Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL02G084680Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch02+View
SL01G110140Stylish (AHRD V1 **-- D2KC71_BRARP)%3B contains Interpro domain(s) IPR007818 Protein of unknown function DUF702ch01-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G75520SHI-related sequence 5 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).1-View
AT2G21400SHI-related sequence3 (SRS3); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 181 Blast hits to 177 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence3 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.2+View
AT1G19790A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence 71-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD4G36030No description available.Bd4-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00006G01910No description available.supercontig_6+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_09G28440No description available.Chr09-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G11820No description available.Chr05-View
PT04G16060No description available.Chr04-View
PT09G12160No description available.Chr09-View
PT05G23420No description available.Chr05-View
PT07G01750No description available.Chr07-View
PT02G02850No description available.Chr02+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB10G029800No description available.chr_10+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI002G29190No description available.scaffold_2-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV04G01250name=GSVIVG01018845001;chr4-View
VV03G06180name=GSVIVG01024206001;chr3-View
VV18G09810name=GSVIVG01009812001;chr18-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G20300No description available.7-View


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Gene id
Species
Description
Chromosome
Strand