Anchorpoints

Gene id
SI002G28670
Organism
Setaria italica

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SI007G21080No description available.scaffold_7+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G51990C-repeat-binding factor 4 C-repeat-binding factor 4 (CBF4); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: stem, root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1); Has 5782 Blast hits to 5666 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5775; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink). encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF4). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to drought stress and abscisic acid treatment, but not to low temperature.5-View
AT1G12610DWARF AND DELAYED FLOWERING 1 (DDF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G63030.2); Has 5207 Blast hits to 5205 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5202; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). Integrase-type DNA-binding superfamily protein Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.1-View
AT1G63030Integrase-type DNA-binding superfamily protein encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels. DWARF AND DELAYED FLOWERING 2 (ddf2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G12610.1); Has 5240 Blast hits to 5238 proteins in 236 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5235; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).1-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD3G31600No description available.Bd3+View
BD5G18850No description available.Bd5+View
BD4G35570No description available.Bd4+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA11G03260CC_gene:DREB1F,CC_gene:ERF027,CC_gene:DREB1B,CC_gene:DREB1C,CC_gene:DREB1D,CC_gene:ERF026,CC_gene:ERF025,CC_gene:ERF024,CC_functional_completeness:complete,PRODUCT:Putative Ethylene-responsive transcription factor ERF024,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr11-View
MA03G12620CC_gene:CRF1,CC_gene:WIN1,CC_gene:LEP,CC_gene:ERF9,CC_gene:CRF2,CC_gene:ERF4,CC_gene:ERF003,CC_gene:RAP2-11,CC_functional_completeness:missing_functional_completeness,PRODUCT:Hypothetical protein,GO:0003700,GO:0003677,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr3+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS08G43210AP2 domain containing protein, expressed Dehydration-responsive element-binding protein 1I8-View
OS09G35010Dehydration-responsive element-binding protein 1B dehydration-responsive element-binding protein, putative, expressed9-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_04G40530Dehydration-responsive element-binding protein 1EChr04+View
OSINDICA_09G27820Dehydration-responsive element-binding protein 1HChr09-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G11070No description available.Chr01+View
PT03G12120No description available.Chr03-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB07G025210No description available.chr_7+View
SB02G030310No description available.chr_2-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G026270Ethylene-responsive transcription factor 4 (AHRD V1 *-** ERF78_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch03+View
SL08G007820Ethylene-responsive transcription factor 10 (AHRD V1 *-** ERF77_ARATH)%3B contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF%2C DNA-bindingch08-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G07270name=GSVIVG01019860001;chr2+View
VV16G00730name=GSVIVG01010629001;chr16-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM01G34610dehydration-responsive element-binding protein 1B1-View
ZM02G33880CBF3-like protein2-View
ZM07G19730No description available.7-View
ZM01G19480No description available.1+View


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