Anchorpoints

Gene id
SB01G003120
Organism
Sorghum bicolor

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G02260expansin A9 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A9 (EXPA9); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: Barwin-like endoglucanases superfamily protein (TAIR:AT2G37640.1); Has 2170 Blast hits to 2166 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 2091; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).5+View
AT2G28950Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A6 (EXPA6); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2139 Blast hits to 2136 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 24; Plants - 2081; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). expansin A62-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G03640No description available.Bd1+View

Musa acuminata

Gene id Description Chromosome Strand Multiplicon
MA05G12390CC_gene:EXPB18,CC_gene:EXPB5,CC_gene:EXPB11,CC_gene:EXPB2,CC_gene:EXPB1,CC_gene:EXPB3,CC_gene:EXPB16,CC_gene:EXPB17,CC_functional_completeness:complete,PRODUCT:Expansin-B17,GO:0019953,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr5+View
MA02G16740CC_gene:EXPA9,CC_gene:EXPA3,CC_gene:EXPA16,CC_gene:EXPA6,CC_gene:EXPA4,CC_gene:EXPA7,CC_functional_completeness:complete,PRODUCT:Expansin-A7,GO:0009664,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr2-View
MA10G23110CC_gene:EXPA9,CC_gene:EXPA16,CC_gene:EXPA6,CC_gene:EXPA7,CC_gene:EXPA3,CC_gene:EXPA4,CC_functional_completeness:complete,PRODUCT:Expansin-A4,GO:0009664,GO:0005576,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_numberchr10+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS03G60720Expansin-A7 expansin precursor, putative, expressed3-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G57920No description available.Chr03-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT06G08610No description available.Chr06-View
PT01G24090No description available.Chr01-View
PT08G05710No description available.Chr08-View
PT09G03180No description available.Chr09-View
PT10G20250No description available.Chr10+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI009G03130No description available.scaffold_9+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL06G005560Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch06-View
SL09G010860Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminalch09-View
SL06G076220Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR002963 Expansinch06-View
SL10G084780Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminalch10-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G03450name=GSVIVG01024946001;chr6-View
VV13G05160name=GSVIVG01016525001;chr13-View
VV08G14490name=GSVIVG01034162001;chr8-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G01430alpha-expansin 65+View
ZM01G57960No description available.1-View


Download

Gene id
Species
Description
Chromosome
Strand