide formyltransferase activity","mitochondrion:chloroplast","ARATHwo_AT1G31220.1","N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide","sp|P52423|PUR3_VIGUN","Phosphoribosylglycinamide formyltransferase, chloroplastic","gi|168041124|ref|XP_001773042.1|",null,null,"x","x",{"v":7.90598348171039,"d":"7.91"},{"v":3.53003264215383,"d":"3.53"},{"v":2.47748303682351,"d":"2.48"},{"v":1.02381249760147,"d":"1.02"}]
["g45428.t1",{"$nulls":20},"X","X"]
["g45442.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0428312394592527,"d":"0.04"},{"v":0.268484934957913,"d":"0.27"},{"v":0.0932556058183743,"d":"0.09"},"X",null,"X"]
["g45457.t1",6412,3735,5840,"translation","structural constituent of ribosome","ribosome","ARATHwo_AT3G23390.1","Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L44e (InterPro:IPR000552), Ribosomal protein, zinc-binding domain (InterPro:IPR011332); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT4G14320.1); Has 1023 Blast hits to 1019 proteins in 360 species: Archae - 169; Bacteria - 1; Metazoa - 377; Fungi - 167; Plants - 132; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).","sp|Q96499|RL44_GOSHI","60S ribosomal protein L44","gi|168034063|ref|XP_001769533.1|",null,"x","x","x",{"v":2932.50182856179,"d":"2932.50"},{"v":803.719430605917,"d":"803.72"},{"v":402.929114760898,"d":"402.93"},{"v":708.700399311043,"d":"708.70"}]
["g45476.t1","0045893:0035304:0010207:0051604:0009902:0051607:0019761:0035196:0006508:0010267:0042793:0006364:0010027",8236,"0009941:0016021:0009535","positive regulation of transcription, DNA-dependent:regulation of protein dephosphorylation:photosystem II assembly:protein maturation:chloroplast relocation:defense response to virus:glucosinolate biosynthetic process:production of miRNAs involved in gene silencing by miRNA:proteolysis:production of ta-siRNAs involved in RNA interference:transcription from plastid promoter:rRNA processing:thylakoid membrane organization","serine-type peptidase activity","chloroplast envelope:integral to membrane:chloroplast thylakoid membrane","ARATHwo_AT3G24590.1","Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33).","sp|Q8H0W1|PLSP1_ARATH","Chloroplast processing peptidase","gi|168040838|ref|XP_001772900.1|",{"$nulls":4},{"v":2.47855685745597,"d":"2.48"},{"v":5.70946126756407,"d":"5.71"},{"v":4.26921235748035,"d":"4.27"},{"v":1.10030555541827,"d":"1.10"}]
["g45491.t1","0050896:0031047",null,null,"response to stimulus:gene silencing by RNA",null,null,"ARATHwo_AT5G09860.1","Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.","sp|Q93VM9|THOC1_ARATH","THO complex subunit 1","gi|9758964|dbj|BAB09407.1|",{"$nulls":4},{"v":21.0779269519063,"d":"21.08"},{"v":18.4116139985483,"d":"18.41"},{"v":28.7322021742573,"d":"28.73"},{"v":18.0562200068366,"d":"18.06"}]
["g45507.t1",{"$nulls":13},"x","x",{"v":2.86929267751807,"d":"2.87"},{"v":56.0652105679261,"d":"56.07"},{"v":7.12920906286464,"d":"7.13"},{"v":0.82222946241263,"d":"0.82"}]
["g45524.t1",{"$nulls":8},"sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|71148691|gb|AAZ28943.1|",{"$nulls":4},{"v":0.0422997018748972,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.264284151949777,"d":"0.26"},{"v":0,"d":"0.00"},null,"X"]
["g45542.t1",{"$nulls":6},"ARATHwo_AT5G63135.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":19.9973904472514,"d":"20.00"},{"v":8.35563441298244,"d":"8.36"},{"v":5.18382284690049,"d":"5.18"},{"v":9.51206658859578,"d":"9.51"}]
["g45561.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|670387089|ref|XP_008674164.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.078843576522295,"d":"0.08"},{"v":0,"d":"0.00"},"X"]
["g45571.t1",{"$nulls":15},{"v":2.58211128674507,"d":"2.58"},{"v":1.0351586248451,"d":"1.04"},{"v":5.09654956021511,"d":"5.10"},{"v":4.72821602088534,"d":"4.73"}]
["g45588.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.042032574603738,"d":"0.04"},{"v":0.120809553451394,"d":"0.12"},{"v":0.049168774853919,"d":"0.05"},"X"]
["g45604.t1"]
["g45621.t1",{"$nulls":8},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.0505272931272247,"d":"0.05"},{"v":0.120662331878698,"d":"0.12"},{"v":0.0857912268125163,"d":"0.09"},null,"X"]
["g45627.t1","0006810:0044763:0048513",null,44424,"transport:single-organism cellular process:organ development",null,"intracellular part","ARATHwo_AT5G55540.1","Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.","sp|Q9FJ57|TRN1_ARATH","Protein TORNADO 1","gi|743936538|ref|XP_011012660.1|",null,null,"x","x",{"v":5.02069995280637,"d":"5.02"},{"v":7.16086725936026,"d":"7.16"},{"v":5.46095031158379,"d":"5.46"},{"v":7.38128918590342,"d":"7.38"}]
["g45750.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.139029099178118,"d":"0.14"},{"v":0,"d":"0.00"}]
["g45767.t1",{"$nulls":19},"X",null,"X"]
["g48297.t1",{"$nulls":6},"ARATHwo_AT1G67340.1","HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).","sp|Q9FYF9|FB76_ARATH","F-box protein At1g67340","gi|294461488|gb|ADE76305.1|",null,null,"x","x",{"v":27.3172412021122,"d":"27.32"},{"v":17.3795959589539,"d":"17.38"},{"v":17.5753929137549,"d":"17.58"},{"v":11.8829267351326,"d":"11.88"}]
["g48315.t1",6259,null,null,"DNA metabolic process",{"$nulls":4},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|472580248|gb|EMS18080.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.068191455423588,"d":"0.07"},{"v":0,"d":"0.00"},"X"]
["g48324.t1",105,4424,9507,"histidine biosynthetic process","imidazoleglycerol-phosphate dehydratase activity","chloroplast","ARATHwo_AT3G22425.2","Encodes imidazoleglycerolphosphate dehydratase.","sp|O23346|HIS5B_ARATH","Imidazoleglycerol-phosphate dehydratase 2, chloroplastic","gi|778725903|ref|XP_011659020.1|",null,"x",null,"x",{"v":19.0895261647298,"d":"19.09"},{"v":5.66046059482404,"d":"5.66"},{"v":2.74104890007993,"d":"2.74"},{"v":0.346581742465088,"d":"0.35"}]
["g48350.t1"]
["g48366.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0558106879390933,"d":"0.06"},{"v":0.230314608735094,"d":"0.23"},{"v":0.198563746859676,"d":"0.20"},null,"X"]
["g45778.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|77555663|gb|ABA98459.1|",{"$nulls":9},"X"]
["g45779.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.141757753612404,"d":"0.14"},{"v":1.83569869638217,"d":"1.84"},{"v":10.6838353729014,"d":"10.68"},{"v":5.18486921285555,"d":"5.18"},"X"]
["g45805.t1",{"$nulls":15},{"v":0.138406441351061,"d":"0.14"},{"v":0.248029891304018,"d":"0.25"},{"v":1.60500132774561,"d":"1.61"},{"v":0,"d":"0.00"}]
["g45811.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":9},"X"]
["g45826.t1",{"$nulls":15},{"v":0.055311055112822,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.175024440357347,"d":"0.18"},{"v":0.241039597741271,"d":"0.24"},"X",null,"X"]
["g45838.t1",{"$nulls":8},"sp|P14078|POL_HTL1C","Gag-Pro-Pol polyprotein","gi|727650546|ref|XP_010495970.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0212761765659797,"d":"0.02"},{"v":0.16922137872633,"d":"0.17"},{"v":0.318361039731067,"d":"0.32"},"X"]
["g45854.t1",{"$nulls":8},"sp|D4AV98|A0107_ARTBC","Uncharacterized secreted protein ARB_00107","gi|258570413|ref|XP_002544010.1|",null,"x",null,"x",{"v":117.76191589546,"d":"117.76"},{"v":12.1494968586432,"d":"12.15"},{"v":17.7584229554199,"d":"17.76"},{"v":157.482458639047,"d":"157.48"}]
["g45886.t1",{"$nulls":6},"ARATHwo_AT5G19580.1","glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin-like fold (InterPro:IPR013783), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G67290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":9},"X"]
["g45889.t1"]
["g45906.t1",{"$nulls":13},"x","x",{"v":0.0700505852207441,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0.361326610523937,"d":"0.36"},{"v":0,"d":"0.00"}]
["g45923.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.051279945089606,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.085658840871402,"d":"0.09"},null,"X","X"]
["g45938.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0226548166592041,"d":"0.02"},{"v":0.049963642925069,"d":"0.05"},{"v":0,"d":"0.00"}]
["g48668.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.178142233118026,"d":"0.18"},{"v":0,"d":"0.00"},"X",null,"X"]
["g48688.t1",{"$nulls":13},"x","x",{"v":6.81465240828706,"d":"6.81"},{"v":3.56004899914218,"d":"3.56"},{"v":2.46959845014759,"d":"2.47"},{"v":1.59331768601811,"d":"1.59"},"X",null,"X"]
["g48704.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.307901430809833,"d":"0.31"},{"v":0,"d":"0.00"}]
["g48721.t1",{"$nulls":6},"ARATHwo_AT1G43860.1","sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: Ribosome maturation protein SBDS, C-terminal (InterPro:IPR018978), Ribosome maturation protein SBDS (InterPro:IPR002140), Ribosome maturation protein SBDS, N-terminal (InterPro:IPR019783), Ribosome maturation protein SBDS, conserved site (InterPro:IPR018023); Has 1053 Blast hits to 1042 proteins in 349 species: Archae - 219; Bacteria - 2; Metazoa - 264; Fungi - 287; Plants - 65; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).","sp|Q86KZ5|SBDS_DICDI","Ribosome maturation protein SBDS","gi|302816177|ref|XP_002989768.1|",null,null,"x","x",{"v":17.6350975063878,"d":"17.64"},{"v":11.2819305772892,"d":"11.28"},{"v":12.1972077574813,"d":"12.20"},{"v":21.3234852725365,"d":"21.32"}]
["g48738.t1",{"$nulls":19},"X",null,"X"]
["g48755.t1",{"$nulls":15},{"v":3.50833494473259,"d":"3.51"},{"v":0.160789637638421,"d":"0.16"},{"v":0.210907958883624,"d":"0.21"},{"v":0,"d":"0.00"}]
["g45963.t1",{"$nulls":13},"x","x",{"v":1.11408655469921,"d":"1.11"},{"v":0.934370405027757,"d":"0.93"},{"v":1.65890843744759,"d":"1.66"},{"v":1.06419416559251,"d":"1.06"}]
["g45974.t1",{"$nulls":8},"sp|Q09575|YRD6_CAEEL","Uncharacterized protein K02A2.6","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.047641184531991,"d":"0.05"},{"v":1.56216311636147,"d":"1.56"},{"v":0,"d":"0.00"},"X"]
["g45992.t1",{"$nulls":8},"sp|Q5CZR5|NATTL_DANRE","Natterin-like protein","gi|328835778|dbj|BAK19070.1|",null,"x","x","x",{"v":98.3176906924003,"d":"98.32"},{"v":0.061197281457458,"d":"0.06"},{"v":0.927142305502618,"d":"0.93"},{"v":0,"d":"0.00"}]
["g46009.t1","0006278:0006310","0003964:0003677:0003723",null,"RNA-dependent DNA replication:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding",null,"ARATHwo_AT3G19170.1","Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers","sp|Q46205|HYPA_CLOPE","Protein HypA","gi|727131291|emb|CEG84672.1|",{"$nulls":4},{"v":3.61042086038181,"d":"3.61"},{"v":0.513477143099123,"d":"0.51"},{"v":14.5213580075491,"d":"14.52"},{"v":5.81922381444581,"d":"5.82"}]
["g46171.t1",{"$nulls":8},"sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|923851487|ref|XP_013704088.1|",{"$nulls":9},"X"]
["g46196.t1",{"$nulls":10},"gi|168003417|ref|XP_001754409.1|"]
["g46204.t1",{"$nulls":15},{"v":0.636715110410884,"d":"0.64"},{"v":0.458570585415712,"d":"0.46"},{"v":4.72670513971931,"d":"4.73"},{"v":2.3654429511217,"d":"2.37"}]
["g46291.t1"]
["g46306.t1",70,19237,"0043505:0000776:0005634","mitotic sister chromatid segregation","centromeric DNA binding","centromere-specific nucleosome:kinetochore:nucleus","ARATHwo_AT5G10980.1","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q0MXD1|CENPA_MILFA","Histone H3-like centromeric protein CSE4","gi|541048292|gb|ERG87004.1|",{"$nulls":4},{"v":0.0447682362479065,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.0574812052284807,"d":"0.06"},{"v":0,"d":"0.00"}]
["g46322.t1",{"$nulls":8},"sp|P08472|M130_STRPU","Mesenchyme-specific cell surface glycoprotein","gi|629663553|ref|XP_007805427.1|",{"$nulls":4},{"v":0.438058459423522,"d":"0.44"},{"v":4.90503063061567,"d":"4.91"},{"v":3.67719119324617,"d":"3.68"},{"v":2.06212189367932,"d":"2.06"}]
["g49089.t1",{"$nulls":6},"ARATHwo_AT1G43260.1","hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|57863833|gb|AAW56879.1|",{"$nulls":4},{"v":0.0469437753798841,"d":"0.05"},{"v":0.0571953540252825,"d":"0.06"},{"v":1.6349242136815,"d":"1.63"},{"v":0.383511701702311,"d":"0.38"},null,"X"]
["g49112.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|752340007|gb|KIN99114.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0581476259186917,"d":"0.06"},{"v":0.934888607890403,"d":"0.93"},{"v":0,"d":"0.00"},"X"]
["g49130.t1",{"$nulls":15},{"v":0.107598071751038,"d":"0.11"},{"v":0.0247257665335376,"d":"0.02"},{"v":0.318307372003595,"d":"0.32"},{"v":0.253854183339583,"d":"0.25"},"X",null,"X"]
["g49147.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|670382421|ref|XP_008671973.1|",{"$nulls":4},{"v":0.0242343696707378,"d":"0.02"},{"v":0.16253598924822,"d":"0.16"},{"v":0.619182138084696,"d":"0.62"},{"v":0.055047941463746,"d":"0.06"},"X"]
["g46325.t1",{"$nulls":6},"ARATHwo_AT4G17690.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G47000.1); Has 4832 Blast hits to 4807 proteins in 324 species: Archae - 0; Bacteria - 6; Metazoa - 12; Fungi - 404; Plants - 4331; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).","sp|O23609|PER41_ARATH","Peroxidase 41","gi|75317445|sp|Q4W1I9.1|PER2_ZINVI",null,null,"x","x",{"v":1.93490676360743,"d":"1.93"},{"v":16.8634946818609,"d":"16.86"},{"v":1.17292843519455,"d":"1.17"},{"v":0,"d":"0.00"}]
["g46340.t1"]
["g46359.t1","0009853:0015977:0015979:0055114","0016984:0004497",9536,"photorespiration:carbon fixation:photosynthesis:oxidation-reduction process","ribulose-bisphosphate carboxylase activity:monooxygenase activity","plastid","ARATHwo_AT1G67090.1","Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.","sp|P16031|RBS_LARLA","Ribulose bisphosphate carboxylase small chain, chloroplastic","gi|694416097|ref|XP_009336182.1|",{"$nulls":4},{"v":1432.71551456622,"d":"1432.72"},{"v":755.86386278752,"d":"755.86"},{"v":273.128095150822,"d":"273.13"},{"v":1.28222429465914,"d":"1.28"}]
["g46376.t1",{"$nulls":15},{"v":0.052764404537258,"d":"0.05"},{"v":0.220944581377998,"d":"0.22"},{"v":1.35998714854933,"d":"1.36"},{"v":0.52071098382593,"d":"0.52"},"X",null,"X"]
["g46393.t1"]
["g46409.t2",{"$nulls":6},"ARATHwo_AT1G69550.1","disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).","sp|Q9FI14|TAO1_ARATH","Disease resistance protein TAO1","gi|168043924|ref|XP_001774433.1|",null,null,"x","x",{"v":0.891884828984846,"d":"0.89"},{"v":1.91437902444089,"d":"1.91"},{"v":1.64530526470824,"d":"1.65"},{"v":0,"d":"0.00"}]
["g46426.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.282311382569983,"d":"0.28"},{"v":0.101290265335145,"d":"0.10"},"X",null,"X"]
["g76197.t1",{"$nulls":6},"ARATHwo_AT4G15880.1","EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.","sp|Q8WP32|SENP5_MACFA","Sentrin-specific protease 5","gi|242025267|ref|XP_002433047.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.3851421877802,"d":"0.39"},{"v":0,"d":"0.00"},"X"]
["g46458.t1",6259,null,null,"DNA metabolic process",{"$nulls":4},"sp|O83635|SBCC_TREPA","Nuclease SbcCD subunit C","gi|168003553|ref|XP_001754477.1|",{"$nulls":4},{"v":1.52575374308796,"d":"1.53"},{"v":3.27465270004747,"d":"3.27"},{"v":1.99099766825833,"d":"1.99"},{"v":1.68705786281284,"d":"1.69"}]
["g46593.t1",{"$nulls":15},{"v":0.0459395364702262,"d":"0.05"},{"v":0.052745306574955,"d":"0.05"},{"v":0.228820545129668,"d":"0.23"},{"v":0,"d":"0.00"}]
["g46607.t1",null,46872,null,null,"metal ion binding",{"$nulls":3},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|923854260|ref|XP_013704502.1|",{"$nulls":8},"X"]
["g49462.t1",{"$nulls":6},"ARATHwo_AT4G36690.1","ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1); Has 66106 Blast hits to 34639 proteins in 1663 species: Archae - 71; Bacteria - 4965; Metazoa - 34951; Fungi - 7331; Plants - 6616; Viruses - 285; Other Eukaryotes - 11887 (source: NCBI BLink).","sp|Q6PGZ3|MIPT3_DANRE","TRAF3-interacting protein 1","gi|168030659|ref|XP_001767840.1|",null,null,"x","x",{"v":6.18575537191186,"d":"6.19"},{"v":7.2888560356409,"d":"7.29"},{"v":6.6248610787824,"d":"6.62"},{"v":10.5213802436815,"d":"10.52"}]
["g49466.t1","0006801:0044710",16491,null,"superoxide metabolic process:single-organism metabolic process","oxidoreductase activity",null,"ARATHwo_AT3G10920.1","manganese superoxide dismutase (MSD1)","sp|O81235|SODM1_ARATH","Superoxide dismutase [Mn] 1, mitochondrial","gi|33521626|gb|AAQ20004.1|",null,"x","x","x",{"v":199.275649851042,"d":"199.28"},{"v":58.1948454287931,"d":"58.19"},{"v":15.1725799881005,"d":"15.17"},{"v":2.50494727276039,"d":"2.50"}]
["g49494.t1",{"$nulls":13},"x","x",{"v":4.67435494134153,"d":"4.67"},{"v":3.29025176186511,"d":"3.29"},{"v":2.35025066990089,"d":"2.35"},{"v":0.44600447202562,"d":"0.45"}]
["g49495.t1",{"$nulls":6},"ARATHwo_AT1G59520.3","Encodes CW7.","sp|Q801S4|K0930_XENLA","Uncharacterized protein KIAA0930 homolog","gi|255537988|ref|XP_002510059.1|",null,null,"x","x",{"v":15.5165241380385,"d":"15.52"},{"v":10.0491506147795,"d":"10.05"},{"v":6.98772210590176,"d":"6.99"},{"v":5.12748074115739,"d":"5.13"}]
["g49512.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.143144539766105,"d":"0.14"},{"v":0.080282829281503,"d":"0.08"},{"v":0,"d":"0.00"}]
["g46625.t2",{"$nulls":15},{"v":2.42959525192464,"d":"2.43"},{"v":3.306287956463,"d":"3.31"},{"v":8.96364089658723,"d":"8.96"},{"v":2.53050607899313,"d":"2.53"}]
["g46647.t2",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.165114088987627,"d":"0.17"},{"v":0,"d":"0.00"}]
["g46656.t1"]
["g46673.t1","0006508:0015074","0003676:0004190",5634,"proteolysis:DNA integration","nucleic acid binding:aspartic-type endopeptidase activity","nucleus",null,null,"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|813213903|dbj|GAO47244.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0312659279980605,"d":"0.03"},{"v":0.160488486959568,"d":"0.16"},{"v":0,"d":"0.00"},null,"X"]
["g46687.t1"]
["g46783.t1",{"$nulls":15},{"v":0.0712902789598695,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0.0839196196111623,"d":"0.08"},{"v":0,"d":"0.00"},"X",null,"X"]
["g46810.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.066704134363989,"d":"0.07"},{"v":0,"d":"0.00"}]
["g46817.t2",{"$nulls":15},{"v":0.0564861758968899,"d":"0.06"},{"v":0.0379720314915417,"d":"0.04"},{"v":0.437319664177538,"d":"0.44"},{"v":0.0642478943531273,"d":"0.06"}]
["g49958.t1",{"$nulls":10},"gi|71148691|gb|AAZ28943.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.153957447577461,"d":"0.15"},{"v":0.0490784621138722,"d":"0.05"},{"v":0.093271197793933,"d":"0.09"},null,"X"]
["g49972.t1",{"$nulls":6},"ARATHwo_AT2G34900.1","Encodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors. Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination.","sp|Q84XV2|GTE1_ARATH","Transcription factor GTE1","gi|168002796|ref|XP_001754099.1|",{"$nulls":4},{"v":19.585785499838,"d":"19.59"},{"v":45.4371441374697,"d":"45.44"},{"v":50.0601311447621,"d":"50.06"},{"v":24.0301606219722,"d":"24.03"}]
["g49987.t1",null,null,5739,null,null,"mitochondrion","ARATHwo_AT3G15090.1","GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1); Has 32555 Blast hits to 32407 proteins in 2523 species: Archae - 489; Bacteria - 20756; Metazoa - 1208; Fungi - 3376; Plants - 855; Viruses - 0; Other Eukaryotes - 5871 (source: NCBI BLink).","sp|Q7T3C7|RT4I1_DANRE","Reticulon-4-interacting protein 1 homolog, mitochondrial","gi|148908744|gb|ABR17479.1|",null,null,"x","x",{"v":3.47220766109747,"d":"3.47"},{"v":9.19242642478244,"d":"9.19"},{"v":7.31632054107723,"d":"7.32"},{"v":12.9023347328693,"d":"12.90"}]
["g50004.t1",6259,"0046872:0003824",null,"DNA metabolic process","metal ion binding:catalytic activity",{"$nulls":5},"gi|727509438|ref|XP_010430902.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.101338570872983,"d":"0.10"},{"v":0.1785956065423,"d":"0.18"},{"v":0.109796600897062,"d":"0.11"},null,"X"]
["g50020.t1",{"$nulls":6},"ARATHwo_AT1G09890.1","Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09910.1); Has 301 Blast hits to 285 proteins in 64 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 84; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|Q8RJP2|RHIE_DICD3","Rhamnogalacturonate lyase","gi|242082612|ref|XP_002441731.1|"]
["g46836.t1",{"$nulls":12},"x","x","x",{"v":25.717572670314,"d":"25.72"},{"v":9.97758181160467,"d":"9.98"},{"v":3.22320364201826,"d":"3.22"},{"v":1.07846338969789,"d":"1.08"}]
["g46852.t1",null,null,5622,null,null,"intracellular","ARATHwo_AT3G55170.1","Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1); Has 1329 Blast hits to 1329 proteins in 532 species: Archae - 155; Bacteria - 387; Metazoa - 302; Fungi - 146; Plants - 143; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).","sp|Q9M3D2|RL353_ARATH","60S ribosomal protein L35-3","gi|168031816|ref|XP_001768416.1|",null,"x","x","x",{"v":1744.35771323895,"d":"1744.36"},{"v":88.0539236059725,"d":"88.05"},{"v":49.5424207572533,"d":"49.54"},{"v":111.033835969223,"d":"111.03"}]
["g46868.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.13802629032993,"d":"0.14"},{"v":0.349942069809207,"d":"0.35"},{"v":0,"d":"0.00"}]
["g46885.t1",{"$nulls":6},"ARATHwo_AT1G33970.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G09950.1); Has 5286 Blast hits to 4352 proteins in 536 species: Archae - 103; Bacteria - 667; Metazoa - 2039; Fungi - 248; Plants - 262; Viruses - 31; Other Eukaryotes - 1936 (source: NCBI BLink).","sp|O81025|P2A03_ARATH","Putative protein PHLOEM PROTEIN 2-LIKE A3","gi|743764883|ref|XP_010912656.1|",null,null,"x","x",{"v":2.97890349111598,"d":"2.98"},{"v":4.86435838585174,"d":"4.86"},{"v":8.38942932896205,"d":"8.39"},{"v":1.84247807343806,"d":"1.84"}]
["g46901.t2",6468,"0005524:0004674",null,"protein phosphorylation","ATP binding:protein serine/threonine kinase activity",null,"ARATHwo_AT3G13670.1","Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G25760.1); Has 17131 Blast hits to 17075 proteins in 1486 species: Archae - 12; Bacteria - 5943; Metazoa - 4767; Fungi - 1425; Plants - 2358; Viruses - 214; Other Eukaryotes - 2412 (source: NCBI BLink).","sp|P40234|CKI2_SCHPO","Casein kinase I homolog 2","gi|747040657|ref|XP_011092199.1|",{"$nulls":4},{"v":11.8278106260814,"d":"11.83"},{"v":19.8671862969637,"d":"19.87"},{"v":23.5088671994433,"d":"23.51"},{"v":20.0475280248056,"d":"20.05"}]
["g47049.t1",{"$nulls":6},"ARATHwo_AT5G24740.1","INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2219 Blast hits to 1322 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 1077; Fungi - 361; Plants - 231; Viruses - 0; Other Eukaryotes - 548 (source: NCBI BLink).","sp|Q54LN2|VP13D_DICDI","Putative vacuolar protein sorting-associated protein 13D","gi|302809843|ref|XP_002986614.1|",null,null,"x","x"]
["g47065.t1",null,5488,16020,null,"binding","membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|86371679|gb|ABC94893.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.158321274842154,"d":"0.16"},{"v":0.790945213036474,"d":"0.79"},{"v":0,"d":"0.00"},"X"]
["g47082.t1",{"$nulls":8},"sp|P08361|POL_MLVCB","Gag-Pol polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0.109760800633501,"d":"0.11"},{"v":2.01327208603903,"d":"2.01"},{"v":3.45681274157293,"d":"3.46"},{"v":2.27256033558467,"d":"2.27"},"X"]
["g47100.t1",{"$nulls":10},"gi|168032636|ref|XP_001768824.1|",{"$nulls":4},{"v":7.98981128972293,"d":"7.99"},{"v":9.33087944824314,"d":"9.33"},{"v":10.4105761867665,"d":"10.41"},{"v":1.03874384520473,"d":"1.04"}]
["g54810.t1",{"$nulls":15},{"v":0.230849252119472,"d":"0.23"},{"v":0.185138695285031,"d":"0.19"},{"v":0.301871168384116,"d":"0.30"},{"v":0.218419372745208,"d":"0.22"},"X",null,"X"]
["g54823.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.244582058225118,"d":"0.24"},{"v":1.37638996615335,"d":"1.38"},{"v":0.434905442074984,"d":"0.43"}]
["g54839.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|657989954|ref|XP_008387198.1|",{"$nulls":4},{"v":0.500296639068391,"d":"0.50"},{"v":1.24759255334747,"d":"1.25"},{"v":4.09140160322656,"d":"4.09"},{"v":1.6153015357832,"d":"1.62"}]
["g54856.t1",{"$nulls":6},"ARATHwo_AT1G43260.1","hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.050935155081635,"d":"0.05"},{"v":0,"d":"0.00"},"X"]
["g54873.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|4235644|gb|AAD13304.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.430159603616377,"d":"0.43"},{"v":0.116092021160904,"d":"0.12"},"X"]
["g54881.t1",{"$nulls":15},{"v":0.400911509196047,"d":"0.40"},{"v":0.293698870226611,"d":"0.29"},{"v":2.80478664988092,"d":"2.80"},{"v":0.242372400268327,"d":"0.24"}]
["g54907.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|923633874|ref|XP_013751663.1|",{"$nulls":9},"X"]
["g54925.t1"]
["g50293.t1",{"$nulls":12},"x","x","x",{"v":22.6350027541142,"d":"22.64"},{"v":31.8244840823245,"d":"31.82"},{"v":11.9980295906685,"d":"12.00"},{"v":67.4926648692891,"d":"67.49"}]
["g50310.t1",{"$nulls":8},"sp|P93203|MFP1_SOLLC","MAR-binding filament-like protein 1","gi|339897707|ref|XP_001464299.2|",null,null,"x","x",{"v":6.48230020503924,"d":"6.48"},{"v":2.13835951617272,"d":"2.14"},{"v":2.18615293034409,"d":"2.19"},{"v":0.0669288600659893,"d":"0.07"}]
["g50321.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0207692662116986,"d":"0.02"},{"v":0.0228966072386125,"d":"0.02"},{"v":0,"d":"0.00"}]
["g50345.t1",8152,3824,null,"metabolic process","catalytic activity",null,"ARATHwo_AT5G43280.1","Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination.","sp|O35459|ECH1_MOUSE","Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial","gi|168036235|ref|XP_001770613.1|",null,null,"x","x",{"v":5.3216851913234,"d":"5.32"},{"v":0.270185319047452,"d":"0.27"},{"v":0.070676680167902,"d":"0.07"},{"v":0,"d":"0.00"}]
["g50359.t1","0006790:0016310:0009150","0047627:0016301","0005777:0005886","sulfur compound metabolic process:phosphorylation:purine ribonucleotide metabolic process","adenylylsulfatase activity:kinase activity","peroxisome:plasma membrane","ARATHwo_AT1G31160.1","Encodes a member of the histidine triad nucleotide-binding family of proteins, but its activity has not been determined.","sp|P42855|ZB14_BRAJU","14 kDa zinc-binding protein","gi|302809007|ref|XP_002986197.1|",null,"x","x","x",{"v":296.781791103169,"d":"296.78"},{"v":48.7952390066394,"d":"48.80"},{"v":22.8757418462983,"d":"22.88"},{"v":63.8230874273975,"d":"63.82"}]
["g47107.t1","0006499:0051788:0009853:0006635:0006833:0006623:0009407:0080129:0010388:0009640:0006972:0007030:0043161:0006096:0046686:0009266","0046872:0008237","0005829:0000502:0005634","N-terminal protein myristoylation:response to misfolded protein:photorespiration:fatty acid beta-oxidation:water transport:protein targeting to vacuole:toxin catabolic process:proteasome core complex assembly:cullin deneddylation:photomorphogenesis:hyperosmotic response:Golgi organization:proteasomal ubiquitin-dependent protein catabolic process:glycolysis:response to cadmium ion:response to temperature stimulus","metal ion binding:metallopeptidase activity","cytosol:proteasome complex:nucleus","ARATHwo_AT5G23540.1","Mov34/MPN/PAD-1 family protein; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9LT08|PSDE_ARATH","26S proteasome non-ATPase regulatory subunit 14 homolog","gi|168039238|ref|XP_001772105.1|",null,"x","x","x",{"v":53.8391299034024,"d":"53.84"},{"v":100.649373382071,"d":"100.65"},{"v":57.4407024804363,"d":"57.44"},{"v":55.7281089458604,"d":"55.73"}]
["g47122.t1"]
["g47138.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G20650.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G76370.1); Has 115469 Blast hits to 114023 proteins in 4226 species: Archae - 107; Bacteria - 13502; Metazoa - 42790; Fungi - 9725; Plants - 32710; Viruses - 380; Other Eukaryotes - 16255 (source: NCBI BLink).","sp|Q9SFT7|Y3707_ARATH","Serine/threonine-protein kinase At3g07070","gi|357115011|ref|XP_003559287.1|",{"$nulls":4},{"v":0.00714884074031447,"d":"0.01"},{"v":0,"d":"0.00"},{"v":0.0308193083655176,"d":"0.03"},{"v":0,"d":"0.00"}]
["g47154.t1",{"$nulls":6},"ARATHwo_AT2G18850.1","SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 858 Blast hits to 854 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 205; Plants - 298; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).","sp|A9X1D0|SETD3_PAPAN","Histone-lysine N-methyltransferase setd3","gi|593783459|ref|XP_007154770.1|",null,null,"x","x",{"v":11.3253736113843,"d":"11.33"},{"v":7.94001236962051,"d":"7.94"},{"v":8.02060002534348,"d":"8.02"},{"v":1.25088143466205,"d":"1.25"}]
["g47938.t1"]
["g47956.t1",{"$nulls":10},"gi|571561340|ref|XP_006605040.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.226205638921935,"d":"0.23"},{"v":0,"d":"0.00"}]
["g47973.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|657988534|ref|XP_008386444.1|",null,null,"x","x",{"v":3.23477407635244,"d":"3.23"},{"v":3.37536796779318,"d":"3.38"},{"v":0.417540255548625,"d":"0.42"},{"v":0,"d":"0.00"},null,"X"]
["g47974.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.163709438447689,"d":"0.16"},{"v":0,"d":"0.00"},"X",null,"X"]
["g47992.t1",{"$nulls":15},{"v":0.385909976812695,"d":"0.39"},{"v":2.6491133866539,"d":"2.65"},{"v":1.50696148127738,"d":"1.51"},{"v":0,"d":"0.00"}]
["g48006.t2",8152,"0046872:0004462",null,"metabolic process","metal ion binding:lactoylglutathione lyase activity",null,"ARATHwo_AT1G08110.4","lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).",null,null,"gi|695032005|ref|XP_009403533.1|",null,null,"x","x",{"v":26.7918434576094,"d":"26.79"},{"v":8.579080351046,"d":"8.58"},{"v":10.7119293719204,"d":"10.71"},{"v":6.49187954021192,"d":"6.49"}]
["g76660.t1",{"$nulls":13},"x","x",{"v":8.65583651857888,"d":"8.66"},{"v":6.55127098112182,"d":"6.55"},{"v":42.444975621607,"d":"42.44"},{"v":2.0182049364708,"d":"2.02"}]
["g50711.t1",{"$nulls":20},"X","X"]
["g50727.t1",{"$nulls":13},"x","x",{"v":50.2679079655277,"d":"50.27"},{"v":83.533084817447,"d":"83.53"},{"v":17.4019973655411,"d":"17.40"},{"v":2.7968614357368,"d":"2.80"}]
["g50749.t1",{"$nulls":6},"ARATHwo_AT1G11360.1","Adenine nucleotide alpha hydrolases-like superfamily protein; INVOLVED IN: response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT4G27320.1); Has 1309 Blast hits to 1305 proteins in 243 species: Archae - 8; Bacteria - 416; Metazoa - 122; Fungi - 38; Plants - 720; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).","sp|P87132|YFK5_SCHPO","Uncharacterized protein C167.05","gi|283970980|gb|ADB54816.1|",null,null,"x","x",{"v":0.293226491555753,"d":"0.29"},{"v":2.11738947011352,"d":"2.12"},{"v":0.0927120932311757,"d":"0.09"},{"v":65.9289527728277,"d":"65.93"}]
["g50763.t1"]
["g50780.t1","0044765:0071702",null,16020,"single-organism transport:organic substance transport",null,"membrane","ARATHwo_AT1G07290.1","Encodes a GDP-mannose transporter.","sp|Q84L09|GONS2_ARATH","GDP-mannose transporter GONST2","gi|923811937|ref|XP_013691155.1|",null,null,"x","x",{"v":0.56397017400063,"d":"0.56"},{"v":0.280321721957639,"d":"0.28"},{"v":0.281468841180339,"d":"0.28"},{"v":4.34136819781736,"d":"4.34"}]
["g48024.t1","0012501:0055114:0016042:0046470:0009789:0090333:0046473:0006950","0070290:0005509:0003885:0004630","0009506:0005773:0005886","programmed cell death:oxidation-reduction process:lipid catabolic process:phosphatidylcholine metabolic process:positive regulation of abscisic acid mediated signaling pathway:regulation of stomatal closure:phosphatidic acid metabolic process:response to stress","NAPE-specific phospholipase D activity:calcium ion binding:D-arabinono-1,4-lactone oxidase activity:phospholipase D activity","plasmodesma:vacuole:plasma membrane","ARATHwo_AT4G35790.1","Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.","sp|Q9C5Y0|PLDD1_ARATH","Phospholipase D delta","gi|645273703|ref|XP_008242003.1|",{"$nulls":4},{"v":1.68621514571154,"d":"1.69"},{"v":0.389142791205875,"d":"0.39"},{"v":1.46514907511745,"d":"1.47"},{"v":2.56188148905708,"d":"2.56"}]
["g48040.t1","0090305:0006302:0007126","0004519:0030145:0005515:0004527","0000791:0000795","nucleic acid phosphodiester bond hydrolysis:double-strand break repair:meiosis","endonuclease activity:manganese ion binding:protein binding:exonuclease activity","euchromatin:synaptonemal complex","ARATHwo_AT5G54260.1","DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1","sp|Q7XQR9|MRE11_ORYSJ","Double-strand break repair protein MRE11","gi|573940970|ref|XP_006652883.1|",{"$nulls":4},{"v":0.871581237027034,"d":"0.87"},{"v":1.18976166444058,"d":"1.19"},{"v":1.29695437392858,"d":"1.30"},{"v":1.3391600263535,"d":"1.34"}]
["g48123.t1","0043044:0008152","0004386:0016887:0003677:0005524:0016740:0031491",16589,"ATP-dependent chromatin remodeling:metabolic process","helicase activity:ATPase activity:DNA binding:ATP binding:transferase activity:nucleosome binding","NURF complex","ARATHwo_AT5G18620.2","chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25193 Blast hits to 20371 proteins in 2196 species: Archae - 142; Bacteria - 5974; Metazoa - 6066; Fungi - 4943; Plants - 1903; Viruses - 481; Other Eukaryotes - 5684 (source: NCBI BLink).","sp|F4JY24|CHR17_ARATH","ISWI chromatin-remodeling complex ATPase CHR17","gi|697106058|ref|XP_009606862.1|",null,null,"x","x",{"v":5.58062053747087,"d":"5.58"},{"v":10.3103163370174,"d":"10.31"},{"v":13.1255472547257,"d":"13.13"},{"v":18.7901908735664,"d":"18.79"}]
["g48134.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.389062759545614,"d":"0.39"},{"v":0,"d":"0.00"}]
["g48151.t1",{"$nulls":15},{"v":28.1620985602937,"d":"28.16"},{"v":2.81402261908077,"d":"2.81"},{"v":3.45360639435582,"d":"3.45"},{"v":0.886413811897704,"d":"0.89"}]
["g48167.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|923909832|ref|XP_013724745.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.103469284743482,"d":"0.10"},{"v":0.162866435909619,"d":"0.16"},{"v":0,"d":"0.00"},"X"]
["g48182.t1"]
["g48209.t1",{"$nulls":8},"sp|Q4G0X9|CCD40_HUMAN","Coiled-coil domain-containing protein 40","gi|723001870|dbj|BAP87096.1|",{"$nulls":4},{"v":0.150501475830857,"d":"0.15"},{"v":0.242328237290481,"d":"0.24"},{"v":19.621571783083,"d":"19.62"},{"v":1.00020022906119,"d":"1.00"}]
["g51030.t1"]
["g51047.t1",{"$nulls":13},"x","x",{"v":6.04779567875826,"d":"6.05"},{"v":11.6149009421224,"d":"11.61"},{"v":4.05406415746738,"d":"4.05"},{"v":4.63820929676448,"d":"4.64"}]
["g51064.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|671688033|emb|CDS12578.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.411493667277519,"d":"0.41"},{"v":0.0671504854821033,"d":"0.07"},null,"X"]
["g51081.t1",{"$nulls":8},"sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab"]
["g51097.t1",{"$nulls":10},"gi|861612721|gb|KMQ85528.1|",{"$nulls":4},{"v":0.0367284526469044,"d":"0.04"},{"v":0.770922269019937,"d":"0.77"},{"v":2.97269651216559,"d":"2.97"},{"v":0.71119709399504,"d":"0.71"},"X"]
["g51112.t1",{"$nulls":8},"sp|P37710|ALYS_ENTFA","Autolysin","gi|168034158|ref|XP_001769580.1|",{"$nulls":4},{"v":1.86531439908005,"d":"1.87"},{"v":1.39901097528882,"d":"1.40"},{"v":0.942639828993703,"d":"0.94"},{"v":0,"d":"0.00"}]
["g48216.t1",{"$nulls":6},"ARATHwo_AT2G17240.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24506.1); Has 2795 Blast hits to 943 proteins in 155 species: Archae - 0; Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153; Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).",null,null,"gi|359806834|ref|NP_001241056.1|",null,"x","x","x",{"v":116.283776161676,"d":"116.28"},{"v":74.0800348215724,"d":"74.08"},{"v":34.7805158369524,"d":"34.78"},{"v":37.9048248516782,"d":"37.90"}]
["g48232.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|919054675|ref|XP_013409304.1|",{"$nulls":8},"X"]
["g48249.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|595460921|gb|EXX63433.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.177672668332872,"d":"0.18"},{"v":1.31702912402408,"d":"1.32"},{"v":0,"d":"0.00"},"X"]
["g48266.t1",{"$nulls":15},{"v":5.7310209654991,"d":"5.73"},{"v":24.76056204217,"d":"24.76"},{"v":2.77168461829082,"d":"2.77"},{"v":18.0054807692902,"d":"18.01"}]
["g48280.t1","0006527:0008295",8792,null,"arginine catabolic process:spermidine biosynthetic process","arginine decarboxylase activity",null,"ARATHwo_AT4G34710.1","encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.","sp|A8G243|SPEA_PROM2","Biosynthetic arginine decarboxylase","gi|302753700|ref|XP_002960274.1|",{"$nulls":4},{"v":34.4088141090452,"d":"34.41"},{"v":58.3497309921602,"d":"58.35"},{"v":43.2375180660694,"d":"43.24"},{"v":23.9168048773351,"d":"23.92"}]
["g48386.t1",{"$nulls":6},"ARATHwo_AT3G55140.1","Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G09540.1); Has 1866 Blast hits to 1858 proteins in 295 species: Archae - 2; Bacteria - 979; Metazoa - 0; Fungi - 175; Plants - 677; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).","sp|Q9FM66|PLY21_ARATH","Putative pectate lyase 21","gi|672110263|ref|XP_008794382.1|",null,null,"x","x",{"v":8.34666254638927,"d":"8.35"},{"v":2.39034852263742,"d":"2.39"},{"v":2.01762223599637,"d":"2.02"},{"v":0.680608373811262,"d":"0.68"}]
["g48401.t1",{"$nulls":19},"X",null,"X"]
["g48412.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.154952433339754,"d":"0.15"},{"v":0,"d":"0.00"}]
["g48429.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0401998074222487,"d":"0.04"},{"v":0.0839813364447903,"d":"0.08"},{"v":0,"d":"0.00"}]
["g48447.t1",{"$nulls":6},"ARATHwo_AT4G15020.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|670396018|ref|XP_008678341.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0729982520595266,"d":"0.07"},{"v":0,"d":"0.00"}]
["g48461.t1",{"$nulls":10},"gi|440900799|gb|ELR51853.1|",{"$nulls":4},{"v":0.0194083142921968,"d":"0.02"},{"v":0.250165646154544,"d":"0.25"},{"v":2.54050549413213,"d":"2.54"},{"v":0.667970871149925,"d":"0.67"}]
["g51425.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|294461638|gb|ADE76379.1|",{"$nulls":8},"X"]
["g51442.t1",null,null,16020,null,null,"membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|3810595|gb|AAC69377.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.496773723498663,"d":"0.50"},{"v":0,"d":"0.00"},"X"]
["g51457.t1",{"$nulls":6},"ARATHwo_AT5G66840.1","SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q338N2|C3H62_ORYSJ","Zinc finger CCCH domain-containing protein 62","gi|595819306|ref|XP_007204485.1|",{"$nulls":4},{"v":1.38381667436603,"d":"1.38"},{"v":4.05359364920654,"d":"4.05"},{"v":3.69395937274841,"d":"3.69"},{"v":15.5936744198519,"d":"15.59"}]
["g51464.t1",{"$nulls":8},"sp|O93209|POL_FFV","Pro-Pol polyprotein","gi|698564737|ref|XP_009773064.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0495313761780887,"d":"0.05"},{"v":0.600859641750169,"d":"0.60"},{"v":0,"d":"0.00"},"X"]
["g51493.t1",{"$nulls":15},{"v":0.0919702896592399,"d":"0.09"},{"v":0.102040760874919,"d":"0.10"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g51510.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.17373437468046,"d":"0.17"},{"v":1.18170219659812,"d":"1.18"},{"v":0,"d":"0.00"}]
["g48481.t1"]
["g48495.t1",{"$nulls":8},"sp|O97470|ADT_DICDI","Mitochondrial substrate carrier family protein ancA",{"$nulls":5},{"v":15.0204893955612,"d":"15.02"},{"v":15.33320078555,"d":"15.33"},{"v":7.74243097207652,"d":"7.74"},{"v":7.81091174470162,"d":"7.81"}]
["g48504.t1",{"$nulls":13},"x","x",{"v":18.0700104756198,"d":"18.07"},{"v":17.2158895739728,"d":"17.22"},{"v":7.60501854438823,"d":"7.61"},{"v":4.15946225738122,"d":"4.16"}]
["g48530.t1",{"$nulls":8},"sp|Q7M732|RTL1_MOUSE","Retrotransposon-like protein 1","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.056085135126768,"d":"0.06"},{"v":0.0634000554013863,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g48546.t1","0015693:0055085",15095,16020,"magnesium ion transport:transmembrane transport","magnesium ion transmembrane transporter activity","membrane","ARATHwo_AT1G16010.2","Transmembrane magnesium transporter. One of nine family members.","sp|Q9S9N4|MRS21_ARATH","Magnesium transporter MRS2-1","gi|147777338|emb|CAN71705.1|",{"$nulls":4},{"v":1.99451999222228,"d":"1.99"},{"v":0.38727247657001,"d":"0.39"},{"v":0.175957666863214,"d":"0.18"},{"v":4.77146458805003,"d":"4.77"}]
["g48547.t1",32259,8168,43229,"methylation","methyltransferase activity","intracellular organelle","ARATHwo_AT2G23740.2","nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin modification; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 5 (TAIR:AT2G35160.1).","sp|Q6DGD3|SV91A_DANRE","Histone-lysine N-methyltransferase SUV39H1-A","gi|720084717|ref|XP_010243299.1|",{"$nulls":4},{"v":0.354418963784942,"d":"0.35"},{"v":1.32714621035289,"d":"1.33"},{"v":3.26140864865519,"d":"3.26"},{"v":3.02629114146857,"d":"3.03"}]
["g48563.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.783434482055246,"d":"0.78"},{"v":1.25096088989757,"d":"1.25"},{"v":0.142147821853412,"d":"0.14"},"X"]
["g48581.t1"]
["g51937.t1","0044763:1901576:0016070:0044711:0009416:0009657:0044249",null,"0034357:0009507:0044425","single-organism cellular process:organic substance biosynthetic process:RNA metabolic process:single-organism biosynthetic process:response to light stimulus:plastid organization:cellular biosynthetic process",null,"photosynthetic membrane:chloroplast:membrane part","ARATHwo_AT1G76450.1","Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","sp|Q9S720|PPD3_ARATH","PsbP domain-containing protein 3, chloroplastic","gi|168003549|ref|XP_001754475.1|",null,"x","x","x",{"v":17.981535073756,"d":"17.98"},{"v":16.1741356359571,"d":"16.17"},{"v":6.99405597262706,"d":"6.99"},{"v":2.43007009782672,"d":"2.43"}]
["g51940.t1",{"$nulls":20},"X","X"]
["g51958.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.109295457091769,"d":"0.11"},{"v":1.85778224421698,"d":"1.86"},{"v":2.14414530905933,"d":"2.14"}]
["g51975.t1",{"$nulls":15},{"v":0.218644236972464,"d":"0.22"},{"v":1.51899799866177,"d":"1.52"},{"v":144.268943274394,"d":"144.27"},{"v":7.98614336166941,"d":"7.99"}]
["g51992.t1",{"$nulls":13},"x","x",{"v":0.0598322518667653,"d":"0.06"},{"v":0.487127876654359,"d":"0.49"},{"v":96.7455960241653,"d":"96.75"},{"v":3.3263535656248,"d":"3.33"}]
["g52009.t1"]
["g48620.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":3},"x","x",{"v":0,"d":"0.00"},{"v":0.0982856967392857,"d":"0.10"},{"v":1.90621139520779,"d":"1.91"},{"v":1.63668169821188,"d":"1.64"},"X"]
["g48637.t1",{"$nulls":15},{"v":0.0327474604941737,"d":"0.03"},{"v":0.318598028114209,"d":"0.32"},{"v":1.62003206670447,"d":"1.62"},{"v":0.380797085423466,"d":"0.38"},"X",null,"X"]
["g48653.t1",8610,null,"0043231:0044425:0044444:0012505","lipid biosynthetic process",null,"intracellular membrane-bounded organelle:membrane part:cytoplasmic part:endomembrane system","ARATHwo_AT1G13580.2","Encodes a ceramide synthase that together with LOH1 is essential for production of ceramides containing Very Long Chain Fatty acid VLCFA-Ceramides(mainly C 22 to 26).","sp|Q8W4Y5|ASCL_SOLLC","ASC1-like protein","gi|168008138|ref|XP_001756764.1|",{"$nulls":4},{"v":12.3507727345929,"d":"12.35"},{"v":7.3086443289967,"d":"7.31"},{"v":5.44292319067186,"d":"5.44"},{"v":14.0205324918037,"d":"14.02"}]
["g48770.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.230003632029351,"d":"0.23"},{"v":0,"d":"0.00"},{"v":4.45071993566505,"d":"4.45"}]
["g48788.t1"]
["g48803.t1"]
["g48820.t1"]
["g48833.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P54290|CA2D1_RAT","Voltage-dependent calcium channel subunit alpha-2/delta-1","gi|691783584|emb|CDO78279.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0203309833222607,"d":"0.02"},{"v":0.164205310543249,"d":"0.16"},{"v":0.107476158679029,"d":"0.11"},null,"X"]
["g48846.t1",null,3676,null,null,"nucleic acid binding",null,"ARATHwo_AT2G44980.2","SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 17488 Blast hits to 15031 proteins in 1958 species: Archae - 101; Bacteria - 5047; Metazoa - 3666; Fungi - 3968; Plants - 1607; Viruses - 135; Other Eukaryotes - 2964 (source: NCBI BLink).","sp|F4IV45|CHR10_ARATH","Probable helicase CHR10","gi|193848582|gb|ACF22767.1|"]
["g52327.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.147391196560995,"d":"0.15"},{"v":0,"d":"0.00"}]
["g52337.t1"]
["g52353.t1",{"$nulls":19},"X",null,"X"]
["g52371.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.106662732467258,"d":"0.11"},{"v":0.513374274829264,"d":"0.51"},{"v":0,"d":"0.00"},"X",null,"X"]
["g48861.t1",{"$nulls":10},"gi|629118339|gb|KCW83014.1|",null,null,"x","x",{"v":2.82327491663515,"d":"2.82"},{"v":1.39671991679706,"d":"1.40"},{"v":0.803285739130289,"d":"0.80"},{"v":1.79326098392092,"d":"1.79"}]
["g48868.t1","0010235:0000226:0009825",null,80008,"guard mother cell cytokinesis:microtubule cytoskeleton organization:multidimensional cell growth",null,"Cul4-RING ubiquitin ligase complex","ARATHwo_AT1G49040.1","Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.","sp|Q8RXA7|SCD1_ARATH","DENN domain and WD repeat-containing protein SCD1","gi|763770021|gb|KJB37236.1|",{"$nulls":9},"X"]
["g48893.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":9},"X"]
["g48907.t1",{"$nulls":8},"sp|P39653|DEXT_STRDO","Dextranase",{"$nulls":9},"X"]
["g48925.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|115470825|ref|NP_001059011.1|",{"$nulls":9},"X"]
["g48942.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|602649931|ref|XP_007431365.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.189496136630874,"d":"0.19"},{"v":0.21626517751152,"d":"0.22"},{"v":0.0978768406704347,"d":"0.10"},null,"X"]
["g48958.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|749715597|gb|KII64432.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.133242706885924,"d":"0.13"},{"v":0,"d":"0.00"},"X"]
["g48973.t1"]
["g48993.t1",{"$nulls":19},"X",null,"X"]
["g49008.t1",{"$nulls":6},"ARATHwo_AT3G44590.2","60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|O24415|RLA2B_MAIZE","60S acidic ribosomal protein P2B","gi|695015831|ref|XP_009394805.1|",null,"x","x","x",{"v":723.606538136612,"d":"723.61"},{"v":61.5963844157458,"d":"61.60"},{"v":37.8676181200433,"d":"37.87"},{"v":24.6622530370216,"d":"24.66"}]
["g49025.t1",{"$nulls":10},"gi|731377205|ref|XP_010667809.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.071931510466411,"d":"0.07"},{"v":1.97363295270164,"d":"1.97"},{"v":0,"d":"0.00"},"X"]
["g49042.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.100762480756341,"d":"0.10"},{"v":1.55625955742131,"d":"1.56"},{"v":0.081533913184086,"d":"0.08"}]
["g49059.t1"]
["g49077.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|670387089|ref|XP_008674164.1|",{"$nulls":8},"X"]
["g49176.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.195008057159776,"d":"0.20"},{"v":0,"d":"0.00"},"X",null,"X"]
["g49189.t1","0000413:0006098:0006364:0019288:0010027:0010207:0061077","0003755:0005528","0009570:0016020:0009543","protein peptidyl-prolyl isomerization:pentose-phosphate shunt:rRNA processing:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway:thylakoid membrane organization:photosystem II assembly:chaperone-mediated protein folding","peptidyl-prolyl cis-trans isomerase activity:FK506 binding","chloroplast stroma:membrane:chloroplast thylakoid lumen","ARATHwo_AT2G43560.1","FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 13 (TAIR:AT5G45680.1); Has 8823 Blast hits to 8572 proteins in 1646 species: Archae - 42; Bacteria - 4685; Metazoa - 1489; Fungi - 464; Plants - 749; Viruses - 0; Other Eukaryotes - 1394 (source: NCBI BLink).","sp|O22870|FK163_ARATH","Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic","gi|727449196|ref|XP_010506246.1|",null,"x","x","x",{"v":79.745677452704,"d":"79.75"},{"v":30.7958705457236,"d":"30.80"},{"v":18.5305182701124,"d":"18.53"},{"v":0.786680398871713,"d":"0.79"}]
["g49205.t1",{"$nulls":6},"ARATHwo_AT1G13030.1","sphere organelles protein-related; Has 14464 Blast hits to 9695 proteins in 837 species: Archae - 14; Bacteria - 1320; Metazoa - 4989; Fungi - 1376; Plants - 652; Viruses - 103; Other Eukaryotes - 6010 (source: NCBI BLink).","sp|F1QBY1|NIPLB_DANRE","Nipped-B-like protein B",{"$nulls":5},{"v":6.32238588811897,"d":"6.32"},{"v":2.71874292485694,"d":"2.72"},{"v":1.82703446063023,"d":"1.83"},{"v":2.46907331457691,"d":"2.47"}]
["g49208.t1",70,19237,"0043505:0000776:0005634","mitotic sister chromatid segregation","centromeric DNA binding","centromere-specific nucleosome:kinetochore:nucleus","ARATHwo_AT5G65360.1","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q59LN9|CENPA_CANAL","Histone H3-like centromeric protein CSE4","gi|667835348|ref|XP_007781843.1|"]
["g49238.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.250256332194174,"d":"0.25"},{"v":0.385435261164661,"d":"0.39"},{"v":0.0733900694600013,"d":"0.07"}]
["g49255.t1",{"$nulls":6},"ARATHwo_AT2G17120.1","Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant.","sp|P37531|YAAH_BACSU","Spore germination protein YaaH","gi|168057639|ref|XP_001780821.1|"]
["g53771.t1",null,46872,null,null,"metal ion binding",{"$nulls":5},"gi|836021556|ref|XP_012704490.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.707951851700948,"d":"0.71"},{"v":2.65406304867672,"d":"2.65"},{"v":0.775094193091327,"d":"0.78"},"X"]
["g53788.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0805516318028893,"d":"0.08"},{"v":0.119702775301587,"d":"0.12"},{"v":0,"d":"0.00"},"X"]
["g53794.t1",{"$nulls":8},"sp|P15215|LAMC1_DROME","Laminin subunit gamma-1",{"$nulls":3},"x","x",{"v":0.483657550633091,"d":"0.48"},{"v":1.70445404290594,"d":"1.70"},{"v":1.28989105717712,"d":"1.29"},{"v":0,"d":"0.00"},"X"]
["g53807.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.162140685199837,"d":"0.16"},{"v":1.17499603750547,"d":"1.17"},{"v":0.471909837965372,"d":"0.47"},"X",null,"X"]
["g53824.t1"]
["g53842.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.224688300251664,"d":"0.22"},{"v":0,"d":"0.00"}]
["g49272.t1",{"$nulls":15},{"v":0.0720354694753815,"d":"0.07"},{"v":0,"d":"0.00"},{"v":0.0754236656547897,"d":"0.08"},{"v":0,"d":"0.00"}]
["g49289.t1",{"$nulls":15},{"v":0.467319458910135,"d":"0.47"},{"v":1.45741463727397,"d":"1.46"},{"v":4.06509595838837,"d":"4.07"},{"v":2.62572264315865,"d":"2.63"}]
["g49315.t1",8152,"0043168:0004645",null,"metabolic process","anion binding:phosphorylase activity",null,"ARATHwo_AT3G46970.1","Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.","sp|Q00766|PHS1_DICDI","Glycogen phosphorylase 1","gi|302835559|ref|XP_002949341.1|",null,null,"x","x",{"v":49.403580030784,"d":"49.40"},{"v":131.998217939844,"d":"132.00"},{"v":125.599365252595,"d":"125.60"},{"v":220.836779740445,"d":"220.84"}]
["g49321.t1",{"$nulls":15},{"v":0.0587322264887907,"d":"0.06"},{"v":0.11167285295858,"d":"0.11"},{"v":1.20027176832273,"d":"1.20"},{"v":0,"d":"0.00"},null,"X","X"]
["g49338.t2",{"$nulls":13},"x","x"]
["g49352.t1",{"$nulls":8},"sp|P0C6U3|R1A_CVHN1","Replicase polyprotein 1a",{"$nulls":5},{"v":0.0529324828500444,"d":"0.05"},{"v":0.0504895966493143,"d":"0.05"},{"v":0.643039798699151,"d":"0.64"},{"v":0.200503437130805,"d":"0.20"}]
["g49369.t1",null,16798,null,null,"hydrolase activity, acting on glycosyl bonds",null,"ARATHwo_AT2G20680.1","Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT4G28320.1); Has 827 Blast hits to 815 proteins in 205 species: Archae - 18; Bacteria - 244; Metazoa - 38; Fungi - 187; Plants - 310; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","sp|Q7Y223|MAN2_ARATH","Mannan endo-1,4-beta-mannosidase 2","gi|695035534|ref|XP_009405187.1|",{"$nulls":4},{"v":41.6493297491843,"d":"41.65"},{"v":416.843930978399,"d":"416.84"},{"v":118.464279865204,"d":"118.46"},{"v":1.76627466475776,"d":"1.77"}]
["g77448.t1",{"$nulls":6},"ARATHwo_AT4G10430.1","TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|168028957|ref|XP_001766993.1|",null,null,"x","x",{"v":4.21896323390607,"d":"4.22"},{"v":55.7541203497027,"d":"55.75"},{"v":16.6371503382692,"d":"16.64"},{"v":67.1735437688278,"d":"67.17"}]
["g54166.t1",{"$nulls":6},"ARATHwo_AT3G26770.1","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26760.1); Has 124722 Blast hits to 124477 proteins in 3643 species: Archae - 1005; Bacteria - 80894; Metazoa - 6366; Fungi - 6864; Plants - 2737; Viruses - 9; Other Eukaryotes - 26847 (source: NCBI BLink).","sp|Q9RPT1|RHLG_PSEAE","Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase","gi|921299921|ref|WP_053235133.1|",null,"x","x","x",{"v":3095.94014931378,"d":"3095.94"},{"v":54.7859438322457,"d":"54.79"},{"v":51.0152682638343,"d":"51.02"},{"v":0.462669318440763,"d":"0.46"}]
["g54182.t1",{"$nulls":15},{"v":0.637452868387464,"d":"0.64"},{"v":0.192571860903224,"d":"0.19"},{"v":0.744329025370051,"d":"0.74"},{"v":0,"d":"0.00"}]
["g54200.t1","0000209:0000278:0009880:0050826:0048575:0048825:0051301:0010564:0006511:0019915:0010182:0006396:0009845:0010100:0045595:0009738:0009909:0007062:0010072:0006281:0010162","0016874:0031625","0080008:0005829:0005634","protein polyubiquitination:mitotic cell cycle:embryonic pattern specification:response to freezing:short-day photoperiodism, flowering:cotyledon development:cell division:regulation of cell cycle process:ubiquitin-dependent protein catabolic process:lipid storage:sugar mediated signaling pathway:RNA processing:seed germination:negative regulation of photomorphogenesis:regulation of cell differentiation:abscisic acid mediated signaling pathway:regulation of flower development:sister chromatid cohesion:primary shoot apical meristem specification:DNA repair:seed dormancy process","ligase activity:ubiquitin protein ligase binding","Cul4-RING ubiquitin ligase complex:cytosol:nucleus","ARATHwo_AT5G46210.1","Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.","sp|Q8LGH4|CUL4_ARATH","Cullin-4","gi|168047754|ref|XP_001776334.1|",null,null,"x","x",{"v":20.6553006191693,"d":"20.66"},{"v":22.852678980875,"d":"22.85"},{"v":21.1881992967642,"d":"21.19"},{"v":43.0475743171029,"d":"43.05"}]
["g54217.t1"]
["g54231.t1",{"$nulls":19},"X",null,"X"]
["g49404.t1",6418,"0000166:0004812",null,"tRNA aminoacylation for protein translation","nucleotide binding:aminoacyl-tRNA ligase activity",null,"ARATHwo_AT1G29880.1","glycyl-tRNA synthetase / glycine--tRNA ligase; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: response to cadmium ion, glycyl-tRNA aminoacylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), S15/NS1, RNA-binding (InterPro:IPR009068), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), Anticodon-binding (InterPro:IPR004154), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT1G29870.1); Has 6392 Blast hits to 4464 proteins in 1181 species: Archae - 269; Bacteria - 3324; Metazoa - 242; Fungi - 171; Plants - 75; Viruses - 0; Other Eukaryotes - 2311 (source: NCBI BLink).","sp|O23627|SYGM1_ARATH","Glycine--tRNA ligase, mitochondrial 1","gi|224285368|gb|ACN40407.1|",{"$nulls":4},{"v":4.24212617687395,"d":"4.24"},{"v":1.86597852164062,"d":"1.87"},{"v":0.784562190773424,"d":"0.78"},{"v":3.25104767144176,"d":"3.25"}]
["g77481.t1",{"$nulls":12},"x","x","x",{"v":547.331268535531,"d":"547.33"},{"v":49.9114549944437,"d":"49.91"},{"v":20.6417501658203,"d":"20.64"},{"v":0,"d":"0.00"}]
["g49436.t1",{"$nulls":20},"X","X"]
["g49517.t1",8152,16757,null,"metabolic process","transferase activity, transferring glycosyl groups",{"$nulls":5},"gi|685351804|ref|XP_009111303.1|",null,"x","x","x",{"v":0.921649807579618,"d":"0.92"},{"v":1.32679186531282,"d":"1.33"},{"v":0,"d":"0.00"},{"v":7.89653296358164,"d":"7.90"}]
["g49537.t1","0071704:0044238:0044699:0044237",16740,null,"organic substance metabolic process:primary metabolic process:single-organism process:cellular metabolic process","transferase activity",{"$nulls":5},"gi|3915037|sp|O24301.1|SUS2_PEA",{"$nulls":4},{"v":0.464349024322906,"d":"0.46"},{"v":1.4512173774936,"d":"1.45"},{"v":0.116258726132557,"d":"0.12"},{"v":0,"d":"0.00"}]
["g49552.t1",{"$nulls":8},"sp|P0CT43|TF28_SCHPO","Transposon Tf2-8 polyprotein","gi|514697459|ref|XP_004996299.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.187780523227784,"d":"0.19"},{"v":0.103395842210339,"d":"0.10"},"X"]
["g49567.t1",{"$nulls":6},"ARATHwo_AT2G26770.1","Encodes a plant-specific actin binding protein SCAB1 (STOMATAL CLOSURE-RELATED ACTIN BINDING PROTEIN1). SCAB1 stabilizes actin filaments and regulates stomatal movement.","sp|O48791|SCAB1_ARATH","Stomatal closure-related actin-binding protein 1","gi|747085441|ref|XP_011090182.1|",null,null,"x","x",{"v":3.75794079077711,"d":"3.76"},{"v":3.02120939229195,"d":"3.02"},{"v":6.72817634686344,"d":"6.73"},{"v":0.196919784709736,"d":"0.20"}]
["g49581.t1",8152,16837,null,"metabolic process","carbon-oxygen lyase activity, acting on polysaccharides",{"$nulls":3},"sp|P36685|LPPB_HISSO","Outer membrane antigenic lipoprotein B","gi|567757317|dbj|BAO23825.1|",null,null,"x","x",{"v":6.25601905462612,"d":"6.26"},{"v":12.9132221716171,"d":"12.91"},{"v":20.2672987343386,"d":"20.27"},{"v":2.13149612561342,"d":"2.13"}]
["g54940.t1",{"$nulls":15},{"v":0.0421560388655043,"d":"0.04"},{"v":0.312335205341362,"d":"0.31"},{"v":0,"d":"0.00"},{"v":0.566550358312507,"d":"0.57"}]
["g54963.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|586720326|ref|XP_006848698.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.179542166867561,"d":"0.18"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X"]
["g54976.t1",{"$nulls":10},"gi|727544481|ref|XP_010445492.1|",{"$nulls":4},{"v":0.175462224857698,"d":"0.18"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.095430875009628,"d":"0.10"}]
["g54993.t1",{"$nulls":15},{"v":2.36877576762756,"d":"2.37"},{"v":1.16564165883388,"d":"1.17"},{"v":0.555148911338187,"d":"0.56"},{"v":0.149478840837491,"d":"0.15"},null,"X","X"]
["g55009.t2",{"$nulls":10},"gi|168039855|ref|XP_001772412.1|",{"$nulls":4},{"v":26.1840781456289,"d":"26.18"},{"v":4.14168481064073,"d":"4.14"},{"v":8.93223390174261,"d":"8.93"},{"v":3.39822390830498,"d":"3.40"}]
["g49600.t1",{"$nulls":12},"x","x","x",{"v":2.04482576736441,"d":"2.04"},{"v":0.367905600355302,"d":"0.37"},{"v":0.191129217183875,"d":"0.19"},{"v":0.129372688776789,"d":"0.13"}]
["g49617.t1",{"$nulls":6},"ARATHwo_AT3G13010.1","hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 542 Blast hits to 530 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 539; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","sp|Q5BEN5|STU1_EMENI","Protein stu1","gi|902169579|gb|KNA07679.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0500151030850797,"d":"0.05"},{"v":0,"d":"0.00"}]
["g49627.t1",{"$nulls":6},"ARATHwo_AT4G24840.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q14746|COG2_HUMAN","Conserved oligomeric Golgi complex subunit 2","gi|255540279|ref|XP_002511204.1|",null,null,"x","x",{"v":6.97817334806731,"d":"6.98"},{"v":6.85222792778225,"d":"6.85"},{"v":4.17152343419558,"d":"4.17"},{"v":2.57988230826141,"d":"2.58"}]
["g49650.t1",{"$nulls":10},"gi|302820410|ref|XP_002991872.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.044682861983746,"d":"0.04"},{"v":0,"d":"0.00"}]
["g49668.t1",{"$nulls":6},"ARATHwo_AT3G04710.1","Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.","sp|Q5F478|ANR44_CHICK","Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B","gi|123452981|ref|XP_001314547.1|",{"$nulls":4},{"v":1.97371887049293,"d":"1.97"},{"v":0.808178874237778,"d":"0.81"},{"v":1.00069346978294,"d":"1.00"},{"v":1.80059243056715,"d":"1.80"}]
["g49682.t1",{"$nulls":6},"ARATHwo_AT3G52250.1","Encodes a protein with a putative role in mRNA splicing.","sp|Q4KKX4|NCOR1_XENTR","Nuclear receptor corepressor 1","gi|168021939|ref|XP_001763498.1|",null,null,"x","x",{"v":0.735541896582148,"d":"0.74"},{"v":5.60354517191894,"d":"5.60"},{"v":10.1782695189272,"d":"10.18"},{"v":3.96678894807171,"d":"3.97"}]
["g49697.t1"]
["g49709.t1",{"$nulls":6},"ARATHwo_AT1G50730.1","unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).","sp|Q557H3|U505_DICDI","UPF0505 protein","gi|168064818|ref|XP_001784355.1|",null,null,"x","x",{"v":0.870127793839961,"d":"0.87"},{"v":2.2744757119411,"d":"2.27"},{"v":1.52144386448092,"d":"1.52"},{"v":0.325304039517815,"d":"0.33"}]
["g49730.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.148402977677587,"d":"0.15"},{"v":1.11165173756026,"d":"1.11"},{"v":0.281566188637371,"d":"0.28"}]
["g49747.t1"]
["g66649.t1",{"$nulls":19},"X",null,"X"]
["g66665.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727591423|ref|XP_010468773.1|",{"$nulls":4},{"v":3.51826814784304,"d":"3.52"},{"v":4.30191116391933,"d":"4.30"},{"v":11.447597423726,"d":"11.45"},{"v":10.830982096378,"d":"10.83"},null,"X"]
["g66680.t1",{"$nulls":10},"gi|923839889|ref|XP_013700562.1|",{"$nulls":4},{"v":0.0676372969030836,"d":"0.07"},{"v":0,"d":"0.00"},{"v":1.38003767937447,"d":"1.38"},{"v":0.127760733711,"d":"0.13"},"X"]
["g66696.t1",{"$nulls":6},"ARATHwo_AT4G37130.1","hydroxyproline-rich glycoprotein family protein; Has 29299 Blast hits to 11722 proteins in 694 species: Archae - 13; Bacteria - 1010; Metazoa - 7996; Fungi - 3634; Plants - 2592; Viruses - 347; Other Eukaryotes - 13707 (source: NCBI BLink).","sp|Q8RWH9|NUP58_ARATH","Nuclear pore complex protein NUP58",null,null,"x","x","x"]
["g66712.t1",{"$nulls":15},{"v":0.0859079603981198,"d":"0.09"},{"v":0.961061654127378,"d":"0.96"},{"v":3.06519419174767,"d":"3.07"},{"v":0.742431285346953,"d":"0.74"},"X",null,"X"]
["g66713.t1",null,5488,16020,null,"binding","membrane",null,null,"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":0.0859671266166296,"d":"0.09"},{"v":0.148587721443247,"d":"0.15"},{"v":0.688325616739954,"d":"0.69"},{"v":0.708845017916436,"d":"0.71"},"X"]
["g66730.t1",{"$nulls":15},{"v":5.49635717056029,"d":"5.50"},{"v":4.19297697257381,"d":"4.19"},{"v":8.02478564930994,"d":"8.02"},{"v":11.3675290245385,"d":"11.37"},null,"X","X"]
["g66749.t1",{"$nulls":15},{"v":0.0449803060408533,"d":"0.04"},{"v":0.393448073810405,"d":"0.39"},{"v":1.26445319399449,"d":"1.26"},{"v":0.54710882376283,"d":"0.55"}]
["g55391.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923749700|ref|XP_013673944.1|",{"$nulls":4},{"v":2.75089962455929,"d":"2.75"},{"v":3.06621578733137,"d":"3.07"},{"v":3.02139511817832,"d":"3.02"},{"v":1.19545409526566,"d":"1.20"},null,"X"]
["g55408.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|390366728|ref|XP_003731101.1|",{"$nulls":8},"X"]
["g55426.t1"]
["g55443.t1",{"$nulls":15},{"v":0.115706597955087,"d":"0.12"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g55461.t1"]
["g55479.t1",{"$nulls":10},"gi|546301773|ref|XP_005711507.1|",{"$nulls":4},{"v":0.322325005193055,"d":"0.32"},{"v":3.5133401401812,"d":"3.51"},{"v":15.7134401944757,"d":"15.71"},{"v":5.89998377141472,"d":"5.90"},null,"X"]
["g49763.t1",null,16787,null,null,"hydrolase activity",null,"ARATHwo_AT3G47050.1","Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47010.1); Has 10572 Blast hits to 9756 proteins in 1589 species: Archae - 69; Bacteria - 6515; Metazoa - 14; Fungi - 1565; Plants - 482; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink).","sp|P40406|NAGZ_BACSU","Beta-hexosaminidase","gi|506343952|ref|WP_015863671.1|",null,null,"x","x",{"v":8.30301955277209,"d":"8.30"},{"v":14.7172393942384,"d":"14.72"},{"v":13.6849736646927,"d":"13.68"},{"v":2.63340785380208,"d":"2.63"}]
["g49780.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0356027049531123,"d":"0.04"},{"v":0.114625429369621,"d":"0.11"},{"v":0.0592059033811883,"d":"0.06"},null,"X"]
["g50036.t1",{"$nulls":8},"sp|P86265|HS74L_MESAU","Heat shock 70 kDa protein 4L","gi|818600975|gb|KKS50156.1|"]
["g50051.t1",{"$nulls":10},"gi|270016625|gb|EFA13071.1|",{"$nulls":4},{"v":0.0626359379459413,"d":"0.06"},{"v":0.531724123270838,"d":"0.53"},{"v":4.07495546010428,"d":"4.07"},{"v":0.498878071909835,"d":"0.50"},null,"X"]
["g50078.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.108332068331393,"d":"0.11"},{"v":0,"d":"0.00"}]
["g50085.t1",null,"0016301:1901363:0097159",null,null,"kinase activity:heterocyclic compound binding:organic cyclic compound binding",null,"ARATHwo_AT3G02810.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G16500.1); Has 153092 Blast hits to 133237 proteins in 4793 species: Archae - 164; Bacteria - 24814; Metazoa - 52285; Fungi - 12626; Plants - 34968; Viruses - 826; Other Eukaryotes - 27409 (source: NCBI BLink).","sp|Q8L4H4|NORK_MEDTR","Nodulation receptor kinase","gi|658059740|ref|XP_008365700.1|",null,null,"x","x",{"v":1.09710987252917,"d":"1.10"},{"v":2.06903057105224,"d":"2.07"},{"v":1.01653125450901,"d":"1.02"},{"v":2.99271367159341,"d":"2.99"}]
["g50102.t1",{"$nulls":8},"sp|Q4U0X6|POL_HTL3P","Gag-Pro-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0364766511225753,"d":"0.04"},{"v":0,"d":"0.00"},"X"]
["g50120.t1",{"$nulls":15},{"v":0.0192564983847511,"d":"0.02"},{"v":0.0259554279249415,"d":"0.03"},{"v":0.0457070629564358,"d":"0.05"},{"v":0,"d":"0.00"}]
["g50136.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT3G20200.1","Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT1G16760.1); Has 113274 Blast hits to 111719 proteins in 4667 species: Archae - 115; Bacteria - 13449; Metazoa - 41561; Fungi - 9228; Plants - 32231; Viruses - 306; Other Eukaryotes - 16384 (source: NCBI BLink).","sp|Q8GUH1|PUB33_ARATH","U-box domain-containing protein 33","gi|571465222|ref|XP_006583291.1|",null,null,"x","x",{"v":5.35526225988807,"d":"5.36"},{"v":13.5079517329239,"d":"13.51"},{"v":4.80914045622228,"d":"4.81"},{"v":0.268924419275911,"d":"0.27"}]
["g50149.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.118997454349851,"d":"0.12"},{"v":0,"d":"0.00"},"X",null,"X"]
["g50172.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.129900647497256,"d":"0.13"},{"v":0.0601984307712133,"d":"0.06"},{"v":0,"d":"0.00"}]
["g50189.t1",{"$nulls":8},"sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.218946250204423,"d":"0.22"},{"v":0,"d":"0.00"},"X"]
["g50205.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q7TN75|PEG10_MOUSE","Retrotransposon-derived protein PEG10","gi|727650546|ref|XP_010495970.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.226698581952629,"d":"0.23"},{"v":0.482646878480356,"d":"0.48"},{"v":0.126489356124066,"d":"0.13"},"X"]
["g50219.t1",{"$nulls":12},"x","x","x",{"v":44.5756623070863,"d":"44.58"},{"v":45.8071395660107,"d":"45.81"},{"v":57649.449015721,"d":"57649.45"},{"v":31.1219867427642,"d":"31.12"}]
["g50235.t1",{"$nulls":8},"sp|P9WJ79|MFTC_MYCTU","Putative mycofactocin radical SAM maturase MftC","gi|693500678|emb|CEF97051.1|",{"$nulls":4},{"v":0.397366238257853,"d":"0.40"},{"v":2.83060283699619,"d":"2.83"},{"v":1.1901195892078,"d":"1.19"},{"v":0.505000598928022,"d":"0.51"}]
["g57035.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.078968968611859,"d":"0.08"},{"v":0.765940215026748,"d":"0.77"},{"v":0,"d":"0.00"}]
["g57052.t1",{"$nulls":10},"gi|795360510|ref|XP_011933243.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.440392613113735,"d":"0.44"},{"v":0,"d":"0.00"}]
["g57067.t3",44699,null,null,"single-organism process",null,null,"ARATHwo_AT4G13240.1","Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.","sp|Q9SVQ3|ROGF9_ARATH","Rop guanine nucleotide exchange factor 9","gi|641446136|dbj|BAO94214.1|",null,null,"x","x",{"v":1.5866706631789,"d":"1.59"},{"v":12.5359544546654,"d":"12.54"},{"v":31.3238539808198,"d":"31.32"},{"v":0.491261065333512,"d":"0.49"}]
["g57084.t1",{"$nulls":8},"sp|P31795|POL_MLVRK","Pol polyprotein","gi|823127596|ref|XP_012437514.1|",{"$nulls":4},{"v":0.0440853002498022,"d":"0.04"},{"v":0.796657830664775,"d":"0.80"},{"v":2.44093847582247,"d":"2.44"},{"v":0.601515948975923,"d":"0.60"},"X"]
["g50239.t1",{"$nulls":10},"gi|902228115|gb|KNA20974.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0813740734627027,"d":"0.08"},{"v":0.542769728838887,"d":"0.54"},{"v":0,"d":"0.00"},"X"]
["g50260.t1",{"$nulls":6},"ARATHwo_AT1G05090.1","dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1); Has 3598 Blast hits to 1413 proteins in 251 species: Archae - 2; Bacteria - 2631; Metazoa - 338; Fungi - 185; Plants - 102; Viruses - 1; Other Eukaryotes - 339 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":3.12998811768029,"d":"3.13"},{"v":7.8555093368265,"d":"7.86"},{"v":11.5074314428699,"d":"11.51"},{"v":13.2065886729635,"d":"13.21"}]
["g50276.t1",{"$nulls":10},"gi|548849001|gb|ERN07906.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.124082798055069,"d":"0.12"},{"v":0,"d":"0.00"}]
["g50380.t1",5975,"0004614:0000287",null,"carbohydrate metabolic process","phosphoglucomutase activity:magnesium ion binding",null,"ARATHwo_AT1G70730.3","Encodes a cytosolic phosphoglucomutase (PGM). Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development.","sp|P93805|PGMC2_MAIZE","Phosphoglucomutase, cytoplasmic 2","gi|848892038|ref|XP_012846112.1|",{"$nulls":4},{"v":29.361566590031,"d":"29.36"},{"v":49.8513570780942,"d":"49.85"},{"v":11.3025329736463,"d":"11.30"},{"v":66.4825024003868,"d":"66.48"}]
["g77953.t1","0055085:0006422","0050560:0003676:0005524:0004815:0005215","0016021:0005737","transmembrane transport:aspartyl-tRNA aminoacylation","aspartate-tRNA(Asn) ligase activity:nucleic acid binding:ATP binding:aspartate-tRNA ligase activity:transporter activity","integral to membrane:cytoplasm","ARATHwo_AT4G33760.1","tRNA synthetase class II (D, K and N) family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type (InterPro:IPR004524), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type, C-terminal (InterPro:IPR018153), GAD domain (InterPro:IPR004115); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink).","sp|C5CWX8|SYDND_VARPS","Aspartate--tRNA(Asp/Asn) ligase","gi|495112315|ref|WP_007837135.1|",{"$nulls":4},{"v":0.0192453471888576,"d":"0.02"},{"v":0.0936427198526803,"d":"0.09"},{"v":0.213727425726577,"d":"0.21"},{"v":0.909192191378982,"d":"0.91"},"X",null,null,"g77953"]
["g50410.t1",{"$nulls":15},{"v":0.0823937326172098,"d":"0.08"},{"v":0,"d":"0.00"},{"v":0.27844015431127,"d":"0.28"},{"v":0,"d":"0.00"},"X",null,"X"]
["g50426.t1",{"$nulls":6},"ARATHwo_AT1G23180.1","ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1); Has 2470 Blast hits to 1640 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 372; Plants - 1309; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).","sp|Q8GUG9|PUB11_ARATH","U-box domain-containing protein 11","gi|596295698|ref|XP_007227048.1|",null,null,"x","x",{"v":3.94713215638867,"d":"3.95"},{"v":3.71122007117138,"d":"3.71"},{"v":4.48237426309678,"d":"4.48"},{"v":1.96356738364731,"d":"1.96"}]
["g57834.t1",null,null,"0043226:0044424",null,null,"organelle:intracellular part",null,null,"sp|Q9SMH3|DYH1A_CHLRE","Dynein-1-alpha heavy chain, flagellar inner arm I1 complex","gi|302843856|ref|XP_002953469.1|"]
["g57851.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",null,null,"gi|116789822|gb|ABK25400.1|","x"]
["g57864.t1",{"$nulls":10},"gi|637273887|ref|XP_008103836.1|",{"$nulls":4},{"v":0.0267184872994156,"d":"0.03"},{"v":0,"d":"0.00"},{"v":2.9403563627887,"d":"2.94"},{"v":0,"d":"0.00"},null,"X"]
["g57881.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.300661706884713,"d":"0.30"},{"v":0,"d":"0.00"}]
["g57891.t1",{"$nulls":6},"ARATHwo_AT5G56730.1","Insulinase (Peptidase family M16) protein; FUNCTIONS IN: metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16) family protein (TAIR:AT5G42390.1); Has 9157 Blast hits to 9081 proteins in 2135 species: Archae - 18; Bacteria - 6669; Metazoa - 661; Fungi - 329; Plants - 276; Viruses - 3; Other Eukaryotes - 1201 (source: NCBI BLink).","sp|Q8K259|GIN1_MOUSE","Gypsy retrotransposon integrase-like protein 1","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.390143461317699,"d":"0.39"},{"v":0,"d":"0.00"},null,"X"]
["g50452.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g50468.t1",{"$nulls":6},"ARATHwo_AT1G14550.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G14540.1); Has 4724 Blast hits to 4696 proteins in 306 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 328; Plants - 4308; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).","sp|Q02200|PERX_NICSY","Lignin-forming anionic peroxidase","gi|721616670|ref|XP_010227808.1|",null,null,"x","x",{"v":0.541957985440875,"d":"0.54"},{"v":11.1509676081014,"d":"11.15"},{"v":0.0781049121561507,"d":"0.08"},{"v":0,"d":"0.00"}]
["g50555.t1",{"$nulls":8},"sp|Q18DN4|HMU_HALWD","Halomucin"]
["g50572.t1","0016226:0010207:0009735:0009073",null,"0009571:0009535:0009570","iron-sulfur cluster assembly:photosystem II assembly:response to cytokinin stimulus:aromatic amino acid family biosynthetic process",null,"proplastid stroma:chloroplast thylakoid membrane:chloroplast stroma","ARATHwo_AT1G73060.1","Low PSII Accumulation 3 (LPA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1995) (TAIR:AT5G48790.1); Has 97 Blast hits to 97 proteins in 32 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","sp|Q8H0W0|LPA3_ARATH","Protein LOW PSII ACCUMULATION 3, chloroplastic","gi|658045321|ref|XP_008358335.1|",{"$nulls":9},"X"]
["g50584.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0.0326405995220034,"d":"0.03"},{"v":0.772019663955331,"d":"0.77"},{"v":2.23008485045174,"d":"2.23"},{"v":0.299823619906197,"d":"0.30"},"X"]
["g50590.t1",{"$nulls":10},"gi|675204999|ref|XP_008911384.1|",{"$nulls":4},{"v":1.76847242716493,"d":"1.77"},{"v":88.1210157973271,"d":"88.12"},{"v":1.26845258760046,"d":"1.27"},{"v":351.227069039741,"d":"351.23"}]
["g50607.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|727568580|ref|XP_010456761.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0990905323765137,"d":"0.10"},{"v":0,"d":"0.00"},"X"]
["g50624.t1",15031,null,null,"protein transport",null,null,"ARATHwo_AT3G05710.2","Encodes a member of SYP4 Gene Family that is a plant ortholog of the Tlg2/syntaxin16 Qa-SNARE. Together with SYP42, it regulates the secretory and vacuolar transport pathways in the post-Golgi network and maintains the morphology of the Golgi apparatus and TGN and is required for extracellular resistance responses to a fungal pathogen.","sp|Q9SUJ1|SYP43_ARATH","Syntaxin-43","gi|721751168|gb|AIX10970.1|",{"$nulls":4},{"v":0.330191163241724,"d":"0.33"},{"v":0.512637061588276,"d":"0.51"},{"v":0.607531625388927,"d":"0.61"},{"v":1.85257899216944,"d":"1.85"}]
["g50641.t1"]
["g58811.t1",{"$nulls":13},"x","x",{"v":3.44496054847944,"d":"3.44"},{"v":3.75248050183745,"d":"3.75"},{"v":2.46092084538194,"d":"2.46"},{"v":4.74820593467443,"d":"4.75"}]
["g58817.t1",{"$nulls":8},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0447423954449987,"d":"0.04"},{"v":0.576385127370467,"d":"0.58"},{"v":0.35017623620283,"d":"0.35"},"X"]
["g50644.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|",{"$nulls":8},"X"]
["g50661.t1",{"$nulls":10},"gi|302809745|ref|XP_002986565.1|",{"$nulls":4},{"v":0.0843310650705319,"d":"0.08"},{"v":0.0447121469551661,"d":"0.04"},{"v":0.686157856032569,"d":"0.69"},{"v":0.040162139078351,"d":"0.04"}]
["g50676.t1"]
["g50689.t1"]
["g50807.t1",19538,5524,null,"protein metabolic process","ATP binding",null,"ARATHwo_AT5G50920.1","Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. Association of Hsp93 with the inner envelope membrane through its N domain is important for the functions of Hsp93 in vivo.","sp|Q7F9I1|CLPC1_ORYSJ","Chaperone protein ClpC1, chloroplastic","gi|302790788|ref|XP_002977161.1|",null,null,"x","x",{"v":14.6807015577613,"d":"14.68"},{"v":6.33621082368513,"d":"6.34"},{"v":10.4256439747512,"d":"10.43"},{"v":4.26249403998003,"d":"4.26"}]
["g50823.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q8BR93|HARB1_MOUSE","Putative nuclease HARBI1","gi|340382901|ref|XP_003389956.1|",{"$nulls":8},"X"]
["g50841.t1",{"$nulls":13},"x","x",{"v":0.0987114494429078,"d":"0.10"},{"v":0.186991127868391,"d":"0.19"},{"v":0,"d":"0.00"},{"v":13.8994564668498,"d":"13.90"}]
["g50853.t2",51603,4298,"0005737:0005839:0005634","proteolysis involved in cellular protein catabolic process","threonine-type endopeptidase activity","cytoplasm:proteasome core complex:nucleus","ARATHwo_AT5G40580.1","Encodes 20S proteasome beta subunit PBB2 (PBB2).","sp|Q7DLS1|PSB7B_ARATH","Proteasome subunit beta type-7-B","gi|168019333|ref|XP_001762199.1|",{"$nulls":4},{"v":47.3828245029007,"d":"47.38"},{"v":38.2388791033051,"d":"38.24"},{"v":18.4805768435231,"d":"18.48"},{"v":22.7644800905708,"d":"22.76"}]
["g78174.t1",{"$nulls":13},"x","x",{"v":0,"d":"0.00"},{"v":0.286553395013056,"d":"0.29"},{"v":0.499549144774017,"d":"0.50"},{"v":0,"d":"0.00"}]
["g60010.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.629864923038993,"d":"0.63"},{"v":0,"d":"0.00"}]
["g60027.t1"]
["g60044.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|154297481|ref|XP_001549167.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0577393114996907,"d":"0.06"},{"v":0.4697347800065,"d":"0.47"},{"v":0,"d":"0.00"},null,"X"]
["g60062.t1",{"$nulls":8},"sp|P27401|POL_SFV3L","Pro-Pol polyprotein","gi|695574171|ref|XP_009551764.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0285964130211277,"d":"0.03"},{"v":0.119524682837637,"d":"0.12"},{"v":0,"d":"0.00"},"X"]
["g50882.t2",{"$nulls":13},"x","x",{"v":0.327385488524904,"d":"0.33"},{"v":1.75734386164793,"d":"1.76"},{"v":37.5067431143622,"d":"37.51"},{"v":5.9402110791602,"d":"5.94"}]
["g50908.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.357875730972553,"d":"0.36"},{"v":0,"d":"0.00"},null,"X","X"]
["g50917.t1",{"$nulls":6},"ARATHwo_AT1G52360.2","Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3).","sp|Q9C827|COB22_ARATH","Coatomer subunit beta'-2","gi|67483006|ref|XP_656797.1|",{"$nulls":4},{"v":3.59401944264044,"d":"3.59"},{"v":9.73067694441205,"d":"9.73"},{"v":7.23386537929183,"d":"7.23"},{"v":0.300381786586667,"d":"0.30"}]
["g50933.t1",{"$nulls":8},"sp|Q6PDS3|SARM1_MOUSE","Sterile alpha and TIR motif-containing protein 1","gi|168019712|ref|XP_001762388.1|",{"$nulls":4},{"v":2.86725759477438,"d":"2.87"},{"v":5.42321040572831,"d":"5.42"},{"v":4.69017241501508,"d":"4.69"},{"v":7.80648658225248,"d":"7.81"}]
["g50949.t1",{"$nulls":19},"X",null,"X"]
["g50965.t1",{"$nulls":19},"X",null,"X"]
["g50975.t1",null,"0004386:0003676",null,null,"helicase activity:nucleic acid binding",null,"ARATHwo_AT5G08110.1","nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), Ubiquitin supergroup (InterPro:IPR019955), Protein of unknown function DUF1998 (InterPro:IPR018973), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 14986 Blast hits to 14312 proteins in 2354 species: Archae - 833; Bacteria - 9982; Metazoa - 976; Fungi - 914; Plants - 633; Viruses - 5; Other Eukaryotes - 1643 (source: NCBI BLink).","sp|O13983|HRQ1_SCHPO","ATP-dependent helicase hrq1","gi|168007651|ref|XP_001756521.1|",null,null,"x","x",{"v":0.295829391531544,"d":"0.30"},{"v":0.993601022123599,"d":"0.99"},{"v":1.02326123490713,"d":"1.02"},{"v":1.94750066952986,"d":"1.95"}]
["g61468.t1",8152,16301,null,"metabolic process","kinase activity",{"$nulls":5},"gi|901807163|gb|KMZ64278.1|",{"$nulls":4},{"v":13.9629078029029,"d":"13.96"},{"v":11.4667199237056,"d":"11.47"},{"v":9.84378301517462,"d":"9.84"},{"v":9.48403506087332,"d":"9.48"}]
["g61484.t1",{"$nulls":15},{"v":0.219919868666815,"d":"0.22"},{"v":0.0961954900968783,"d":"0.10"},{"v":0.095262463869587,"d":"0.10"},{"v":0,"d":"0.00"}]
["g61502.t1",{"$nulls":15},{"v":0.188408940401744,"d":"0.19"},{"v":0.433259549964215,"d":"0.43"},{"v":1.41265531059776,"d":"1.41"},{"v":0.838447537151833,"d":"0.84"},"X",null,"X"]
["g61519.t1",{"$nulls":6},"ARATHwo_AT3G29170.1","Eukaryotic protein of unknown function (DUF872); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414, transmembrane (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF872) (TAIR:AT2G19350.1); Has 245 Blast hits to 245 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","sp|Q8CIB6|TM230_MOUSE","Transmembrane protein 230","gi|659118865|ref|XP_008459349.1|",null,null,"x","x",{"v":6.8569685972563,"d":"6.86"},{"v":4.44167425436927,"d":"4.44"},{"v":5.16017474751409,"d":"5.16"},{"v":11.9512491511759,"d":"11.95"}]
["g50994.t1",{"$nulls":8},"sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a",{"$nulls":5},{"v":0.86213513862891,"d":"0.86"},{"v":3.46595297834284,"d":"3.47"},{"v":10.2131197240982,"d":"10.21"},{"v":7.81012656277312,"d":"7.81"},"X"]
["g51018.t1",{"$nulls":6},"ARATHwo_AT4G15020.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","sp|Q12019|MDN1_YEAST","Midasin","gi|923597104|ref|XP_013739946.1|"]
["g51131.t1",{"$nulls":15},{"v":0.114628395098135,"d":"0.11"},{"v":0.140486340704261,"d":"0.14"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g51213.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|390339193|ref|XP_795639.3|",{"$nulls":8},"X"]
["g51228.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P10394|POL4_DROME","Retrovirus-related Pol polyprotein from transposon 412","gi|861617032|gb|KMQ86489.1|",{"$nulls":4},{"v":0.020083529896521,"d":"0.02"},{"v":0.0156397560897999,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.0295984609120283,"d":"0.03"}]
["g51240.t1",8152,16787,null,"metabolic process","hydrolase activity",null,"ARATHwo_AT4G17830.2","Peptidase M20/M25/M40 family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity; INVOLVED IN: proteolysis, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), Peptidase M20, dimerisation (InterPro:IPR011650).","sp|Q9C5C4|ARGE_ARATH","Acetylornithine deacetylase","gi|218191391|gb|EEC73818.1|",null,null,"x","x",{"v":81.6735110691641,"d":"81.67"},{"v":12.5205045387155,"d":"12.52"},{"v":7.43879307276122,"d":"7.44"},{"v":10.1054053923336,"d":"10.11"}]
["g63070.t1",{"$nulls":6},"ARATHwo_AT4G17680.1","SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT5G47050.1); Has 422 Blast hits to 421 proteins in 63 species: Archae - 0; Bacteria - 11; Metazoa - 35; Fungi - 13; Plants - 325; Viruses - 3; Other Eukaryotes - 35 (source: NCBI BLink).","sp|Q4R747|LRC46_MACFA","Leucine-rich repeat-containing protein 46","gi|405973418|gb|EKC38135.1|",null,null,"x","x",{"v":0.152329704772012,"d":"0.15"},{"v":0.221394682293729,"d":"0.22"},{"v":18.937189623055,"d":"18.94"},{"v":0,"d":"0.00"}]
["g63086.t1"]
["g63102.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q17QR8|HARB1_BOVIN","Putative nuclease HARBI1","gi|557332538|ref|XP_006039066.1|",{"$nulls":8},"X"]
["g63120.t1",{"$nulls":20},"X","X"]
["g51253.t1",null,null,16020,null,null,"membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.0268371541438559,"d":"0.03"},{"v":0.170218342854338,"d":"0.17"},{"v":1.08357353403224,"d":"1.08"},{"v":0.377230494740901,"d":"0.38"},"X"]
["g51258.t1",{"$nulls":13},"x","x"]
["g51286.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink)."]
["g51302.t1",{"$nulls":8},"sp|O93209|POL_FFV","Pro-Pol polyprotein","gi|4432807|gb|AAD20658.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.224488974596713,"d":"0.22"},{"v":0.495173805321577,"d":"0.50"},{"v":0.263726370915308,"d":"0.26"},null,"X"]
["g51303.t1",{"$nulls":15},{"v":0.0781322049107561,"d":"0.08"},{"v":0.0872766510564697,"d":"0.09"},{"v":2.55247022112578,"d":"2.55"},{"v":0.632829331354847,"d":"0.63"},"X",null,"X"]
["g51319.t1",{"$nulls":15},{"v":2.32240337162155,"d":"2.32"},{"v":0.474022224725666,"d":"0.47"},{"v":0.0696492833751367,"d":"0.07"},{"v":2.11427469760499,"d":"2.11"}]
["g51344.t1",{"$nulls":8},"sp|Q9NU22|MDN1_HUMAN","Midasin","gi|871264077|ref|XP_012943742.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0526877388493496,"d":"0.05"},{"v":0.0579328822354107,"d":"0.06"}]
["g51354.t1","0006278:0015074","0003964:0003676",5634,"RNA-dependent DNA replication:DNA integration","RNA-directed DNA polymerase activity:nucleic acid binding","nucleus",{"$nulls":4},"gi|674229525|gb|KFK23310.1|",{"$nulls":4},{"v":0.0234313158693096,"d":"0.02"},{"v":0.216542751368166,"d":"0.22"},{"v":1.35443253744063,"d":"1.35"},{"v":0.233852456091182,"d":"0.23"},null,"X"]
["g64832.t1",{"$nulls":10},"gi|444705827|gb|ELW47215.1|",{"$nulls":4},{"v":0.0919702896592399,"d":"0.09"},{"v":0.425716813197848,"d":"0.43"},{"v":0.0954597047725217,"d":"0.10"},{"v":0,"d":"0.00"},null,"X"]
["g64850.t1",{"$nulls":10},"gi|546301773|ref|XP_005711507.1|",{"$nulls":4},{"v":7.62003810451695,"d":"7.62"},{"v":2.12737622262731,"d":"2.13"},{"v":3.66437362535609,"d":"3.66"},{"v":4.66721189964452,"d":"4.67"},null,"X"]
["g64867.t1",{"$nulls":6},"ARATHwo_AT5G51280.1","DEAD-box protein abstrakt, putative; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT4G33370.1); Has 46358 Blast hits to 45535 proteins in 3129 species: Archae - 906; Bacteria - 23651; Metazoa - 6388; Fungi - 4930; Plants - 2690; Viruses - 10; Other Eukaryotes - 7783 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.193739763125771,"d":"0.19"},{"v":0,"d":"0.00"},"X"]
["g51360.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|470112143|ref|XP_004292297.1|",{"$nulls":9},"X"]
["g51371.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.293968016844686,"d":"0.29"},{"v":3.59530520255264,"d":"3.60"},{"v":0,"d":"0.00"},null,"X","X"]
["g51386.t1"]
["g51403.t1",{"$nulls":19},"X",null,"X"]
["g51419.t1"]
["g51543.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.69936350960365,"d":"0.70"},{"v":0,"d":"0.00"}]
["g51550.t1"]
["g66760.t1",{"$nulls":13},"x","x",{"v":23.6225137413165,"d":"23.62"},{"v":20.7238172458196,"d":"20.72"},{"v":12.7110928451859,"d":"12.71"},{"v":19.9977125460695,"d":"20.00"}]
["g66777.t1",{"$nulls":6},"ARATHwo_AT3G43590.1","zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) family protein (TAIR:AT3G43490.1); Has 22952 Blast hits to 17782 proteins in 462 species: Archae - 2; Bacteria - 65; Metazoa - 3265; Fungi - 1419; Plants - 1360; Viruses - 15440; Other Eukaryotes - 1401 (source: NCBI BLink).","sp|Q04832|HEXP_LEIMA","DNA-binding protein HEXBP","gi|168006763|ref|XP_001756078.1|",null,null,"x","x",{"v":31.6677413425509,"d":"31.67"},{"v":18.7943182831647,"d":"18.79"},{"v":28.6482862056101,"d":"28.65"},{"v":13.5121382197993,"d":"13.51"},null,"X"]
["g66794.t1",{"$nulls":6},"ARATHwo_AT5G38840.1","SMAD/FHA domain-containing protein ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT5G47790.1); Has 18317 Blast hits to 13795 proteins in 1254 species: Archae - 157; Bacteria - 2798; Metazoa - 7417; Fungi - 1475; Plants - 704; Viruses - 54; Other Eukaryotes - 5712 (source: NCBI BLink).","sp|Q9BWU0|NADAP_HUMAN","Kanadaptin","gi|548846503|gb|ERN05779.1|",{"$nulls":4},{"v":2.84564010065195,"d":"2.85"},{"v":3.3475081102281,"d":"3.35"},{"v":5.22318744001581,"d":"5.22"},{"v":5.51823302004984,"d":"5.52"}]
["g66806.t1",55114,"0016491:0010181",null,"oxidation-reduction process","oxidoreductase activity:FMN binding",null,"ARATHwo_AT3G21140.1","Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); BEST Arabidopsis thaliana protein match is: Pyridoxamine 5'-phosphate oxidase family protein (TAIR:AT1G51560.1); Has 650 Blast hits to 650 proteins in 229 species: Archae - 0; Bacteria - 379; Metazoa - 7; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).","sp|Q9LU39|GLUBP_ARATH","Glutamyl-tRNA reductase-binding protein, chloroplastic","gi|356523451|ref|XP_003530352.1|",null,null,"x","x",{"v":4.91247415119925,"d":"4.91"},{"v":3.72395288000567,"d":"3.72"},{"v":2.24796601101354,"d":"2.25"},{"v":5.32564527044078,"d":"5.33"}]
["g51568.t1"]
["g51638.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.252753462745246,"d":"0.25"},{"v":0,"d":"0.00"}]
["g51655.t1",{"$nulls":15},{"v":0.0875319817998554,"d":"0.09"},{"v":1.50980955681854,"d":"1.51"},{"v":3.48106283583926,"d":"3.48"},{"v":1.40191375637278,"d":"1.40"},null,"X","X"]
["g51671.t1",{"$nulls":15},{"v":0.613416066489822,"d":"0.61"},{"v":0,"d":"0.00"},{"v":0.0493950489258593,"d":"0.05"},{"v":0.693965828953028,"d":"0.69"}]
["g51761.t1",{"$nulls":10},"gi|156396412|ref|XP_001637387.1|"]
["g292.t2",null,"0016772:0000166",null,null,"transferase activity, transferring phosphorus-containing groups:nucleotide binding",null,"ARATHwo_AT3G48190.1","Encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.","sp|Q9M3G7|ATM_ARATH","Serine/threonine-protein kinase ATM","gi|168037457|ref|XP_001771220.1|",null,null,"x","x",{"v":0.0247119012977716,"d":"0.02"},{"v":0.323516954464307,"d":"0.32"},{"v":0.817648634654096,"d":"0.82"},{"v":2.96889237783921,"d":"2.97"}]
["g304.t1"]
["g320.t1",{"$nulls":8},"sp|Q68801|POLG_HCVJK","Genome polyprotein",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.288679717742352,"d":"0.29"},{"v":0,"d":"0.00"},"X"]
["g338.t1",{"$nulls":10},"gi|242085572|ref|XP_002443211.1|",{"$nulls":8},"X"]
["g355.t1",null,16491,null,null,"oxidoreductase activity",null,"ARATHwo_AT3G51520.1","diacylglycerol acyltransferase family; FUNCTIONS IN: diacylglycerol O-acyltransferase activity, transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130); Has 1280 Blast hits to 1264 proteins in 273 species: Archae - 0; Bacteria - 248; Metazoa - 568; Fungi - 161; Plants - 127; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).","sp|Q9ASU1|DGAT2_ARATH","Diacylglycerol O-acyltransferase 2","gi|255078424|ref|XP_002502792.1|",{"$nulls":4},{"v":2.90565071128483,"d":"2.91"},{"v":5.91825459248969,"d":"5.92"},{"v":12.8050622148406,"d":"12.81"},{"v":2.39982559776924,"d":"2.40"}]
["g376.t1",{"$nulls":15},{"v":0.162767773630202,"d":"0.16"},{"v":1.58320858669361,"d":"1.58"},{"v":2.59610701721315,"d":"2.60"},{"v":0.510659361838616,"d":"0.51"},null,"X","X"]
["g390.t1"]
["g407.t1",6259,"0003676:0003824",null,"DNA metabolic process","nucleic acid binding:catalytic activity",{"$nulls":5},"gi|5001453|gb|AAD37020.1|",{"$nulls":8},"X"]
["g425.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).",null,null,"gi|565305677|gb|ETE60707.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.042539617216986,"d":"0.04"},{"v":0.444612017004999,"d":"0.44"},{"v":0,"d":"0.00"}]
["g68679.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0269289187205928,"d":"0.03"},{"v":0.242760660709221,"d":"0.24"},{"v":0.0380805758018733,"d":"0.04"},null,"X"]
["g68686.t1"]
["g68715.t1"]
["g68732.t1"]
["g68750.t1",{"$nulls":10},"gi|189208528|ref|XP_001940597.1|"]
["g68767.t1",{"$nulls":8},"sp|A2R7P5|NST1_ASPNC","Stress response protein nst1"]
["g68777.t1",{"$nulls":10},"gi|582957989|gb|EWC46201.1|",{"$nulls":4},{"v":1.60937755646128,"d":"1.61"},{"v":0.198839430491083,"d":"0.20"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g51778.t1",{"$nulls":15},{"v":0.21847415292797,"d":"0.22"},{"v":0.258706863919357,"d":"0.26"},{"v":1.0100972705281,"d":"1.01"},{"v":0,"d":"0.00"}]
["g51794.t1",{"$nulls":15},{"v":0.0492955104847234,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g51808.t1",{"$nulls":6},"ARATHwo_AT4G15020.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|902169579|gb|KNA07679.1|",{"$nulls":4},{"v":0.151083206512744,"d":"0.15"},{"v":0.196587732057099,"d":"0.20"},{"v":0.94319295558287,"d":"0.94"},{"v":0.442225291300544,"d":"0.44"}]
["g51824.t1",{"$nulls":6},"ARATHwo_AT4G15010.1","Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine carrier 2 (TAIR:AT1G34065.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q3SY17|S2552_HUMAN","Solute carrier family 25 member 52","gi|548832971|gb|ERM95740.1|",null,null,"x","x",{"v":3.46927188343287,"d":"3.47"},{"v":17.7902479162916,"d":"17.79"},{"v":10.9068362500859,"d":"10.91"},{"v":58.5468744431862,"d":"58.55"}]
["g51903.t1",{"$nulls":15},{"v":20.7774790425115,"d":"20.78"},{"v":5.46564634727141,"d":"5.47"},{"v":5.63357382839798,"d":"5.63"},{"v":0.161907440873862,"d":"0.16"}]
["g51909.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0385788561679996,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g70686.t1",{"$nulls":6},"ARATHwo_AT5G13860.1","ELCH-like (ELC-Like); FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, protein modification process, protein transport, post-translational protein modification; LOCATED IN: ESCRT I complex; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme/RWD-like protein (TAIR:AT3G12400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FFY6|ELCL_ARATH","Protein ELC-like","gi|729323859|ref|XP_010534320.1|",null,null,"x","x",{"v":3.348576487649,"d":"3.35"},{"v":18.8768333957165,"d":"18.88"},{"v":9.94588240469462,"d":"9.95"},{"v":2.23777804751945,"d":"2.24"}]
["g70702.t1",{"$nulls":8},"sp|Q82851|POL_JEMBR","Gag-Pol polyprotein","gi|691783584|emb|CDO78279.1|",{"$nulls":4},{"v":0.065439788955144,"d":"0.07"},{"v":0.380433378536778,"d":"0.38"},{"v":2.05088329040846,"d":"2.05"},{"v":4.0030678380239,"d":"4.00"},null,"X"]
["g70720.t1",{"$nulls":6},"ARATHwo_AT5G09260.1","vacuolar protein sorting-associated protein 20.2 (VPS20.2); INVOLVED IN: vesicle-mediated transport, N-terminal protein myristoylation; LOCATED IN: ESCRT III complex, plasma membrane; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G63880.1); Has 1828 Blast hits to 1807 proteins in 295 species: Archae - 35; Bacteria - 99; Metazoa - 731; Fungi - 367; Plants - 251; Viruses - 5; Other Eukaryotes - 340 (source: NCBI BLink).","sp|Q9FY89|VP202_ARATH","Vacuolar protein sorting-associated protein 20 homolog 2","gi|502137098|ref|XP_004502967.1|",null,null,"x","x",{"v":10.1983027449177,"d":"10.20"},{"v":18.0416795583848,"d":"18.04"},{"v":9.68196433659876,"d":"9.68"},{"v":9.1980140431071,"d":"9.20"},null,"X"]
["g70736.t1",{"$nulls":6},"ARATHwo_AT4G38350.2","Patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: Patched family protein (TAIR:AT1G42470.1).","sp|P56941|NPC1_PIG","Niemann-Pick C1 protein","gi|334187266|ref|NP_195548.6|",null,null,"x","x",{"v":9.12639635714861,"d":"9.13"},{"v":10.4837848087082,"d":"10.48"},{"v":27.5390589589934,"d":"27.54"},{"v":9.12539252378903,"d":"9.13"}]
["g51929.t1",{"$nulls":8},"sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.211905801441529,"d":"0.21"},{"v":0.0229443047652617,"d":"0.02"},"X"]
["g52026.t1",{"$nulls":6},"ARATHwo_AT4G20520.1","RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|34392572|dbj|BAC82617.1|",null,null,"x","x",{"v":0.118549162467959,"d":"0.12"},{"v":0.0397401586278173,"d":"0.04"},{"v":2.17430666236436,"d":"2.17"},{"v":0,"d":"0.00"},null,"X"]
["g78896.t1",9073,"0003849:0016832",null,"aromatic amino acid family biosynthetic process","3-deoxy-7-phosphoheptulonate synthase activity:aldehyde-lyase activity",null,"ARATHwo_AT1G16340.4","Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).","sp|Q9WYH8|AROF_THEMA","Phospho-2-dehydro-3-deoxyheptonate aldolase","gi|664383443|ref|WP_030910090.1|",{"$nulls":8},"X",null,null,"g78896"]
["g52056.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.195584915089954,"d":"0.20"},{"v":0.442945036294125,"d":"0.44"},{"v":0.287546176016367,"d":"0.29"},null,"X","X"]
["g52071.t1",{"$nulls":6},"ARATHwo_AT4G15020.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|593691413|ref|XP_007146276.1|",{"$nulls":4},{"v":0.206194562018983,"d":"0.21"},{"v":0.815955552394222,"d":"0.82"},{"v":0.973434478931988,"d":"0.97"},{"v":0,"d":"0.00"}]
["g52091.t1"]
["g52105.t1"]
["g72638.t1",{"$nulls":6},"ARATHwo_AT3G57880.1","Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT1G51570.1); Has 5845 Blast hits to 4237 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 3557; Fungi - 274; Plants - 1573; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).","sp|B8XCH5|QKY_ARATH","Protein QUIRKY","gi|901814724|gb|KMZ69093.1|",null,null,"x","x",{"v":2.59178543536111,"d":"2.59"},{"v":6.89596277652593,"d":"6.90"},{"v":4.8735761049819,"d":"4.87"},{"v":1.10662103951594,"d":"1.11"}]
["g72656.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.338830088438616,"d":"0.34"},{"v":1.08298404856061,"d":"1.08"},{"v":0,"d":"0.00"}]
["g72673.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|4432807|gb|AAD20658.1|",{"$nulls":4},{"v":0.108791085974104,"d":"0.11"},{"v":0.304378407307657,"d":"0.30"},{"v":0.510462661316324,"d":"0.51"},{"v":0.356757166747466,"d":"0.36"},null,"X"]
["g52120.t1",{"$nulls":15},{"v":0.0229697682351132,"d":"0.02"},{"v":0.0829102535735558,"d":"0.08"},{"v":12.5841999192319,"d":"12.58"},{"v":0.353118223918826,"d":"0.35"},null,"X","X"]
["g52128.t1"]
["g52143.t1",{"$nulls":8},"sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0803025969343617,"d":"0.08"},{"v":0.181185633315815,"d":"0.18"},{"v":0,"d":"0.00"},"X"]
["g52160.t1"]
["g52177.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|602649931|ref|XP_007431365.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.16129085151927,"d":"0.16"},{"v":0,"d":"0.00"}]
["g74625.t1",{"$nulls":10},"gi|672195145|ref|XP_008776475.1|",null,null,"x","x",{"v":8.46664808909513,"d":"8.47"},{"v":13.5551721600795,"d":"13.56"},{"v":7.81110965396441,"d":"7.81"},{"v":18.0716642697248,"d":"18.07"}]
["g74634.t1",{"$nulls":15},{"v":1.89386272859759,"d":"1.89"},{"v":52.8519541485215,"d":"52.85"},{"v":0.760390128848133,"d":"0.76"},{"v":543.866062363702,"d":"543.87"}]
["g74651.t1",{"$nulls":13},"x","x",{"v":14.9679885992259,"d":"14.97"},{"v":0.35410242174224,"d":"0.35"},{"v":1.09197368884015,"d":"1.09"},{"v":0,"d":"0.00"}]
["g74666.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0377490716479693,"d":"0.04"},{"v":0.0804591824369177,"d":"0.08"}]
["g74684.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.299806868551377,"d":"0.30"},{"v":0,"d":"0.00"}]
["g74694.t1",{"$nulls":15},{"v":0.240670757174749,"d":"0.24"},{"v":0.239270925627173,"d":"0.24"},{"v":0.550466196493059,"d":"0.55"},{"v":0.728123552140797,"d":"0.73"}]
["g52217.t1",{"$nulls":15},{"v":0.0608841615810328,"d":"0.06"},{"v":0,"d":"0.00"},{"v":0.143575914260681,"d":"0.14"},{"v":0.115145533081867,"d":"0.12"}]
["g52231.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|923655264|ref|XP_013645838.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.180640906082021,"d":"0.18"},{"v":1.00414215438775,"d":"1.00"},{"v":0.517669567851796,"d":"0.52"},"X"]
["g52248.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q9UR07|TF211_SCHPO","Transposon Tf2-11 polyprotein","gi|661175528|emb|CDH61236.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.285759571704127,"d":"0.29"},{"v":0,"d":"0.00"},"X"]
["g52263.t1",{"$nulls":8},"sp|Q5AG71|HSL1_CANAL","Serine/threonine-protein kinase HSL1"]
["g52278.t1",{"$nulls":15},{"v":0.149138890878784,"d":"0.15"},{"v":0.197001485227319,"d":"0.20"},{"v":0,"d":"0.00"},{"v":4.06749523050269,"d":"4.07"}]
["g52295.t1",{"$nulls":19},"X",null,"X"]
["g52382.t1",{"$nulls":8},"sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.12744818047146,"d":"0.13"},{"v":0,"d":"0.00"}]
["g52396.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.656047446367207,"d":"0.66"},{"v":0,"d":"0.00"}]
["g52412.t1",{"$nulls":19},"X",null,"X"]
["g52428.t1",{"$nulls":10},"gi|674230743|gb|KFK24528.1|",{"$nulls":4},{"v":0.0349516214562837,"d":"0.03"},{"v":0.039888287263061,"d":"0.04"},{"v":1.09605542888463,"d":"1.10"},{"v":0.159614794219192,"d":"0.16"},"X"]
["g52448.t1",{"$nulls":15},{"v":0.115711465832728,"d":"0.12"},{"v":0.387559402574655,"d":"0.39"},{"v":1.24721589974586,"d":"1.25"},{"v":0,"d":"0.00"},"X",null,"X"]
["g52462.t1",null,3676,null,null,"nucleic acid binding",null,"ARATHwo_AT4G06634.1","Encodes a C2H2-type zinc finger transcription factor with both tran- scriptional repression and activation domains, that binds a G-rich, 11-bp DNA-binding motif.","sp|Q2V3L3|Y4634_ARATH","Uncharacterized zinc finger protein At4g06634","gi|388503846|gb|AFK39989.1|",null,null,"x","x",{"v":8.95194127818153,"d":"8.95"},{"v":8.25298795181438,"d":"8.25"},{"v":8.61389834080081,"d":"8.61"},{"v":9.31364411491889,"d":"9.31"}]
["g78804.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G70460.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q9CAL8|PEK13_ARATH","Proline-rich receptor-like protein kinase PERK13","gi|157101304|dbj|BAF79983.1|",{"$nulls":4},{"v":0.190895338865646,"d":"0.19"},{"v":0.600145413270212,"d":"0.60"},{"v":0.156322067883387,"d":"0.16"},{"v":0.0404047026189877,"d":"0.04"}]
["g78821.t1",{"$nulls":15},{"v":0.161610192541983,"d":"0.16"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.339251865500274,"d":"0.34"}]
["g78839.t1"]
["g78845.t1",6412,"0046872:0003735:0019843",5840,"translation","metal ion binding:structural constituent of ribosome:rRNA binding","ribosome","ARATHwo_AT3G16080.1","Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT1G52300.1); Has 993 Blast hits to 993 proteins in 346 species: Archae - 294; Bacteria - 0; Metazoa - 303; Fungi - 142; Plants - 122; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).","sp|Q8LEM8|RL373_ARATH","60S ribosomal protein L37-3","gi|902213285|gb|KNA17230.1|",null,"x","x","x",{"v":1.3117532324136,"d":"1.31"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.244958862919779,"d":"0.24"}]
["g78875.t1",null,null,44424,null,null,"intracellular part","ARATHwo_AT5G65490.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9LSM5|ECD_ARATH","Protein ecdysoneless homolog","gi|586756751|ref|XP_006853416.1|",{"$nulls":4},{"v":2.96029339806416,"d":"2.96"},{"v":2.75980841038565,"d":"2.76"},{"v":1.86307313667736,"d":"1.86"},{"v":8.03695417412274,"d":"8.04"}]
["g52549.t1",{"$nulls":6},"ARATHwo_AT1G72430.1","SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G17345.1); Has 148 Blast hits to 148 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|823120447|ref|XP_012483070.1|",null,null,"x","x",{"v":2.39302759022697,"d":"2.39"},{"v":4.40728756361242,"d":"4.41"},{"v":19.5349342041475,"d":"19.53"},{"v":10.7276274779648,"d":"10.73"}]
["g52566.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.240092634468386,"d":"0.24"},{"v":0,"d":"0.00"}]
["g52567.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|670401854|ref|XP_008680790.1|",{"$nulls":4},{"v":0.016296291729402,"d":"0.02"},{"v":0.0187737770989132,"d":"0.02"},{"v":0.359471072820011,"d":"0.36"},{"v":0,"d":"0.00"},null,"X"]
["g52592.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|586720326|ref|XP_006848698.1|"]
["g52602.t1"]
["g52613.t1"]
["g81538.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|675363786|gb|KFM56688.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.290640398110869,"d":"0.29"},{"v":2.58650805823101,"d":"2.59"},{"v":0.475402020045615,"d":"0.48"},null,"X"]
["g81556.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.159286676326491,"d":"0.16"},{"v":0,"d":"0.00"},"X"]
["g81585.t1","0043170:0044238",null,null,"macromolecule metabolic process:primary metabolic process",null,null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|646722767|gb|KDR23651.1|",{"$nulls":4},{"v":0.0247394947871669,"d":"0.02"},{"v":0.196736413807342,"d":"0.20"},{"v":0.908365422249072,"d":"0.91"},{"v":0.754507851676162,"d":"0.75"},null,"X"]
["g52623.t1",{"$nulls":15},{"v":11.5370734917342,"d":"11.54"},{"v":36.8200952670149,"d":"36.82"},{"v":22.3321828937107,"d":"22.33"},{"v":10.094796133126,"d":"10.09"}]
["g52624.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|719991541|ref|XP_010253295.1|",{"$nulls":4},{"v":1.33316982649636,"d":"1.33"},{"v":2.40471878990973,"d":"2.40"},{"v":1.96513034608756,"d":"1.97"},{"v":0.269265210776405,"d":"0.27"},null,"X"]
["g52625.t1"]
["g52626.t1",{"$nulls":20},"X","X"]
["g52627.t1",{"$nulls":8},"sp|O95625|ZBT11_HUMAN","Zinc finger and BTB domain-containing protein 11","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0828043104478944,"d":"0.08"},{"v":0.216312196228558,"d":"0.22"},{"v":0.086290585113265,"d":"0.09"},{"v":0.155981290917994,"d":"0.16"},null,"X"]
["g52628.t1",{"$nulls":6},"ARATHwo_AT1G77230.1","Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G08320.1); Has 1613 Blast hits to 1438 proteins in 361 species: Archae - 117; Bacteria - 321; Metazoa - 455; Fungi - 164; Plants - 198; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).",null,null,"gi|302833201|ref|XP_002948164.1|",{"$nulls":4},{"v":4.03114381272316,"d":"4.03"},{"v":5.11793157898717,"d":"5.12"},{"v":9.57798586193168,"d":"9.58"},{"v":12.6641720541659,"d":"12.66"}]
["g52629.t1",8152,16758,16021,"metabolic process","transferase activity, transferring hexosyl groups","integral to membrane","ARATHwo_AT4G37690.1","Galactosyl transferase GMA12/MNN10 family protein; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: Galactosyl transferase GMA12/MNN10 family protein (TAIR:AT2G22900.1); Has 507 Blast hits to 506 proteins in 109 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 185; Plants - 285; Viruses - 4; Other Eukaryotes - 29 (source: NCBI BLink).","sp|P50108|MNN10_YEAST","Probable alpha-1,6-mannosyltransferase MNN10","gi|302793604|ref|XP_002978567.1|",null,null,"x","x",{"v":1.41141997929988,"d":"1.41"},{"v":1.57257287214984,"d":"1.57"},{"v":1.44694754869557,"d":"1.45"},{"v":1.13447822607883,"d":"1.13"}]
["g52630.t1",{"$nulls":12},"x","x","x",{"v":3.50993652864151,"d":"3.51"},{"v":6.96226289656409,"d":"6.96"},{"v":6.20556531250314,"d":"6.21"},{"v":5.04761948238136,"d":"5.05"}]
["g52631.t1"]
["g52632.t3",{"$nulls":6},"ARATHwo_AT1G79700.2","Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ARIA-interacting double AP2 domain protein (TAIR:AT1G16060.1); Has 7501 Blast hits to 5104 proteins in 263 species: Archae - 0; Bacteria - 38; Metazoa - 0; Fungi - 0; Plants - 7383; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink).","sp|Q9FH95|TOE3_ARATH","AP2-like ethylene-responsive transcription factor TOE3","gi|661892097|emb|CDP04323.1|",null,null,"x","x",{"v":1.71432296013772,"d":"1.71"},{"v":1.98306813912718,"d":"1.98"},{"v":15.3782488733926,"d":"15.38"},{"v":2.72691728716773,"d":"2.73"}]
["g52632.t1",{"$nulls":6},"ARATHwo_AT5G57390.1","Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental transition between the embryonic and vegetative phases in plants.Overexpression results in the formation of somatic embryos on cotyledons.","sp|Q8LSN2|BBM2_BRANA","AP2-like ethylene-responsive transcription factor BBM2","gi|661892097|emb|CDP04323.1|",null,null,"x","x",{"v":1.71432296013772,"d":"1.71"},{"v":1.98306813912718,"d":"1.98"},{"v":15.3782488733926,"d":"15.38"},{"v":2.72691728716773,"d":"2.73"}]
["g52632.t2",{"$nulls":6},"ARATHwo_AT1G51190.1","Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.","sp|Q5YGP7|PLET2_ARATH","AP2-like ethylene-responsive transcription factor PLT2","gi|661892097|emb|CDP04323.1|",null,null,"x","x",{"v":1.71432296013772,"d":"1.71"},{"v":1.98306813912718,"d":"1.98"},{"v":15.3782488733926,"d":"15.38"},{"v":2.72691728716773,"d":"2.73"}]
["g52633.t1",{"$nulls":6},"ARATHwo_AT2G46170.1","Reticulon family protein; INVOLVED IN: response to karrikin; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 1230 Blast hits to 1228 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 7; Plants - 492; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).","sp|O82352|RTNLE_ARATH","Reticulon-like protein B5","gi|729295772|ref|XP_010541290.1|",null,null,"x","x",{"v":67.7373173790077,"d":"67.74"},{"v":105.539993596438,"d":"105.54"},{"v":40.9217936618946,"d":"40.92"},{"v":28.7187539067028,"d":"28.72"}]
["g52634.t1",{"$nulls":6},"ARATHwo_AT4G29960.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|361069307|gb|AEW08965.1|",{"$nulls":4},{"v":7.75437820870565,"d":"7.75"},{"v":9.45243197517213,"d":"9.45"},{"v":7.42326340812271,"d":"7.42"},{"v":2.40262501705274,"d":"2.40"}]
["g52634.t2",{"$nulls":10},"gi|361069307|gb|AEW08965.1|",{"$nulls":4},{"v":7.75437820870565,"d":"7.75"},{"v":9.45243197517213,"d":"9.45"},{"v":7.42326340812271,"d":"7.42"},{"v":2.40262501705274,"d":"2.40"}]
["g79383.t1",null,null,16023,null,null,"cytoplasmic membrane-bounded vesicle","ARATHwo_AT5G19730.1","Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q8VYZ3|PME53_ARATH","Probable pectinesterase 53","gi|502138689|ref|XP_004503496.1|",null,null,"x","x",{"v":0.722078568921487,"d":"0.72"},{"v":0.244426722104244,"d":"0.24"},{"v":0.580640353266367,"d":"0.58"},{"v":0,"d":"0.00"}]
["g52635.t1"]
["g52636.t1",6633,"0000036:0016297",9507,"fatty acid biosynthetic process","ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process:acyl-[acyl-carrier-protein] hydrolase activity","chloroplast","ARATHwo_AT4G13050.1","Acyl-ACP thioesterase; FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: fatA acyl-ACP thioesterase (TAIR:AT3G25110.1); Has 1268 Blast hits to 1268 proteins in 529 species: Archae - 0; Bacteria - 942; Metazoa - 0; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).","sp|Q9SV64|FATA2_ARATH","Oleoyl-acyl carrier protein thioesterase 2, chloroplastic","gi|672141517|ref|XP_008794588.1|",null,null,"x","x",{"v":32.727459514459,"d":"32.73"},{"v":28.1706315115968,"d":"28.17"},{"v":16.8668805335062,"d":"16.87"},{"v":14.9155654784859,"d":"14.92"}]
["g52637.t1",{"$nulls":13},"x","x",{"v":5.62767844547002,"d":"5.63"},{"v":2.90563737970937,"d":"2.91"},{"v":2.04191868177075,"d":"2.04"},{"v":0.449355599287111,"d":"0.45"}]
["g52638.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|657964185|ref|XP_008373720.1|",{"$nulls":4},{"v":0.0176133958464295,"d":"0.02"},{"v":0.192946564212483,"d":"0.19"},{"v":0.435564162260533,"d":"0.44"},{"v":0.241489601557636,"d":"0.24"},null,"X"]
["g52639.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.172602244704393,"d":"0.17"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g52640.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0637459222035197,"d":"0.06"},{"v":0,"d":"0.00"}]
["g52641.t1"]
["g79385.t1"]
["g52642.t1","0006260:0055114","0005524:0004748",null,"DNA replication:oxidation-reduction process","ATP binding:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor",null,"ARATHwo_AT2G21790.1","encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair","sp|Q9SJ20|RIR1_ARATH","Ribonucleoside-diphosphate reductase large subunit","gi|168046427|ref|XP_001775675.1|",null,null,"x","x",{"v":1.70448548981799,"d":"1.70"},{"v":7.40696463190714,"d":"7.41"},{"v":6.34880272785683,"d":"6.35"},{"v":2.78573290582301,"d":"2.79"}]
["g52643.t1","0070084:0006508","0046872:0070006",5737,"protein initiator methionine removal:proteolysis","metal ion binding:metalloaminopeptidase activity","cytoplasm","ARATHwo_AT3G59990.1","Encodes a MAP2 like methionine aminopeptidase","sp|Q56Y85|MAP22_ARATH","Methionine aminopeptidase 2B","gi|474045604|gb|EMS53452.1|",null,null,"x","x",{"v":40.3034570416604,"d":"40.30"},{"v":43.7137594575815,"d":"43.71"},{"v":31.5842152435723,"d":"31.58"},{"v":60.18206188617,"d":"60.18"}]
["g52644.t1",{"$nulls":15},{"v":1.92223515264954,"d":"1.92"},{"v":13.7587361124892,"d":"13.76"},{"v":7.89419654285918,"d":"7.89"},{"v":44.0321616108506,"d":"44.03"}]
["g52645.t1",{"$nulls":10},"gi|669318438|gb|KFD59312.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0676607244907306,"d":"0.07"},{"v":0,"d":"0.00"},"X"]
["g52646.t1",{"$nulls":15},{"v":0.0326991297527091,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.0422568980786877,"d":"0.04"},{"v":0,"d":"0.00"},null,"X","X"]
["g52647.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|658032340|ref|XP_008351676.1|",{"$nulls":9},"X"]
["g52648.t1",{"$nulls":13},"x","x"]
["g52649.t1",{"$nulls":6},"ARATHwo_AT3G29130.2","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371).","sp|Q9VTY4|KXDL1_DROME","KxDL motif-containing protein CG10681","gi|168023017|ref|XP_001764035.1|",null,null,"x","x",{"v":4.78601821544597,"d":"4.79"},{"v":1.81340847996301,"d":"1.81"},{"v":1.52983731902875,"d":"1.53"},{"v":6.74089173542481,"d":"6.74"}]
["g52650.t1",{"$nulls":15},{"v":0.0921430475142325,"d":"0.09"},{"v":0.174833269479944,"d":"0.17"},{"v":2.1474488988862,"d":"2.15"},{"v":0.393039257670273,"d":"0.39"},"X",null,"X"]
["g52651.t1",{"$nulls":15},{"v":0.600204511744681,"d":"0.60"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g79389.t1",{"$nulls":6},"ARATHwo_AT1G22660.1","Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 8643 Blast hits to 8635 proteins in 2546 species: Archae - 2; Bacteria - 6091; Metazoa - 128; Fungi - 234; Plants - 120; Viruses - 8; Other Eukaryotes - 2060 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":2.19270124743645,"d":"2.19"},{"v":0.597123367118426,"d":"0.60"},{"v":1.57242675776857,"d":"1.57"},{"v":1.8127393796146,"d":"1.81"}]
["g79390.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":1.68084687816763,"d":"1.68"},{"v":10.3843113976048,"d":"10.38"},{"v":6.03419168975018,"d":"6.03"},"X",null,"X"]
["g52652.t1",{"$nulls":10},"gi|406696792|gb|EKD00067.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.281942410861434,"d":"0.28"},{"v":0.0654223861079177,"d":"0.07"},null,"X"]
["g52653.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.131588133149896,"d":"0.13"},{"v":0.03630325108082,"d":"0.04"},{"v":0.052181597754043,"d":"0.05"},"X",null,"X"]
["g52654.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P05400|POL_CERV","Enzymatic polyprotein","gi|657948755|ref|XP_008339280.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.122553776136182,"d":"0.12"},{"v":1.16290829003532,"d":"1.16"},{"v":0.222931214685148,"d":"0.22"},"X"]
["g52655.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",null,"ARATHwo_AT5G54370.1","Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT4G27400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|55168131|gb|AAV43998.1|",{"$nulls":4},{"v":1.2585568454517,"d":"1.26"},{"v":0.676291214587781,"d":"0.68"},{"v":20.7213361751387,"d":"20.72"},{"v":1.71224136561912,"d":"1.71"},null,"X"]
["g52656.t1",{"$nulls":8},"sp|P03364|POL_SMRVH","Pol polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.220886415454006,"d":"0.22"},{"v":0.275014817862003,"d":"0.28"},"X"]
["g52657.t1",null,5524,null,null,"ATP binding",null,"ARATHwo_AT2G39730.1","Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Involved in jasmonate-induced leaf senescence.","sp|Q40460|RCA1_TOBAC","Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic","gi|747060717|ref|XP_011076799.1|","x",{"$nulls":3},{"v":382.308585366101,"d":"382.31"},{"v":58.894098987655,"d":"58.89"},{"v":25.1540309482961,"d":"25.15"},{"v":0.187061769714794,"d":"0.19"}]
["g52658.t1","0044763:0051276",3677,"0044454:0000777:0000786","single-organism cellular process:chromosome organization","DNA binding","nuclear chromosome part:condensed chromosome kinetochore:nucleosome","ARATHwo_AT1G19890.1","histone 3.3, male-gamete-specific expression. Direct target promoter of the male germline-specific transcription factor DUO1.","sp|Q6CTI2|CENPA_KLULA","Histone H3-like centromeric protein CSE4","gi|514683947|ref|XP_004989554.1|"]
["g52659.t1"]
["g52660.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.343719667618756,"d":"0.34"},{"v":0.364323267176836,"d":"0.36"},{"v":0,"d":"0.00"},"X",null,"X"]
["g52661.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.740870676070898,"d":"0.74"},{"v":0,"d":"0.00"},"X",null,"X"]
["g52662.t1",{"$nulls":6},"ARATHwo_AT3G54650.1","FBL17; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: generative cell mitosis, seed development, embryo development, ubiquitin-dependent protein catabolic process, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); Has 1738 Blast hits to 1195 proteins in 149 species: Archae - 0; Bacteria - 27; Metazoa - 733; Fungi - 89; Plants - 663; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).","sp|Q9CZV8|FXL20_MOUSE","F-box/LRR-repeat protein 20",{"$nulls":3},"x","x",{"v":4.49867882097772,"d":"4.50"},{"v":0.699932286246464,"d":"0.70"},{"v":1.0540798208649,"d":"1.05"},{"v":1.80310841702051,"d":"1.80"}]
["g52663.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|731352218|ref|XP_010687431.1|",{"$nulls":8},"X"]
["g52664.t1",{"$nulls":10},"gi|302828970|ref|XP_002946052.1|",{"$nulls":4},{"v":0.213137028553748,"d":"0.21"},{"v":0,"d":"0.00"},{"v":0.136670111703296,"d":"0.14"},{"v":0,"d":"0.00"}]
["g52665.t1",{"$nulls":15},{"v":0.0775850031394863,"d":"0.08"},{"v":0.145950505610167,"d":"0.15"},{"v":1.30004534756969,"d":"1.30"},{"v":0.379235237257317,"d":"0.38"},"X",null,"X"]
["g52666.t1"]
["g52667.t1",{"$nulls":8},"sp|P10401|POLY_DROME","Retrovirus-related Pol polyprotein from transposon gypsy","gi|702455653|ref|XP_010026793.1|",{"$nulls":8},"X"]
["g52668.t1"]
["g52669.t1",8152,16772,null,"metabolic process","transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT5G50330.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G24810.2); Has 9594 Blast hits to 9572 proteins in 1815 species: Archae - 124; Bacteria - 4421; Metazoa - 409; Fungi - 573; Plants - 708; Viruses - 16; Other Eukaryotes - 3343 (source: NCBI BLink).","sp|P73577|Y889_SYNY3","Uncharacterized protein slr0889","gi|168042609|ref|XP_001773780.1|",{"$nulls":4},{"v":1.10720208507386,"d":"1.11"},{"v":9.21726679825467,"d":"9.22"},{"v":9.05255574821702,"d":"9.05"},{"v":1.66534664286392,"d":"1.67"}]
["g52670.t1",{"$nulls":13},"x","x",{"v":1.26234581853337,"d":"1.26"},{"v":2.39659517944269,"d":"2.40"},{"v":2.03110908059577,"d":"2.03"},{"v":4.21843539951372,"d":"4.22"}]
["g52671.t1",{"$nulls":15},{"v":0.191039363199601,"d":"0.19"},{"v":0.553406594968709,"d":"0.55"},{"v":0.84181487989688,"d":"0.84"},{"v":0.181080068336882,"d":"0.18"}]
["g52672.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659121350|ref|XP_008460615.1|",{"$nulls":4},{"v":0.0722290802434473,"d":"0.07"},{"v":0.115725613823193,"d":"0.12"},{"v":0.642065188051644,"d":"0.64"},{"v":0.192209534928939,"d":"0.19"},"X"]
["g79411.t1",55085,null,16020,"transmembrane transport",null,"membrane",null,null,"sp|P0AFV0|YIBH_ECOLI","Inner membrane protein YibH","gi|446287061|ref|WP_000364916.1|",{"$nulls":11},"g79411"]
["g52673.t1",{"$nulls":19},"X",null,"X"]
["g52674.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT1G50240.2","The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene. Cytokinesis-defective mutants, which we named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED.","sp|P73469|SPKF_SYNY3","Serine/threonine-protein kinase F","gi|737162515|ref|WP_035148980.1|",{"$nulls":4},{"v":0.306348936788701,"d":"0.31"},{"v":0.254560818999687,"d":"0.25"},{"v":0.204359682061838,"d":"0.20"},{"v":0.194069653370259,"d":"0.19"}]
["g52675.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":9},"X"]
["g52676.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|571504288|ref|XP_003543854.2|"]
["g52677.t1"]
["g52678.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.","sp|Q8AII1|POL_SIVTN","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.118371843653198,"d":"0.12"},{"v":0.442104125836558,"d":"0.44"},{"v":0.154412344771586,"d":"0.15"},null,"X"]
["g52679.t1",{"$nulls":6},"ARATHwo_AT4G15880.1","EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.","sp|Q91ZX6|SENP2_MOUSE","Sentrin-specific protease 2","gi|635370989|emb|CCI40892.1|"]
["g52680.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|695010647|ref|XP_009392001.1|",{"$nulls":9},"X"]
["g52681.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|502168070|ref|XP_004514312.1|"]
["g52682.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.85923699965685,"d":"1.86"}]
["g52683.t1",{"$nulls":6},"ARATHwo_AT1G33240.1","Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. Regulates ploidy-dependent cell growth in trichome.","sp|Q9C882|GTL1_ARATH","Trihelix transcription factor GTL1",null,"x"]
["g52684.t1","0070918:0035194:0006950",16301,44464,"production of small RNA involved in gene silencing by RNA:posttranscriptional gene silencing by RNA:response to stress","kinase activity","cell part","ARATHwo_AT1G26150.1","Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).","sp|Q9C660|PEK10_ARATH","Proline-rich receptor-like protein kinase PERK10","gi|157101304|dbj|BAF79983.1|"]
["g52685.t1",{"$nulls":15},{"v":3.03509755144546,"d":"3.04"},{"v":9.42090415633713,"d":"9.42"},{"v":7.24800146450876,"d":"7.25"},{"v":2.89788308623483,"d":"2.90"}]
["g52686.t1","0080119:0006888:0008284:0006886:0006487",8270,"0000139:0033116:0030127:0005789","ER body organization:ER to Golgi vesicle-mediated transport:positive regulation of cell proliferation:intracellular protein transport:protein N-linked glycosylation","zinc ion binding","Golgi membrane:endoplasmic reticulum-Golgi intermediate compartment membrane:COPII vesicle coat:endoplasmic reticulum membrane","ARATHwo_AT3G07100.1","Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology.","sp|Q9SFU0|SC24A_ARATH","Protein transport protein Sec24-like At3g07100","gi|224285155|gb|ACN40305.1|",{"$nulls":4},{"v":3.46958190092225,"d":"3.47"},{"v":26.0242664277787,"d":"26.02"},{"v":12.5854492912228,"d":"12.59"},{"v":24.0217216844196,"d":"24.02"}]
["g52687.t1",{"$nulls":6},"ARATHwo_AT5G60530.1","late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q24UI6|IF2_DESHY","Translation initiation factor IF-2",{"$nulls":3},"x","x",{"v":1.24959025916336,"d":"1.25"},{"v":0.126528403073672,"d":"0.13"},{"v":0.388574832109019,"d":"0.39"},{"v":0,"d":"0.00"}]
["g52688.t1"]
["g52689.t1",{"$nulls":6},"ARATHwo_AT5G57960.1","GTP-binding protein, HflX; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HflX (InterPro:IPR016496), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding protein, HflX (TAIR:AT3G49725.1); Has 31952 Blast hits to 30531 proteins in 2948 species: Archae - 298; Bacteria - 25096; Metazoa - 510; Fungi - 190; Plants - 240; Viruses - 0; Other Eukaryotes - 5618 (source: NCBI BLink).","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":2.98003236352464,"d":"2.98"},{"v":0.87376267358884,"d":"0.87"},{"v":1.38262079655919,"d":"1.38"},{"v":0.411749264675733,"d":"0.41"},null,"X"]
["g52690.t1",{"$nulls":15},{"v":0.0504802485282479,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.278058901669592,"d":"0.28"},{"v":0,"d":"0.00"},"X",null,"X"]
["g52691.t1",6897,5525,9507,"endocytosis","GTP binding","chloroplast","ARATHwo_AT5G57960.1","GTP-binding protein, HflX; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HflX (InterPro:IPR016496), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding protein, HflX (TAIR:AT3G49725.1); Has 31952 Blast hits to 30531 proteins in 2948 species: Archae - 298; Bacteria - 25096; Metazoa - 510; Fungi - 190; Plants - 240; Viruses - 0; Other Eukaryotes - 5618 (source: NCBI BLink).","sp|D9R4W7|HFLX_CLOSW","GTPase HflX","gi|168039777|ref|XP_001772373.1|",null,null,"x","x",{"v":13.6918338269628,"d":"13.69"},{"v":4.68963959538398,"d":"4.69"},{"v":6.11128561085154,"d":"6.11"},{"v":4.94265217220419,"d":"4.94"}]
["g79424.t1","0016050:0010027",null,"0009508:0009570:0009706:0009535","vesicle organization:thylakoid membrane organization",null,"plastid chromosome:chloroplast stroma:chloroplast inner membrane:chloroplast thylakoid membrane","ARATHwo_AT1G65260.1","Encodes a protein required for thylakoid membrane formation.","sp|O80796|VIPP1_ARATH","Membrane-associated protein VIPP1, chloroplastic","gi|168007558|ref|XP_001756475.1|",null,"x","x","x",{"v":112.113307381744,"d":"112.11"},{"v":34.9425878399759,"d":"34.94"},{"v":21.6988593250975,"d":"21.70"},{"v":15.8340753463796,"d":"15.83"}]
["g52692.t1",{"$nulls":13},"x","x",{"v":39.0079936210378,"d":"39.01"},{"v":9.62761113799946,"d":"9.63"},{"v":6.136517926207,"d":"6.14"},{"v":3.47063066147305,"d":"3.47"}]
["g52693.t1",{"$nulls":6},"ARATHwo_AT5G38720.1","unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink).","sp|Q5RA17|RRP7A_PONAB","Ribosomal RNA-processing protein 7 homolog A",{"$nulls":3},"x","x"]
["g52694.t1"]
["g52695.t1","0048608:0051301:0008152:0009791:0048513:0050794:0044702:0050896:0048367",16301,"0044464:0016020","reproductive structure development:cell division:metabolic process:post-embryonic development:organ development:regulation of cellular process:single organism reproductive process:response to stimulus:shoot system development","kinase activity","cell part:membrane","ARATHwo_AT5G49760.1","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G49770.1); Has 176974 Blast hits to 136078 proteins in 4850 species: Archae - 147; Bacteria - 18062; Metazoa - 52743; Fungi - 11116; Plants - 72814; Viruses - 462; Other Eukaryotes - 21630 (source: NCBI BLink).","sp|Q9FIL7|CRCK1_ARATH","Calmodulin-binding receptor-like cytoplasmic kinase 1","gi|922375632|ref|XP_003601388.2|",null,null,"x","x",{"v":0.166365099090505,"d":"0.17"},{"v":0.123715491713536,"d":"0.12"},{"v":0,"d":"0.00"},{"v":2.37395433344988,"d":"2.37"}]
["g52696.t1",{"$nulls":6},"ARATHwo_AT2G34300.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G29470.2); Has 54799 Blast hits to 24520 proteins in 1584 species: Archae - 172; Bacteria - 14723; Metazoa - 14369; Fungi - 4484; Plants - 2850; Viruses - 543; Other Eukaryotes - 17658 (source: NCBI BLink).","sp|Q8IDX6|RBP2A_PLAF7","Reticulocyte-binding protein 2 homolog a"]
["g52697.t1",{"$nulls":6},"ARATHwo_AT2G31770.1","ARIADNE 9 (ARI9); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G31760.1); Has 3142 Blast hits to 3098 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 1294; Fungi - 651; Plants - 677; Viruses - 13; Other Eukaryotes - 507 (source: NCBI BLink).","sp|Q9SKC3|ARI9_ARATH","Probable E3 ubiquitin-protein ligase ARI9","gi|749165173|ref|XP_011134215.1|",{"$nulls":4},{"v":0.0425569902709465,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.0227877099094246,"d":"0.02"},{"v":0,"d":"0.00"}]
["g52698.t1",{"$nulls":20},"X","X"]
["g52699.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",null,null,"gi|548834102|gb|ERM96539.1|"]
["g52700.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|595484032|gb|EXX71174.1|",{"$nulls":8},"X"]
["g79432.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0329583303269004,"d":"0.03"},{"v":0.161003409208595,"d":"0.16"},{"v":0,"d":"0.00"},"X",null,"X"]
["g79447.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.682381038110978,"d":"0.68"},{"v":0,"d":"0.00"},"X",null,"X"]
["g79449.t1"]
["g84827.t1",{"$nulls":6},"ARATHwo_AT4G31040.1","CemA-like proton extrusion protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CemA (InterPro:IPR004282); BEST Arabidopsis thaliana protein match is: CemA-like proton extrusion protein-related (TAIR:ATCG00530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|A6MVV9|CEMA_RHDSA","Chloroplast envelope membrane protein","gi|168038427|ref|XP_001771702.1|",{"$nulls":4},{"v":3.58550090529516,"d":"3.59"},{"v":2.79325140626362,"d":"2.79"},{"v":1.41615741167004,"d":"1.42"},{"v":0.592761188587856,"d":"0.59"}]
["g84828.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|661175507|emb|CDH61247.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0233494612658108,"d":"0.02"},{"v":0.746375128647811,"d":"0.75"},{"v":0.162838321684427,"d":"0.16"},null,"X"]
["g84829.t1",null,"0008289:0003677",5634,null,"lipid binding:DNA binding","nucleus",{"$nulls":4},"gi|89514839|gb|ABD75294.1|",null,null,"x","x",{"v":6.02507262270733,"d":"6.03"},{"v":1.94571065573712,"d":"1.95"},{"v":5.03474031896785,"d":"5.03"},{"v":0.352732888177056,"d":"0.35"}]
["g84830.t1",6355,"0003700:0043565:0008289",5634,"regulation of transcription, DNA-dependent","sequence-specific DNA binding transcription factor activity:sequence-specific DNA binding:lipid binding","nucleus","ARATHwo_AT5G60690.1","REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA.","sp|A2XK30|HOX32_ORYSI","Homeobox-leucine zipper protein HOX32","gi|89514839|gb|ABD75294.1|",{"$nulls":4},{"v":9.11707432701679,"d":"9.12"},{"v":1.11246078906116,"d":"1.11"},{"v":3.88464805916962,"d":"3.88"},{"v":0.102433035674973,"d":"0.10"}]
["g84831.t1",6412,3735,5840,"translation","structural constituent of ribosome","ribosome","ARATHwo_AT4G18100.1","Ribosomal protein L32e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: callus, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: Ribosomal protein L32e (TAIR:AT5G46430.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P49211|RL321_ARATH","60S ribosomal protein L32-1","gi|168053177|ref|XP_001779014.1|",{"$nulls":4},{"v":0.958551066303675,"d":"0.96"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g84832.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.274863507150953,"d":"0.27"},{"v":0.757672946304072,"d":"0.76"},{"v":0.283903132655319,"d":"0.28"},null,"X"]
["g84833.t1"]
["g84834.t1",{"$nulls":15},{"v":0.0264353474507892,"d":"0.03"},{"v":0.0281516619033181,"d":"0.03"},{"v":0.0456749884110903,"d":"0.05"},{"v":0,"d":"0.00"}]
["g84835.t1","0006278:0006310","0003964:0003677:0003723",null,"RNA-dependent DNA replication:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding",{"$nulls":5},"gi|595441411|gb|EXX53826.1|",{"$nulls":8},"X"]
["g84836.t1",{"$nulls":20},"X","X"]
["g84837.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.117278509672136,"d":"0.12"},{"v":0,"d":"0.00"},"X",null,"X"]
["g84838.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.124191541797139,"d":"0.12"},{"v":0.222378590702055,"d":"0.22"},{"v":0,"d":"0.00"}]
["g84839.t1"]
["g84840.t1",{"$nulls":19},"X",null,"X"]
["g84841.t1","0009644:0006979:0009409:0042254:0006412","0003735:0019843:0000166","0005794:0022625:0016020","response to high light intensity:response to oxidative stress:response to cold:ribosome biogenesis:translation","structural constituent of ribosome:rRNA binding:nucleotide binding","Golgi apparatus:cytosolic large ribosomal subunit:membrane","ARATHwo_AT3G55280.1","60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA","sp|Q9AT35|RL23A_DAUCA","60S ribosomal protein L23a","gi|147858034|emb|CAN80351.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.459239045042719,"d":"0.46"},{"v":0,"d":"0.00"}]
["g84842.t1",{"$nulls":10},"gi|568440035|ref|XP_006455814.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0871979090745923,"d":"0.09"},{"v":0.669466882762789,"d":"0.67"},{"v":0.285088956832006,"d":"0.29"}]
["g84843.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|727651886|ref|XP_010496662.1|",{"$nulls":4},{"v":0.0185387076146237,"d":"0.02"},{"v":0.104194762637628,"d":"0.10"},{"v":0.343500404828554,"d":"0.34"},{"v":0.139529647501588,"d":"0.14"},null,"X"]
["g84844.t1",{"$nulls":13},"x","x",{"v":16.7788008037172,"d":"16.78"},{"v":4.91700902869698,"d":"4.92"},{"v":6.24793602720982,"d":"6.25"},{"v":0.44601268103819,"d":"0.45"}]
["g84845.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.107835795234867,"d":"0.11"},{"v":0,"d":"0.00"},"X",null,"X"]
["g84846.t1",{"$nulls":10},"gi|302826625|ref|XP_002994742.1|"]
["g84847.t1",{"$nulls":13},"x","x",{"v":0.0497249575746641,"d":"0.05"},{"v":0.454095670468185,"d":"0.45"},{"v":1.94224488934072,"d":"1.94"},{"v":0.526176711349591,"d":"0.53"},"X",null,"X"]
["g84848.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT2G36580.1","Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT3G52990.1); Has 9777 Blast hits to 9740 proteins in 2682 species: Archae - 166; Bacteria - 5919; Metazoa - 530; Fungi - 219; Plants - 545; Viruses - 0; Other Eukaryotes - 2398 (source: NCBI BLink).","sp|Q2RAK2|KPYC1_ORYSJ","Pyruvate kinase 1, cytosolic","gi|902172961|gb|KNA08192.1|",{"$nulls":4},{"v":9.45931303696734,"d":"9.46"},{"v":11.7026490659026,"d":"11.70"},{"v":17.3760793131465,"d":"17.38"},{"v":1.59316108299351,"d":"1.59"}]
["g84849.t1",{"$nulls":12},"x","x","x",{"v":8.03753320888432,"d":"8.04"},{"v":0.600796184776505,"d":"0.60"},{"v":21.7011208397722,"d":"21.70"},{"v":1.04132707817706,"d":"1.04"}]
["g84850.t1",{"$nulls":6},"ARATHwo_AT3G09430.1","unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|116780660|gb|ABK21759.1|",{"$nulls":4},{"v":0.356162709429983,"d":"0.36"},{"v":0.631197646141634,"d":"0.63"},{"v":0.578289377095974,"d":"0.58"},{"v":2.14933498865549,"d":"2.15"}]
["g84851.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0.0613604118887185,"d":"0.06"},{"v":0.0433923085215684,"d":"0.04"},{"v":0.454982142917924,"d":"0.45"},{"v":0,"d":"0.00"},null,"X"]
["g84852.t1","0010155:0006655:0007131:0009793:0006400:0009691:0016226:0046777:0000079:0009073","0051539:0016740:0046872",5739,"regulation of proton transport:phosphatidylglycerol biosynthetic process:reciprocal meiotic recombination:embryo development ending in seed dormancy:tRNA modification:cytokinin biosynthetic process:iron-sulfur cluster assembly:protein autophosphorylation:regulation of cyclin-dependent protein serine/threonine kinase activity:aromatic amino acid family biosynthetic process","4 iron, 4 sulfur cluster binding:transferase activity:metal ion binding","mitochondrion","ARATHwo_AT4G36390.1","Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, transferase activity, catalytic activity; INVOLVED IN: RNA modification, tRNA modification; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463), Methylthiotransferase, conserved site (InterPro:IPR020612), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1); Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356; Bacteria - 9631; Metazoa - 288; Fungi - 1; Plants - 108; Viruses - 0; Other Eukaryotes - 5226 (source: NCBI BLink).","sp|Q2R1U4|CK5P1_ORYSJ","CDK5RAP1-like protein","gi|573961729|ref|XP_006663020.1|",{"$nulls":4},{"v":4.83821971061544,"d":"4.84"},{"v":5.53252315839938,"d":"5.53"},{"v":3.99682359954006,"d":"4.00"},{"v":5.99254607603661,"d":"5.99"}]
["g84853.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0314641509264699,"d":"0.03"},{"v":0.153746341117025,"d":"0.15"},{"v":0.476919624415369,"d":"0.48"},null,"X","X"]
["g84854.t1","0042450:0016310:0006561","0004042:0005524:0034618:0003991:0004349","0009534:0009570","arginine biosynthetic process via ornithine:phosphorylation:proline biosynthetic process","acetyl-CoA:L-glutamate N-acetyltransferase activity:ATP binding:arginine binding:acetylglutamate kinase activity:glutamate 5-kinase activity","chloroplast thylakoid:chloroplast stroma","ARATHwo_AT3G57560.1","encodes a N-acetylglutamate kinase, involved in arginine biosynthesis","sp|B0CAM3|ARGB_ACAM1","Acetylglutamate kinase","gi|168039296|ref|XP_001772134.1|",{"$nulls":4},{"v":1.22407782585317,"d":"1.22"},{"v":0.323330593260001,"d":"0.32"},{"v":0.540164268272483,"d":"0.54"},{"v":5.61716559023075,"d":"5.62"}]
["g84855.t1",{"$nulls":19},"X",null,"X"]
["g84856.t1",{"$nulls":20},"X","X"]
["g84857.t1"]
["g84858.t1",{"$nulls":15},{"v":0.12036116406546,"d":"0.12"},{"v":0.0535162955838173,"d":"0.05"},{"v":0.0426051067824243,"d":"0.04"},{"v":0.076163433380714,"d":"0.08"}]
["g84859.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0133813644187053,"d":"0.01"},{"v":0.028313750993083,"d":"0.03"}]
["g84860.t1",{"$nulls":6},"ARATHwo_AT5G65930.3","encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.","sp|P47808|MYSH_ACACA","High molecular weight form of myosin-1","gi|758345518|dbj|GAN11595.1|",{"$nulls":4},{"v":1.20228567070483,"d":"1.20"},{"v":1.42800098307581,"d":"1.43"},{"v":3.43654203256587,"d":"3.44"},{"v":0.132116343406807,"d":"0.13"}]
["g84861.t1"]
["g84862.t1"]
["g84863.t1",{"$nulls":10},"gi|758355110|dbj|GAN02878.1|",{"$nulls":4},{"v":0.283257618915261,"d":"0.28"},{"v":4.81989754630432,"d":"4.82"},{"v":36.0757137804433,"d":"36.08"},{"v":0.991901765614885,"d":"0.99"}]
["g84864.t2"]
["g84864.t1"]
["g84865.t1",{"$nulls":10},"gi|215448628|gb|EEB88753.1|",{"$nulls":4},{"v":0.022195086682727,"d":"0.02"},{"v":0.0298721740258048,"d":"0.03"},{"v":0.123883372418797,"d":"0.12"},{"v":0,"d":"0.00"},"X"]
["g84866.t1",{"$nulls":6},"ARATHwo_AT4G15880.1","EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.",null,null,"gi|642091176|emb|CDQ81808.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0665844919000757,"d":"0.07"},{"v":0,"d":"0.00"}]
["g84867.t1",{"$nulls":15},{"v":0.515467439361853,"d":"0.52"},{"v":0.470629393276023,"d":"0.47"},{"v":8.17728170691141,"d":"8.18"},{"v":0.88194645485346,"d":"0.88"}]
["g84868.t1",{"$nulls":15},{"v":14.6879398369097,"d":"14.69"},{"v":40.1043709801143,"d":"40.10"},{"v":37.4090091808129,"d":"37.41"},{"v":21.6397942828705,"d":"21.64"},null,"X","X"]
["g84869.t1",{"$nulls":6},"ARATHwo_AT5G53330.1","Ubiquitin-associated/translation elongation factor EF1B protein; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).",null,null,"gi|659074360|ref|XP_008437562.1|",null,null,"x","x",{"v":11.5161626847024,"d":"11.52"},{"v":10.2968117109019,"d":"10.30"},{"v":11.9764983119611,"d":"11.98"},{"v":2.29807886070806,"d":"2.30"}]
["g84870.t1","0090305:0016070:0001101:1901700:0006970:0010033","0003676:0004527",44424,"nucleic acid phosphodiester bond hydrolysis:RNA metabolic process:response to acid:response to oxygen-containing compound:response to osmotic stress:response to organic substance","nucleic acid binding:exonuclease activity","intracellular part","ARATHwo_AT3G25430.1","Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G55870.1); Has 339 Blast hits to 335 proteins in 120 species: Archae - 0; Bacteria - 10; Metazoa - 154; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).","sp|Q8W4C3|PARNL_ARATH","Poly(A)-specific ribonuclease PARN-like","gi|168026131|ref|XP_001765586.1|",{"$nulls":4},{"v":0.892076550239816,"d":"0.89"},{"v":2.3633390809347,"d":"2.36"},{"v":3.7174752788123,"d":"3.72"},{"v":2.94602250235168,"d":"2.95"}]
["g84871.t1",{"$nulls":15},{"v":0.216424227489826,"d":"0.22"},{"v":0.32614042784112,"d":"0.33"},{"v":2.08293839566384,"d":"2.08"},{"v":0.685368420023464,"d":"0.69"},"X",null,"X"]
["g84872.t1","0090304:0006950","0097159:0004518:1901363",null,"nucleic acid metabolic process:response to stress","organic cyclic compound binding:nuclease activity:heterocyclic compound binding",null,"ARATHwo_AT1G55870.1","Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA.","sp|Q9LG26|PARN_ARATH","Poly(A)-specific ribonuclease PARN","gi|590605426|ref|XP_007020484.1|",null,null,"x","x",{"v":2.83331479966385,"d":"2.83"},{"v":2.49471893472719,"d":"2.49"},{"v":6.06476648628604,"d":"6.06"},{"v":3.50419239237039,"d":"3.50"}]
["g84873.t1",{"$nulls":13},"x","x",{"v":0.922780064412459,"d":"0.92"},{"v":8.82502212623781,"d":"8.83"},{"v":5.65129857090594,"d":"5.65"},{"v":20.9503207963604,"d":"20.95"}]
["g84874.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",null,null,"gi|255549507|ref|XP_002515806.1|","x",{"$nulls":3},{"v":0.623479288729983,"d":"0.62"},{"v":0.772218425069215,"d":"0.77"},{"v":0.806852199732186,"d":"0.81"},{"v":0.973819254452946,"d":"0.97"}]
["g84875.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|768941267|ref|XP_011610502.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.270053770924404,"d":"0.27"},{"v":0,"d":"0.00"},"X"]
["g84876.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0676140727878677,"d":"0.07"},{"v":0,"d":"0.00"}]
["g84877.t1","0007224:0043010:0032880:0060563:0001944:0042384:0042733:0001701","0005515:0008158","0005813:0036064:0031514:0016020:0036038","smoothened signaling pathway:camera-type eye development:regulation of protein localization:neuroepithelial cell differentiation:vasculature development:cilium assembly:embryonic digit morphogenesis:in utero embryonic development","protein binding:hedgehog receptor activity","centrosome:cilium basal body:motile cilium:membrane:TCTN-B9D complex",null,null,"sp|Q503B7|B9D1_DANRE","B9 domain-containing protein 1","gi|255082550|ref|XP_002504261.1|",null,null,"x","x",{"v":0.368572190056931,"d":"0.37"},{"v":0.281047787835871,"d":"0.28"},{"v":25.7650547681045,"d":"25.77"},{"v":0,"d":"0.00"}]
["g84878.t1",{"$nulls":15},{"v":18.5739298027934,"d":"18.57"},{"v":34.7789836372006,"d":"34.78"},{"v":8.18912068449929,"d":"8.19"},{"v":0.586022940213806,"d":"0.59"}]
["g84879.t1",{"$nulls":13},"x","x",{"v":6.7088934115922,"d":"6.71"},{"v":23.0079756818685,"d":"23.01"},{"v":17.340289023982,"d":"17.34"},{"v":52.4835547084139,"d":"52.48"}]
["g84880.t1","0007264:0006913:0006886:0030163","0005524:0003924:0005525","0005737:0016020","small GTPase mediated signal transduction:nucleocytoplasmic transport:intracellular protein transport:protein catabolic process","ATP binding:GTPase activity:GTP binding","cytoplasm:membrane","ARATHwo_AT5G55190.1","A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.","sp|P41918|RANA1_TOBAC","GTP-binding nuclear protein Ran-A1","gi|168016376|ref|XP_001760725.1|",null,"x","x","x",{"v":331.560253368921,"d":"331.56"},{"v":443.81913645107,"d":"443.82"},{"v":325.185689183594,"d":"325.19"},{"v":277.381996815875,"d":"277.38"}]
["g84881.t1",null,46872,null,null,"metal ion binding",null,"ARATHwo_AT5G45290.2","RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT4G11680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q90972|RNF13_CHICK","E3 ubiquitin-protein ligase RNF13","gi|590680571|ref|XP_007040898.1|",{"$nulls":4},{"v":15.6085885310719,"d":"15.61"},{"v":11.2566492584701,"d":"11.26"},{"v":11.0542290425062,"d":"11.05"},{"v":6.23064108355275,"d":"6.23"}]
["g84882.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.109234415805238,"d":"0.11"},{"v":0.691569876617254,"d":"0.69"},{"v":0.119064107997762,"d":"0.12"}]
["g84883.t1"]
["g84884.t1"]
["g84885.t1",{"$nulls":6},"ARATHwo_AT2G33550.1","Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3","gi|116789822|gb|ABK25400.1|","x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0.0460774632822987,"d":"0.05"},{"v":0.106624419139598,"d":"0.11"},{"v":0,"d":"0.00"}]
["g84886.t1"]
["g84887.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|406701213|gb|EKD04365.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":0.252654563422857,"d":"0.25"},{"v":4.93222675486704,"d":"4.93"},{"v":0.831893053999687,"d":"0.83"},"X"]
["g84888.t1","0000413:0032787:0046148:0061077:0008299","0003755:0005528","0031977:0009507","protein peptidyl-prolyl isomerization:monocarboxylic acid metabolic process:pigment biosynthetic process:chaperone-mediated protein folding:isoprenoid biosynthetic process","peptidyl-prolyl cis-trans isomerase activity:FK506 binding","thylakoid lumen:chloroplast","ARATHwo_AT5G45680.1","Peptidyl-Prolyl Isomerase located in chloroplast thylakoid lumen","sp|Q9SCY2|FKB13_ARATH","Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic","gi|242096628|ref|XP_002438804.1|",null,"x","x","x",{"v":63.7407211105823,"d":"63.74"},{"v":3.24762183147124,"d":"3.25"},{"v":1.79473436573604,"d":"1.79"},{"v":0,"d":"0.00"}]
["g84889.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.1491422451953,"d":"0.15"},{"v":0.183091923965531,"d":"0.18"},{"v":0,"d":"0.00"}]
["g84890.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.180133996015593,"d":"0.18"},{"v":0.486220039498512,"d":"0.49"},{"v":0.0733306274207203,"d":"0.07"},"X",null,"X"]
["g84891.t1",{"$nulls":8},"sp|Q4R6I1|GIN1_MACFA","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0965956388755687,"d":"0.10"},{"v":0,"d":"0.00"},"X"]
["g84892.t1"]
["g84893.t1",{"$nulls":19},"X",null,"X"]
["g84894.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.0470386702062927,"d":"0.05"},{"v":0.167126995576522,"d":"0.17"},{"v":0,"d":"0.00"}]
["g84895.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|645233554|ref|XP_008223402.1|",{"$nulls":8},"X"]
["g84896.t1",{"$nulls":15},{"v":0.0547191082971485,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.314723455261357,"d":"0.31"},{"v":0,"d":"0.00"}]
["g84897.t1","0006355:0006486","0046872:0003677:0003700","0005737:0005634","regulation of transcription, DNA-dependent:protein glycosylation","metal ion binding:DNA binding:sequence-specific DNA binding transcription factor activity","cytoplasm:nucleus","ARATHwo_AT2G41900.1","CCCH-type zinc finger protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger protein with ARM repeat domain (TAIR:AT5G12850.1); Has 5399 Blast hits to 3519 proteins in 384 species: Archae - 10; Bacteria - 312; Metazoa - 2497; Fungi - 280; Plants - 489; Viruses - 8; Other Eukaryotes - 1803 (source: NCBI BLink).","sp|P93755|C3H30_ARATH","Zinc finger CCCH domain-containing protein 30","gi|695018818|ref|XP_009396384.1|",{"$nulls":4},{"v":3.6367834825439598,"d":"3.64"},{"v":8.43515874479141,"d":"8.44"},{"v":7.22407309010257,"d":"7.22"},{"v":2.54918872563863,"d":"2.55"}]
["g84898.t1",{"$nulls":13},"x","x",{"v":25.2073416649034,"d":"25.21"},{"v":18.8905403076308,"d":"18.89"},{"v":8.7953035455771,"d":"8.80"},{"v":3.57372590567854,"d":"3.57"}]
["g52744.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.16324582085363,"d":"1.16"},{"v":0.177799907636136,"d":"0.18"},"X",null,"X"]
["g52745.t1",{"$nulls":13},"x","x",{"v":0.100280894223585,"d":"0.10"},{"v":0.573504402390905,"d":"0.57"},{"v":0.185046920328726,"d":"0.19"},{"v":10.0868937031845,"d":"10.09"}]
["g52746.t1","0000226:0048568:0022402:0060562:0007368:0050794:0048598:0021915",null,"0005737:0005813","microtubule cytoskeleton organization:embryonic organ development:cell cycle process:epithelial tube morphogenesis:determination of left/right symmetry:regulation of cellular process:embryonic morphogenesis:neural tube development",null,"cytoplasm:centrosome",null,null,"sp|Q8JGS1|STIL_DANRE","SCL-interrupting locus protein homolog","gi|573894610|ref|XP_006635054.1|",null,null,"x","x",{"v":0.068089048279156,"d":"0.07"},{"v":0.882497726142336,"d":"0.88"},{"v":3.3475900945321,"d":"3.35"},{"v":0.92700255982843,"d":"0.93"}]
["g52747.t1",6281,"0008094:0005524:0003684",null,"DNA repair","DNA-dependent ATPase activity:ATP binding:damaged DNA binding",null,"ARATHwo_AT5G50340.1","ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases; FUNCTIONS IN: in 7 functions; INVOLVED IN: DNA repair, proteolysis, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), DNA repair protein RadA (InterPro:IPR004504), DNA helicase, DnaB-like, C-terminal (InterPro:IPR007694), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 8098 Blast hits to 8084 proteins in 2420 species: Archae - 172; Bacteria - 6133; Metazoa - 8; Fungi - 0; Plants - 82; Viruses - 9; Other Eukaryotes - 1694 (source: NCBI BLink).","sp|Q92F42|RADA_LISIN","DNA repair protein RadA homolog","gi|308814316|ref|XP_003084463.1|",null,null,"x","x",{"v":17.8720300570687,"d":"17.87"},{"v":5.45211405005589,"d":"5.45"},{"v":2.63601768390732,"d":"2.64"},{"v":6.27561764063415,"d":"6.28"}]
["g52748.t1",null,"0008270:0003676",null,null,"zinc ion binding:nucleic acid binding",null,"ARATHwo_AT1G65660.1","Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.","sp|Q9SHY8|SLU7A_ARATH","Pre-mRNA-splicing factor SLU7-A","gi|901796093|gb|KMZ58911.1|",{"$nulls":4},{"v":1.22873704910478,"d":"1.23"},{"v":0.210227202808709,"d":"0.21"},{"v":21.2104161874699,"d":"21.21"},{"v":0.121723066169772,"d":"0.12"}]
["g52749.t1",{"$nulls":10},"gi|401889065|gb|EJT53006.1|",{"$nulls":8},"X"]
["g52750.t1",{"$nulls":15},{"v":0.0628412778924557,"d":"0.06"},{"v":0,"d":"0.00"},{"v":10.5984474790302,"d":"10.60"},{"v":0.118804705083721,"d":"0.12"}]
["g52750.t2",{"$nulls":15},{"v":0.0628412778924557,"d":"0.06"},{"v":0,"d":"0.00"},{"v":10.5984474790302,"d":"10.60"},{"v":0.118804705083721,"d":"0.12"}]
["g53486.t1",{"$nulls":6},"ARATHwo_AT1G16030.1","heat shock protein 70B (Hsp70b); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: cytosol, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (TAIR:AT3G12580.1); Has 33913 Blast hits to 33562 proteins in 4835 species: Archae - 164; Bacteria - 16454; Metazoa - 3784; Fungi - 1785; Plants - 1262; Viruses - 309; Other Eukaryotes - 10155 (source: NCBI BLink).","sp|P16019|HSP70_THEAN","Heat shock 70 kDa protein","gi|731310842|ref|XP_010678398.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.438475450559355,"d":"0.44"},{"v":0,"d":"0.00"}]
["g53487.t1",{"$nulls":10},"gi|302816722|ref|XP_002990039.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.103419920027107,"d":"0.10"},{"v":0,"d":"0.00"}]
["g53488.t1",{"$nulls":10},"gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.033706513460582,"d":"0.03"},{"v":0.038957566811291,"d":"0.04"},{"v":0,"d":"0.00"},null,"X"]
["g53489.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|847115053|ref|XP_012815548.1|"]
["g53490.t1",{"$nulls":8},"sp|C4LGV8|DNAK_CORK4","Chaperone protein DnaK","gi|751676903|gb|KIM27079.1|",{"$nulls":4},{"v":0.12623465562031,"d":"0.13"},{"v":0.08286624872925,"d":"0.08"},{"v":0.125955492190107,"d":"0.13"},{"v":0,"d":"0.00"}]
["g53491.t1",{"$nulls":8},"sp|Q9L7Q2|ZMPB_STRPN","Zinc metalloprotease ZmpB",{"$nulls":9},"X"]
["g53492.t1",{"$nulls":15},{"v":0.0272553309084021,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.0644354168179883,"d":"0.06"},{"v":0.135808253024145,"d":"0.14"}]
["g79460.t1"]
["g53493.t1",6655,50200,null,"phosphatidylglycerol biosynthetic process","plasmalogen synthase activity",null,"ARATHwo_AT2G45670.1","calcineurin B subunit-related; FUNCTIONS IN: calcium ion binding, acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Phospholipid/glycerol acyltransferase (InterPro:IPR002123), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Phospholipid/glycerol acyltransferase family protein (TAIR:AT1G80950.1); Has 3507 Blast hits to 3479 proteins in 687 species: Archae - 0; Bacteria - 746; Metazoa - 1091; Fungi - 201; Plants - 987; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).","sp|Q8S8S2|LPCT2_ARATH","Lysophospholipid acyltransferase LPEAT2","gi|565344819|ref|XP_006339501.1|",null,null,"x","x",{"v":6.07588054990332,"d":"6.08"},{"v":4.92145066619278,"d":"4.92"},{"v":4.41178392520316,"d":"4.41"},{"v":1.96304236744669,"d":"1.96"}]
["g53494.t1",null,5488,null,null,"binding",null,"ARATHwo_AT5G47010.1","Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.","sp|Q54I89|RENT1_DICDI","Regulator of nonsense transcripts 1","gi|663514497|gb|AIF05006.1|",null,null,"x","x",{"v":5.85694452416902,"d":"5.86"},{"v":7.91038396966526,"d":"7.91"},{"v":4.97626425405454,"d":"4.98"},{"v":16.4858111411032,"d":"16.49"}]
["g53495.t1",{"$nulls":6},"ARATHwo_AT3G59040.2","Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q9LYT2|PP287_ARATH","Pentatricopeptide repeat-containing protein At3g59040","gi|168049795|ref|XP_001777347.1|",null,null,"x","x",{"v":15.797418937339,"d":"15.80"},{"v":8.82534734054815,"d":"8.83"},{"v":4.6825444925233,"d":"4.68"},{"v":3.99559054211943,"d":"4.00"}]
["g53496.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT5G13160.1","Mutant is defective in perception of Pseudomonas syringae avirulence gene avrPphB. Encodes a putative serine-threonine kinase.","sp|Q9FE20|PBS1_ARATH","Serine/threonine-protein kinase PBS1","gi|157101308|dbj|BAF79985.1|",null,null,"x","x",{"v":10.5896527785955,"d":"10.59"},{"v":6.76840366547386,"d":"6.77"},{"v":10.421534945897,"d":"10.42"},{"v":6.27154565452209,"d":"6.27"}]
["g53497.t1",{"$nulls":13},"x","x",{"v":0,"d":"0.00"},{"v":0.348086199397559,"d":"0.35"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X",null,"X"]
["g53498.t1","0044260:0007275:0006996:0048856:0007059:0022402:0044238",null,5694,"cellular macromolecule metabolic process:multicellular organismal development:organelle organization:anatomical structure development:chromosome segregation:cell cycle process:primary metabolic process",null,"chromosome","ARATHwo_AT4G31400.1","Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.","sp|Q5SPR8|ESCO2_DANRE","N-acetyltransferase ESCO2","gi|168021895|ref|XP_001763476.1|",null,null,"x","x",{"v":0.505899593448785,"d":"0.51"},{"v":1.66402006914616,"d":"1.66"},{"v":2.88578900373207,"d":"2.89"},{"v":15.41686066424,"d":"15.42"}]
["g53499.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.388610914508143,"d":"0.39"},{"v":0,"d":"0.00"}]
["g53500.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|297599295|ref|NP_001046945.2|"]
["g53501.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.15772800088112,"d":"0.16"},{"v":0,"d":"0.00"}]
["g53502.t1",{"$nulls":8},"sp|Q9P0U3|SENP1_HUMAN","Sentrin-specific protease 1","gi|658023311|ref|XP_008347065.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.13060199060068,"d":"0.13"},{"v":0.322446644020908,"d":"0.32"},{"v":0.172166384279938,"d":"0.17"}]
["g53503.t1","0007018:0008152","0003777:0005524","0030286:0005929","microtubule-based movement:metabolic process","microtubule motor activity:ATP binding","dynein complex:cilium",null,null,"sp|Q8WXX0|DYH7_HUMAN","Dynein heavy chain 7, axonemal","gi|302835046|ref|XP_002949085.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":6.8238009243124,"d":"6.82"},{"v":0,"d":"0.00"}]
["g53504.t1",{"$nulls":15},{"v":0.161190838087641,"d":"0.16"},{"v":0.210768572542537,"d":"0.21"},{"v":0.205971569957532,"d":"0.21"},{"v":0,"d":"0.00"}]
["g53505.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0.0166306407118929,"d":"0.02"},{"v":0.292044270122769,"d":"0.29"},{"v":0.790075335016874,"d":"0.79"},{"v":0.367398893828751,"d":"0.37"},"X"]
["g53506.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.537178744167657,"d":"0.54"},{"v":0,"d":"0.00"},"X",null,"X"]
["g53507.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.438808498990328,"d":"0.44"},{"v":0,"d":"0.00"}]
["g53508.t1","0006073:0044249:1901576:0044763:0044711",16740,9536,"cellular glucan metabolic process:cellular biosynthetic process:organic substance biosynthetic process:single-organism cellular process:single-organism biosynthetic process","transferase activity","plastid","ARATHwo_AT4G18240.1","starch synthase 4 (SS4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 3 (TAIR:AT1G11720.1); Has 55451 Blast hits to 38117 proteins in 4040 species: Archae - 1014; Bacteria - 10985; Metazoa - 22418; Fungi - 3875; Plants - 6050; Viruses - 242; Other Eukaryotes - 10867 (source: NCBI BLink).","sp|Q0WVX5|SSY4_ARATH","Probable starch synthase 4, chloroplastic/amyloplastic","gi|823237418|ref|XP_012451361.1|",null,null,"x","x",{"v":2.4255067230086,"d":"2.43"},{"v":7.70866332104525,"d":"7.71"},{"v":5.40205497638691,"d":"5.40"},{"v":3.09983820729194,"d":"3.10"}]
["g53509.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|242064624|ref|XP_002453601.1|"]
["g79487.t1",{"$nulls":19},"X",null,"X"]
["g53510.t1"]
["g53511.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.417263001860691,"d":"0.42"},{"v":0,"d":"0.00"}]
["g53512.t1",{"$nulls":8},"sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|743944356|ref|XP_011016699.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0686460824951633,"d":"0.07"},{"v":0,"d":"0.00"},null,"X"]
["g53513.t1",{"$nulls":15},{"v":24.7023655302258,"d":"24.70"},{"v":0,"d":"0.00"},{"v":0.107404074002172,"d":"0.11"},{"v":12.1340775799309,"d":"12.13"}]
["g53514.t1"]
["g53515.t1"]
["g53516.t1",{"$nulls":15},{"v":0.0549452745200331,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.228329812971702,"d":"0.23"}]
["g53517.t1",{"$nulls":13},"x","x",{"v":14.3542112484563,"d":"14.35"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":5.22514585709439,"d":"5.23"}]
["g53518.t1",{"$nulls":8},"sp|A0JP43|EFCB5_MOUSE","EF-hand calcium-binding domain-containing protein 5",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.384904577280713,"d":"0.38"}]
["g79494.t1","0044249:1901576:0019760:0019682:0044262:0044711:0044723",null,9536,"cellular biosynthetic process:organic substance biosynthetic process:glucosinolate metabolic process:glyceraldehyde-3-phosphate metabolic process:cellular carbohydrate metabolic process:single-organism biosynthetic process:single-organism carbohydrate metabolic process",null,"plastid","ARATHwo_AT4G35760.1","Encodes a bimodular enzyme comprising an integral domain homologous to the catalytic subunit of mammalian vitamin K epoxide reductase (VKORC1, EC 1.1.4.1) that is fused to a soluble thioredoxin-like moiety. Using yeast microsomes as a recombinant system, it was shown that the VKORC1 domain of At4g35760 functions as a stringent naphthoquinone reductase, and that its reduced Trx-like partner can serve as its electron donor. Located in plastid. Required for the assembly of photosystem II. Can catalyze disulfide bond formation in vitro.","sp|Q8L540|LTO1_ARATH","Thiol-disulfide oxidoreductase LTO1","gi|116787288|gb|ABK24448.1|",null,null,"x","x",{"v":7.52140237537743,"d":"7.52"},{"v":1.53611757855005,"d":"1.54"},{"v":0.831190215959289,"d":"0.83"},{"v":1.21077765070803,"d":"1.21"}]
["g53519.t1",{"$nulls":6},"ARATHwo_AT5G60150.1","unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",{"$nulls":7},{"v":0,"d":"0.00"},{"v":0.036034724185646,"d":"0.04"},{"v":2.33921070641659,"d":"2.34"},{"v":0,"d":"0.00"},null,"X"]
["g53520.t1","0003341:0008152","0016887:0005524:0003777",5858,"cilium movement:metabolic process","ATPase activity:ATP binding:microtubule motor activity","axonemal dynein complex",null,null,"sp|Q63164|DYH1_RAT","Dynein heavy chain 1, axonemal","gi|302767166|ref|XP_002967003.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.101338570872983,"d":"0.10"},{"v":12.0807166388964,"d":"12.08"},{"v":0,"d":"0.00"}]
["g53521.t1",{"$nulls":8},"sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab",{"$nulls":5},{"v":0,"d":"0.00"},{"v":0.0250982696444975,"d":"0.03"},{"v":0.261281017696161,"d":"0.26"},{"v":0,"d":"0.00"}]
["g53522.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":2.59959710297219,"d":"2.60"},{"v":0,"d":"0.00"}]
["g53523.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|658032340|ref|XP_008351676.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0599355406092253,"d":"0.06"},{"v":0.300660941001984,"d":"0.30"},{"v":0,"d":"0.00"},"X"]
["g53524.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|702385756|ref|XP_010064603.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0214708377731042,"d":"0.02"},{"v":0.0552938914428012,"d":"0.06"},{"v":0.0303225635079734,"d":"0.03"},null,"X"]
["g53525.t1",{"$nulls":6},"ARATHwo_AT1G61190.1","Putative CC-NB-LRR resistance gene. It's ortholog in ecotype Wei-0 RPP39 (R_190-Wei-0, accession number JQ045573, PMID:22359513) has been shown experimentally to recognize the effector ATR39-1 produced by Hyaloperonospora arabidopsidis (Hpa).","sp|O22727|DRL16_ARATH","Probable disease resistance protein At1g61190","gi|571498874|ref|XP_003541555.2|",{"$nulls":4},{"v":0.0699400203498999,"d":"0.07"},{"v":0.0399089049877583,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.212218313548828,"d":"0.21"}]
["g53526.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|38344156|emb|CAD41876.2|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.079289741720833,"d":"0.08"},{"v":0.0461711357834163,"d":"0.05"},"X"]
["g53527.t1",{"$nulls":6},"ARATHwo_AT1G62935.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).","sp|P0C6U3|R1A_CVHN1","Replicase polyprotein 1a"]
["g53528.t1"]
["g53529.t1",{"$nulls":19},"X",null,"X"]
["g53530.t1",{"$nulls":6},"ARATHwo_AT5G10320.1","unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).",null,null,"gi|727640747|ref|XP_010491698.1|",null,null,"x","x",{"v":20.3860378615329,"d":"20.39"},{"v":2.40543783338976,"d":"2.41"},{"v":5.02589748527874,"d":"5.03"},{"v":0,"d":"0.00"}]
["g79512.t1"]
["g53531.t1",{"$nulls":6},"ARATHwo_AT3G56230.1","BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G01640.2); Has 5225 Blast hits to 5141 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 3910; Fungi - 3; Plants - 1048; Viruses - 41; Other Eukaryotes - 223 (source: NCBI BLink).",{"$nulls":5},"x","x",{"v":0,"d":"0.00"},{"v":0.0408135165883003,"d":"0.04"},{"v":1.65276663067434,"d":"1.65"},{"v":0,"d":"0.00"}]
["g53532.t1",{"$nulls":8},"sp|P05896|POL_SIVM1","Gag-Pol polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0528012420387998,"d":"0.05"},{"v":0.27107929237606,"d":"0.27"},{"v":0,"d":"0.00"},null,"X"]
["g53533.t1",{"$nulls":8},"sp|Q86TG7|PEG10_HUMAN","Retrotransposon-derived protein PEG10","gi|923854260|ref|XP_013704502.1|",{"$nulls":4},{"v":0.0499624897411812,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.199748100209379,"d":"0.20"},{"v":0.109847824226557,"d":"0.11"},"X"]
["g53534.t1",{"$nulls":6},"ARATHwo_AT1G52360.2","Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3).","sp|Q9C827|COB22_ARATH","Coatomer subunit beta'-2","gi|158297839|ref|XP_318012.4|",null,null,"x","x",{"v":50.1921278084348,"d":"50.19"},{"v":12.6087102012562,"d":"12.61"},{"v":14.8449126290191,"d":"14.84"},{"v":4.09510550034478,"d":"4.10"}]
["g53535.t1",{"$nulls":13},"x","x",{"v":0.0767503479950146,"d":"0.08"},{"v":0.63801173712659,"d":"0.64"},{"v":0.242423684376373,"d":"0.24"},{"v":37.0591213839769,"d":"37.06"},"X",null,"X"]
["g53536.t1",{"$nulls":8},"sp|Q6PUR6|GPN2_DANRE","GPN-loop GTPase 2"]
["g53537.t1",32880,3824,null,"regulation of protein localization","catalytic activity",{"$nulls":3},"sp|Q8WP32|SENP5_MACFA","Sentrin-specific protease 5","gi|399138607|gb|AFP23393.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.204679804013114,"d":"0.20"},{"v":0,"d":"0.00"}]
["g79514.t1",{"$nulls":19},"X",null,"X"]
["g53538.t1",{"$nulls":6},"ARATHwo_AT5G45180.1","Flavin-binding monooxygenase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-dependent monooxygenase 1 (TAIR:AT1G19250.1); Has 7331 Blast hits to 7212 proteins in 844 species: Archae - 6; Bacteria - 3308; Metazoa - 739; Fungi - 1235; Plants - 732; Viruses - 0; Other Eukaryotes - 1311 (source: NCBI BLink).","sp|Q9FKE7|FMO2_ARATH","Putative flavin-containing monooxygenase 2","gi|495132624|ref|WP_007857435.1|",{"$nulls":4},{"v":2.31915744069476,"d":"2.32"},{"v":1.7609223479475,"d":"1.76"},{"v":2.27297059848692,"d":"2.27"},{"v":0.630626088631576,"d":"0.63"}]
["g53539.t1",null,null,9536,null,null,"plastid","ARATHwo_AT5G62140.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).",null,null,"gi|224285976|gb|ACN40700.1|",null,null,"x","x",{"v":17.0118196874569,"d":"17.01"},{"v":13.0844247412665,"d":"13.08"},{"v":8.4768231846486,"d":"8.48"},{"v":5.56903308330084,"d":"5.57"}]
["g53540.t1",{"$nulls":6},"ARATHwo_AT4G15880.1","EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development.","sp|Q9EQE1|SENP2_RAT","Sentrin-specific protease 2","gi|298707296|emb|CBJ25923.1|",{"$nulls":4},{"v":0.0536711660873399,"d":"0.05"},{"v":0.0181387819616292,"d":"0.02"},{"v":0.110245161714672,"d":"0.11"},{"v":0.0336084244119317,"d":"0.03"}]
["g53541.t1"]
["g53542.t1","0044260:0006222","0004152:0005488","0016020:0005739","cellular macromolecule metabolic process:UMP biosynthetic process","dihydroorotate dehydrogenase activity:binding","membrane:mitochondrion","ARATHwo_AT5G23300.1","dihydroorotate dehydrogenase, catalyses fourth step of pyrimidine biosynthesis","sp|Q7XKC8|PYRD_ORYSJ","Dihydroorotate dehydrogenase (quinone), mitochondrial","gi|168010221|ref|XP_001757803.1|",null,null,"x","x",{"v":1.73226248844221,"d":"1.73"},{"v":1.33282651409521,"d":"1.33"},{"v":1.27298177002995,"d":"1.27"},{"v":14.1611862641768,"d":"14.16"}]
["g53543.t1",{"$nulls":6},"ARATHwo_AT3G13235.1","ubiquitin family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase aspartic (InterPro:IPR021109), Ubiquitin subgroup (InterPro:IPR019956), Peptidase aspartic, eukaryotic predicted (InterPro:IPR019103), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Peptidase A2A, retrovirus, catalytic (InterPro:IPR001995), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); Has 8885 Blast hits to 4319 proteins in 604 species: Archae - 0; Bacteria - 8; Metazoa - 3791; Fungi - 1215; Plants - 2329; Viruses - 83; Other Eukaryotes - 1459 (source: NCBI BLink).","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0630215693350362,"d":"0.06"},{"v":0,"d":"0.00"},"X"]
["g53544.t1",{"$nulls":8},"sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0172298716180401,"d":"0.02"},{"v":0.0766420608535686,"d":"0.08"},{"v":0.118847448798406,"d":"0.12"},{"v":0,"d":"0.00"},"X"]
["g88524.t1",{"$nulls":10},"gi|195357340|ref|XP_002045008.1|",{"$nulls":4},{"v":0.480216609288409,"d":"0.48"},{"v":1.20186123586088,"d":"1.20"},{"v":4.03102951541689,"d":"4.03"},{"v":1.71467224567517,"d":"1.71"},"X"]
["g88525.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.424359684868119,"d":"0.42"},{"v":1.23006612910072,"d":"1.23"},{"v":0,"d":"0.00"},"X"]
["g88526.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",null,"ARATHwo_AT5G26150.1","protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT5G12000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|661175528|emb|CDH61236.1|",{"$nulls":9},"X"]
["g88527.t1",{"$nulls":10},"gi|909128050|gb|KNE55208.1|",{"$nulls":4},{"v":0.0339345018096754,"d":"0.03"},{"v":1.5757937167699,"d":"1.58"},{"v":7.01546432665503,"d":"7.02"},{"v":4.95883294156669,"d":"4.96"},null,"X"]
["g88528.t1","0044238:0043170",5488,null,"primary metabolic process:macromolecule metabolic process","binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|77551348|gb|ABA94145.1|",{"$nulls":4},{"v":0.0929158921649099,"d":"0.09"},{"v":0.543247911410946,"d":"0.54"},{"v":1.37465749006382,"d":"1.37"},{"v":0.317883458900296,"d":"0.32"},null,"X"]
["g88529.t1",{"$nulls":6},"ARATHwo_AT2G23770.1","protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Immunoglobulin-like (InterPro:IPR007110), Protein kinase, catalytic domain (InterPro:IPR000719), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G33580.1); Has 93408 Blast hits to 92552 proteins in 3130 species: Archae - 75; Bacteria - 9623; Metazoa - 34895; Fungi - 6839; Plants - 28747; Viruses - 328; Other Eukaryotes - 12901 (source: NCBI BLink).","sp|Q8C6K9|CO6A6_MOUSE","Collagen alpha-6(VI) chain","gi|861610209|gb|KMQ85083.1|",{"$nulls":4},{"v":2.1432960751878,"d":"2.14"},{"v":3.7973304641699,"d":"3.80"},{"v":3.84493644164547,"d":"3.84"},{"v":6.78629016116477,"d":"6.79"},null,"X"]
["g88530.t1",{"$nulls":8},"sp|Q9P2P1|NYNRI_HUMAN","Protein NYNRIN","gi|595484032|gb|EXX71174.1|",{"$nulls":8},"X"]
["g88531.t1",{"$nulls":8},"sp|Q66H30|GIN1_RAT","Gypsy retrotransposon integrase-like protein 1","gi|50300512|gb|AAT73655.1|",{"$nulls":4},{"v":0.0631681542235072,"d":"0.06"},{"v":0.24314368164289,"d":"0.24"},{"v":1.05157850987498,"d":"1.05"},{"v":0.491428914444121,"d":"0.49"},"X"]
["g88532.t1",{"$nulls":12},"x","x","x",{"v":15.6973384976784,"d":"15.70"},{"v":13.0376252935655,"d":"13.04"},{"v":19.9368020165737,"d":"19.94"},{"v":6.54240273610576,"d":"6.54"}]
["g88533.t1"]
["g88534.t1","0006412:0045036",3735,"0005840:0009941:0009579:0009570","translation:protein targeting to chloroplast","structural constituent of ribosome","ribosome:chloroplast envelope:thylakoid:chloroplast stroma","ARATHwo_AT1G78630.1","embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).","sp|Q9SYL9|RK13_ARATH","50S ribosomal protein L13, chloroplastic","gi|168037358|ref|XP_001771171.1|",null,"x","x","x",{"v":113.922031732435,"d":"113.92"},{"v":64.6687487503719,"d":"64.67"},{"v":14.9050241818585,"d":"14.91"},{"v":5.36348358532319,"d":"5.36"}]
["g88535.t1",{"$nulls":19},"X",null,"X"]
["g88536.t1",{"$nulls":10},"gi|168063492|ref|XP_001783705.1|",{"$nulls":9},"X"]
["g88537.t1",{"$nulls":8},"sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":0.0265795906121179,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.374767468658323,"d":"0.37"},{"v":0,"d":"0.00"},"X"]
["g88538.t1",{"$nulls":10},"gi|302817969|ref|XP_002990659.1|",{"$nulls":4},{"v":6.85784617934958,"d":"6.86"},{"v":8.64196400768971,"d":"8.64"},{"v":17.3396366612535,"d":"17.34"},{"v":10.097831528798,"d":"10.10"}]
["g88539.t1",null,5488,null,null,"binding",null,"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).","sp|O75132|ZBED4_HUMAN","Zinc finger BED domain-containing protein 4","gi|731417170|ref|XP_010660195.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.165755511066641,"d":"0.17"},{"v":1.5461802451575,"d":"1.55"},{"v":0.105291538718166,"d":"0.11"}]
["g88540.t1",{"$nulls":6},"ARATHwo_AT4G10710.1","encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.","sp|Q7X923|SPT16_ORYSJ","FACT complex subunit SPT16","gi|743856214|ref|XP_010941792.1|",null,null,"x","x"]
["g88541.t1"]
["g88542.t1",{"$nulls":19},"X",null,"X"]
["g88543.t1"]
["g88544.t1",{"$nulls":6},"ARATHwo_AT2G40430.2","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687), Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has 706 Blast hits to 639 proteins in 197 species: Archae - 0; Bacteria - 32; Metazoa - 228; Fungi - 147; Plants - 47; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).","sp|O22892|GSR2_ARATH","Uncharacterized protein At2g40430","gi|116788333|gb|ABK24839.1|",null,"x","x","x",{"v":33.0482078084612,"d":"33.05"},{"v":30.6778414835195,"d":"30.68"},{"v":21.2377883647667,"d":"21.24"},{"v":44.7595443825468,"d":"44.76"}]
["g88545.t1",{"$nulls":19},"X",null,"X"]
["g88546.t1","0007018:0000281:0008152","0003777:0008017:0005524","0005874:0005871:0009524","microtubule-based movement:mitotic cytokinesis:metabolic process","microtubule motor activity:microtubule binding:ATP binding","microtubule:kinesin complex:phragmoplast","ARATHwo_AT3G19050.1","PHRAGMOPLAST ORIENTING KINESIN 2 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK2 constructs were broader than those for POK1; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.","sp|Q27IK6|POK2_ARATH","Phragmoplast orienting kinesin 2","gi|567860852|ref|XP_006423080.1|",null,null,"x","x",{"v":0.239410901309458,"d":"0.24"},{"v":3.54950394979467,"d":"3.55"},{"v":15.5735352901897,"d":"15.57"},{"v":4.54763092471141,"d":"4.55"}]
["g88547.t1"]
["g88548.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0763573055170367,"d":"0.08"},{"v":0,"d":"0.00"},"X",null,"X"]
["g88549.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.255818689147634,"d":"0.26"},{"v":0,"d":"0.00"}]
["g88550.t1",8152,3824,null,"metabolic process","catalytic activity",{"$nulls":5},"gi|71666350|ref|XP_820135.1|",{"$nulls":4},{"v":2.67495544350441,"d":"2.67"},{"v":5.82532289993775,"d":"5.83"},{"v":7.0241915944498,"d":"7.02"},{"v":4.08457554024835,"d":"4.08"}]
["g88551.t1",{"$nulls":6},"ARATHwo_AT5G48970.1","Encodes a mitochondrial thiamin diphosphate carrier.","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|659068885|ref|XP_008446938.1|",{"$nulls":9},"X"]
["g88552.t1",{"$nulls":15},{"v":1.08392845937794,"d":"1.08"},{"v":7.84934408526792,"d":"7.85"},{"v":13.8283496985044,"d":"13.83"},{"v":4.53367982527575,"d":"4.53"},null,"X","X"]
["g88553.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|147785808|emb|CAN62127.1|"]
["g88554.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.216587746184316,"d":"0.22"},{"v":0.086533565231856,"d":"0.09"},"X",null,"X"]
["g88555.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.357314715172597,"d":"0.36"},{"v":0,"d":"0.00"},"X",null,"X"]
["g88556.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.099648460148647,"d":"0.10"},{"v":0.09548583825847,"d":"0.10"},"X"]
["g88557.t1","0006782:0015995:0055114",4729,"0009941:0009534","protoporphyrinogen IX biosynthetic process:chlorophyll biosynthetic process:oxidation-reduction process","oxygen-dependent protoporphyrinogen oxidase activity","chloroplast envelope:chloroplast thylakoid","ARATHwo_AT4G01690.1","Encodes protoporphyrinogen oxidase (PPOX).","sp|P55826|PPOC_ARATH","Protoporphyrinogen oxidase 1, chloroplastic","gi|302787112|ref|XP_002975326.1|",null,"x","x","x",{"v":27.7284540235934,"d":"27.73"},{"v":50.3849253384855,"d":"50.38"},{"v":21.9246222486876,"d":"21.92"},{"v":58.2838858351076,"d":"58.28"}]
["g88558.t1",{"$nulls":15},{"v":0.42447396789124,"d":"0.42"},{"v":0.342872844658634,"d":"0.34"},{"v":1.62408877809678,"d":"1.62"},{"v":0.582047258588558,"d":"0.58"},"X",null,"X"]
["g88559.t1","0006782:0015995:0055114",4729,"0009941:0009534","protoporphyrinogen IX biosynthetic process:chlorophyll biosynthetic process:oxidation-reduction process","oxygen-dependent protoporphyrinogen oxidase activity","chloroplast envelope:chloroplast thylakoid",{"$nulls":4},"gi|168009884|ref|XP_001757635.1|",{"$nulls":9},"X"]
["g88560.t1",6633,16491,"0009941:0009528","fatty acid biosynthetic process","oxidoreductase activity","chloroplast envelope:plastid inner membrane","ARATHwo_AT3G11170.1","Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.","sp|P46310|FAD3C_ARATH","Omega-3 fatty acid desaturase, chloroplastic","gi|168024271|ref|XP_001764660.1|",null,null,"x","x",{"v":29.846150885274,"d":"29.85"},{"v":28.5399586402553,"d":"28.54"},{"v":10.9460796721167,"d":"10.95"},{"v":0.327010944093321,"d":"0.33"}]
["g88561.t1",null,5488,null,null,"binding",null,"ARATHwo_AT1G76860.1","Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G21190.1); Has 1289 Blast hits to 1289 proteins in 302 species: Archae - 306; Bacteria - 0; Metazoa - 397; Fungi - 221; Plants - 178; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).","sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|729453080|ref|XP_010523613.1|",{"$nulls":4},{"v":8.15275620980584,"d":"8.15"},{"v":14.4951580091983,"d":"14.50"},{"v":6.65610542961331,"d":"6.66"},{"v":28.668530403231,"d":"28.67"},null,"X"]
["g88562.t1"]
["g88563.t1",{"$nulls":6},"ARATHwo_AT4G20520.1","RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|780141797|ref|XP_011680762.1|",{"$nulls":4},{"v":0.34246110627035,"d":"0.34"},{"v":1.9549289458143,"d":"1.95"},{"v":8.32393238574647,"d":"8.32"},{"v":1.82723106136154,"d":"1.83"},null,"X"]
["g88564.t1",null,5488,null,null,"binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|590649404|ref|XP_007032400.1|",{"$nulls":4},{"v":19.1306143690747,"d":"19.13"},{"v":7.75813841348439,"d":"7.76"},{"v":4.75168715364625,"d":"4.75"},{"v":18.0125018764297,"d":"18.01"},null,"X"]
["g88565.t1",{"$nulls":6},"ARATHwo_AT4G08320.2","Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.","sp|Q80W98|SGTB_RAT","Small glutamine-rich tetratricopeptide repeat-containing protein beta","gi|302781630|ref|XP_002972589.1|",null,null,"x","x",{"v":17.7764391622824,"d":"17.78"},{"v":19.1432168089907,"d":"19.14"},{"v":26.5748899254168,"d":"26.57"},{"v":22.6682843619527,"d":"22.67"}]
["g88566.t1",{"$nulls":10},"gi|290984946|ref|XP_002675187.1|",null,"x","x","x",{"v":9.3307548541676,"d":"9.33"},{"v":13.5673899915141,"d":"13.57"},{"v":11.8069826396337,"d":"11.81"},{"v":22.5445953091279,"d":"22.54"}]
["g88567.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":1.98581404947423,"d":"1.99"},{"v":0,"d":"0.00"}]
["g88568.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.105628778100572,"d":"0.11"},{"v":0.651728412879546,"d":"0.65"},{"v":0.104970810115677,"d":"0.10"},"X",null,"X"]
["g88569.t1",{"$nulls":12},"x","x","x",{"v":33.7714254093268,"d":"33.77"},{"v":93.3350900747564,"d":"93.34"},{"v":72.4419869318189,"d":"72.44"},{"v":2.20874264458644,"d":"2.21"}]
["g88570.t2"]
["g88570.t1"]
["g88571.t1",{"$nulls":8},"sp|P26809|POL_MLVFF","Pol polyprotein","gi|657997735|ref|XP_008391257.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0462225785763687,"d":"0.05"},{"v":0.112849013874522,"d":"0.11"},{"v":0.226826713960302,"d":"0.23"},"X"]
["g88572.t1","0044763:0044710:0044260:0090304:0051716",null,null,"single-organism cellular process:single-organism metabolic process:cellular macromolecule metabolic process:nucleic acid metabolic process:cellular response to stimulus",null,null,"ARATHwo_AT5G15920.1","Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.","sp|Q9LFS8|SMC5_ARATH","Structural maintenance of chromosomes protein 5","gi|449436331|ref|XP_004135946.1|",{"$nulls":4},{"v":1.18349925966686,"d":"1.18"},{"v":5.394071079264,"d":"5.39"},{"v":6.27480605419068,"d":"6.27"},{"v":4.36738178599067,"d":"4.37"},null,"X"]
["g88573.t1",45490,"0046872:0030570",null,"pectin catabolic process","metal ion binding:pectate lyase activity",null,"ARATHwo_AT3G55140.1","Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G09540.1); Has 1866 Blast hits to 1858 proteins in 295 species: Archae - 2; Bacteria - 979; Metazoa - 0; Fungi - 175; Plants - 677; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).","sp|Q9FM66|PLY21_ARATH","Putative pectate lyase 21","gi|902209182|gb|KNA16128.1|",null,null,"x","x",{"v":12.2643091424778,"d":"12.26"},{"v":12.6956051609558,"d":"12.70"},{"v":10.8389176080131,"d":"10.84"},{"v":16.5282030475281,"d":"16.53"}]
["g88574.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|O92815|POL_WDSV","Gag-Pol polyprotein","gi|242826075|ref|XP_002488568.1|",{"$nulls":4},{"v":0.020825152673529,"d":"0.02"},{"v":0,"d":"0.00"},{"v":0.223067595717829,"d":"0.22"},{"v":0.104025677648965,"d":"0.10"},null,"X"]
["g88575.t1",{"$nulls":8},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|923749700|ref|XP_013673944.1|",{"$nulls":9},"X"]
["g88576.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.435323784357957,"d":"0.44"},{"v":0.758580282469506,"d":"0.76"},{"v":1.84005334035861,"d":"1.84"}]
["g88577.t1",{"$nulls":6},"ARATHwo_AT1G35720.1","Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, β-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress. Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion.","sp|P27216|ANX13_HUMAN","Annexin A13","gi|514686294|ref|XP_004990725.1|",null,null,"x","x",{"v":1.13487829504887,"d":"1.13"},{"v":35.534009726988,"d":"35.53"},{"v":0.941447503924249,"d":"0.94"},{"v":463.937144136662,"d":"463.94"}]
["g88578.t1"]
["g88579.t1",32259,16740,null,"methylation","transferase activity",null,"ARATHwo_AT3G49601.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q9UQ35|SRRM2_HUMAN","Serine/arginine repetitive matrix protein 2","gi|255550852|ref|XP_002516474.1|",{"$nulls":4},{"v":9.17378850914139,"d":"9.17"},{"v":10.911357860199,"d":"10.91"},{"v":14.5535609617766,"d":"14.55"},{"v":29.6665964799144,"d":"29.67"}]
["g88580.t1",{"$nulls":15},{"v":0.245214520916511,"d":"0.25"},{"v":0.125709381168999,"d":"0.13"},{"v":0.422429528126594,"d":"0.42"},{"v":0.374757305412367,"d":"0.37"},null,"X","X"]
["g88581.t1",16310,4672,16020,"phosphorylation","protein kinase activity","membrane","ARATHwo_AT3G58690.1","Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink).","sp|Q9LQQ8|RLCK7_ARATH","Probable serine/threonine-protein kinase RLCKVII","gi|157101304|dbj|BAF79983.1|",null,null,"x","x",{"v":5.69223995069288,"d":"5.69"},{"v":6.2436658111127,"d":"6.24"},{"v":3.36670722324984,"d":"3.37"},{"v":0.0323770737841192,"d":"0.03"}]
["g53545.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|121501699|gb|ABM55240.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.172898890810361,"d":"0.17"},{"v":0,"d":"0.00"},"X"]
["g53546.t1",{"$nulls":6},"ARATHwo_AT3G19170.1","Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers","sp|Q9LJL3|PREP1_ARATH","Presequence protease 1, chloroplastic/mitochondrial","gi|655141582|ref|WP_028588391.1|",{"$nulls":4},{"v":1.65719726054046,"d":"1.66"},{"v":0.125674860060002,"d":"0.13"},{"v":0.622663651396976,"d":"0.62"},{"v":0,"d":"0.00"}]
["g53547.t1",{"$nulls":6},"ARATHwo_AT3G18570.1","Oleosin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid storage; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: Oleosin family protein (TAIR:AT1G48990.1); Has 346 Blast hits to 346 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 346; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","sp|Q96543|OLE16_BROSE","Oleosin 16 kDa",{"$nulls":3},"x","x",{"v":1.88328137556583,"d":"1.88"},{"v":67.9182624698187,"d":"67.92"},{"v":2.32906668296345,"d":"2.33"},{"v":877.024666781367,"d":"877.02"}]
["g53548.t1",{"$nulls":8},"sp|Q6FUI7|CYM1_CANGA","Mitochondrial presequence protease","gi|612398871|ref|XP_007514955.1|",null,null,"x","x",{"v":4.46659661326487,"d":"4.47"},{"v":0.340740020859325,"d":"0.34"},{"v":0.83478275262986,"d":"0.83"},{"v":0,"d":"0.00"}]
["g53549.t1","0009651:0006099:0000023:0019252:0006094:0019761:0006096:0009098","0003861:0046872:0051539:0003994:0050486",9570,"response to salt stress:tricarboxylic acid cycle:maltose metabolic process:starch biosynthetic process:gluconeogenesis:glucosinolate biosynthetic process:glycolysis:leucine biosynthetic process","3-isopropylmalate dehydratase activity:metal ion binding:4 iron, 4 sulfur cluster binding:aconitate hydratase activity:intramolecular transferase activity, transferring hydroxy groups","chloroplast stroma","ARATHwo_AT4G13430.1","Encodes a methylthioalkylmalate isomerase involved in glucosinolate biosynthesis.","sp|Q94AR8|LEUC_ARATH","3-isopropylmalate dehydratase large subunit","gi|168050793|ref|XP_001777842.1|",null,"x","x","x",{"v":122.808671974345,"d":"122.81"},{"v":77.0208058032229,"d":"77.02"},{"v":46.7827639145289,"d":"46.78"},{"v":52.9340804158196,"d":"52.93"}]
["g53550.t1",{"$nulls":6},"ARATHwo_AT3G48425.1","DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein (TAIR:AT2G41460.1); Has 5913 Blast hits to 5912 proteins in 1998 species: Archae - 119; Bacteria - 3923; Metazoa - 218; Fungi - 82; Plants - 109; Viruses - 0; Other Eukaryotes - 1462 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein",{"$nulls":5},{"v":65.7447198887675,"d":"65.74"},{"v":10.2457066657659,"d":"10.25"},{"v":7.10586755290432,"d":"7.11"},{"v":11.3012294922252,"d":"11.30"}]
["g53551.t1",{"$nulls":6},"ARATHwo_AT2G39340.1","SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|Q32NW2|LENG8_XENLA","Leukocyte receptor cluster member 8 homolog","gi|593591308|ref|XP_007142685.1|",null,null,"x","x",{"v":11.0540951371234,"d":"11.05"},{"v":10.5781446824851,"d":"10.58"},{"v":19.5587409722208,"d":"19.56"},{"v":9.27581992559677,"d":"9.28"}]
["g53552.t1",16310,4672,5829,"phosphorylation","protein kinase activity","cytosol","ARATHwo_AT5G57610.1","Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G16270.2); Has 119780 Blast hits to 118332 proteins in 4796 species: Archae - 124; Bacteria - 12838; Metazoa - 46034; Fungi - 10270; Plants - 32306; Viruses - 451; Other Eukaryotes - 17757 (source: NCBI BLink).","sp|Q54H45|DRKB_DICDI","Probable serine/threonine-protein kinase drkB","gi|729349681|ref|XP_010542980.1|",{"$nulls":4},{"v":4.45971392793398,"d":"4.46"},{"v":4.08921384947471,"d":"4.09"},{"v":6.3249533817026,"d":"6.32"},{"v":4.51283170971326,"d":"4.51"}]
["g53552.t2",16310,4672,5829,"phosphorylation","protein kinase activity","cytosol","ARATHwo_AT1G16270.1","Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G79570.1); Has 120346 Blast hits to 118920 proteins in 4807 species: Archae - 116; Bacteria - 12493; Metazoa - 46290; Fungi - 10609; Plants - 32462; Viruses - 473; Other Eukaryotes - 17903 (source: NCBI BLink).","sp|Q91736|EPB1B_XENLA","Ephrin type-B receptor 1-B","gi|729349681|ref|XP_010542980.1|",{"$nulls":4},{"v":4.45971392793398,"d":"4.46"},{"v":4.08921384947471,"d":"4.09"},{"v":6.3249533817026,"d":"6.32"},{"v":4.51283170971326,"d":"4.51"}]
["g53553.t1",9987,4672,null,"cellular process","protein kinase activity",null,"ARATHwo_AT3G46920.1","Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (TAIR:AT1G79570.1); Has 114688 Blast hits to 113328 proteins in 4810 species: Archae - 114; Bacteria - 11620; Metazoa - 44899; Fungi - 9603; Plants - 31346; Viruses - 418; Other Eukaryotes - 16688 (source: NCBI BLink).","sp|O22558|STY8_ARATH","Serine/threonine-protein kinase STY8","gi|168036823|ref|XP_001770905.1|",{"$nulls":4},{"v":3.20761250951589,"d":"3.21"},{"v":6.779978348217,"d":"6.78"},{"v":4.58172083610629,"d":"4.58"},{"v":24.2534987862185,"d":"24.25"}]
["g53554.t1",{"$nulls":19},"X",null,"X"]
["g53555.t1",{"$nulls":15},{"v":0.0401203880218199,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.095442464865322,"d":"0.10"},{"v":0,"d":"0.00"}]
["g53556.t1",6414,"0003746:0005525:0003924","0005840:0005829","translational elongation","translation elongation factor activity:GTP binding:GTPase activity","ribosome:cytosol","ARATHwo_AT3G22980.1","Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1); Has 75542 Blast hits to 60298 proteins in 6538 species: Archae - 1481; Bacteria - 47710; Metazoa - 4520; Fungi - 3401; Plants - 1472; Viruses - 1; Other Eukaryotes - 16957 (source: NCBI BLink).","sp|Q7Z2Z2|ETUD1_HUMAN","Elongation factor Tu GTP-binding domain-containing protein 1","gi|302771566|ref|XP_002969201.1|",null,null,"x","x",{"v":4.34670087112609,"d":"4.35"},{"v":12.457691764197,"d":"12.46"},{"v":6.31065551121609,"d":"6.31"},{"v":17.7951365903628,"d":"17.80"}]
["g53557.t1",{"$nulls":15},{"v":0.0473178435688714,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.171432206584703,"d":"0.17"},{"v":0.107155579014855,"d":"0.11"}]
["g53558.t1",{"$nulls":8},"sp|A6NKG5|RTL1_HUMAN","Retrotransposon-like protein 1","gi|595441411|gb|EXX53826.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.132278538953831,"d":"0.13"},{"v":0.0447438191647703,"d":"0.04"},{"v":0,"d":"0.00"},"X"]
["g53559.t1",null,5488,null,null,"binding",{"$nulls":3},"sp|P15629|POL_SOCMV","Enzymatic polyprotein","gi|661175376|emb|CDH61339.1|",{"$nulls":8},"X"]
["g53560.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink)."]
["g53561.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|697188822|ref|XP_009603456.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0440130029126163,"d":"0.04"},{"v":0.0350262698252997,"d":"0.04"},{"v":0,"d":"0.00"},"X"]
["g79570.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.329526720073302,"d":"0.33"},{"v":3.09278984827627,"d":"3.09"},{"v":0.271320037505594,"d":"0.27"},"X",null,"X"]
["g79571.t1",{"$nulls":8},"sp|P11368|POL_IPMA","Putative Pol polyprotein","gi|5001453|gb|AAD37020.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.489054949694914,"d":"0.49"},{"v":0,"d":"0.00"},"X"]
["g53600.t1"]
["g53601.t1",{"$nulls":6},"ARATHwo_AT2G44230.1","Plant protein of unknown function (DUF946); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT2G44260.1); Has 432 Blast hits to 414 proteins in 115 species: Archae - 0; Bacteria - 34; Metazoa - 43; Fungi - 133; Plants - 207; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|917279670|ref|WP_051886382.1|"]
["g53602.t1",{"$nulls":11},"x"]
["g53603.t1",{"$nulls":6},"ARATHwo_AT5G12010.1","unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|688559892|ref|XP_009300611.1|",{"$nulls":8},"X"]
["g53604.t1",{"$nulls":6},"ARATHwo_AT5G43950.1","Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT1G04090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).",null,null,"gi|111150923|emb|CAJ62630.1|",{"$nulls":4},{"v":0.0300526958957681,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.193579664741213,"d":"0.19"}]
["g53605.t1",{"$nulls":10},"gi|727813395|ref|WP_033896912.1|"]
["g53606.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",{"$nulls":12},"X"]
["g53607.t1",{"$nulls":8},"sp|P0C6X2|R1AB_CVHN1","Replicase polyprotein 1ab"]
["g53608.t1",{"$nulls":10},"gi|302814915|ref|XP_002989140.1|"]
["g53609.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.102202251764248,"d":"0.10"},{"v":0.0456933626936207,"d":"0.05"}]
["g53610.t1",{"$nulls":6},"ARATHwo_AT5G18610.1","Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G13160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9LQQ8|RLCK7_ARATH","Probable serine/threonine-protein kinase RLCKVII","gi|595496422|gb|EXX77696.1|",{"$nulls":4},{"v":1.12605565545489,"d":"1.13"},{"v":4.26273052288533,"d":"4.26"},{"v":1.49034444978014,"d":"1.49"},{"v":2.17298556159544,"d":"2.17"}]
["g53611.t1",{"$nulls":19},"X",null,"X"]
["g53612.t1",{"$nulls":19},"X",null,"X"]
["g53613.t1",{"$nulls":6},"ARATHwo_AT3G56720.3","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.",{"$nulls":7},{"v":0.0373895900004102,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0.613190461280203,"d":"0.61"},{"v":0,"d":"0.00"},null,"X"]
["g53614.t1",{"$nulls":13},"x","x",{"v":4.15603878849108,"d":"4.16"},{"v":11.9906618406237,"d":"11.99"},{"v":3.45242742900419,"d":"3.45"},{"v":2.0760763213,"d":"2.08"}]
["g53615.t1",{"$nulls":6},"ARATHwo_AT5G10010.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink).",null,null,"gi|302766956|ref|XP_002966898.1|",null,null,"x","x",{"v":0,"d":"0.00"},{"v":1.98380287940421,"d":"1.98"},{"v":0,"d":"0.00"},{"v":4.63744221552791,"d":"4.64"}]
["g53616.t1",{"$nulls":6},"ARATHwo_AT5G55340.1","MBOAT (membrane bound O-acyl transferase) family protein; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT5G55350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FJ76|WAXS5_ARATH","Probable long-chain-alcohol O-fatty-acyltransferase 5","gi|302814852|ref|XP_002989109.1|",{"$nulls":4},{"v":0.18238977036483,"d":"0.18"},{"v":0.199770789067525,"d":"0.20"},{"v":0.119835172250015,"d":"0.12"},{"v":2.44518755602615,"d":"2.45"}]
["g53617.t1",{"$nulls":12},"x",null,"x",{"v":28.9315179808782,"d":"28.93"},{"v":10.359002550094,"d":"10.36"},{"v":4.93746826649391,"d":"4.94"},{"v":2.27559471429309,"d":"2.28"}]
["g53618.t1",6629,null,null,"lipid metabolic process",null,null,"ARATHwo_AT3G51970.1","acyl-CoA sterol acyl transferase 1 (ASAT1); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Wax synthase (InterPro:IPR017088); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT5G55350.1); Has 801 Blast hits to 791 proteins in 235 species: Archae - 0; Bacteria - 473; Metazoa - 0; Fungi - 36; Plants - 238; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).","sp|Q9SV07|ASAT1_ARATH","Acyl-CoA--sterol O-acyltransferase 1","gi|604314690|gb|EYU27396.1|",{"$nulls":4},{"v":4.01123646455305,"d":"4.01"},{"v":3.81347067272674,"d":"3.81"},{"v":1.57299063220585,"d":"1.57"},{"v":2.84998919961557,"d":"2.85"}]
["g53619.t1","0031348:0043407:0000303:0008219:0009873:0009863","0005515:0033550","0005829:0005886:0005634","negative regulation of defense response:negative regulation of MAP kinase activity:response to superoxide:cell death:ethylene mediated signaling pathway:salicylic acid mediated signaling pathway","protein binding:MAP kinase tyrosine phosphatase activity","cytosol:plasma membrane:nucleus","ARATHwo_AT1G71860.1","Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.","sp|O82656|PTP1_ARATH","Protein-tyrosine-phosphatase PTP1","gi|728851165|gb|KHG30608.1|",{"$nulls":4},{"v":0.0360707045816375,"d":"0.04"},{"v":0.580000631593107,"d":"0.58"},{"v":0.0383738961007303,"d":"0.04"},{"v":7.11472247864539,"d":"7.11"}]
["g53620.t1",{"$nulls":6},"ARATHwo_AT3G22220.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 845 Blast hits to 775 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 835; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).",null,null,"gi|470112143|ref|XP_004292297.1|",{"$nulls":9},"X"]
["g53621.t1",null,5488,null,null,"binding",null,"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|147791479|emb|CAN74509.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0263869534560057,"d":"0.03"},{"v":0.368798005777058,"d":"0.37"},{"v":0.0373093292932207,"d":"0.04"}]
["g53622.t1"]
["g53623.t1","0031348:0043407:0000303:0008219:0009873:0009863","0005515:0033550","0005829:0005886:0005634","negative regulation of defense response:negative regulation of MAP kinase activity:response to superoxide:cell death:ethylene mediated signaling pathway:salicylic acid mediated signaling pathway","protein binding:MAP kinase tyrosine phosphatase activity","cytosol:plasma membrane:nucleus",null,null,"sp|Q24708|CSW_DROVI","Tyrosine-protein phosphatase corkscrew","gi|116791562|gb|ABK26026.1|",{"$nulls":4},{"v":0.175768582049211,"d":"0.18"},{"v":6.08187576364616,"d":"6.08"},{"v":0.934572634687334,"d":"0.93"},{"v":20.873586299367,"d":"20.87"}]
["g53624.t1",{"$nulls":8},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|657989954|ref|XP_008387198.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.176206231334922,"d":"0.18"},{"v":0,"d":"0.00"},"X"]
["g79598.t1",{"$nulls":13},"x","x",{"v":0.184707307219933,"d":"0.18"},{"v":0.769999940679873,"d":"0.77"},{"v":0.211485237837666,"d":"0.21"},{"v":0,"d":"0.00"},"X",null,"X"]
["g79607.t1",6259,"0046872:0097159:1901363:0003824",null,"DNA metabolic process","metal ion binding:organic cyclic compound binding:heterocyclic compound binding:catalytic activity",{"$nulls":5},"gi|685268622|ref|XP_009125376.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.215566669464925,"d":"0.22"},{"v":0.988491861003856,"d":"0.99"},{"v":0.108095207049131,"d":"0.11"},"X"]
["g79615.t1",{"$nulls":6},"ARATHwo_AT1G79740.1","hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).",null,null,"gi|769814063|ref|XP_011622646.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.828686413880045,"d":"0.83"},{"v":1.02647230444205,"d":"1.03"},{"v":1.2780514956467,"d":"1.28"}]
["g53662.t1",{"$nulls":10},"gi|168001942|ref|XP_001753673.1|",null,"x","x","x",{"v":3.94646617811242,"d":"3.95"},{"v":1.90858227268068,"d":"1.91"},{"v":0.647599671617195,"d":"0.65"},{"v":5.75733594454326,"d":"5.76"}]
["g53662.t2",{"$nulls":10},"gi|168001942|ref|XP_001753673.1|",null,"x","x","x",{"v":3.94646617811242,"d":"3.95"},{"v":1.90858227268068,"d":"1.91"},{"v":0.647599671617195,"d":"0.65"},{"v":5.75733594454326,"d":"5.76"}]
["g53663.t1",{"$nulls":6},"ARATHwo_AT3G61700.2","Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT2G46420.1); Has 265 Blast hits to 263 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 3; Plants - 223; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).",null,null,"gi|573943568|ref|XP_006654155.1|",{"$nulls":4},{"v":6.99388670032445,"d":"6.99"},{"v":8.30469067869083,"d":"8.30"},{"v":5.58329728965459,"d":"5.58"},{"v":3.24269477833711,"d":"3.24"}]
["g53664.t1",44699,null,5739,"single-organism process",null,"mitochondrion","ARATHwo_AT5G27290.1","unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q5Z974|FTSH1_ORYSJ","ATP-dependent zinc metalloprotease FTSH 1, chloroplastic","gi|148908233|gb|ABR17231.1|",null,"x","x","x"]
["g53665.t1",{"$nulls":13},"x","x",{"v":3.41316245309147,"d":"3.41"},{"v":1.34618801153967,"d":"1.35"},{"v":3.05948069933349,"d":"3.06"},{"v":3.25948154898541,"d":"3.26"}]
["g53666.t1",{"$nulls":8},"sp|Q5XGC9|SRFB1_XENTR","Serum response factor-binding protein 1",{"$nulls":5},{"v":0.351789692284561,"d":"0.35"},{"v":14.7163170726338,"d":"14.72"},{"v":7.71419290948525,"d":"7.71"},{"v":1.63875379961238,"d":"1.64"},null,"X"]
["g53667.t1",{"$nulls":15},{"v":3.26004124585631,"d":"3.26"},{"v":1.42270386785816,"d":"1.42"},{"v":2.49955873568095,"d":"2.50"},{"v":5.17291742702968,"d":"5.17"}]
["g79616.t1","0044763:0003006:0009791:0044702:0048367:0006468","0004674:0005524",16020,"single-organism cellular process:developmental process involved in reproduction:post-embryonic development:single organism reproductive process:shoot system development:protein phosphorylation","protein serine/threonine kinase activity:ATP binding","membrane","ARATHwo_AT2G41970.1","Protein kinase superfamily protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G59350.2); Has 104388 Blast hits to 103490 proteins in 4408 species: Archae - 91; Bacteria - 12474; Metazoa - 38816; Fungi - 7787; Plants - 30601; Viruses - 278; Other Eukaryotes - 14341 (source: NCBI BLink).","sp|P93749|Y2197_ARATH","Probable protein kinase At2g41970","gi|157101316|dbj|BAF79989.1|",null,null,"x","x",{"v":4.61602312875589,"d":"4.62"},{"v":10.3161889972859,"d":"10.32"},{"v":2.72863376161692,"d":"2.73"},{"v":5.98019130724587,"d":"5.98"},"X"]
["g53668.t1"]
["g53669.t1",{"$nulls":15},{"v":1.33102073671348,"d":"1.33"},{"v":199.989512022004,"d":"199.99"},{"v":21.1126042344929,"d":"21.11"},{"v":1365.3532211616,"d":"1365.35"}]
["g53670.t1",{"$nulls":10},"gi|922504745|ref|XP_013589439.1|"]
["g53671.t1",6511,8270,null,"ubiquitin-dependent protein catabolic process","zinc ion binding",null,"ARATHwo_AT4G22350.2","Ubiquitin C-terminal hydrolases superfamily protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein (TAIR:AT4G22285.1).","sp|Q3TIX9|SNUT2_MOUSE","U4/U6.U5 tri-snRNP-associated protein 2","gi|778659784|ref|XP_011655023.1|",null,"x","x","x",{"v":7.48720110704951,"d":"7.49"},{"v":6.0461088729995,"d":"6.05"},{"v":5.29253330603086,"d":"5.29"},{"v":12.3929958402509,"d":"12.39"}]
["g53672.t1","0043170:0044238",5488,null,"macromolecule metabolic process:primary metabolic process","binding",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|359372825|gb|AEV42258.1|",{"$nulls":4},{"v":1.63872940833294,"d":"1.64"},{"v":2.15014493171608,"d":"2.15"},{"v":1.04722358105942,"d":"1.05"},{"v":0.310762790437573,"d":"0.31"},null,"X"]
["g53673.t1",{"$nulls":15},{"v":187.917769252235,"d":"187.92"},{"v":37.3076534570809,"d":"37.31"},{"v":11.8555166662374,"d":"11.86"},{"v":2.17950897370247,"d":"2.18"}]
["g433.t1",null,8233,null,null,"peptidase activity",null,"ARATHwo_AT5G51740.1","Peptidase family M48 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 6369 Blast hits to 6329 proteins in 1292 species: Archae - 10; Bacteria - 4324; Metazoa - 65; Fungi - 153; Plants - 45; Viruses - 0; Other Eukaryotes - 1772 (source: NCBI BLink).","sp|Q9P7G4|OMA1_SCHPO","Mitochondrial metalloendopeptidase OMA1","gi|168027290|ref|XP_001766163.1|",null,null,"x","x",{"v":5.16157553083991,"d":"5.16"},{"v":10.0278645620583,"d":"10.03"},{"v":11.5535642704794,"d":"11.55"},{"v":20.1796019302656,"d":"20.18"}]
["g434.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.372156568810598,"d":"0.37"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g435.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",{"$nulls":3},"x"]
["g436.t1",{"$nulls":15},{"v":0.706215735931321,"d":"0.71"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g437.t1"]
["g438.t1"]
["g439.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q96MB7|HARB1_HUMAN","Putative nuclease HARBI1","gi|602649931|ref|XP_007431365.1|"]
["g440.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3",null,"x",{"$nulls":3},{"v":0,"d":"0.00"},{"v":0.0253320476780103,"d":"0.03"},{"v":0.166487646193864,"d":"0.17"},{"v":0.174336904436146,"d":"0.17"}]
["g441.t1",{"$nulls":15},{"v":0.240516176800236,"d":"0.24"},{"v":0.131609726457601,"d":"0.13"},{"v":0.369903080543867,"d":"0.37"},{"v":0,"d":"0.00"},"X",null,"X"]
["g442.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.129398457589999,"d":"0.13"},{"v":0,"d":"0.00"}]
["g443.t1",{"$nulls":10},"gi|302809745|ref|XP_002986565.1|"]
["g444.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.080594355092218,"d":"0.08"},{"v":0.139534233935972,"d":"0.14"},"X"]
["g445.t1",{"$nulls":6},"ARATHwo_AT1G67340.1","HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).","sp|Q9FYF9|FB76_ARATH","F-box protein At1g67340","gi|302773327|ref|XP_002970081.1|",{"$nulls":4},{"v":3.114531893222,"d":"3.11"},{"v":1.23390446160097,"d":"1.23"},{"v":3.15173119539058,"d":"3.15"},{"v":1.27540655820428,"d":"1.28"}]
["g446.t1",{"$nulls":19},"X",null,"X"]
["g447.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.145990614189274,"d":"0.15"},{"v":0.963812607991135,"d":"0.96"},{"v":0,"d":"0.00"}]
["g448.t1",null,5488,null,null,"binding",{"$nulls":5},"gi|674229525|gb|KFK23310.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0986720744398573,"d":"0.10"},{"v":0,"d":"0.00"},"X"]
["g449.t1",{"$nulls":10},"gi|528890261|gb|EPZ30889.1|",{"$nulls":8},"X"]
["g450.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0186378219837198,"d":"0.02"},{"v":0.311619202703584,"d":"0.31"},{"v":0,"d":"0.00"},"X",null,"X"]
["g451.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923654746|ref|XP_013645649.1|",{"$nulls":4},{"v":0.0282258771939797,"d":"0.03"},{"v":0.307812134896225,"d":"0.31"},{"v":0.85043596096899,"d":"0.85"},{"v":0.250977703396973,"d":"0.25"},null,"X"]
["g452.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|77551986|gb|ABA94783.1|",{"$nulls":8},"X"]
["g453.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.054396289680786,"d":"0.05"},{"v":0.253664364473233,"d":"0.25"},{"v":0.129291003787877,"d":"0.13"}]
["g454.t1",{"$nulls":8},"sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|401889065|gb|EJT53006.1|",{"$nulls":4},{"v":0.227773367867884,"d":"0.23"},{"v":54.3778935053927,"d":"54.38"},{"v":10.2135101809941,"d":"10.21"},{"v":2.57749799710671,"d":"2.58"},"X"]
["g455.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein"]
["g456.t1",{"$nulls":6},"ARATHwo_AT3G63270.1","CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|B0BN95|HARB1_RAT","Putative nuclease HARBI1","gi|294461638|gb|ADE76379.1|",{"$nulls":4},{"v":0.0495027578848964,"d":"0.05"},{"v":0.12180982106056,"d":"0.12"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},"X"]
["g457.t1"]
["g458.t1",{"$nulls":20},"X","X"]
["g459.t1",{"$nulls":6},"ARATHwo_AT1G43722.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).",null,null,"gi|688549482|ref|XP_009298858.1|",{"$nulls":8},"X"]
["g460.t1"]
["g461.t1"]
["g462.t1",{"$nulls":13},"x","x",{"v":0.579134520389552,"d":"0.58"},{"v":1.25024862383761,"d":"1.25"},{"v":6.23734745552647,"d":"6.24"},{"v":4.22743117792298,"d":"4.23"},"X",null,"X"]
["g463.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0915492591329913,"d":"0.09"},{"v":0.388362471704732,"d":"0.39"},{"v":0.183545196536142,"d":"0.18"}]
["g464.t1",{"$nulls":10},"gi|595441411|gb|EXX53826.1|",{"$nulls":8},"X"]
["g465.t1","0043170:0044238",46872,null,"macromolecule metabolic process:primary metabolic process","metal ion binding",{"$nulls":3},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|923851538|ref|XP_013704108.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.498775368241231,"d":"0.50"},{"v":2.15047867305203,"d":"2.15"},{"v":0.807790868086598,"d":"0.81"},"X"]
["g466.t1"]
["g467.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|698479473|ref|XP_009786821.1|",{"$nulls":4},{"v":0.0415072535694016,"d":"0.04"},{"v":0.431845744899705,"d":"0.43"},{"v":1.68718941923212,"d":"1.69"},{"v":1.06672339183805,"d":"1.07"},"X"]
["g468.t1",8152,4045,null,"metabolic process","aminoacyl-tRNA hydrolase activity",null,"ARATHwo_AT4G32900.2","Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 933 Blast hits to 933 proteins in 345 species: Archae - 258; Bacteria - 52; Metazoa - 200; Fungi - 129; Plants - 88; Viruses - 8; Other Eukaryotes - 198 (source: NCBI BLink).","sp|Q3ZBL5|PTH2_BOVIN","Peptidyl-tRNA hydrolase 2, mitochondrial","gi|168046479|ref|XP_001775701.1|",{"$nulls":4},{"v":31.0660212399785,"d":"31.07"},{"v":23.4720652666047,"d":"23.47"},{"v":13.311106503866,"d":"13.31"},{"v":20.1827347141538,"d":"20.18"},null,"X"]
["g468.t2",8152,4045,null,"metabolic process","aminoacyl-tRNA hydrolase activity",{"$nulls":5},"gi|460399261|ref|XP_004245160.1|",{"$nulls":4},{"v":31.0660212399785,"d":"31.07"},{"v":23.4720652666047,"d":"23.47"},{"v":13.311106503866,"d":"13.31"},{"v":20.1827347141538,"d":"20.18"}]
["g469.t1",{"$nulls":6},"ARATHwo_ATMG00860.1","hypothetical protein","sp|P04323|POL3_DROME","Retrovirus-related Pol polyprotein from transposon 17.6","gi|729453080|ref|XP_010523613.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0218335698614456,"d":"0.02"},{"v":0.168687246967374,"d":"0.17"},{"v":0,"d":"0.00"},"X"]
["g470.t1",{"$nulls":6},"ARATHwo_AT4G17070.1","peptidyl-prolyl cis-trans isomerases; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); Has 214 Blast hits to 208 proteins in 48 species: Archae - 0; Bacteria - 43; Metazoa - 9; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).",null,null,"gi|645278940|ref|XP_008244466.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.890866688351334,"d":"0.89"},{"v":1.26773259836803,"d":"1.27"}]
["g471.t1",{"$nulls":6},"ARATHwo_AT1G21480.1","Exostosin family protein; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 1205 Blast hits to 1196 proteins in 102 species: Archae - 0; Bacteria - 8; Metazoa - 259; Fungi - 4; Plants - 850; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).","sp|Q8S1X8|GT14_ORYSJ","Probable glucuronosyltransferase Os01g0926600","gi|612400384|ref|XP_007515711.1|",null,null,"x","x",{"v":1.66634273361331,"d":"1.67"},{"v":5.19198866425677,"d":"5.19"},{"v":33.7818119587305,"d":"33.78"},{"v":9.67481494029809,"d":"9.67"}]
["g472.t1",6397,"1901363:0097159",null,"mRNA processing","heterocyclic compound binding:organic cyclic compound binding",null,"ARATHwo_AT5G65260.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9FJN9|PABN2_ARATH","Polyadenylate-binding protein 2","gi|168038419|ref|XP_001771698.1|",null,null,"x","x",{"v":2.63466124725124,"d":"2.63"},{"v":4.17403422964183,"d":"4.17"},{"v":7.86038165561674,"d":"7.86"},{"v":5.28204417247472,"d":"5.28"}]
["g473.t1",{"$nulls":8},"sp|P0CT40|TF29_SCHPO","Transposon Tf2-9 polyprotein","gi|727496944|ref|XP_010424558.1|",{"$nulls":4},{"v":0.0150764845135265,"d":"0.02"},{"v":0.0757911638824523,"d":"0.08"},{"v":0.333923737791841,"d":"0.33"},{"v":0.0973265918453714,"d":"0.10"},null,"X"]
["g474.t1",{"$nulls":13},"x","x",{"v":1.8779025341112,"d":"1.88"},{"v":14.9180791920821,"d":"14.92"},{"v":8.46827054252276,"d":"8.47"},{"v":10.8326352825478,"d":"10.83"}]
["g475.t1",{"$nulls":15},{"v":0.171880344546635,"d":"0.17"},{"v":0.520593560297642,"d":"0.52"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g476.t1",{"$nulls":6},"ARATHwo_AT3G58220.2","TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT3G58440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|Q7TD08|POL_CYLCV","Enzymatic polyprotein","gi|813213903|dbj|GAO47244.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.191149762150988,"d":"0.19"},{"v":0.529742777652901,"d":"0.53"},{"v":0,"d":"0.00"},null,"X"]
["g477.t1",42254,3723,"0005730:0005840","ribosome biogenesis","RNA binding","nucleolus:ribosome","ARATHwo_AT4G22380.1","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 1809 Blast hits to 1809 proteins in 413 species: Archae - 342; Bacteria - 16; Metazoa - 564; Fungi - 259; Plants - 274; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).","sp|Q5XH16|NH2L1_XENLA","NHP2-like protein 1","gi|168009760|ref|XP_001757573.1|",null,"x","x","x",{"v":88.3883221578272,"d":"88.39"},{"v":42.4689515449983,"d":"42.47"},{"v":14.7343154258372,"d":"14.73"},{"v":27.9170710926079,"d":"27.92"}]
["g478.t1",{"$nulls":13},"x","x",{"v":0.347048304155957,"d":"0.35"},{"v":0.263969451672618,"d":"0.26"},{"v":0,"d":"0.00"},{"v":1.69680138320564,"d":"1.70"}]
["g479.t1",null,"0046872:0000166:0003723",null,null,"metal ion binding:nucleotide binding:RNA binding",null,"ARATHwo_AT1G07360.1","Encodes MAC5A, a component of the MOS4-associated complex (MAC) that contributes to snc1- mediated autoimmunity. MAC is a highly conserved nuclear protein complex associated with the spliceosome. Homologues include AT1G07360 (MAC5A), AT2G29580 (MAC5B) and AT5G07060 (MAC5C).","sp|Q5SNN4|C3H40_ORYSJ","Zinc finger CCCH domain-containing protein 40","gi|586712748|ref|XP_006847071.1|",null,null,"x","x",{"v":24.3411897242718,"d":"24.34"},{"v":10.0407113206574,"d":"10.04"},{"v":11.1183752620031,"d":"11.12"},{"v":20.1057912219454,"d":"20.11"}]
["g479.t2",null,"0046872:0000166:0003723",null,null,"metal ion binding:nucleotide binding:RNA binding",null,"ARATHwo_AT5G04210.1","CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G29580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q54PH5|CWC2_DICDI","Pre-mRNA-splicing factor cwc2","gi|586712748|ref|XP_006847071.1|",{"$nulls":4},{"v":24.3411897242718,"d":"24.34"},{"v":10.0407113206574,"d":"10.04"},{"v":11.1183752620031,"d":"11.12"},{"v":20.1057912219454,"d":"20.11"}]
["g480.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0799288024275332,"d":"0.08"},{"v":0.0579971271838283,"d":"0.06"},null,"X","X"]
["g481.t1",{"$nulls":15},{"v":18.8889118824089,"d":"18.89"},{"v":19.4285799263342,"d":"19.43"},{"v":7.63686464995779,"d":"7.64"},{"v":25.6086039405883,"d":"25.61"}]
["g482.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.80788784317824,"d":"0.81"},{"v":0,"d":"0.00"}]
["g483.t1",{"$nulls":15},{"v":2.53856894909541,"d":"2.54"},{"v":0.0882886871457054,"d":"0.09"},{"v":0.332175497522295,"d":"0.33"},{"v":0.794042426967798,"d":"0.79"},null,"X","X"]
["g484.t1",{"$nulls":8},"sp|P08699|LEG3_RAT","Galectin-3","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0.0126757292145502,"d":"0.01"},{"v":0.0295177692598287,"d":"0.03"},{"v":0.184693822103596,"d":"0.18"},{"v":0.120920445565054,"d":"0.12"},null,"X"]
["g485.t1",6351,"0005488:0016787",null,"transcription, DNA-dependent","binding:hydrolase activity",null,"ARATHwo_AT5G58003.1","Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences.","sp|Q00IB6|CPL4_ARATH","RNA polymerase II C-terminal domain phosphatase-like 4","gi|168059994|ref|XP_001781984.1|",{"$nulls":4},{"v":0.932491218461785,"d":"0.93"},{"v":1.96346093047764,"d":"1.96"},{"v":3.56885331044684,"d":"3.57"},{"v":1.84986722234074,"d":"1.85"}]
["g486.t1",{"$nulls":6},"ARATHwo_AT3G24255.1","RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1); Has 2050 Blast hits to 1978 proteins in 93 species: Archae - 11; Bacteria - 19; Metazoa - 133; Fungi - 20; Plants - 1757; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).","sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|141475|sp|P14381.1|YTX2_XENLA",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.161850760469028,"d":"0.16"},{"v":0,"d":"0.00"}]
["g487.t1"]
["g488.t1",{"$nulls":6},"ARATHwo_AT3G45555.1","RING/U-box protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2546 Blast hits to 2530 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 1126; Fungi - 452; Plants - 617; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).","sp|Q557K0|Y3509_DICDI","TNF receptor-associated factor family protein DDB_G0273433/DDB_G0273509","gi|576991588|gb|EUC64290.1|",null,null,"x","x",{"v":0.268541771534658,"d":"0.27"},{"v":0.723336217700151,"d":"0.72"},{"v":1.43031934230172,"d":"1.43"},{"v":0.270790175863893,"d":"0.27"}]
["g489.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|727591423|ref|XP_010468773.1|",{"$nulls":9},"X"]
["g489.t2",{"$nulls":6},"ARATHwo_AT2G03780.1","Translin family protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068); Has 561 Blast hits to 561 proteins in 195 species: Archae - 92; Bacteria - 2; Metazoa - 209; Fungi - 153; Plants - 36; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).","sp|P0CT39|TF26_SCHPO","Transposon Tf2-6 polyprotein","gi|727591423|ref|XP_010468773.1|"]
["g490.t1","0006278:0006508:0006310","0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",null,"ARATHwo_ATMG00860.1","hypothetical protein","sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923592806|ref|XP_013739312.1|",{"$nulls":4},{"v":0.0652133603640919,"d":"0.07"},{"v":0.58596561665658,"d":"0.59"},{"v":1.7652290560288,"d":"1.77"},{"v":1.25874156641346,"d":"1.26"},null,"X"]
["g491.t1",6259,3676,null,"DNA metabolic process","nucleic acid binding",{"$nulls":3},"sp|P31792|POL_FENV1","Pol polyprotein","gi|4680179|gb|AAD27547.1|AF111709_1",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.145039995632072,"d":"0.15"},{"v":0.433936943132069,"d":"0.43"},{"v":0.482083976574191,"d":"0.48"},"X"]
["g492.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0907650084917787,"d":"0.09"},{"v":0.380568066762942,"d":"0.38"},{"v":0,"d":"0.00"},"X",null,"X"]
["g493.t1",{"$nulls":8},"sp|Q66H30|GIN1_RAT","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":2.68936868037805,"d":"2.69"},{"v":0.301445888428873,"d":"0.30"},{"v":2.44873714164556,"d":"2.45"},{"v":2.18966201176718,"d":"2.19"},null,"X"]
["g53674.t1",{"$nulls":19},"X",null,"X"]
["g53675.t1",{"$nulls":13},"x","x",{"v":0.496605328255898,"d":"0.50"},{"v":30.499480352847,"d":"30.50"},{"v":0.357634874131738,"d":"0.36"},{"v":172.183612000204,"d":"172.18"}]
["g53676.t1",{"$nulls":8},"sp|A4FUB7|GIN1_BOVIN","Gypsy retrotransposon integrase-like protein 1","gi|528890261|gb|EPZ30889.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0979317296850547,"d":"0.10"},{"v":0,"d":"0.00"},"X"]
["g53677.t1",6810,null,"0012505:0043231:0044444:0016020","transport",null,"endomembrane system:intracellular membrane-bounded organelle:cytoplasmic part:membrane","ARATHwo_AT1G09580.1","emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G57620.1); Has 1762 Blast hits to 1760 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 806; Fungi - 509; Plants - 239; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).","sp|Q6IDL4|P24D3_ARATH","Transmembrane emp24 domain-containing protein p24delta3","gi|168026300|ref|XP_001765670.1|",null,"x","x","x",{"v":58.9349333992969,"d":"58.93"},{"v":92.56579736317,"d":"92.57"},{"v":36.8173179102781,"d":"36.82"},{"v":38.6750418231469,"d":"38.68"}]
["g53678.t1",{"$nulls":15},{"v":1.29949475822621,"d":"1.30"},{"v":4.10307751644338,"d":"4.10"},{"v":2.39912479667881,"d":"2.40"},{"v":0.602001945484144,"d":"0.60"}]
["g53679.t1","0009396:0016117:0000023:0019252","0030272:0005524",9507,"folic acid-containing compound biosynthetic process:carotenoid biosynthetic process:maltose metabolic process:starch biosynthetic process","5-formyltetrahydrofolate cyclo-ligase activity:ATP binding","chloroplast","ARATHwo_AT1G76730.1","Encodes a paralog of ATP-dependent folate salvage enzyme 5-formyltetrahydrofolate cycloligase (5-FCL) that is targeted to chloroplasts and to be required for embryo viability and lacks 5-FCL activity.","sp|Q9SRE0|5FCLL_ARATH","5-formyltetrahydrofolate cyclo-ligase-like protein COG0212","gi|116789708|gb|ABK25351.1|",null,null,"x","x",{"v":12.7534546522204,"d":"12.75"},{"v":10.6711167899104,"d":"10.67"},{"v":5.96363209246421,"d":"5.96"},{"v":13.1373595783664,"d":"13.14"}]
["g53680.t1",{"$nulls":6},"ARATHwo_AT3G27310.1","encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo.","sp|Q9LK22|PUX1_ARATH","Plant UBX domain-containing protein 1","gi|168036666|ref|XP_001770827.1|",null,null,"x","x",{"v":10.5492386767899,"d":"10.55"},{"v":11.4495763585018,"d":"11.45"},{"v":28.7956507342548,"d":"28.80"},{"v":85.7229435172031,"d":"85.72"}]
["g53681.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0281793347536646,"d":"0.03"},{"v":0,"d":"0.00"}]
["g79646.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.2939653680433,"d":"0.29"},{"v":0.300157461281057,"d":"0.30"},{"v":0,"d":"0.00"},null,"X","X"]
["g53682.t1",{"$nulls":8},"sp|P14381|YTX2_XENLA","Transposon TX1 uncharacterized 149 kDa protein","gi|34392578|dbj|BAC82621.1|",{"$nulls":9},"X"]
["g53683.t1",{"$nulls":6},"ARATHwo_AT4G08450.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 55059 Blast hits to 21265 proteins in 952 species: Archae - 84; Bacteria - 24337; Metazoa - 4372; Fungi - 1058; Plants - 20302; Viruses - 196; Other Eukaryotes - 4710 (source: NCBI BLink).","sp|P0C6U3|R1A_CVHN1","Replicase polyprotein 1a"]
["g53684.t1",{"$nulls":15},{"v":1.1974510726358,"d":"1.20"},{"v":3.01002985803218,"d":"3.01"},{"v":3.32408617837065,"d":"3.32"},{"v":7.0820511344712,"d":"7.08"}]
["g53685.t1",{"$nulls":8},"sp|P21328|RTJK_DROME","RNA-directed DNA polymerase from mobile element jockey","gi|557020361|ref|XP_006010506.1|",{"$nulls":4},{"v":0.0394953722246675,"d":"0.04"},{"v":5.87916586510784,"d":"5.88"},{"v":5.87530485400682,"d":"5.88"},{"v":2.66966556628745,"d":"2.67"}]
["g53686.t1",{"$nulls":10},"gi|253759791|ref|XP_002488947.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0192013666112076,"d":"0.02"},{"v":0.0152658314419943,"d":"0.02"},{"v":0,"d":"0.00"}]
["g53687.t1",{"$nulls":10},"gi|330915050|ref|XP_003296883.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.139744573516675,"d":"0.14"},{"v":0,"d":"0.00"},"X"]
["g53688.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|50878384|gb|AAT85159.1|",{"$nulls":8},"X"]
["g53689.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.750041651589135,"d":"0.75"},{"v":0.669342737781485,"d":"0.67"},{"v":0.178742401155243,"d":"0.18"},"X",null,"X"]
["g53690.t1",{"$nulls":13},"x","x",{"v":0.815265018591101,"d":"0.82"},{"v":2.15104181628909,"d":"2.15"},{"v":3.87633985310546,"d":"3.88"},{"v":2.04723780573221,"d":"2.05"}]
["g53691.t1"]
["g53692.t1",{"$nulls":8},"sp|Q99315|YG31B_YEAST","Transposon Ty3-G Gag-Pol polyprotein","gi|923912317|ref|XP_013725862.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.173293912965318,"d":"0.17"},{"v":0,"d":"0.00"},"X"]
["g53693.t1"]
["g53694.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":2.62789633233425,"d":"2.63"},{"v":5.38619649917803,"d":"5.39"},{"v":1.41996633144574,"d":"1.42"},"X",null,"X"]
["g53695.t1",{"$nulls":6},"ARATHwo_AT1G65810.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G65780.1); Has 6257 Blast hits to 5371 proteins in 1056 species: Archae - 197; Bacteria - 1787; Metazoa - 1336; Fungi - 1200; Plants - 672; Viruses - 106; Other Eukaryotes - 959 (source: NCBI BLink).","sp|B6SFA4|MAA3_ARATH","Probable helicase MAGATAMA 3","gi|77557165|gb|ABA99961.1|",{"$nulls":4},{"v":0.857106510794112,"d":"0.86"},{"v":3.04802582421953,"d":"3.05"},{"v":0.983827615647027,"d":"0.98"},{"v":12.8654786789872,"d":"12.87"},null,"X"]
["g53696.t1",null,16772,null,null,"transferase activity, transferring phosphorus-containing groups",null,"ARATHwo_AT5G61550.2","U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).","sp|Q9FKG6|PUB52_ARATH","U-box domain-containing protein 52","gi|743778886|ref|XP_010919905.1|",{"$nulls":4},{"v":0.0331227970357597,"d":"0.03"},{"v":0.0443365581476093,"d":"0.04"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g53697.t1",null,16740,null,null,"transferase activity",null,"ARATHwo_AT1G17540.1","Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G72760.1); Has 111948 Blast hits to 110754 proteins in 4644 species: Archae - 110; Bacteria - 12962; Metazoa - 41520; Fungi - 9180; Plants - 32064; Viruses - 278; Other Eukaryotes - 15834 (source: NCBI BLink).","sp|O64477|Y2913_ARATH","G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130","gi|475538235|gb|EMT09216.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.235329139413856,"d":"0.24"},{"v":0.085404235093035,"d":"0.09"}]
["g53698.t1",{"$nulls":20},"X","X"]
["g53699.t1"]
["g53700.t1",{"$nulls":6},"ARATHwo_AT3G44590.2","60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","sp|O24415|RLA2B_MAIZE","60S acidic ribosomal protein P2B","gi|695015831|ref|XP_009394805.1|",null,"x","x","x",{"v":1703.61591720643,"d":"1703.62"},{"v":569.227962299931,"d":"569.23"},{"v":201.661917546154,"d":"201.66"},{"v":321.33312396378,"d":"321.33"}]
["g53701.t1"]
["g53702.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).","sp|Q8VZ20|ASR3_ARATH","Trihelix transcription factor ASR3","gi|548834102|gb|ERM96539.1|"]
["g53703.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.0570195348680907,"d":"0.06"},{"v":0,"d":"0.00"}]
["g79663.t1",{"$nulls":13},"x","x",{"v":1.0878430136166,"d":"1.09"},{"v":0.469881879029621,"d":"0.47"},{"v":2.08699490251393,"d":"2.09"},{"v":2.90911086105983,"d":"2.91"}]
["g79664.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.0724897867805683,"d":"0.07"},{"v":0.180463704672975,"d":"0.18"},{"v":0,"d":"0.00"}]
["g53704.t1",6891,null,"0005829:0017119","intra-Golgi vesicle-mediated transport",null,"cytosol:Golgi transport complex","ARATHwo_AT1G67930.1","Golgi transport complex protein-related; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved oligomeric Golgi complex, subunit 5 (InterPro:IPR019465); Has 4471 Blast hits to 590 proteins in 146 species: Archae - 0; Bacteria - 79; Metazoa - 393; Fungi - 221; Plants - 65; Viruses - 7; Other Eukaryotes - 3706 (source: NCBI BLink).","sp|Q8C0L8|COG5_MOUSE","Conserved oligomeric Golgi complex subunit 5","gi|720072744|ref|XP_010278476.1|",null,null,"x","x",{"v":5.80470880502493,"d":"5.80"},{"v":8.674817438552,"d":"8.67"},{"v":4.80466760223242,"d":"4.80"},{"v":4.25988796822689,"d":"4.26"}]
["g53705.t1",{"$nulls":10},"gi|698558013|ref|XP_009771183.1|",{"$nulls":4},{"v":1.87658089035822,"d":"1.88"},{"v":0.53789609220257,"d":"0.54"},{"v":5.6972151213613,"d":"5.70"},{"v":0.555533430562518,"d":"0.56"}]
["g53705.t2",{"$nulls":6},"ARATHwo_AT2G31890.1","Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance.",null,null,"gi|698558013|ref|XP_009771183.1|",{"$nulls":4},{"v":1.87658089035822,"d":"1.88"},{"v":0.53789609220257,"d":"0.54"},{"v":5.6972151213613,"d":"5.70"},{"v":0.555533430562518,"d":"0.56"}]
["g53706.t1",{"$nulls":6},"ARATHwo_AT5G51800.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 821 Blast hits to 813 proteins in 138 species: Archae - 2; Bacteria - 24; Metazoa - 127; Fungi - 81; Plants - 483; Viruses - 14; Other Eukaryotes - 90 (source: NCBI BLink).",{"$nulls":7},{"v":24.1563700033158,"d":"24.16"},{"v":14.4463661478055,"d":"14.45"},{"v":1.94899280673117,"d":"1.95"},{"v":0,"d":"0.00"}]
["g53707.t1",{"$nulls":6},"ARATHwo_AT5G01650.2","Tautomerase/MIF superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: Tautomerase/MIF superfamily protein (TAIR:AT5G57170.2); Has 820 Blast hits to 820 proteins in 207 species: Archae - 0; Bacteria - 141; Metazoa - 384; Fungi - 26; Plants - 141; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).","sp|Q76BK2|MIF_XENLA","Macrophage migration inhibitory factor","gi|168032831|ref|XP_001768921.1|",null,null,"x","x",{"v":589.684326007009,"d":"589.68"},{"v":15.852625787314,"d":"15.85"},{"v":10.4029023006542,"d":"10.40"},{"v":10.9531939020281,"d":"10.95"}]
["g53708.t1",{"$nulls":8},"sp|P20825|POL2_DROME","Retrovirus-related Pol polyprotein from transposon 297","gi|595484032|gb|EXX71174.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.42529615930331,"d":"0.43"},{"v":0,"d":"0.00"}]
["g53709.t1",{"$nulls":6},"ARATHwo_AT5G33406.1","hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).",null,null,"gi|923636757|ref|XP_013639878.1|"]
["g53710.t1"]
["g53711.t1",{"$nulls":6},"ARATHwo_AT4G32190.1","Myosin heavy chain-related protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","sp|P93203|MFP1_SOLLC","MAR-binding filament-like protein 1","gi|604300434|gb|EYU20252.1|",null,null,"x","x",{"v":0.534825159989106,"d":"0.53"},{"v":6.72429361979359,"d":"6.72"},{"v":8.48820799469998,"d":"8.49"},{"v":2.90895062349509,"d":"2.91"}]
["g53712.t1",null,null,16020,null,null,"membrane","ARATHwo_ATMG00860.1","hypothetical protein","sp|P92523|M860_ARATH","Uncharacterized mitochondrial protein AtMg00860","gi|659068885|ref|XP_008446938.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.0912542060870533,"d":"0.09"},{"v":0.72901823348719,"d":"0.73"},{"v":0.306403263920325,"d":"0.31"},"X"]
["g53713.t1",{"$nulls":6},"ARATHwo_AT1G67325.2","Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1).","sp|Q8GZ43|YZR3_ARATH","RanBP2-type zinc finger protein At1g67325","gi|116791184|gb|ABK25887.1|",null,"x","x","x",{"v":18.4976778309075,"d":"18.50"},{"v":22.0233721650749,"d":"22.02"},{"v":30.569405507052,"d":"30.57"},{"v":8.59826081988754,"d":"8.60"}]
["g53714.t1",{"$nulls":6},"ARATHwo_AT4G31400.1","Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.","sp|A7UL74|CTF7_ARATH","Protein CHROMOSOME TRANSMISSION FIDELITY 7","gi|902190905|gb|KNA11721.1|",null,null,"x","x",{"v":0.3251543452749,"d":"0.33"},{"v":0.636317165387274,"d":"0.64"},{"v":1.03573195611197,"d":"1.04"},{"v":15.0481049880062,"d":"15.05"}]
["g53715.t1",6470,4721,null,"protein dephosphorylation","phosphoprotein phosphatase activity",null,"ARATHwo_AT3G55270.1","Encodes MAP kinase phosphatase 1 (MKP1). Loss of MKP1 results in hypersensitivity to acute UV-B stress, but without impairing UV-B acclimation.","sp|Q9C5S1|MKP1_ARATH","Protein-tyrosine-phosphatase MKP1","gi|747078994|ref|XP_011086678.1|",{"$nulls":4},{"v":0.0218449500739897,"d":"0.02"},{"v":0,"d":"0.00"},{"v":1.37859272838985,"d":"1.38"},{"v":0,"d":"0.00"}]
["g79677.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.6737814929154,"d":"0.67"},{"v":0.244816428030507,"d":"0.24"},"X",null,"X"]
["g53716.t1",{"$nulls":8},"sp|Q52QI2|RTL1_BOVIN","Retrotransposon-like protein 1","gi|384486216|gb|EIE78396.1|",{"$nulls":8},"X"]
["g53717.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0.147046725897578,"d":"0.15"},{"v":0,"d":"0.00"},{"v":0.105144473462713,"d":"0.11"}]
["g53718.t1",{"$nulls":8},"sp|P31843|RRPO_OENBE","RNA-directed DNA polymerase homolog","gi|727509438|ref|XP_010430902.1|",{"$nulls":4},{"v":0.0489919349305521,"d":"0.05"},{"v":0,"d":"0.00"},{"v":0.114584027128982,"d":"0.11"},{"v":0.0928549594339057,"d":"0.09"},"X"]
["g53719.t1"]
["g53720.t1"]
["g53721.t1"]
["g53722.t1",{"$nulls":8},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|645233554|ref|XP_008223402.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0.119656482463454,"d":"0.12"},{"v":0.113978196741963,"d":"0.11"},{"v":0,"d":"0.00"}]
["g53723.t1"]
["g53724.t1",{"$nulls":15},{"v":0.0249063585176468,"d":"0.02"},{"v":0.0334757059200973,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"}]
["g53725.t1",{"$nulls":6},"ARATHwo_AT3G55350.1","PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","sp|Q6AZB8|HARB1_DANRE","Putative nuclease HARBI1","gi|340382901|ref|XP_003389956.1|",{"$nulls":9},"X"]
["g53726.t1",{"$nulls":19},"X",null,"X"]
["g79687.t1",8152,"0003924:0005525",null,"metabolic process","GTPase activity:GTP binding",null,"ARATHwo_AT1G21160.1","eukaryotic translation initiation factor 2 (eIF-2) family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 (eIF-2) family protein (TAIR:AT1G76810.1); Has 90488 Blast hits to 74140 proteins in 3758 species: Archae - 1026; Bacteria - 37280; Metazoa - 18910; Fungi - 5896; Plants - 2823; Viruses - 221; Other Eukaryotes - 24332 (source: NCBI BLink).","sp|Q10251|IF2P_SCHPO","Eukaryotic translation initiation factor 5B","gi|548834939|gb|ERM96879.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":23.4285084206344,"d":"23.43"},{"v":28.2963885939836,"d":"28.30"},{"v":21.2818863582321,"d":"21.28"}]
["g79689.t1",{"$nulls":19},"X",null,"X"]
["g79690.t1",{"$nulls":10},"gi|657883219|ref|WP_029587568.1|",{"$nulls":8},"X"]
["g79694.t1",{"$nulls":6},"ARATHwo_AT4G08180.1","OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2760 Blast hits to 2567 proteins in 218 species: Archae - 0; Bacteria - 4; Metazoa - 1466; Fungi - 697; Plants - 301; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).","sp|Q8L751|ORP1C_ARATH","Oxysterol-binding protein-related protein 1C","gi|743871761|ref|XP_011033946.1|",null,null,"x","x",{"v":2.51958569610067,"d":"2.52"},{"v":7.57948458013297,"d":"7.58"},{"v":13.5708665676302,"d":"13.57"},{"v":11.8623067763239,"d":"11.86"}]
["g79697.t1",{"$nulls":19},"X",null,"X"]
["g53727.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.33721781780264,"d":"0.34"},{"v":0,"d":"0.00"}]
["g53728.t1",{"$nulls":6},"ARATHwo_AT1G18780.1","RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G29840.1); Has 8581 Blast hits to 8560 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2597; Fungi - 649; Plants - 4074; Viruses - 26; Other Eukaryotes - 1235 (source: NCBI BLink).",{"$nulls":7},{"v":2.32939561632695,"d":"2.33"},{"v":3.33266370436472,"d":"3.33"},{"v":29.76107376053,"d":"29.76"},{"v":5.0995397965511,"d":"5.10"}]
["g53729.t1",null,null,"0016020:0016023",null,null,"membrane:cytoplasmic membrane-bounded vesicle","ARATHwo_AT5G01460.1","LMBR1-like membrane protein; CONTAINS InterPro DOMAIN/s: LMBR1-like membrane protein, conserved region (InterPro:IPR006876); BEST Arabidopsis thaliana protein match is: LMBR1-like membrane protein (TAIR:AT3G08930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","sp|Q9M028|LMBD2_ARATH","LIMR family protein At5g01460","gi|672131210|ref|XP_008789162.1|",null,null,"x","x",{"v":5.36347478338862,"d":"5.36"},{"v":3.69933415739883,"d":"3.70"},{"v":6.63890913947389,"d":"6.64"},{"v":3.68919519011206,"d":"3.69"}]
["g53730.t1",{"$nulls":8},"sp|P53353|ASPX_VULVU","Sperm acrosomal protein FSA-ACR.1",{"$nulls":5},{"v":1.49114633852225,"d":"1.49"},{"v":0.73932733574878,"d":"0.74"},{"v":4.74195207234433,"d":"4.74"},{"v":3.59028110737608,"d":"3.59"},null,"X"]
["g53731.t1",{"$nulls":6},"ARATHwo_AT3G17450.1","hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).",null,null,"gi|565349638|ref|XP_006341796.1|",{"$nulls":4},{"v":0.0153657660914923,"d":"0.02"},{"v":0.1685161065378,"d":"0.17"},{"v":0.706148847318415,"d":"0.71"},{"v":0.184968624684259,"d":"0.18"},null,"X"]
["g53732.t1",{"$nulls":15},{"v":1.13333127847377,"d":"1.13"},{"v":1.87204932630424,"d":"1.87"},{"v":2.41046803922384,"d":"2.41"},{"v":2.6520874509951,"d":"2.65"}]
["g53733.t1",{"$nulls":19},"X",null,"X"]
["g53734.t1",{"$nulls":10},"gi|297823363|ref|XP_002879564.1|","x",{"$nulls":3},{"v":0.0335237367237918,"d":"0.03"},{"v":0,"d":"0.00"},{"v":0.044268015356015,"d":"0.04"},{"v":0,"d":"0.00"}]
["g53735.t1",{"$nulls":13},"x","x",{"v":4.28207395266773,"d":"4.28"},{"v":4.73759868898755,"d":"4.74"},{"v":6.07569215908497,"d":"6.08"},{"v":1.95779820544662,"d":"1.96"}]
["g53736.t1",{"$nulls":15},{"v":0.366992754851024,"d":"0.37"},{"v":2.15193020160496,"d":"2.15"},{"v":3.43632988752988,"d":"3.44"},{"v":1.30780671201619,"d":"1.31"}]
["g53737.t1","0006278:0006508:0006310","0046872:0003964:0003677:0003723:0004190",null,"RNA-dependent DNA replication:proteolysis:DNA recombination","metal ion binding:RNA-directed DNA polymerase activity:DNA binding:RNA binding:aspartic-type endopeptidase activity",{"$nulls":3},"sp|Q7LHG5|YI31B_YEAST","Transposon Ty3-I Gag-Pol polyprotein","gi|923732675|ref|XP_013668614.1|",{"$nulls":4},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.383159384211651,"d":"0.38"},{"v":0,"d":"0.00"},"X"]
["g53738.t1",{"$nulls":6},"ARATHwo_AT3G29090.1","Encodes an atypical pectin methylesterase that does not require salt for its activity and has a blockwise mode of pectin demethylesterification.","sp|Q9LVQ0|PME31_ARATH","Pectinesterase 31","gi|168007723|ref|XP_001756557.1|",{"$nulls":4},{"v":0.0984411348860928,"d":"0.10"},{"v":1.74143117168641,"d":"1.74"},{"v":109.058268010248,"d":"109.06"},{"v":15.6667726558306,"d":"15.67"}]
["g53739.t1",{"$nulls":19},"X",null,"X"]
["g53740.t1",{"$nulls":6},"ARATHwo_AT1G79990.1","structural molecules; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, endomembrane system, COPI vesicle coat; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat (InterPro:IPR001680), Integral membrane protein SYS1-related (InterPro:IPR019185), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT1G52360.1); Has 74874 Blast hits to 32688 proteins in 816 species: Archae - 58; Bacteria - 8441; Metazoa - 30042; Fungi - 16255; Plants - 9898; Viruses - 0; Other Eukaryotes - 10180 (source: NCBI BLink).","sp|A7S6Y0|SYS1_NEMVE","Protein SYS1 homolog","gi|769812028|ref|XP_011623356.1|",{"$nulls":4},{"v":3.83489741002647,"d":"3.83"},{"v":8.80869302363846,"d":"8.81"},{"v":5.82528930298282,"d":"5.83"},{"v":7.89125276054275,"d":"7.89"}]
["g53741.t1",{"$nulls":15},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0.796492329558861,"d":"0.80"},{"v":0,"d":"0.00"}]
["g53742.t1",null,"0003723:0000166",44424,null,"RNA binding:nucleotide binding","intracellular part","ARATHwo_AT2G36660.1","polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.","sp|P31209|PABP_SCHPO","Polyadenylate-binding protein, cytoplasmic and nuclear","gi|302767104|ref|XP_002966972.1|",null,null,"x","x"]
["g53742.t2",null,"0003723:0000166",44424,null,"RNA binding:nucleotide binding","intracellular part","ARATHwo_AT1G49760.1","polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.","sp|P29341|PABP1_MOUSE","Polyadenylate-binding protein 1","gi|302767104|ref|XP_002966972.1|"]