Anchorpoints

Gene id
VV01G10760
Organism
Vitis vinifera

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
VV14G16100name=GSVIVG01036549001;chr14-View
VV17G04850name=GSVIVG01008140001;chr17-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G69120K-box region and MADS-box transcription factor family protein APETALA1 (AP1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 8031 Blast hits to 8015 proteins in 981 species: Archae - 10; Bacteria - 56; Metazoa - 785; Fungi - 329; Plants - 6623; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink). Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.1-View
AT2G03710This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. K-box region and MADS-box transcription factor family protein SEPALLATA 4 (SEP4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7361 Blast hits to 7360 proteins in 917 species: Archae - 0; Bacteria - 4; Metazoa - 643; Fungi - 310; Plants - 6307; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).2+View
AT1G26310Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants. K-box region and MADS-box transcription factor family protein CAULIFLOWER (CAL); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, floral meristem determinacy; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 8035 Blast hits to 8024 proteins in 979 species: Archae - 8; Bacteria - 30; Metazoa - 829; Fungi - 313; Plants - 6634; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).1-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G69890No description available.Bd1+View
BD1G21980No description available.Bd1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00014G02250No description available.supercontig_14+View
CP00001G01580No description available.supercontig_1+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G11614OsMADS1 - MADS-box family gene with MIKCc type-box, expressed MADS-box transcription factor 13-View
OS07G41370MADS-box transcription factor 18 OsMADS18 - MADS-box family gene with MIKCc type-box, expressed7+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_07G33660No description available.Chr07+View
OSINDICA_03G10160No description available.Chr03-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G15410No description available.Chr10-View
PT08G09840No description available.Chr08+View
PT17G09970No description available.Chr17+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB01G042840No description available.chr_1+View
SB02G038780No description available.chr_2+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI002G39200No description available.scaffold_2+View
SI009G50610No description available.scaffold_9+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G089200MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch02+View
SL03G114830MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY)%3B contains Interpro domain(s) IPR002487 Transcription factor%2C K-boxch03-View
SL05G056620Myocyte-specific enhancer factor 2D (AHRD V1 *-*- MEF2D_HUMAN)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch05-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G26720LOC5420457-View
ZM01G08000MADS-box transcription factor 11-View


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Gene id
Species
Description
Chromosome
Strand