Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- SL08G082700
- Organism
- Solanum lycopersicum
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT1G64520 | regulatory particle non-ATPase 12A regulatory particle non-ATPase 12A (RPN12a); FUNCTIONS IN: peptidase activity; INVOLVED IN: in 14 processes; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase 12B (TAIR:AT5G42040.1); Has 474 Blast hits to 474 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 129; Plants - 70; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | 1 | + | View |
| AT5G42040 | regulatory particle non-ATPase 12B (RPN12b); FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: proteasome regulatory particle; CONTAINS InterPro DOMAIN/s: COP9 signalosome, subunit CSN8 (InterPro:IPR019280), 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase 12A (TAIR:AT1G64520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). regulatory particle non-ATPase 12B | 5 | - | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00079G00040 | No description available. | supercontig_79 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT03G14270 | No description available. | Chr03 | + | View |
| PT01G08820 | No description available. | Chr01 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV02G05110 | name=GSVIVG01019594001; | chr2 | + | View |