Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL02G089200MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch02+View
SL05G056620Myocyte-specific enhancer factor 2D (AHRD V1 *-*- MEF2D_HUMAN)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-boxch05-View
SL06G069430MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY)%3B contains Interpro domain(s) IPR002487 Transcription factor%2C K-boxch06-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G69120K-box region and MADS-box transcription factor family protein APETALA1 (AP1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 8031 Blast hits to 8015 proteins in 981 species: Archae - 10; Bacteria - 56; Metazoa - 785; Fungi - 329; Plants - 6623; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink). Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.1-View
AT5G60910AGAMOUS-like 8 AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). MADS box gene negatively regulated by APETALA15-View
AT3G30260AGAMOUS-like 79 (AGL79); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 7337 Blast hits to 7335 proteins in 920 species: Archae - 0; Bacteria - 2; Metazoa - 637; Fungi - 301; Plants - 6322; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). AGAMOUS-like 793+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD4G06867No description available.Bd4+View
BD1G69890No description available.Bd1+View
BD1G21980No description available.Bd1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00001G01580No description available.supercontig_1+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA04G24190CC_gene:AGL8,CC_gene:MADS15,CC_gene:SCM1,CC_gene:MADS18,CC_gene:MADS14,CC_functional_completeness:complete,PRODUCT:MADS-box transcription factor 14,GO:0043565,GO:0005634,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr4+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G54160OsMADS14 - MADS-box family gene with MIKCc type-box, expressed3-View
OS03G11614OsMADS1 - MADS-box family gene with MIKCc type-box, expressed MADS-box transcription factor 13-View
OS07G41370MADS-box transcription factor 18 OsMADS18 - MADS-box family gene with MIKCc type-box, expressed7+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_07G33660No description available.Chr07+View
OSINDICA_03G10160No description available.Chr03-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G15410No description available.Chr10-View
PT08G09840No description available.Chr08+View
PT12G06230No description available.Chr12+View
PT17G09970No description available.Chr17+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB01G042840No description available.chr_1+View
SB02G038780No description available.chr_2+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI002G39200No description available.scaffold_2+View
SI009G50610No description available.scaffold_9+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV01G10760name=GSVIVG01012250001;chr1-View
VV14G16100name=GSVIVG01036549001;chr14-View
VV17G04850name=GSVIVG01008140001;chr17-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G08000MADS-box transcription factor 11-View


Download

Gene id
Species
Description
Chromosome
Strand