Child GO terms

Original GO term
GO:0016070
Description
RNA metabolic process
Type
BP

GO description genes species ath bdi cpa cre hvu mac olu osa osaindica ppa ptr sbi sit sly vvi zma
GO:0032774 RNA biosynthetic process 26156 16 3025 1396 1852 341 1235 2247 296 1687 1912 1335 2356 1522 1750 1811 1319 2072
GO:0006351 transcription, DNA-templated 26109 16 3020 1393 1850 338 1233 2244 292 1685 1910 1332 2353 1521 1747 1805 1317 2069
GO:0051252 regulation of RNA metabolic process 23703 16 2719 1258 1721 278 1113 2089 240 1542 1773 1178 2163 1371 1589 1614 1175 1880
GO:2001141 regulation of RNA biosynthetic process 23577 16 2705 1252 1715 274 1103 2081 238 1533 1762 1170 2153 1364 1582 1609 1166 1870
GO:0006355 regulation of transcription, DNA-dependent 23551 16 2701 1252 1712 273 1102 2078 238 1533 1762 1168 2150 1364 1581 1603 1165 1869
GO:0006396 RNA processing 6515 16 1076 336 355 259 297 410 273 366 405 353 450 351 331 485 341 427
GO:0034660 ncRNA metabolic process 3738 16 521 188 224 181 165 217 183 216 268 215 272 195 193 259 215 226
GO:0016071 mRNA metabolic process 2457 16 480 121 127 85 113 168 85 135 130 153 170 120 126 161 127 156
GO:0006399 tRNA metabolic process 2433 16 170 129 149 111 117 158 135 145 200 153 189 139 129 191 156 162
GO:0034470 ncRNA processing 2421 16 426 118 133 113 98 133 128 135 160 126 177 107 114 187 127 139
GO:0006397 mRNA processing 1953 16 268 106 106 72 98 143 70 115 110 131 146 102 108 135 107 136
GO:0009451 RNA modification 1670 16 449 73 90 71 66 86 78 82 118 73 109 69 71 74 73 88
GO:0051253 negative regulation of RNA metabolic process 1655 16 409 88 84 36 83 93 28 81 87 85 109 82 82 107 96 105
GO:0045892 negative regulation of transcription, DNA-dependent 1654 16 409 88 84 35 83 93 28 81 87 85 109 82 82 107 96 105
GO:0008380 RNA splicing 1442 16 342 69 68 42 64 91 29 80 77 68 97 103 68 76 65 103
GO:0051254 positive regulation of RNA metabolic process 1418 16 475 64 72 29 53 71 22 65 70 73 89 60 64 75 66 70
GO:0045893 positive regulation of transcription, DNA-dependent 1394 16 473 63 70 28 52 70 21 64 69 71 86 59 63 74 65 66
GO:0008033 tRNA processing 1278 16 79 67 66 62 57 83 83 78 102 75 110 62 63 130 77 84
GO:0016072 rRNA metabolic process 1241 16 356 56 67 65 42 55 46 67 66 58 76 50 54 61 55 67
GO:0006364 rRNA processing 1158 16 349 52 64 50 39 51 46 59 60 55 70 45 49 56 51 62
GO:0043039 tRNA aminoacylation 1139 16 63 62 83 49 60 76 54 67 101 78 79 76 66 61 86 78
GO:0006418 tRNA aminoacylation for protein translation 1137 16 63 62 83 49 60 76 54 67 101 77 79 76 66 61 85 78
GO:0000375 RNA splicing, via transesterification reactions 859 16 148 48 43 26 43 65 18 48 51 47 67 52 50 54 43 56
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 859 16 148 48 43 26 43 65 18 48 51 47 67 52 50 54 43 56
GO:0006352 DNA-dependent transcription, initiation 823 16 55 55 50 18 43 64 23 52 60 44 79 51 53 51 48 77
GO:0006366 transcription from RNA polymerase II promoter 796 16 85 35 56 24 42 53 26 49 50 65 61 50 50 54 38 58
GO:0000398 mRNA splicing, via spliceosome 786 16 137 41 40 25 35 60 18 42 50 43 63 48 45 51 38 50
GO:0006401 RNA catabolic process 547 16 134 22 27 31 23 31 15 35 28 31 33 25 27 31 25 29
GO:0006342 chromatin silencing 536 16 246 19 22 7 19 19 8 18 19 23 25 23 19 21 24 24
GO:0001510 RNA methylation 503 16 196 19 27 16 14 24 13 25 29 19 27 16 15 20 21 22
GO:0006400 tRNA modification 466 16 29 25 28 26 24 34 33 30 48 25 39 23 24 25 26 27
GO:0006357 regulation of transcription from RNA polymerase II promoter 439 16 29 20 37 13 27 29 13 26 28 41 33 27 23 38 23 32
GO:0001522 pseudouridine synthesis 431 16 26 25 27 26 24 26 29 26 35 27 32 23 26 23 22 34
GO:0031050 dsRNA fragmentation 407 16 145 20 16 12 18 18 8 16 17 15 22 18 21 21 22 18
GO:0070918 production of small RNA involved in gene silencing by RNA 407 16 145 20 16 12 18 18 8 16 17 15 22 18 21 21 22 18
GO:0031123 RNA 3'-end processing 401 16 32 26 22 21 24 22 15 32 30 20 28 25 26 27 24 27
GO:0006402 mRNA catabolic process 393 16 120 14 20 14 16 23 13 21 17 24 22 15 16 22 17 19
GO:0000956 nuclear-transcribed mRNA catabolic process 353 16 118 12 16 13 14 18 11 19 14 21 19 13 14 19 15 17
GO:0030422 production of siRNA involved in RNA interference 343 16 140 16 12 8 12 16 6 14 13 11 17 14 17 16 16 15
GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation 278 16 143 8 8 10 7 9 6 9 11 8 13 7 7 8 7 17
GO:0035196 production of miRNAs involved in gene silencing by miRNA 251 16 133 10 7 6 8 6 3 8 9 7 10 8 8 10 9 9
GO:0006367 transcription initiation from RNA polymerase II promoter 235 16 15 11 14 7 9 19 9 18 17 18 23 17 19 10 11 18
GO:0006354 DNA-dependent transcription, elongation 231 16 132 6 7 6 5 6 8 5 7 8 8 5 5 7 7 9
GO:0000154 rRNA modification 216 16 77 8 22 6 4 9 6 8 14 7 17 6 8 8 11 5
GO:0010267 production of ta-siRNAs involved in RNA interference 213 16 111 8 6 4 6 7 1 8 7 5 9 7 8 9 8 9
GO:0043631 RNA polyadenylation 210 16 12 15 13 6 13 13 4 21 21 6 13 14 15 14 12 18
GO:0031048 chromatin silencing by small RNA 208 16 118 5 7 3 7 5 1 4 8 6 6 10 4 6 9 9
GO:0006346 methylation-dependent chromatin silencing 183 16 121 4 4 1 4 4 3 4 5 5 5 4 5 5 4 5
GO:0016556 mRNA modification 160 16 115 2 3 2 2 3 1 2 4 2 5 4 3 6 4 2
GO:0031124 mRNA 3'-end processing 154 16 14 9 11 8 11 10 4 10 10 8 12 9 10 10 9 9
GO:0034661 ncRNA catabolic process 153 16 13 8 7 18 7 8 3 13 10 7 11 10 11 9 8 10
GO:0031086 nuclear-transcribed mRNA catabolic process, deadenylation-independent decay 126 16 8 6 8 4 6 9 5 9 8 11 10 7 8 9 8 10
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 126 16 8 6 8 4 6 9 5 9 8 11 10 7 8 9 8 10
GO:0009452 7-methylguanosine RNA capping 124 16 10 9 4 6 5 8 4 11 9 14 9 6 5 9 7 8
GO:0036260 RNA capping 124 16 10 9 4 6 5 8 4 11 9 14 9 6 5 9 7 8
GO:0042793 transcription from plastid promoter 121 15 72 4 3 3 4 3 0 4 5 2 3 3 4 4 4 3
GO:0051090 regulation of sequence-specific DNA binding transcription factor activity 119 16 7 6 5 3 5 9 3 8 9 7 12 8 7 11 11 8
GO:0006378 mRNA polyadenylation 114 16 8 8 8 5 8 8 2 7 9 4 8 7 9 8 7 8
GO:0043628 ncRNA 3'-end processing 110 16 11 7 5 9 5 5 7 5 5 7 8 6 7 10 7 6
GO:0000387 spliceosomal snRNP assembly 101 16 7 6 7 3 5 6 3 6 7 10 10 7 6 8 4 6
GO:0000245 spliceosomal complex assembly 97 16 8 6 8 2 4 6 3 6 6 6 12 7 10 2 3 8
GO:0090501 RNA phosphodiester bond hydrolysis 94 16 20 5 4 7 3 4 5 4 5 7 5 5 4 7 4 5
GO:0032784 regulation of DNA-dependent transcription, elongation 89 16 9 5 6 5 4 5 5 4 6 7 7 4 4 5 6 7
GO:0006353 DNA-dependent transcription, termination 87 16 7 5 6 2 5 5 1 5 6 5 9 4 9 8 6 4
GO:0006370 7-methylguanosine mRNA capping 86 16 7 5 3 4 4 5 3 8 5 13 5 4 3 7 5 5
GO:0031167 rRNA methylation 86 16 11 3 17 4 2 5 4 4 5 4 7 2 3 5 8 2
GO:0006434 seryl-tRNA aminoacylation 85 16 2 6 4 8 5 5 2 5 8 9 5 7 7 4 4 4
GO:0010586 miRNA metabolic process 83 16 7 5 5 4 4 5 3 6 4 5 6 6 7 5 5 6
GO:0016075 rRNA catabolic process 83 15 7 4 3 15 3 4 0 8 6 3 6 5 5 5 4 5
GO:0002097 tRNA wobble base modification 82 16 5 5 7 3 5 5 6 5 9 3 7 5 4 4 4 5
GO:0006432 phenylalanyl-tRNA aminoacylation 79 16 3 3 5 4 6 7 6 3 6 4 5 3 3 6 10 5
GO:0030488 tRNA methylation 79 16 5 4 5 3 3 6 3 7 8 5 9 3 4 5 5 4
GO:0042780 tRNA 3'-end processing 78 16 5 5 4 7 4 4 5 4 4 5 5 4 4 8 5 5
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation 77 16 7 4 4 5 3 6 3 5 6 4 7 3 3 4 4 9
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 76 16 12 4 4 4 4 6 2 7 4 5 4 3 4 4 4 5
GO:0031935 regulation of chromatin silencing 76 16 9 4 5 2 5 3 2 4 5 5 6 6 4 6 6 4
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity 76 16 4 4 3 2 3 6 2 6 7 3 8 4 5 8 5 6
GO:0006419 alanyl-tRNA aminoacylation 74 16 4 3 8 3 6 3 3 4 7 4 5 7 4 2 8 3
GO:0031425 chloroplast RNA processing 73 16 13 5 4 1 4 5 3 5 4 4 6 4 3 4 4 4
GO:0002098 tRNA wobble uridine modification 71 16 4 4 7 3 4 4 6 4 8 3 6 4 3 4 3 4
GO:0010587 miRNA catabolic process 70 16 6 4 4 3 4 4 3 5 4 4 5 5 6 4 4 5
GO:0000469 cleavage involved in rRNA processing 67 16 18 3 3 3 2 3 2 3 4 4 3 4 3 5 3 4
GO:0045292 mRNA cis splicing, via spliceosome 66 16 12 3 4 3 2 6 4 3 2 3 6 5 3 2 3 5
GO:0050684 regulation of mRNA processing 66 16 7 2 4 3 7 3 1 4 4 4 5 4 4 3 5 6
GO:0000373 Group II intron splicing 65 14 11 6 2 1 7 5 0 6 0 3 4 3 5 3 4 5
GO:0006430 lysyl-tRNA aminoacylation 65 16 3 3 2 2 2 4 3 2 5 8 4 3 2 10 6 6
GO:0006379 mRNA cleavage 64 16 9 5 3 4 3 3 3 4 5 3 4 3 5 3 3 4
GO:0006438 valyl-tRNA aminoacylation 64 16 3 3 2 2 3 7 2 5 10 3 5 2 5 3 5 4
GO:0006376 mRNA splice site selection 63 16 5 4 3 1 3 6 1 4 5 5 5 5 6 2 2 6
GO:0006426 glycyl-tRNA aminoacylation 62 16 4 3 8 2 4 6 2 3 6 2 5 3 3 3 3 5
GO:0006383 transcription from RNA polymerase III promoter 58 16 3 6 4 2 4 5 2 4 3 3 5 4 4 3 3 3
GO:0006421 asparaginyl-tRNA aminoacylation 58 16 6 2 3 1 2 5 3 3 3 4 5 3 3 3 8 4
GO:0006429 leucyl-tRNA aminoacylation 56 16 2 3 2 2 5 2 2 4 4 2 4 8 3 5 3 5
GO:0006428 isoleucyl-tRNA aminoacylation 55 16 3 2 4 3 2 2 3 4 5 3 6 7 2 2 2 5
GO:0006423 cysteinyl-tRNA aminoacylation 53 16 3 3 3 2 2 3 2 3 3 5 4 3 2 2 6 7
GO:0000478 endonucleolytic cleavage involved in rRNA processing 50 16 17 2 2 2 1 2 1 2 3 3 2 3 2 4 2 2
GO:0006424 glutamyl-tRNA aminoacylation 50 16 5 2 2 2 3 3 3 3 6 4 3 4 3 2 1 4
GO:0006431 methionyl-tRNA aminoacylation 50 16 2 3 4 2 4 3 2 3 5 3 3 3 3 2 4 4
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic 50 16 17 2 2 2 1 2 1 2 3 3 2 3 2 4 2 2
GO:0043484 regulation of RNA splicing 49 13 6 3 2 0 5 2 0 4 5 3 4 2 4 0 4 5
GO:0031053 primary miRNA processing 46 16 5 3 3 3 3 2 2 3 3 3 3 2 3 3 2 3
GO:0006433 prolyl-tRNA aminoacylation 45 16 3 2 3 4 2 5 2 2 3 2 4 3 3 3 2 2
GO:0006435 threonyl-tRNA aminoacylation 45 16 4 2 3 2 2 3 2 2 2 6 3 2 2 4 5 1
GO:0001682 tRNA 5'-leader removal 43 16 3 2 3 2 2 5 2 2 3 3 3 2 2 2 5 2
GO:0016073 snRNA metabolic process 43 16 2 2 3 1 2 2 1 2 2 6 7 2 5 2 2 2
GO:0008616 queuosine biosynthetic process 42 15 0 2 3 2 2 3 3 2 6 4 5 2 2 2 2 2
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 41 16 6 1 3 4 3 2 3 2 1 4 4 2 1 2 2 1
GO:0006436 tryptophanyl-tRNA aminoacylation 41 16 2 2 3 2 2 3 2 3 4 2 3 4 2 2 2 3
GO:0010239 chloroplast mRNA processing 41 15 3 3 3 0 3 2 1 3 3 3 4 2 2 3 3 3
GO:0006422 aspartyl-tRNA aminoacylation 40 16 2 2 6 1 3 3 7 2 2 1 1 1 5 1 1 2
GO:0010599 production of lsiRNA involved in RNA interference 40 15 3 3 2 2 3 3 0 3 3 2 3 2 3 3 3 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 39 16 6 1 3 3 3 2 2 2 1 4 4 2 1 2 2 1
GO:0031440 regulation of mRNA 3'-end processing 39 16 4 1 3 3 4 2 1 2 1 3 3 2 1 3 3 3
GO:0006269 DNA replication, synthesis of RNA primer 38 16 3 3 2 2 2 2 3 2 2 3 3 1 3 2 2 3
GO:0006427 histidyl-tRNA aminoacylation 38 16 3 2 3 1 2 2 2 2 3 2 5 2 2 2 3 2
GO:1901259 chloroplast rRNA processing 38 16 3 3 3 1 2 2 2 3 2 2 3 2 2 3 3 2
GO:0034227 tRNA thio-modification 37 16 4 2 1 2 1 4 1 3 3 2 3 2 2 3 2 2
GO:0009303 rRNA transcription 36 16 3 3 2 3 2 3 1 1 3 2 2 2 2 2 3 2
GO:0000380 alternative mRNA splicing, via spliceosome 34 15 4 2 1 1 2 4 0 2 2 1 3 2 3 1 3 3
GO:0000959 mitochondrial RNA metabolic process 33 12 15 1 2 0 1 0 0 0 2 1 2 2 2 2 2 1
GO:0016180 snRNA processing 33 16 2 2 3 1 2 2 1 2 2 2 3 2 3 2 2 2
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic 32 16 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
GO:0000244 spliceosomal tri-snRNP complex assembly 30 16 2 1 1 1 1 2 1 2 3 1 4 2 2 4 1 2
GO:0006344 maintenance of chromatin silencing 29 15 2 2 2 0 2 2 1 2 2 1 2 2 2 3 2 2
GO:0006420 arginyl-tRNA aminoacylation 29 16 2 2 3 1 1 1 3 2 5 1 1 1 2 1 1 2
GO:0042779 tRNA 3'-trailer cleavage 27 16 2 2 1 4 1 1 3 1 1 3 2 1 1 2 1 1
GO:0043620 regulation of DNA-dependent transcription in response to stress 27 14 4 1 2 0 1 2 0 2 2 4 2 1 1 2 2 1
GO:0048024 regulation of mRNA splicing, via spliceosome 27 13 3 1 1 0 3 1 0 2 3 1 2 2 3 0 2 3
GO:1900864 mitochondrial RNA modification 27 10 14 0 2 0 1 0 0 0 1 0 2 2 1 2 1 1
GO:0006360 transcription from RNA polymerase I promoter 25 16 3 1 2 1 1 2 1 1 1 2 2 1 1 1 4 1
GO:0006425 glutaminyl-tRNA aminoacylation 25 16 1 1 2 1 1 2 1 2 2 1 2 2 2 1 2 2
GO:0010501 RNA secondary structure unwinding 25 16 2 1 2 1 1 3 1 1 1 2 4 1 1 2 1 1
GO:0032786 positive regulation of DNA-dependent transcription, elongation 25 16 2 1 3 1 1 1 1 1 1 2 3 1 1 1 1 4
GO:0070526 threonylcarbamoyladenosine biosynthetic process 25 16 1 1 1 3 1 2 2 2 4 1 1 1 1 1 1 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 24 13 3 0 2 2 3 1 1 1 0 2 3 1 0 2 2 1
GO:0061013 regulation of mRNA catabolic process 24 13 3 0 2 2 3 1 1 1 0 2 3 1 0 2 2 1
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 24 13 3 0 2 2 3 1 1 1 0 2 3 1 0 2 2 1
GO:0016553 base conversion or substitution editing 23 11 6 0 2 1 0 0 0 1 1 0 2 2 2 3 2 1
GO:0030490 maturation of SSU-rRNA 23 14 9 1 1 2 1 1 0 1 0 1 1 1 1 1 1 1
GO:0006359 regulation of transcription from RNA polymerase III promoter 21 16 1 2 1 1 1 3 1 1 1 2 1 2 1 1 1 1
GO:0016480 negative regulation of transcription from RNA polymerase III promoter 21 16 1 2 1 1 1 3 1 1 1 2 1 2 1 1 1 1
GO:0006368 transcription elongation from RNA polymerase II promoter 20 15 1 1 3 2 1 1 1 1 1 2 1 1 1 2 0 1
GO:0009301 snRNA transcription 20 16 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1
GO:0019988 charged-tRNA amino acid modification 20 16 1 1 1 2 1 2 1 1 3 1 1 1 1 1 1 1
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 20 15 1 1 3 2 1 1 1 1 1 2 1 1 1 2 0 1
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA 20 16 1 1 1 2 1 2 1 1 3 1 1 1 1 1 1 1
GO:0006348 chromatin silencing at telomere 19 16 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3
GO:0006437 tyrosyl-tRNA aminoacylation 19 16 1 2 1 1 1 1 3 1 1 1 1 1 1 1 1 1
GO:0035279 mRNA cleavage involved in gene silencing by miRNA 19 14 6 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1
GO:0080156 mitochondrial mRNA modification 19 7 12 0 1 0 0 0 0 0 0 0 1 1 1 2 1 0
GO:0031937 positive regulation of chromatin silencing 18 14 4 1 1 0 1 1 0 1 1 2 1 1 1 1 1 1
GO:0034472 snRNA 3'-end processing 18 16 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1
GO:0034477 U6 snRNA 3'-end processing 18 16 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1
GO:0070475 rRNA base methylation 18 14 2 1 1 1 0 1 1 2 1 2 1 0 1 1 2 1
GO:0090308 regulation of methylation-dependent chromatin silencing 18 14 4 1 1 0 1 1 0 1 1 2 1 1 1 1 1 1
GO:0090309 positive regulation of methylation-dependent chromatin silencing 18 14 4 1 1 0 1 1 0 1 1 2 1 1 1 1 1 1
GO:0016074 snoRNA metabolic process 17 16 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
GO:0043144 snoRNA processing 17 16 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress 17 14 2 1 1 0 1 1 0 1 1 3 1 1 1 1 1 1
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 16 14 1 1 1 0 1 1 0 1 1 3 1 1 1 1 1 1
GO:0000122 negative regulation of transcription from RNA polymerase II promoter 15 11 0 1 0 0 1 2 0 1 1 0 1 1 1 2 1 3
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 15 11 2 1 0 0 2 1 0 1 1 0 1 1 1 0 2 2
GO:0009299 mRNA transcription 15 8 4 1 2 0 0 1 0 0 0 2 2 2 0 0 1 0
GO:0009304 tRNA transcription 15 14 1 1 1 1 1 1 0 1 1 1 1 2 1 0 1 1
GO:0031554 regulation of DNA-dependent transcription, termination 15 15 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1
GO:0031555 transcriptional attenuation 15 15 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1
GO:0031564 transcription antitermination 15 15 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1
GO:0071076 RNA 3' uridylation 15 15 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1
GO:0080009 mRNA methylation 15 15 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1
GO:1900363 regulation of mRNA polyadenylation 15 14 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 2
GO:0000470 maturation of LSU-rRNA 14 14 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1
GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 14 14 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1
GO:0000489 maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 14 14 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1
GO:0031125 rRNA 3'-end processing 14 10 5 1 0 1 0 0 1 0 0 1 1 1 1 1 1 0
GO:0042794 rRNA transcription from plastid promoter 14 14 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1
GO:0045013 carbon catabolite repression of transcription 14 14 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1
GO:0045014 negative regulation of transcription by glucose 14 14 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1
GO:0045990 carbon catabolite regulation of transcription 14 14 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1
GO:0046015 regulation of transcription by glucose 14 14 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 14 10 3 1 1 1 2 0 0 0 1 1 1 1 0 0 2 0
GO:2000232 regulation of rRNA processing 13 13 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1
GO:2000234 positive regulation of rRNA processing 13 13 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1
GO:0000354 cis assembly of pre-catalytic spliceosome 12 10 2 1 1 1 0 0 1 1 0 0 2 1 1 0 0 1
GO:0016554 cytidine to uridine editing 12 7 5 0 1 0 0 0 0 0 0 0 1 1 1 2 1 0
GO:0002100 tRNA wobble adenosine to inosine editing 11 11 1 1 0 0 1 1 0 1 1 0 1 1 1 0 1 1
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 11 11 1 0 1 0 0 1 0 1 1 1 1 1 1 1 1 0
GO:0045944 positive regulation of transcription from RNA polymerase II promoter 11 11 1 0 1 0 0 1 0 1 1 1 1 1 1 1 1 0
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 11 11 1 1 1 1 1 1 1 0 0 1 1 0 0 1 1 0
GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus 11 11 1 0 1 0 0 1 0 1 1 1 1 1 1 1 1 0
GO:0031120 snRNA pseudouridine synthesis 10 3 0 0 0 0 0 0 0 0 0 4 4 0 2 0 0 0
GO:0040031 snRNA modification 10 3 0 0 0 0 0 0 0 0 0 4 4 0 2 0 0 0
GO:0000372 Group I intron splicing 9 9 1 1 0 0 1 1 0 1 0 0 1 1 1 0 1 0
GO:0000374 Group III intron splicing 9 9 1 1 1 0 1 0 0 0 1 1 0 1 0 0 1 1
GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile 9 9 1 1 0 0 1 1 0 1 0 0 1 1 1 0 1 0
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9 2 8 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GO:1900865 chloroplast RNA modification 9 6 4 0 0 0 0 1 0 0 1 0 1 0 0 1 1 0
GO:0010964 regulation of chromatin silencing by small RNA 8 8 1 0 1 0 0 0 0 0 1 1 1 1 0 1 1 0
GO:0031936 negative regulation of chromatin silencing 8 8 1 0 1 1 1 0 0 0 0 0 1 1 0 1 1 0
GO:0036265 RNA (guanine-N7)-methylation 8 4 3 0 0 0 0 0 0 3 1 0 0 0 0 0 0 1
GO:0000963 mitochondrial RNA processing 7 6 2 1 0 0 0 0 0 0 1 1 0 0 1 0 1 0
GO:1900871 chloroplast mRNA modification 7 6 2 0 0 0 0 1 0 0 1 0 1 0 0 1 1 0
GO:0000957 mitochondrial RNA catabolic process 6 6 1 1 0 0 0 0 0 0 1 1 0 0 1 0 1 0
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5 2 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GO:0000460 maturation of 5.8S rRNA 5 2 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5 2 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5 2 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5 2 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 4 3 0 0 2 0 0 0 0 0 0 1 1 0 0 0 0 0
GO:0000395 mRNA 5'-splice site recognition 3 2 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
GO:0097056 selenocysteinyl-tRNA(Sec) biosynthetic process 3 3 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
GO:0000390 spliceosomal complex disassembly 2 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0
GO:0002943 tRNA dihydrouridine synthesis 2 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
GO:0043137 DNA replication, removal of RNA primer 2 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
GO:0070329 tRNA seleno-modification 2 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
GO:0000183 chromatin silencing at rDNA 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0000966 RNA 5'-end processing 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0019083 viral transcription 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
GO:0030466 chromatin silencing at silent mating-type cassette 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
GO:0031054 pre-miRNA processing 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0031118 rRNA pseudouridine synthesis 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0031426 polycistronic mRNA processing 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0031591 wybutosine biosynthetic process 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0032785 negative regulation of DNA-dependent transcription, elongation 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
GO:0061392 regulation of transcription from RNA polymerase II promoter in response to osmotic stress 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GO:0061416 regulation of transcription from RNA polymerase II promoter in response to salt stress 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0