Anchorpoints

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SL02G090480Peptidyl-prolyl cis-trans isomerase D (AHRD V1 **** PPID_RAT)%3B contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-typech02+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G15790SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot. Belongs to one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones. SQUINT (SQN); CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G63400.3); Has 20219 Blast hits to 19939 proteins in 2706 species: Archae - 114; Bacteria - 6925; Metazoa - 4764; Fungi - 1760; Plants - 1912; Viruses - 4; Other Eukaryotes - 4740 (source: NCBI BLink). peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase2-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G45800No description available.Bd1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00062G00430No description available.supercontig_62-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS06G11320peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed6-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_06G10810No description available.Chr06-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G13550No description available.Chr05+View
PT09G10620No description available.Chr09-View
PT04G14430No description available.Chr04-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV03G07200name=GSVIVG01031799001;chr3-View


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Gene id
Species
Description
Chromosome
Strand