PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: SL07G042230
Organism: Solanum lycopersicum

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
SL12G009240	Ethylene-responsive transcription factor 4 (AHRD V1 -- ERF78_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-binding	ch12	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G19210	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G74930.1); Has 5600 Blast hits to 5488 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5592; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).	1	-	View
AT5G11190	shine3 (SHN3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: anther dehiscence zone, fruit dehiscence zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	5	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD1G72450	No description available.	Bd1	+	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA06G11960	CC_gene:ERF021,CC_gene:RAP2-10,CC_gene:ERF010,CC_gene:ERF019,CC_gene:ERF011,CC_gene:ERF018,CC_gene:ERF016,CC_gene:ERF017,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr6	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT06G13870	No description available.	Chr06	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB07G022180	No description available.	chr_7	+	View
SB04G035160	No description available.	chr_4	-	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI004G03990	No description available.	scaffold_4	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV04G09180	name=GSVIVG01035502001;	chr4	-	View
VV11G02190	name=GSVIVG01015037001;	chr11	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM05G42600	ethylene response element binding protein	5	-	View