PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: SL06G008240
Organism: Solanum lycopersicum

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G083800	Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY)%3B contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding	ch06	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G20430	ROP-interactive CRIB motif-containing protein 6 encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC7 and RIC8 (subfamily group II). Gene is expressed predominantly in inflorescence and flower tissue. ROP-interactive CRIB motif-containing protein 6 (RIC6); CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: PAK-box/P21-Rho-binding family protein (TAIR:AT4G28556.1); Has 458 Blast hits to 374 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 30; Plants - 184; Viruses - 3; Other Eukaryotes - 125 (source: NCBI BLink).	2	-	View
AT1G03982	PAK-box/P21-Rho-binding family protein; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: PAK-box/P21-Rho-binding family protein (TAIR:AT4G28556.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). PAK-box/P21-Rho-binding family protein	1	-	View
AT2G33460	ROP-interactive CRIB motif-containing protein 1 (RIC1); FUNCTIONS IN: protein binding; INVOLVED IN: cell morphogenesis, pollen tube growth, cellulose microfibril organization, cytoplasmic microtubule organization; LOCATED IN: cortical microtubule, transverse to long axis, apical plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 3 (TAIR:AT1G04450.1); Has 393 Blast hits to 355 proteins in 75 species: Archae - 0; Bacteria - 15; Metazoa - 105; Fungi - 14; Plants - 178; Viruses - 2; Other Eukaryotes - 79 (source: NCBI BLink). encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis. ROP-interactive CRIB motif-containing protein 1	2	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00165G00290	No description available.	supercontig_165	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G03550	No description available.	Chr02	-	View
PT08G16890	No description available.	Chr08	+	View