Anchorpoints
- Gene id
- PT16G11910
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT10G18730 | No description available. | Chr10 | - | View |
PT08G06990 | No description available. | Chr08 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT2G40150 | Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). TRICHOME BIREFRINGENCE-LIKE 28 TRICHOME BIREFRINGENCE-LIKE 28 (TBL28); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1332 Blast hits to 1305 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 2 | + | View |
AT5G01360 | Plant protein of unknown function (DUF828) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). TRICHOME BIREFRINGENCE-LIKE 3 (TBL3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 5 | - | View |
Brachypodium distachyon
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BD2G54010 | No description available. | Bd2 | + | View |
BD1G65530 | No description available. | Bd1 | - | View |
BD1G16610 | No description available. | Bd1 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00019G01600 | No description available. | supercontig_19 | - | View |
CP00011G00840 | No description available. | supercontig_11 | - | View |
Musa acuminata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MA11G25500 | CC_gene:trpS,CC_gene:C7orf58,CC_gene:atpF,CC_functional_completeness:fragment,PRODUCT:expressed protein,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr11 | + | View |
MA05G14650 | CC_gene:Pitx1,CC_gene:PITX1,CC_gene:Casd1,CC_gene:CASD1,CC_gene:casd1,CC_gene:C7orf58,CC_functional_completeness:fragment,PRODUCT:leaf senescence related protein%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr5 | + | View |
MA05G28970 | CC_gene:secA,CC_gene:secD,CC_functional_completeness:complete,PRODUCT:expressed protein,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr5 | - | View |
MA10G23580 | CC_gene:casd1,CC_gene:TOP6B,CC_functional_completeness:complete,PRODUCT:proteins of unknown function domain containing protein%2C putative%2C expressed,CC_evidence_code:ISS,CC_status:in_progress,CC_evidence:automatic,CC_EC_number:no_EC_number | chr10 | + | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS05G39350 | PMR5, putative, expressed | 5 | - | View |
OS07G49280 | PMR5, putative, expressed | 7 | - | View |
OS03G18110 | proteins of unknown function domain containing protein, putative, expressed | 3 | + | View |
OS01G61460 | leaf senescence related protein, putative, expressed | 1 | + | View |
OS11G01370 | PMR5, putative, expressed | 11 | + | View |
OS12G01380 | proteins of unknown function domain containing protein, expressed | 12 | + | View |
Oryza sativa ssp. indica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OSINDICA_03G16780 | No description available. | Chr03 | + | View |
OSINDICA_07G41260 | No description available. | Chr07 | - | View |
OSINDICA_01G58140 | No description available. | Chr01 | + | View |
Sorghum bicolor
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SB02G043950 | No description available. | chr_2 | - | View |
SB08G000470 | No description available. | chr_8 | + | View |
SB01G038450 | No description available. | chr_1 | - | View |
Setaria italica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SI009G45370 | No description available. | scaffold_9 | - | View |
SI002G45230 | No description available. | scaffold_2 | - | View |
SI005G37630 | No description available. | scaffold_5 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL09G005630 | No description available. | ch09 | + | View |
SL10G076570 | No description available. | ch10 | - | View |
SL03G095810 | No description available. | ch03 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV13G10310 | name=GSVIVG01032800001; | chr13 | + | View |
VV08G00440 | name=GSVIVG01011180001; | chr8 | + | View |
Zea mays
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ZM01G12310 | No description available. | 1 | + | View |
ZM07G30860 | No description available. | 7 | - | View |