PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: SL01G079620
Organism: Solanum lycopersicum

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
SL06G009710	Myb 12 transcription factor (AHRD V1 -* D2EBC3_9SOLN)%3B contains Interpro domain(s) IPR015495 Myb transcription factor	ch06	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G62610	myb domain protein 11 (MYB11); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 12 (TAIR:AT2G47460.1); Has 8738 Blast hits to 8112 proteins in 470 species: Archae - 0; Bacteria - 0; Metazoa - 742; Fungi - 445; Plants - 5931; Viruses - 3; Other Eukaryotes - 1617 (source: NCBI BLink). Member of the R2R3 factor gene family. myb domain protein 11	3	+	View
AT1G18960	myb-like HTH transcriptional regulator family protein myb-like HTH transcriptional regulator family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 103 (TAIR:AT5G56110.1); Has 5693 Blast hits to 5684 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 67; Plants - 4922; Viruses - 3; Other Eukaryotes - 403 (source: NCBI BLink).	1	+	View
AT5G49330	Member of the R2R3 factor gene family. myb domain protein 111 myb domain protein 111 (MYB111); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 12 (TAIR:AT2G47460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).	5	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD1G64687	No description available.	Bd1	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00018G00140	No description available.	supercontig_18	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA08G10840	CC_gene:MYB6,CC_gene:MYB1,CC_gene:MYB330,CC_gene:MYB308,CC_gene:MYB4,CC_gene:P,CC_gene:MYB12,CC_functional_completeness:complete,PRODUCT:Putative Whole genome shotgun sequence of line PN40024%2C scaffold_5.assembly12x (Fragment),GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number	chr8	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS01G19970	MYB family transcription factor, putative, expressed	1	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_03G17930	No description available.	Chr03	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G19810	No description available.	Chr02	+	View
PT10G14100	No description available.	Chr10	-	View
PT14G12270	No description available.	Chr14	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB01G037670	No description available.	chr_1	+	View

Setaria italica

Gene id	Description	Chromosome	Strand	Multiplicon
SI005G03020	No description available.	scaffold_5	-	View
SI009G44530	No description available.	scaffold_9	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV05G11950	name=GSVIVG01035041001;	chr5	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM09G22640	myb-related protein Myb4 (LOC100282078), mRNA	9	+	View
ZM01G13060	A-type R2R3 Myb proteinPericarp color 1 Fragment ;	1	-	View