Anchorpoints

Gene id
VV08G12310
Organism
Vitis vinifera

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G06140sorting nexin 1 Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1. sorting nexin 1 (SNX1); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: in 7 processes; LOCATED IN: endosome, microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2B (TAIR:AT5G07120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00104G00920No description available.supercontig_104+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT06G20960No description available.Chr06+View
PT16G07640No description available.Chr16+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL09G010130Sorting nexin 1 (AHRD V1 ***- Q70YZ8_BRAOL)%3B contains Interpro domain(s) IPR015404 Vps5 C-terminalch09-View


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Gene id
Species
Description
Chromosome
Strand