Anchorpoints
- Gene id
- SL03G114830
- Organism
- Solanum lycopersicum
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL02G089200 | MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-box | ch02 | + | View |
SL05G056620 | Myocyte-specific enhancer factor 2D (AHRD V1 *-*- MEF2D_HUMAN)%3B contains Interpro domain(s) IPR002100 Transcription factor%2C MADS-box IPR002487 Transcription factor%2C K-box | ch05 | - | View |
SL06G069430 | MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY)%3B contains Interpro domain(s) IPR002487 Transcription factor%2C K-box | ch06 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G69120 | K-box region and MADS-box transcription factor family protein APETALA1 (AP1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 8031 Blast hits to 8015 proteins in 981 species: Archae - 10; Bacteria - 56; Metazoa - 785; Fungi - 329; Plants - 6623; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink). Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24. | 1 | - | View |
AT5G60910 | AGAMOUS-like 8 AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). MADS box gene negatively regulated by APETALA1 | 5 | - | View |
AT3G30260 | AGAMOUS-like 79 (AGL79); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 7337 Blast hits to 7335 proteins in 920 species: Archae - 0; Bacteria - 2; Metazoa - 637; Fungi - 301; Plants - 6322; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). AGAMOUS-like 79 | 3 | + | View |
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD4G06867 | No description available. | Bd4 | + | View |
BD1G69890 | No description available. | Bd1 | + | View |
BD1G21980 | No description available. | Bd1 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00001G01580 | No description available. | supercontig_1 | + | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA04G24190 | CC_gene:AGL8,CC_gene:MADS15,CC_gene:SCM1,CC_gene:MADS18,CC_gene:MADS14,CC_functional_completeness:complete,PRODUCT:MADS-box transcription factor 14,GO:0043565,GO:0005634,GO:0003700,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr4 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS03G54160 | OsMADS14 - MADS-box family gene with MIKCc type-box, expressed | 3 | - | View |
OS03G11614 | OsMADS1 - MADS-box family gene with MIKCc type-box, expressed MADS-box transcription factor 1 | 3 | - | View |
OS07G41370 | MADS-box transcription factor 18 OsMADS18 - MADS-box family gene with MIKCc type-box, expressed | 7 | + | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_07G33660 | No description available. | Chr07 | + | View |
OSINDICA_03G10160 | No description available. | Chr03 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT10G15410 | No description available. | Chr10 | - | View |
PT08G09840 | No description available. | Chr08 | + | View |
PT12G06230 | No description available. | Chr12 | + | View |
PT17G09970 | No description available. | Chr17 | + | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB01G042840 | No description available. | chr_1 | + | View |
SB02G038780 | No description available. | chr_2 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI002G39200 | No description available. | scaffold_2 | + | View |
SI009G50610 | No description available. | scaffold_9 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV01G10760 | name=GSVIVG01012250001; | chr1 | - | View |
VV14G16100 | name=GSVIVG01036549001; | chr14 | - | View |
VV17G04850 | name=GSVIVG01008140001; | chr17 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM01G08000 | MADS-box transcription factor 1 | 1 | - | View |