PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: SI009G49760
Organism: Setaria italica

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G22830	squalene epoxidase 2 (SQE2); FUNCTIONS IN: squalene monooxygenase activity, electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 3 (TAIR:AT4G37760.1); Has 2838 Blast hits to 2834 proteins in 830 species: Archae - 46; Bacteria - 1617; Metazoa - 134; Fungi - 223; Plants - 197; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink). squalene epoxidase 2	2	-	View
AT4G37760	squalene epoxidase 3 squalene epoxidase 3 (SQE3); FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 2 (TAIR:AT2G22830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).	4	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD1G69170	No description available.	Bd1	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00160G00270	No description available.	supercontig_160	-	View
CP00129G00670	No description available.	supercontig_129	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA03G26480	CC_gene:Sqle,CC_gene:SQLE,CC_gene:SQP2,CC_functional_completeness:complete,PRODUCT:Squalene monooxygenase,GO:0055114,GO:0050660,GO:0016491,GO:0016021,GO:0008152,GO:0004506,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:1.14.99.7	chr3	+	View
MA08G05150	CC_gene:Sqle,CC_gene:SQLE,CC_gene:SQP2,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,GO:0055114,GO:0004497,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:1.14.99.7	chr8	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS03G12900	squalene monooxygenase, putative, expressed	3	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_03G11330	No description available.	Chr03	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT07G00760	No description available.	Chr07	+	View
PT02G11450	No description available.	Chr02	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB01G042050	No description available.	chr_1	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL04G077440	Squalene monooxygenase (AHRD V1 ***- Q506K3_DATIN)%3B contains Interpro domain(s) IPR013698 Squalene epoxidase	ch04	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV03G08740	name=GSVIVG01036973001;	chr3	-	View
VV18G05490	name=GSVIVG01009287001;	chr18	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM01G08660	No description available.	1	+	View
ZM09G25330	LOC100285558	9	-	View