GO |
description |
genes |
species |
ath |
bdi |
cpa |
cre |
hvu |
mac |
olu |
osa |
osaindica |
ppa |
ptr |
sbi |
sit |
sly |
vvi |
zma |
GO:0034470 |
ncRNA processing |
2421 |
16 |
426 |
118 |
133 |
113 |
98 |
133 |
128 |
135 |
160 |
126 |
177 |
107 |
114 |
187 |
127 |
139 |
GO:0006397 |
mRNA processing |
1953 |
16 |
268 |
106 |
106 |
72 |
98 |
143 |
70 |
115 |
110 |
131 |
146 |
102 |
108 |
135 |
107 |
136 |
GO:0008380 |
RNA splicing |
1442 |
16 |
342 |
69 |
68 |
42 |
64 |
91 |
29 |
80 |
77 |
68 |
97 |
103 |
68 |
76 |
65 |
103 |
GO:0008033 |
tRNA processing |
1278 |
16 |
79 |
67 |
66 |
62 |
57 |
83 |
83 |
78 |
102 |
75 |
110 |
62 |
63 |
130 |
77 |
84 |
GO:0006364 |
rRNA processing |
1158 |
16 |
349 |
52 |
64 |
50 |
39 |
51 |
46 |
59 |
60 |
55 |
70 |
45 |
49 |
56 |
51 |
62 |
GO:0000375 |
RNA splicing, via transesterification reactions |
859 |
16 |
148 |
48 |
43 |
26 |
43 |
65 |
18 |
48 |
51 |
47 |
67 |
52 |
50 |
54 |
43 |
56 |
GO:0000377 |
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile |
859 |
16 |
148 |
48 |
43 |
26 |
43 |
65 |
18 |
48 |
51 |
47 |
67 |
52 |
50 |
54 |
43 |
56 |
GO:0000398 |
mRNA splicing, via spliceosome |
786 |
16 |
137 |
41 |
40 |
25 |
35 |
60 |
18 |
42 |
50 |
43 |
63 |
48 |
45 |
51 |
38 |
50 |
GO:0006400 |
tRNA modification |
466 |
16 |
29 |
25 |
28 |
26 |
24 |
34 |
33 |
30 |
48 |
25 |
39 |
23 |
24 |
25 |
26 |
27 |
GO:0070918 |
production of small RNA involved in gene silencing by RNA |
407 |
16 |
145 |
20 |
16 |
12 |
18 |
18 |
8 |
16 |
17 |
15 |
22 |
18 |
21 |
21 |
22 |
18 |
GO:0031050 |
dsRNA fragmentation |
407 |
16 |
145 |
20 |
16 |
12 |
18 |
18 |
8 |
16 |
17 |
15 |
22 |
18 |
21 |
21 |
22 |
18 |
GO:0031123 |
RNA 3'-end processing |
401 |
16 |
32 |
26 |
22 |
21 |
24 |
22 |
15 |
32 |
30 |
20 |
28 |
25 |
26 |
27 |
24 |
27 |
GO:0030422 |
production of siRNA involved in RNA interference |
343 |
16 |
140 |
16 |
12 |
8 |
12 |
16 |
6 |
14 |
13 |
11 |
17 |
14 |
17 |
16 |
16 |
15 |
GO:0000394 |
RNA splicing, via endonucleolytic cleavage and ligation |
278 |
16 |
143 |
8 |
8 |
10 |
7 |
9 |
6 |
9 |
11 |
8 |
13 |
7 |
7 |
8 |
7 |
17 |
GO:0035196 |
production of miRNAs involved in gene silencing by miRNA |
251 |
16 |
133 |
10 |
7 |
6 |
8 |
6 |
3 |
8 |
9 |
7 |
10 |
8 |
8 |
10 |
9 |
9 |
GO:0000154 |
rRNA modification |
216 |
16 |
77 |
8 |
22 |
6 |
4 |
9 |
6 |
8 |
14 |
7 |
17 |
6 |
8 |
8 |
11 |
5 |
GO:0010267 |
production of ta-siRNAs involved in RNA interference |
213 |
16 |
111 |
8 |
6 |
4 |
6 |
7 |
1 |
8 |
7 |
5 |
9 |
7 |
8 |
9 |
8 |
9 |
GO:0043631 |
RNA polyadenylation |
210 |
16 |
12 |
15 |
13 |
6 |
13 |
13 |
4 |
21 |
21 |
6 |
13 |
14 |
15 |
14 |
12 |
18 |
GO:0031124 |
mRNA 3'-end processing |
154 |
16 |
14 |
9 |
11 |
8 |
11 |
10 |
4 |
10 |
10 |
8 |
12 |
9 |
10 |
10 |
9 |
9 |
GO:0009452 |
7-methylguanosine RNA capping |
124 |
16 |
10 |
9 |
4 |
6 |
5 |
8 |
4 |
11 |
9 |
14 |
9 |
6 |
5 |
9 |
7 |
8 |
GO:0036260 |
RNA capping |
124 |
16 |
10 |
9 |
4 |
6 |
5 |
8 |
4 |
11 |
9 |
14 |
9 |
6 |
5 |
9 |
7 |
8 |
GO:0006378 |
mRNA polyadenylation |
114 |
16 |
8 |
8 |
8 |
5 |
8 |
8 |
2 |
7 |
9 |
4 |
8 |
7 |
9 |
8 |
7 |
8 |
GO:0043628 |
ncRNA 3'-end processing |
110 |
16 |
11 |
7 |
5 |
9 |
5 |
5 |
7 |
5 |
5 |
7 |
8 |
6 |
7 |
10 |
7 |
6 |
GO:0000387 |
spliceosomal snRNP assembly |
101 |
16 |
7 |
6 |
7 |
3 |
5 |
6 |
3 |
6 |
7 |
10 |
10 |
7 |
6 |
8 |
4 |
6 |
GO:0000245 |
spliceosomal complex assembly |
97 |
16 |
8 |
6 |
8 |
2 |
4 |
6 |
3 |
6 |
6 |
6 |
12 |
7 |
10 |
2 |
3 |
8 |
GO:0006370 |
7-methylguanosine mRNA capping |
86 |
16 |
7 |
5 |
3 |
4 |
4 |
5 |
3 |
8 |
5 |
13 |
5 |
4 |
3 |
7 |
5 |
5 |
GO:0031167 |
rRNA methylation |
86 |
16 |
11 |
3 |
17 |
4 |
2 |
5 |
4 |
4 |
5 |
4 |
7 |
2 |
3 |
5 |
8 |
2 |
GO:0002097 |
tRNA wobble base modification |
82 |
16 |
5 |
5 |
7 |
3 |
5 |
5 |
6 |
5 |
9 |
3 |
7 |
5 |
4 |
4 |
4 |
5 |
GO:0030488 |
tRNA methylation |
79 |
16 |
5 |
4 |
5 |
3 |
3 |
6 |
3 |
7 |
8 |
5 |
9 |
3 |
4 |
5 |
5 |
4 |
GO:0042780 |
tRNA 3'-end processing |
78 |
16 |
5 |
5 |
4 |
7 |
4 |
4 |
5 |
4 |
4 |
5 |
5 |
4 |
4 |
8 |
5 |
5 |
GO:0006388 |
tRNA splicing, via endonucleolytic cleavage and ligation |
77 |
16 |
7 |
4 |
4 |
5 |
3 |
6 |
3 |
5 |
6 |
4 |
7 |
3 |
3 |
4 |
4 |
9 |
GO:0031425 |
chloroplast RNA processing |
73 |
16 |
13 |
5 |
4 |
1 |
4 |
5 |
3 |
5 |
4 |
4 |
6 |
4 |
3 |
4 |
4 |
4 |
GO:0002098 |
tRNA wobble uridine modification |
71 |
16 |
4 |
4 |
7 |
3 |
4 |
4 |
6 |
4 |
8 |
3 |
6 |
4 |
3 |
4 |
3 |
4 |
GO:0000469 |
cleavage involved in rRNA processing |
67 |
16 |
18 |
3 |
3 |
3 |
2 |
3 |
2 |
3 |
4 |
4 |
3 |
4 |
3 |
5 |
3 |
4 |
GO:0050684 |
regulation of mRNA processing |
66 |
16 |
7 |
2 |
4 |
3 |
7 |
3 |
1 |
4 |
4 |
4 |
5 |
4 |
4 |
3 |
5 |
6 |
GO:0045292 |
mRNA cis splicing, via spliceosome |
66 |
16 |
12 |
3 |
4 |
3 |
2 |
6 |
4 |
3 |
2 |
3 |
6 |
5 |
3 |
2 |
3 |
5 |
GO:0000373 |
Group II intron splicing |
65 |
14 |
11 |
6 |
2 |
1 |
7 |
5 |
0 |
6 |
0 |
3 |
4 |
3 |
5 |
3 |
4 |
5 |
GO:0006379 |
mRNA cleavage |
64 |
16 |
9 |
5 |
3 |
4 |
3 |
3 |
3 |
4 |
5 |
3 |
4 |
3 |
5 |
3 |
3 |
4 |
GO:0006376 |
mRNA splice site selection |
63 |
16 |
5 |
4 |
3 |
1 |
3 |
6 |
1 |
4 |
5 |
5 |
5 |
5 |
6 |
2 |
2 |
6 |
GO:0000478 |
endonucleolytic cleavage involved in rRNA processing |
50 |
16 |
17 |
2 |
2 |
2 |
1 |
2 |
1 |
2 |
3 |
3 |
2 |
3 |
2 |
4 |
2 |
2 |
GO:0043484 |
regulation of RNA splicing |
49 |
13 |
6 |
3 |
2 |
0 |
5 |
2 |
0 |
4 |
5 |
3 |
4 |
2 |
4 |
0 |
4 |
5 |
GO:0031053 |
primary miRNA processing |
46 |
16 |
5 |
3 |
3 |
3 |
3 |
2 |
2 |
3 |
3 |
3 |
3 |
2 |
3 |
3 |
2 |
3 |
GO:0001682 |
tRNA 5'-leader removal |
43 |
16 |
3 |
2 |
3 |
2 |
2 |
5 |
2 |
2 |
3 |
3 |
3 |
2 |
2 |
2 |
5 |
2 |
GO:0008616 |
queuosine biosynthetic process |
42 |
15 |
0 |
2 |
3 |
2 |
2 |
3 |
3 |
2 |
6 |
4 |
5 |
2 |
2 |
2 |
2 |
2 |
GO:0010239 |
chloroplast mRNA processing |
41 |
15 |
3 |
3 |
3 |
0 |
3 |
2 |
1 |
3 |
3 |
3 |
4 |
2 |
2 |
3 |
3 |
3 |
GO:0010599 |
production of lsiRNA involved in RNA interference |
40 |
15 |
3 |
3 |
2 |
2 |
3 |
3 |
0 |
3 |
3 |
2 |
3 |
2 |
3 |
3 |
3 |
2 |
GO:0031440 |
regulation of mRNA 3'-end processing |
39 |
16 |
4 |
1 |
3 |
3 |
4 |
2 |
1 |
2 |
1 |
3 |
3 |
2 |
1 |
3 |
3 |
3 |
GO:0000289 |
nuclear-transcribed mRNA poly(A) tail shortening |
39 |
16 |
6 |
1 |
3 |
3 |
3 |
2 |
2 |
2 |
1 |
4 |
4 |
2 |
1 |
2 |
2 |
1 |
GO:1901259 |
chloroplast rRNA processing |
38 |
16 |
3 |
3 |
3 |
1 |
2 |
2 |
2 |
3 |
2 |
2 |
3 |
2 |
2 |
3 |
3 |
2 |
GO:0034227 |
tRNA thio-modification |
37 |
16 |
4 |
2 |
1 |
2 |
1 |
4 |
1 |
3 |
3 |
2 |
3 |
2 |
2 |
3 |
2 |
2 |
GO:0000380 |
alternative mRNA splicing, via spliceosome |
34 |
15 |
4 |
2 |
1 |
1 |
2 |
4 |
0 |
2 |
2 |
1 |
3 |
2 |
3 |
1 |
3 |
3 |
GO:0016180 |
snRNA processing |
33 |
16 |
2 |
2 |
3 |
1 |
2 |
2 |
1 |
2 |
2 |
2 |
3 |
2 |
3 |
2 |
2 |
2 |
GO:0000244 |
spliceosomal tri-snRNP complex assembly |
30 |
16 |
2 |
1 |
1 |
1 |
1 |
2 |
1 |
2 |
3 |
1 |
4 |
2 |
2 |
4 |
1 |
2 |
GO:0042779 |
tRNA 3'-trailer cleavage |
27 |
16 |
2 |
2 |
1 |
4 |
1 |
1 |
3 |
1 |
1 |
3 |
2 |
1 |
1 |
2 |
1 |
1 |
GO:0048024 |
regulation of mRNA splicing, via spliceosome |
27 |
13 |
3 |
1 |
1 |
0 |
3 |
1 |
0 |
2 |
3 |
1 |
2 |
2 |
3 |
0 |
2 |
3 |
GO:0070526 |
threonylcarbamoyladenosine biosynthetic process |
25 |
16 |
1 |
1 |
1 |
3 |
1 |
2 |
2 |
2 |
4 |
1 |
1 |
1 |
1 |
1 |
1 |
2 |
GO:0060211 |
regulation of nuclear-transcribed mRNA poly(A) tail shortening |
24 |
13 |
3 |
0 |
2 |
2 |
3 |
1 |
1 |
1 |
0 |
2 |
3 |
1 |
0 |
2 |
2 |
1 |
GO:0030490 |
maturation of SSU-rRNA |
23 |
14 |
9 |
1 |
1 |
2 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:0019988 |
charged-tRNA amino acid modification |
20 |
16 |
1 |
1 |
1 |
2 |
1 |
2 |
1 |
1 |
3 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:0071951 |
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA |
20 |
16 |
1 |
1 |
1 |
2 |
1 |
2 |
1 |
1 |
3 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:0035279 |
mRNA cleavage involved in gene silencing by miRNA |
19 |
14 |
6 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
GO:0070475 |
rRNA base methylation |
18 |
14 |
2 |
1 |
1 |
1 |
0 |
1 |
1 |
2 |
1 |
2 |
1 |
0 |
1 |
1 |
2 |
1 |
GO:0034477 |
U6 snRNA 3'-end processing |
18 |
16 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
2 |
1 |
2 |
1 |
1 |
1 |
GO:0034472 |
snRNA 3'-end processing |
18 |
16 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
2 |
1 |
2 |
1 |
1 |
1 |
GO:0043144 |
snoRNA processing |
17 |
16 |
2 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:1900363 |
regulation of mRNA polyadenylation |
15 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
2 |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
15 |
11 |
2 |
1 |
0 |
0 |
2 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
2 |
2 |
GO:0071076 |
RNA 3' uridylation |
15 |
15 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
1 |
GO:0070919 |
production of siRNA involved in chromatin silencing by small RNA |
14 |
10 |
3 |
1 |
1 |
1 |
2 |
0 |
0 |
0 |
1 |
1 |
1 |
1 |
0 |
0 |
2 |
0 |
GO:0000470 |
maturation of LSU-rRNA |
14 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:0000488 |
maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) |
14 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:0031125 |
rRNA 3'-end processing |
14 |
10 |
5 |
1 |
0 |
1 |
0 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
GO:0000489 |
maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) |
14 |
14 |
1 |
1 |
1 |
1 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:2000232 |
regulation of rRNA processing |
13 |
13 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:2000234 |
positive regulation of rRNA processing |
13 |
13 |
1 |
1 |
0 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
1 |
GO:0000354 |
cis assembly of pre-catalytic spliceosome |
12 |
10 |
2 |
1 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
0 |
2 |
1 |
1 |
0 |
0 |
1 |
GO:0002100 |
tRNA wobble adenosine to inosine editing |
11 |
11 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
1 |
1 |
GO:0000374 |
Group III intron splicing |
9 |
9 |
1 |
1 |
1 |
0 |
1 |
0 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
GO:0000376 |
RNA splicing, via transesterification reactions with guanosine as nucleophile |
9 |
9 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
GO:0000462 |
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
9 |
2 |
8 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000372 |
Group I intron splicing |
9 |
9 |
1 |
1 |
0 |
0 |
1 |
1 |
0 |
1 |
0 |
0 |
1 |
1 |
1 |
0 |
1 |
0 |
GO:0036265 |
RNA (guanine-N7)-methylation |
8 |
4 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
3 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
GO:0000963 |
mitochondrial RNA processing |
7 |
6 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
1 |
0 |
0 |
1 |
0 |
1 |
0 |
GO:0000460 |
maturation of 5.8S rRNA |
5 |
2 |
4 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000447 |
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
5 |
2 |
4 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000461 |
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
5 |
2 |
4 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000466 |
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
5 |
2 |
4 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000479 |
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
5 |
2 |
4 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000395 |
mRNA 5'-splice site recognition |
3 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
GO:0000390 |
spliceosomal complex disassembly |
2 |
2 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0070329 |
tRNA seleno-modification |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0002943 |
tRNA dihydrouridine synthesis |
2 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0031591 |
wybutosine biosynthetic process |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0031426 |
polycistronic mRNA processing |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0031118 |
rRNA pseudouridine synthesis |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0031054 |
pre-miRNA processing |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0000966 |
RNA 5'-end processing |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GO:0002103 |
endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |