Anchorpoints

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G65450ubiquitin-specific protease 17 (UBP17); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 16 (TAIR:AT4G24560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ubiquitin-specific protease 17 Encodes a ubiquitin-specific protease.5+View
AT4G24560ubiquitin-specific protease 16 ubiquitin-specific protease 16 (UBP16); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: cell proliferation, flower development, shoot development, root development, leaf development; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 17 (TAIR:AT5G65450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation.4-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD4G32500No description available.Bd4-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00021G00030No description available.supercontig_21+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA10G30990CC_gene:Usp36,CC_gene:UBP25,CC_gene:USP42,CC_gene:UBP18,CC_gene:UBP19,CC_gene:UBP15,CC_gene:UBP17,CC_gene:UBP16,CC_functional_completeness:fragment,PRODUCT:Putative ubiquitin carboxyl-terminal hydrolase domain containing protein%2C expressed,GO:0006511,GO:0004221,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:3.1.2.15chr10-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS09G28940ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed9-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_09G23150No description available.Chr09-View
OSINDICA_02G44990No description available.Chr02+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT02G10480No description available.Chr02+View
PT05G15690No description available.Chr05-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB02G026980No description available.chr_2-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G04460name=GSVIVG01009158001;chr18+View
VV00G06710name=GSVIVG01003595001;chrUn-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G16550No description available.7-View


Download

Gene id
Species
Description
Chromosome
Strand