Anchorpoints

Gene id
VV07G08760
Organism
Vitis vinifera

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
VV05G12280name=GSVIVG01035089001;chr5-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G49215Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).5+View
AT3G16850Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 3152 Blast hits to 3138 proteins in 427 species: Archae - 6; Bacteria - 1355; Metazoa - 8; Fungi - 358; Plants - 1330; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). Pectin lyase-like superfamily protein3+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD4G05050No description available.Bd4-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00009G01090No description available.supercontig_9-View
CP00151G00380No description available.supercontig_151+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS12G36810polygalacturonase, putative, expressed12+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_12G24850No description available.Chr12+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G009790Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH)%3B contains Interpro domain(s) IPR012334 Pectin lyase foldch06-View
SL09G075460Polygalacturonase-like protein-like (AHRD V1 ***- Q2XTD7_SOLTU)%3B contains Interpro domain(s) IPR012334 Pectin lyase foldch09+View


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Gene id
Species
Description
Chromosome
Strand