PLAZA 3.0 Monocots : colinear gene pairs

Anchorpoints

Gene id: PT17G11140
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT08G11480	No description available.	Chr08	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G13220	Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1); Has 343402 Blast hits to 148924 proteins in 3995 species: Archae - 3820; Bacteria - 73706; Metazoa - 134029; Fungi - 26703; Plants - 17784; Viruses - 1471; Other Eukaryotes - 85889 (source: NCBI BLink). nuclear matrix constituent protein-related	1	+	View
AT1G67230	Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. LITTLE NUCLEI1 (LINC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleus organization; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2); Has 314297 Blast hits to 138342 proteins in 3965 species: Archae - 3454; Bacteria - 70538; Metazoa - 123746; Fungi - 25476; Plants - 17143; Viruses - 1173; Other Eukaryotes - 72767 (source: NCBI BLink). little nuclei1	1	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00001G02270	No description available.	supercontig_1	+	View
CP00179G00320	No description available.	supercontig_179	-	View

Musa acuminata

Gene id	Description	Chromosome	Strand	Multiplicon
MA06G09600	CC_gene:At4g08850,CC_gene:GSO1,CC_gene:ERECTA,CC_gene:At5g37450,CC_gene:At1g35710,CC_gene:TMM,CC_gene:At5g65770,CC_gene:PII-2,CC_functional_completeness:modules,PRODUCT:Putative Piriformospora indica-insensitive protein 2,GO:0005515,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:3.1.3.16	chr6	-	View

Solanum lycopersicum

Gene id	Description	Chromosome	Strand	Multiplicon
SL02G089800	Nuclear matrix constituent protein 1-like (AHRD V1 ***- A6BME3_PETCR)	ch02	-	View
SL03G045050	Nuclear matrix constituent protein 1 (AHRD V1 ***- D2YZU5_APIGR)	ch03	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV01G08380	name=GSVIVG01011972001;	chr1	-	View