Anchorpoints

Gene id
SI009G58710
Organism
Setaria italica

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SI009G36090No description available.scaffold_9-View
SI002G28830No description available.scaffold_2-View
SI007G20930No description available.scaffold_7+View
SI006G23680No description available.scaffold_6-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G23070RHOMBOID-like protein 7 (RBL7); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: root, pollen tube; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 6 (TAIR:AT1G12750.3); Has 5309 Blast hits to 5308 proteins in 1628 species: Archae - 134; Bacteria - 3233; Metazoa - 520; Fungi - 126; Plants - 324; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink). RHOMBOID-like protein 74-View
AT1G63120AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein. RHOMBOID-like 2 (RBL2); CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 6 (TAIR:AT1G12750.3); Has 6856 Blast hits to 6855 proteins in 1947 species: Archae - 152; Bacteria - 4411; Metazoa - 521; Fungi - 179; Plants - 374; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). RHOMBOID-like 21-View
AT5G07250RHOMBOID-like protein 3 RHOMBOID-like protein 3 (RBL3); FUNCTIONS IN: serine-type endopeptidase activity; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5-View
AT1G12750RHOMBOID-like protein 6 RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).1-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD5G18750No description available.Bd5+View
BD1G77450No description available.Bd1-View
BD4G35740No description available.Bd4-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00074G00720No description available.supercontig_74+View
CP00107G00230No description available.supercontig_107-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA05G20620CC_functional_completeness:fragment,PRODUCT:OsRhmbd16 - Putative Rhomboid homologue%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr5+View
MA11G22300CC_gene:RHBDF1,CC_gene:Rhbdf1,CC_gene:rhbdf1,CC_functional_completeness:complete,PRODUCT:OsRhmbd16 - Putative Rhomboid homologue%2C expressed,GO:0016021,GO:0004252,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:3.4.21.105chr11-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS08G43320OsRhmbd14 - Putative Rhomboid homologue, expressed8-View
OS10G37760OsRhmbd17 - Putative Rhomboid homologue, expressed10+View
OS03G02530OsRhmbd7 - Putative Rhomboid homologue, expressed3+View
OS04G48130OsRhmbd11 - Putative Rhomboid homologue, expressed4+View
OS09G35730OsRhmbd16 - Putative Rhomboid homologue, expressed9-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_10G28160No description available.Chr10+View
OSINDICA_09G28020No description available.Chr09-View
OSINDICA_03G01550No description available.Chr03+View
OSINDICA_08G41980No description available.Chr08-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT12G13960No description available.Chr12+View
PT01G10870No description available.Chr01+View
PT03G12290No description available.Chr03-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB01G049520No description available.chr_1-View
SB06G025770No description available.chr_6+View
SB07G025140No description available.chr_7+View
SB02G030450No description available.chr_2-View
SB01G031210No description available.chr_1-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G026080Rhomboid family protein (AHRD V1 **-- D7M0H4_ARALY)%3B contains Interpro domain(s) IPR002610 Peptidase S54%2C rhomboidch03+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV16G00500name=GSVIVG01010602001;chr16-View
VV02G07010name=GSVIVG01019824001;chr2-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G19370No description available.1+View
ZM01G01040No description available.1+View
ZM07G19910No description available.7+View


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Gene id
Species
Description
Chromosome
Strand