Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene families associated with InterPro domain IPR020097
All gene family content
is shown and individual cells refer to the target genes (per species).
- InterPro domain
- IPR020097
- InterPro domain description
- Pseudouridine synthase I, TruA, alpha/beta domain
- #associated genes
- 171
- #associated gene families
- 6
Click table-header(s) to enable sorting
| Gene family | #genes (in total) | #associated genes | species | ath | bdi | cpa | cre | hvu | mac | olu | osa | osaindica | ppa | ptr | sbi | sit | sly | vvi | zma |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HOM03M005165 | 19 | 19 | 16 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 |
| HOM03M004820 | 20 | 18 | 16 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| HOM03M005569 | 18 | 17 | 16 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 |
| HOM03M004733 | 20 | 16 | 16 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 1 | 1 | 2 | 1 | 1 |
| HOM03M006942 | 15 | 15 | 15 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| HOM03M006356 | 16 | 13 | 15 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 2 | 1 | 1 |
- #genes (in total)
- This is the number of genes in the entire gene family.
- #associated genes
- This is the number of genes that are part of the gene family, and also have the specified InterPro domain. Naturaly, this number should be a subset of "#genes (in total)".