PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: SL08G005150
Organism: Solanum lycopersicum

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G32340	NDR1/HIN1-like 8 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine. NDR1/HIN1-like 8 (NHL8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3653 Blast hits to 3199 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1736; Fungi - 604; Plants - 670; Viruses - 7; Other Eukaryotes - 636 (source: NCBI BLink).	1	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD5G20070	No description available.	Bd5	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS02G46720	ara54-like RING finger protein, putative, expressed	2	+	View
OS04G50720	ara54-like RING finger protein, putative, expressed	4	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_04G42490	No description available.	Chr04	+	View
OSINDICA_02G45070	No description available.	Chr02	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT01G13940	No description available.	Chr01	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB06G027130	No description available.	chr_6	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI007G22620	No description available.	scaffold_7	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV02G01990	name=GSVIVG01013115001;	chr2	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM05G37260	No description available.	5	+	View
ZM02G05800	No description available.	2	-	View