Step 1:

OPTION 1: one or more query genes

  • Paste a list of GRMZM code in the text area on the left
  • The GRMZM code may be seperated by tabs, spaces, semicolon, commas and newlines
  • The GRMZM code are case insensitive allowing to mingle upper and lower case letters, e.g. GrMzM2G064328, gRMzm2g121510, or GRMZM2g007734
  • Homologous genes from rice or Arabidopsis as well as other maize gene identifiers are also allowed as input, e.g. At4g04885, Os02g10060, or ZM08G15930 ?

Step 3:

Show:

Pairwise interactions
Interactions of query protein(s) with neighbours
     Interactions between neighbours

Output:

Cytoscape (starts automatically ?)
Text

Step 2:

Note, all protein-protein interactions were transfered from Arabidopsis thaliana as predicted protein-protein interactions via interologs!

Select database(s) to fetch protein-protein interactions from:

BAR : experimental predicted both
DeBodt (predicted - low stringency) : experimental predicted both
DeBodt (filtered - high stringency) : experimental predicted both
AtPID : experimental predicted both
IntAct : experimental predicted both
BioGRID : experimental predicted both
ArathReactome : experimental predicted both
TAIR : experimental predicted both
DIP : experimental predicted both
MINT : experimental predicted both
Ath Interactome Mapping Consortium : experimental predicted both

Please allow pop-ups. Also do co-expression analysis on the generated network Show localization of genes