Child GO terms
- Original GO term
- GO:0003676
- Description
- nucleic acid binding
- Type
- MF
GO | description | genes | species | ath | bdi | cpa | cre | hvu | mac | olu | osa | osaindica | ppa | ptr | sbi | sit | sly | vvi | zma |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GO:0003677 | DNA binding | 31070 | 16 | 2310 | 1742 | 1948 | 693 | 1580 | 2874 | 445 | 2356 | 2544 | 1506 | 2717 | 2047 | 1944 | 2291 | 1521 | 2552 |
GO:0003723 | RNA binding | 16344 | 16 | 1632 | 652 | 572 | 631 | 1417 | 743 | 312 | 3573 | 1531 | 641 | 814 | 1009 | 645 | 813 | 546 | 813 |
GO:0043565 | sequence-specific DNA binding | 7076 | 16 | 469 | 395 | 661 | 82 | 338 | 708 | 51 | 464 | 545 | 313 | 654 | 443 | 512 | 508 | 332 | 601 |
GO:0008135 | translation factor activity, nucleic acid binding | 1631 | 16 | 144 | 87 | 78 | 52 | 75 | 156 | 59 | 100 | 110 | 139 | 139 | 81 | 94 | 99 | 85 | 133 |
GO:0003743 | translation initiation factor activity | 914 | 16 | 94 | 43 | 42 | 30 | 43 | 82 | 40 | 57 | 54 | 79 | 85 | 46 | 48 | 56 | 41 | 74 |
GO:0043566 | structure-specific DNA binding | 871 | 16 | 78 | 44 | 57 | 30 | 54 | 73 | 28 | 48 | 51 | 57 | 73 | 51 | 47 | 75 | 55 | 50 |
GO:0019843 | rRNA binding | 849 | 16 | 94 | 48 | 37 | 28 | 32 | 43 | 12 | 99 | 43 | 44 | 68 | 52 | 38 | 90 | 46 | 75 |
GO:0001067 | regulatory region nucleic acid binding | 718 | 16 | 58 | 39 | 34 | 10 | 33 | 85 | 8 | 48 | 48 | 47 | 58 | 45 | 48 | 56 | 39 | 62 |
GO:0000975 | regulatory region DNA binding | 718 | 16 | 58 | 39 | 34 | 10 | 33 | 85 | 8 | 48 | 48 | 47 | 58 | 45 | 48 | 56 | 39 | 62 |
GO:0044212 | transcription regulatory region DNA binding | 705 | 16 | 57 | 38 | 34 | 9 | 33 | 84 | 7 | 48 | 47 | 46 | 57 | 44 | 47 | 55 | 38 | 61 |
GO:0000498 | base pairing with RNA | 688 | 1 | 688 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0030533 | triplet codon-amino acid adaptor activity | 688 | 1 | 688 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000499 | base pairing with mRNA | 688 | 1 | 688 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000496 | base pairing | 688 | 1 | 688 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0003690 | double-stranded DNA binding | 541 | 16 | 45 | 26 | 39 | 20 | 33 | 40 | 20 | 30 | 30 | 39 | 42 | 30 | 25 | 56 | 35 | 31 |
GO:0000976 | transcription regulatory region sequence-specific DNA binding | 495 | 16 | 35 | 26 | 25 | 1 | 21 | 67 | 1 | 35 | 35 | 31 | 45 | 32 | 31 | 40 | 24 | 46 |
GO:0003684 | damaged DNA binding | 486 | 16 | 32 | 27 | 35 | 22 | 25 | 37 | 30 | 30 | 36 | 30 | 35 | 30 | 27 | 28 | 24 | 38 |
GO:0003746 | translation elongation factor activity | 414 | 16 | 35 | 24 | 22 | 12 | 19 | 32 | 9 | 26 | 34 | 42 | 35 | 15 | 31 | 29 | 19 | 30 |
GO:0003697 | single-stranded DNA binding | 365 | 16 | 37 | 20 | 21 | 11 | 20 | 37 | 10 | 20 | 22 | 23 | 35 | 23 | 22 | 22 | 22 | 20 |
GO:0003729 | mRNA binding | 351 | 16 | 46 | 20 | 20 | 15 | 19 | 28 | 12 | 20 | 20 | 23 | 27 | 19 | 19 | 20 | 23 | 20 |
GO:0003727 | single-stranded RNA binding | 351 | 16 | 46 | 18 | 19 | 18 | 22 | 22 | 16 | 15 | 17 | 24 | 26 | 20 | 22 | 22 | 22 | 22 |
GO:0030983 | mismatched DNA binding | 274 | 16 | 13 | 11 | 21 | 11 | 17 | 24 | 11 | 12 | 14 | 17 | 22 | 17 | 12 | 38 | 17 | 17 |
GO:0003725 | double-stranded RNA binding | 246 | 16 | 20 | 9 | 17 | 16 | 11 | 12 | 4 | 13 | 12 | 21 | 38 | 13 | 24 | 12 | 12 | 12 |
GO:0000049 | tRNA binding | 236 | 16 | 18 | 10 | 11 | 13 | 14 | 17 | 16 | 14 | 22 | 15 | 14 | 11 | 11 | 14 | 21 | 15 |
GO:0008187 | poly-pyrimidine tract binding | 220 | 16 | 21 | 13 | 11 | 11 | 16 | 14 | 10 | 10 | 11 | 17 | 15 | 14 | 16 | 13 | 14 | 14 |
GO:0008266 | poly(U) RNA binding | 220 | 16 | 21 | 13 | 11 | 11 | 16 | 14 | 10 | 10 | 11 | 17 | 15 | 14 | 16 | 13 | 14 | 14 |
GO:0003747 | translation release factor activity | 192 | 16 | 12 | 13 | 11 | 5 | 10 | 17 | 5 | 11 | 15 | 12 | 13 | 12 | 10 | 13 | 10 | 23 |
GO:0008079 | translation termination factor activity | 192 | 16 | 12 | 13 | 11 | 5 | 10 | 17 | 5 | 11 | 15 | 12 | 13 | 12 | 10 | 13 | 10 | 23 |
GO:0008312 | 7S RNA binding | 189 | 16 | 12 | 15 | 8 | 7 | 10 | 13 | 6 | 10 | 11 | 13 | 16 | 14 | 15 | 16 | 9 | 14 |
GO:0017069 | snRNA binding | 159 | 16 | 9 | 8 | 7 | 4 | 10 | 16 | 2 | 10 | 11 | 5 | 15 | 14 | 10 | 20 | 7 | 11 |
GO:0016149 | translation release factor activity, codon specific | 147 | 16 | 8 | 11 | 10 | 4 | 8 | 13 | 4 | 9 | 11 | 9 | 10 | 9 | 8 | 9 | 8 | 16 |
GO:0042162 | telomeric DNA binding | 110 | 16 | 12 | 6 | 5 | 4 | 5 | 8 | 5 | 7 | 7 | 6 | 10 | 7 | 7 | 7 | 7 | 7 |
GO:0008097 | 5S rRNA binding | 89 | 16 | 6 | 5 | 6 | 2 | 3 | 9 | 3 | 5 | 5 | 6 | 9 | 5 | 4 | 6 | 9 | 6 |
GO:0000339 | RNA cap binding | 72 | 16 | 4 | 4 | 4 | 3 | 4 | 8 | 4 | 4 | 4 | 4 | 6 | 4 | 4 | 4 | 5 | 6 |
GO:0010385 | double-stranded methylated DNA binding | 64 | 16 | 6 | 4 | 3 | 1 | 4 | 4 | 1 | 5 | 4 | 5 | 4 | 4 | 4 | 5 | 5 | 5 |
GO:0001047 | core promoter binding | 57 | 15 | 5 | 3 | 4 | 0 | 3 | 3 | 1 | 3 | 4 | 3 | 4 | 6 | 4 | 6 | 4 | 4 |
GO:0008327 | methyl-CpG binding | 51 | 15 | 20 | 2 | 1 | 1 | 2 | 3 | 0 | 2 | 2 | 3 | 3 | 2 | 2 | 3 | 3 | 2 |
GO:0031490 | chromatin DNA binding | 47 | 16 | 7 | 2 | 3 | 2 | 4 | 2 | 1 | 3 | 4 | 4 | 4 | 2 | 2 | 2 | 3 | 2 |
GO:0070717 | poly-purine tract binding | 43 | 16 | 13 | 1 | 3 | 2 | 2 | 3 | 2 | 1 | 1 | 3 | 3 | 1 | 1 | 2 | 3 | 2 |
GO:0008143 | poly(A) RNA binding | 42 | 16 | 12 | 1 | 3 | 2 | 2 | 3 | 2 | 1 | 1 | 3 | 3 | 1 | 1 | 2 | 3 | 2 |
GO:0035197 | siRNA binding | 41 | 15 | 5 | 2 | 2 | 1 | 2 | 2 | 0 | 4 | 1 | 3 | 5 | 1 | 4 | 3 | 5 | 1 |
GO:0017070 | U6 snRNA binding | 36 | 16 | 2 | 1 | 2 | 1 | 3 | 5 | 1 | 2 | 2 | 2 | 4 | 4 | 1 | 2 | 1 | 3 |
GO:0030623 | U5 snRNA binding | 36 | 16 | 2 | 1 | 2 | 1 | 3 | 5 | 1 | 2 | 2 | 2 | 4 | 4 | 1 | 2 | 1 | 3 |
GO:0003689 | DNA clamp loader activity | 35 | 16 | 1 | 1 | 4 | 1 | 1 | 1 | 2 | 1 | 1 | 4 | 8 | 3 | 4 | 1 | 1 | 1 |
GO:0030515 | snoRNA binding | 30 | 12 | 4 | 0 | 0 | 1 | 1 | 2 | 1 | 1 | 0 | 5 | 6 | 2 | 4 | 0 | 1 | 2 |
GO:0001046 | core promoter sequence-specific DNA binding | 30 | 15 | 3 | 1 | 3 | 0 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 4 | 2 | 3 | 2 | 2 |
GO:0003691 | double-stranded telomeric DNA binding | 29 | 16 | 5 | 1 | 2 | 1 | 1 | 2 | 1 | 3 | 2 | 2 | 2 | 1 | 1 | 1 | 2 | 2 |
GO:0003730 | mRNA 3'-UTR binding | 27 | 15 | 5 | 1 | 2 | 2 | 0 | 2 | 2 | 1 | 1 | 2 | 2 | 1 | 1 | 2 | 2 | 1 |
GO:0001159 | core promoter proximal region DNA binding | 27 | 15 | 4 | 1 | 2 | 1 | 1 | 1 | 0 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
GO:0000987 | core promoter proximal region sequence-specific DNA binding | 27 | 15 | 4 | 1 | 2 | 1 | 1 | 1 | 0 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
GO:0030619 | U1 snRNA binding | 25 | 14 | 2 | 1 | 0 | 1 | 2 | 3 | 0 | 1 | 1 | 1 | 2 | 4 | 2 | 2 | 1 | 2 |
GO:0000182 | rDNA binding | 23 | 14 | 2 | 1 | 2 | 0 | 1 | 2 | 0 | 2 | 1 | 1 | 2 | 2 | 1 | 2 | 2 | 2 |
GO:0043047 | single-stranded telomeric DNA binding | 22 | 16 | 4 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 |
GO:0001164 | RNA polymerase I CORE element sequence-specific DNA binding | 21 | 15 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 4 | 2 | 2 | 1 | 1 |
GO:0001163 | RNA polymerase I regulatory region sequence-specific DNA binding | 21 | 15 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 4 | 2 | 2 | 1 | 1 |
GO:0001013 | RNA polymerase I regulatory region DNA binding | 21 | 15 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 4 | 2 | 2 | 1 | 1 |
GO:0036002 | pre-mRNA binding | 21 | 16 | 1 | 1 | 3 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 1 |
GO:0097157 | pre-mRNA intronic binding | 21 | 16 | 1 | 1 | 3 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 1 |
GO:0048027 | mRNA 5'-UTR binding | 20 | 13 | 2 | 1 | 2 | 0 | 1 | 1 | 0 | 3 | 3 | 1 | 1 | 1 | 1 | 2 | 1 | 0 |
GO:0003680 | AT DNA binding | 18 | 12 | 4 | 2 | 2 | 0 | 1 | 1 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 |
GO:0017091 | AU-rich element binding | 18 | 14 | 2 | 1 | 1 | 2 | 1 | 2 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 2 | 1 |
GO:0035198 | miRNA binding | 18 | 13 | 5 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 2 | 1 |
GO:0070878 | primary miRNA binding | 16 | 16 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
GO:0070883 | pre-miRNA binding | 16 | 16 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
GO:0000340 | RNA 7-methylguanosine cap binding | 15 | 15 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 |
GO:0008301 | DNA binding, bending | 14 | 12 | 2 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 1 | 0 | 1 | 1 |
GO:0030620 | U2 snRNA binding | 13 | 13 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
GO:0070180 | LSU rRNA binding | 12 | 12 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 |
GO:0080084 | 5S rDNA binding | 10 | 10 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 |
GO:0097100 | supercoiled DNA binding | 7 | 7 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 0 |
GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding | 7 | 7 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 |
GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding | 7 | 7 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 |
GO:0001012 | RNA polymerase II regulatory region DNA binding | 7 | 7 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 |
GO:0035326 | enhancer binding | 6 | 5 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 |
GO:0001158 | enhancer sequence-specific DNA binding | 6 | 5 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 |
GO:0032135 | DNA insertion or deletion binding | 5 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000217 | DNA secondary structure binding | 5 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0090079 | translation regulator activity, nucleic acid binding | 5 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
GO:0000900 | translation repressor activity, nucleic acid binding | 5 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
GO:0032137 | guanine/thymine mispair binding | 4 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0070361 | mitochondrial light strand promoter anti-sense binding | 4 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000400 | four-way junction DNA binding | 4 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0032138 | single base insertion or deletion binding | 4 | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0003688 | DNA replication origin binding | 3 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000404 | loop DNA binding | 2 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000403 | Y-form DNA binding | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0000406 | double-strand/single-strand DNA junction binding | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0034046 | poly(G) RNA binding | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GO:0031492 | nucleosomal DNA binding | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |