Anchorpoints
- Gene id
- SB02G031280
- Organism
- Sorghum bicolor
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G75950 | S phase kinase-associated protein 1 SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. S phase kinase-associated protein 1 (SKP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: negative regulation of DNA recombination, response to cadmium ion, mitosis, male meiosis, ubiquitin-dependent protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (TAIR:AT5G42190.1); Has 1455 Blast hits to 1451 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 552; Fungi - 179; Plants - 538; Viruses - 11; Other Eukaryotes - 175 (source: NCBI BLink). | 1 | + | View |
AT1G20140 | SKP1-like 4 (SK4); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 3 (TAIR:AT2G25700.1); Has 1439 Blast hits to 1435 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 180; Plants - 528; Viruses - 11; Other Eukaryotes - 160 (source: NCBI BLink). SKP1-like 4 | 1 | + | View |
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD4G36540 | No description available. | Bd4 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00006G02890 | No description available. | supercontig_6 | + | View |
CP00020G00920 | No description available. | supercontig_20 | + | View |
CP00026G02900 | No description available. | supercontig_26 | - | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA11G07320 | CC_gene:ASK9,CC_gene:ASK13,CC_gene:ASK12,CC_gene:ASK11,CC_gene:SKP1A,CC_gene:SKP1B,CC_gene:ASK3,CC_gene:ASK4,CC_functional_completeness:complete,PRODUCT:SKP1-like protein 4,GO:0006511,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr11 | - | View |
MA08G34770 | CC_gene:ASK13,CC_gene:ASK10,CC_gene:ASK12,CC_gene:ASK11,CC_gene:ASK3,CC_gene:ASK4,CC_gene:SKP1B,CC_gene:SKP1A,CC_functional_completeness:modules,PRODUCT:SKP1-like protein 1A,GO:0006511,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr8 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS09G36830 | Skp1 family, dimerisation domain containing protein, expressed | 9 | - | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_09G29120 | No description available. | Chr09 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT05G24310 | No description available. | Chr05 | + | View |
PT09G13580 | No description available. | Chr09 | + | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI002G29700 | No description available. | scaffold_2 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV03G04660 | name=GSVIVG01024017001; | chr3 | - | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM07G31190 | SKP1-like protein 1B | 7 | + | View |