Anchorpoints

Gene id
PT17G12620
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT12G04820No description available.Chr12+View
PT04G08940No description available.Chr04+View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G37770EF hand calcium-binding protein family TOUCH 2 (TCH2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 13 processes; LOCATED IN: plasma membrane, actin cytoskeleton; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 23 (TAIR:AT1G66400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). Also regulates nitric oxide levels.5-View
AT1G66400Encodes a calmodulin-like protein. Regulates nitric oxide levels and transition to flowering. calmodulin like 23 calmodulin like 23 (CML23); FUNCTIONS IN: calcium ion binding; INVOLVED IN: regulation of flower development, regulation of nitric oxide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G37770.1); Has 30871 Blast hits to 18969 proteins in 1622 species: Archae - 1; Bacteria - 165; Metazoa - 12615; Fungi - 7465; Plants - 6190; Viruses - 4; Other Eukaryotes - 4431 (source: NCBI BLink).1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00116G00320No description available.supercontig_116-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G063340Calmodulin 4 (AHRD V1 **-- Q6WEH7_MOUSE)%3B contains Interpro domain(s) IPR011992 EF-Hand typech02-View
SL02G091480Calmodulin 4 (AHRD V1 ***- Q6WEH7_MOUSE)%3B contains Interpro domain(s) IPR011992 EF-Hand typech02-View


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Description
Chromosome
Strand