PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: VV01G12800
Organism: Vitis vinifera

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
VV14G12770	name=GSVIVG01032603001;	chr14	-	View
VV17G04310	name=GSVIVG01008073001;	chr17	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G59740	Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G33440.1); Has 6789 Blast hits to 6649 proteins in 1324 species: Archae - 0; Bacteria - 3372; Metazoa - 487; Fungi - 362; Plants - 2181; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink). Major facilitator superfamily protein	1	+	View
AT1G69850	nitrate transporter 1:2 (NRT1:2); FUNCTIONS IN: transporter activity, calcium ion binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G27040.1); Has 5870 Blast hits to 5639 proteins in 1033 species: Archae - 0; Bacteria - 2327; Metazoa - 503; Fungi - 400; Plants - 2186; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink). Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. It also acts as an ABA importer at the site of ABA biosynthesis and is important for the regulation of stomatal aperture in inflorescence stems. nitrate transporter 1:2	1	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00005G02730	No description available.	supercontig_5	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT17G07680	No description available.	Chr17	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB01G011700	No description available.	chr_1	+	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G071080	Proton-dependent oligopeptide transport family protein (AHRD V1 **-- D7KH80_ARALY)%3B contains Interpro domain(s) IPR000109 TGF-beta receptor%2C type I/II extracellular region	ch06	+	View
SL05G006920	Peptide transporter (AHRD V1 *- A6YJX4_9MAGN)%3B contains Interpro domain(s) IPR000109 TGF-beta receptor%2C type I/II extracellular region	ch05	-	View