PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: SL02G063070
Organism: Solanum lycopersicum

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
SL03G034180	14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_DANRE)%3B contains Interpro domain(s) IPR000308 14-3-3 protein	ch03	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G16050	general regulatory factor 5 (GRF5); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 7 (TAIR:AT3G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). general regulatory factor 5 Encodes GF14 upsilon chain, a 14-3-3 gene family member.	5	-	View
AT5G38480	general regulatory factor, a 14-3-3 gene general regulatory factor 3 (GRF3); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 7 (TAIR:AT3G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). general regulatory factor 3	5	+	View
AT3G02520	general regulatory factor 7 Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν). general regulatory factor 7 (GRF7); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: nuclear envelope, chloroplast stroma, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 3 (TAIR:AT5G38480.1); Has 2692 Blast hits to 2682 proteins in 382 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 312; Plants - 765; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).	3	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT04G10170	No description available.	Chr04	+	View
PT17G11330	No description available.	Chr17	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV14G08290	name=GSVIVG01031070001;	chr14	+	View