Anchorpoints

Gene id
PT18G13940
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G57090Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. ETHYLENE INSENSITIVE ROOT 1 (EIR1); CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G01420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). Auxin efflux carrier family protein5+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G31530No description available.Bd1+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00115G00550No description available.supercontig_115+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS06G44970Probable auxin efflux carrier component 2 auxin efflux carrier component, putative, expressed6+View

Setaria italica

Gene id Description Chromosome Strand Multiplicon
SI004G19320No description available.scaffold_4-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV11G09450name=GSVIVG01029266001;chr11+View


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Gene id
Species
Description
Chromosome
Strand