Anchorpoints

Gene id
SB02G031280
Organism
Sorghum bicolor

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G75950S phase kinase-associated protein 1 SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. S phase kinase-associated protein 1 (SKP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: negative regulation of DNA recombination, response to cadmium ion, mitosis, male meiosis, ubiquitin-dependent protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (TAIR:AT5G42190.1); Has 1455 Blast hits to 1451 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 552; Fungi - 179; Plants - 538; Viruses - 11; Other Eukaryotes - 175 (source: NCBI BLink).1+View
AT1G20140SKP1-like 4 (SK4); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 3 (TAIR:AT2G25700.1); Has 1439 Blast hits to 1435 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 180; Plants - 528; Viruses - 11; Other Eukaryotes - 160 (source: NCBI BLink). SKP1-like 41+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD4G36540No description available.Bd4-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00006G02890No description available.supercontig_6+View
CP00020G00920No description available.supercontig_20+View
CP00026G02900No description available.supercontig_26-View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA11G07320CC_gene:ASK9,CC_gene:ASK13,CC_gene:ASK12,CC_gene:ASK11,CC_gene:SKP1A,CC_gene:SKP1B,CC_gene:ASK3,CC_gene:ASK4,CC_functional_completeness:complete,PRODUCT:SKP1-like protein 4,GO:0006511,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr11-View
MA08G34770CC_gene:ASK13,CC_gene:ASK10,CC_gene:ASK12,CC_gene:ASK11,CC_gene:ASK3,CC_gene:ASK4,CC_gene:SKP1B,CC_gene:SKP1A,CC_functional_completeness:modules,PRODUCT:SKP1-like protein 1A,GO:0006511,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr8-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS09G36830Skp1 family, dimerisation domain containing protein, expressed9-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_09G29120No description available.Chr09-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G24310No description available.Chr05+View
PT09G13580No description available.Chr09+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI002G29700No description available.scaffold_2-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV03G04660name=GSVIVG01024017001;chr3-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM07G31190SKP1-like protein 1B7+View


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Species
Description
Chromosome
Strand