PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: SL10G081970
Organism: Solanum lycopersicum

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
SL01G007220	NHL1 (Fragment) (AHRD V1 **-- B0LZM3_ARATH)%3B contains Interpro domain(s) IPR010847 Harpin-induced 1	ch01	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G06320	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane. NDR1/HIN1-like 3 NDR1/HIN1-like 3 (NHL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus, defense response to bacterium, response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 2 (TAIR:AT3G11650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).	5	-	View
AT3G11650	NDR1/HIN1-like 2 (NHL2); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 3 (TAIR:AT5G06320.1); Has 1008 Blast hits to 1007 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1008; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). NDR1/HIN1-like 2 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus and spermine. Overexpression of the gene induces the expression of PR-1 gene and shows light-dependent 'speck disease-like' symptom on leaves. The gene product is localized to the chloroplast	3	-	View
AT3G52470	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 12 (TAIR:AT2G35960.1); Has 921 Blast hits to 921 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 921; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	3	+	View
AT2G35960	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. NDR1/HIN1-like 12 NDR1/HIN1-like 12 (NHL12); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G52470.1); Has 889 Blast hits to 889 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 889; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	2	+	View
AT5G22200	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G44220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).	5	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD5G09670	No description available.	Bd5	-	View
BD2G55910	No description available.	Bd2	-	View
BD4G41990	No description available.	Bd4	+	View
BD3G45160	No description available.	Bd3	-	View
BD5G26600	No description available.	Bd5	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00104G00420	No description available.	supercontig_104	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA06G13300	CC_gene:ERB1,CC_gene:gatA,CC_gene:erb1,CC_gene:At1g08160,CC_gene:SYP24,CC_functional_completeness:complete,PRODUCT:Putative harpin-induced protein 1 domain containing protein%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr6	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS02G33550	harpin-induced protein 1 domain containing protein, expressed	2	-	View
OS04G58850	harpin-induced protein 1 domain containing protein, expressed	4	-	View
OS11G05860	harpin-induced protein 1 domain containing protein, expressed	11	-	View
OS12G06260	harpin-induced protein 1 domain containing protein, expressed	12	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_12G05160	No description available.	Chr12	-	View
OSINDICA_04G26160	No description available.	Chr04	-	View
OSINDICA_11G04460	No description available.	Chr11	-	View
OSINDICA_04G51040	No description available.	Chr04	-	View
OSINDICA_02G32260	No description available.	Chr02	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT06G20420	No description available.	Chr06	+	View
PT16G07150	No description available.	Chr16	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB08G003720	No description available.	chr_8	-	View
SB06G033570	No description available.	chr_6	-	View
SB04G022010	No description available.	chr_4	-	View
SB03G040790	No description available.	chr_3	-	View
SB05G003630	No description available.	chr_5	+	View
SB06G016230	No description available.	chr_6	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI003G00830	No description available.	scaffold_3	+	View
SI007G30400	No description available.	scaffold_7	+	View
SI001G19510	No description available.	scaffold_1	-	View
SI005G40180	No description available.	scaffold_5	-	View
SI007G09890	No description available.	scaffold_7	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV08G12830	name=GSVIVG01033949001;	chr8	+	View
VV06G09520	name=GSVIVG01036051001;	chr6	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM05G29990	LOC100282844	5	-	View
ZM03G26050	No description available.	3	+	View
ZM10G16300	No description available.	10	+	View
ZM02G15770	VAMP protein SEC22	2	+	View